<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:01:53"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747326" ref_strand="+" ref_description="SGN-E747326 [GI|47104636]">
      <seq>ttcaaaggggtcgaagcagaaacttacagacaaagaaaacgacgggggggagagagagagtgccaagaattcagtagatctctcattcttctcccaaaatgaatgatcttttaaatgatgatgataattttgatgccccaaggcatcaaagtaatagaaatggagatgttgaaatgggaatacaaataccaatgaattccggggagctaggccttgatgatttctttaaaaaggttcaacaaattgagaaacagtatggaagactgaacgaactactccagaagcttcaggatgcacatgaggaatcaaaggctgttacaaaagcttctgctatgaaagcaattaagcagcggatggaaaaagatgttgatgaagtcggaaaaatagctcgagtaatcaaatcaaaaatcgaggagcttgataaagaaaatctagccaatagaaacaaaccaggttgtggtaaaggatcagctgttgacagatcaagaacagcaacaacagtttccttgaaaaagaagttcaaagataaaatggctgagtttcagactttaagagaaaacatccaccatgaatatcgcgaggttgttgaaaggcgagtattcacagtgacgggtaatcgagctgatgaagagacaattgataggttgatagagactggagacagtgaacagatattccagaaagctattcagcaacaagggcgaggacaaataatgggcacactagctgaaattcaagagcgccatgatgcagttagagaattagagaggaagcttcttgagttgcaacagatattcctggacatagcagtgttggttgatgctcaaggagacatgcttgataatatagaatcacaggtttcaactgctgtagaccatgtacaatcagggactactgctctacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatcctcctcataattgtcgcaattatcgtcgttggtgtgctcaagccatggcagagtaacaagggtgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaacattttcttggttttgtacatgttgaaccttggggcttgcctctctatatatagtttgaagtgtgattgaaacatgtaacctattctttataatcttgatttttatttggttggaattgagagaacactatttggatcggaaaaatacatttatcacaaattttaatgtactccaatgtctttgcttgaatgagcttctttttttcattttgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="879" stop="7442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1189" g_stop="1305" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="233" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1306" i_stop="1471" i_length="166">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1472" g_stop="1528" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="290" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1529" i_stop="2772" i_length="1244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2773" g_stop="2821" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="339" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2822" i_stop="3519" i_length="698">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3520" g_stop="3608" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="428" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3609" i_stop="3688" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3689" g_stop="3762" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="502" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3763" i_stop="4342" i_length="580">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4343" g_stop="4385" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="545" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4386" i_stop="4463" i_length="78">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4464" g_stop="4524" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="606" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4525" i_stop="4631" i_length="107">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4632" g_stop="4657" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="632" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4658" i_stop="4760" i_length="103">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4761" g_stop="4838" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="633" r_stop="710" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4839" i_stop="6001" i_length="1163">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6002" g_stop="6082" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="791" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="6083" i_stop="6527" i_length="445">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="6528" g_stop="6593" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="857" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="6681" g_stop="7159" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1336" r_length="479" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E747326" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>1220</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1189" e_stop="1305"/>
          <exon e_start="1472" e_stop="1528"/>
          <exon e_start="2773" e_stop="2821"/>
          <exon e_start="3520" e_stop="3608"/>
          <exon e_start="3689" e_stop="3762"/>
          <exon e_start="4343" e_stop="4385"/>
          <exon e_start="4464" e_stop="4524"/>
          <exon e_start="4632" e_stop="4657"/>
          <exon e_start="4761" e_stop="4838"/>
          <exon e_start="6002" e_stop="6082"/>
          <exon e_start="6528" e_stop="6593"/>
          <exon e_start="6681" e_stop="7159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGATAATTTTGATGCCCCAAGGCATCAAAGTAATAGAAATGGAGATGTTGAAATGGGAATACAAATACCAATGAATTCCGGGGAGCTAGGCCTTGATGATTTCTTTAAAAAGGTTTTTGGATGATCTTTTTACTGTTCTTGCATTGGAATAATAATACTATGACTGTCCCATTCATCTCCCTCTCCTTCAATTACTTTCCTGCTGCACATTTTGAAGTTGATCTCATGAAGGTTTCTCACTTCCTTCATTTCTTGTCCCTACTTTATTTGTTTGCTAGGTTCAACAAATTGAGAAACAGTATGGAAGACTGAACGAACTACTCCAGAAGCTTCAGGTATAAATATCTTTCTTTTTTTCTTCTGACAACTTTTTCTTAAGAAGGTATTTGCAATAGAATCCTGCAACGGAATTGCACCTAGTTTCCTTGAAAGTGTATAAGAGTACTTCAGAATTTTTGACTTTTTAAAATTAAATTTTCCCGATCTTTACCTTGTTAATGGATATACAAGGACGAATAGAGAGAGATTATTCACCAAGAATTTTTCCCTTTCTTTTGCCTATGCTACAGAGGTATGGGGTCTAAAAATATGGGGAAATTTTCTTATTATGATGTTGGTATTTGGTTCAGGGCCTAAATGGGGAACTGTGTTAGGTTGATTTATCATTTTCTTTAGCGTCTTAGAGACGCTACTTCTATTCTTTACAACTTGCTCATTCTTTGAGCAGCACATGCCCCTTTCTCTTTTATGAGTTCGGTTTTGATGTTGTGTTTTATATGATATATGTTTGATATCTGTGAAATGTAAGGTCGCTTATTTTATTTGTCACTTTGTGTACAATTGATATCTGTGAAATTCTATGGTAACTTATTTCATTTGTCACTTTGTGCATAAGCCTCTTGGTTTAACTGCATGTTTTTCTGCTCCAAGGTCTGACTTTCACATGCAGAGATTTCGTTTTAAAATTCGCAATCCTCGATGTGATGACCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATCTGCATAACCATTTGTTTCTTGAAGTTCTAGGTAAAACATAAATACTTAAGATCTTTCTCCATGCTCACAGGATGCACATGAGGAATCAAAGGCTGTTACAAAAGCTTCTGCTATGAAAGGTAATCCATCTTCTTGCAGTTATAGTGCTCTAGCAAGTGATGTAGCCATTTGTTTTGCATGATTATGACATTCTGGACTCATAGTGGATACTAGATACTCACTCTAGCTCATGTATGCAACCTAGTTTGACTTGTTTGGAGTAAGAAACTCCTAATGTGTTACCAAAGCTGAATTAGAAAATTTCTTCAGTAGGATATTTGAAATGGCAAAATGATTTTGCTTCTGGAAAAAGGCACTGCAAGAAAGTTCAGATTATTTAAGAGAGATTATTATATGTTTTTACGGTTTCCTGCAGGTAGAAATAGGTTAATTATTCTTATTATACCAAAAAATAGAAATTTGAATGAATCAAAACATTAGATAGTTAGATACTCTATACCAATGTATTTGTTCTTTCCTTCATGGATGTATCCCAAATTATGTAACCTTAGTGTAACGTTTTTTGATAACTTCTACAAATAATAATACTCTTTACAGTTCCACCCATCTTTTAAAACTTAAAATTTATTAAGTGATTTGATATTTCAATAGCAAACACATTATTCTTTGTAACGTAGCACATAAAAAGATAGGTAGTAAAAAAGGAGTTCGTTGCATTGAATAAGATTTCTCTTTCTTTAGAGAAGTACCTTTTCCTTTGTTTTTTTGTCATTCATTTTCATAATGAGTTTGTTAATGATATTATTGTAACCTGCAGCAATTAAGCAGCGGATGGAAAAAGATGTTGATGAAGTCGGAAAAATAGCTCGAGTAATCAAATCAAAAATCGAGGAGCTTGATAAAGAAGTGAGTAGTATGAAATGCTTATGTCTCTTAAATTGGTCCTGTTATTTCTTTGTTTTTGATCTATTTTTGTTCTCTTGCAGAATCTAGCCAATAGAAACAAACCAGGTTGTGGTAAAGGATCAGCTGTTGACAGATCAAGAACAGCAACAACAGTGTAATTTTGGCTAATTTTTCTCCTTAGTTCCTCTGATAGTTATATCTTTGTAATTTTGTCACACAATTGTTATTTTGAGATTGTTAAATGGGTATCCCGCAATAACATATTTAAAAGAGATGCTCATACTGGTTGGCTATGGTGTATATGGGCACTATGTTGTTGCTGGAAAAGCAAAAGAATTTGGGGATAGTGTGGGTGAATCAACATTAGAGTTGGTATTATGTCTTTATAGTAAAATGAAGTTTGAATTCTCGAGATTTGTACTGATCAAGAGAGAGAAAAAATGATGGTAGGGGTTGTATTAAGATCAAATGCCTGCCTCGTATATATATACCACCTTATCAAATCATGAAGGTATTAAAATTATACTAACCTTTACTTCTTAATTATTATATGCACACATATGGAGACTTAAGCTAGGAGCTTCTAATTTGTCAATGCTTAACGTATCCGAGAAGTTGATCGATTGAAGCGTTTATTGATCTCTCCTTAGTCTTGCCCTCGTGCATTATTGTGCATTCTTATTATTAATCTTGATATACCTATAGTCCTCACTTGACTTGCTATATTTTTGCAGTTCCTTGAAAAAGAAGTTCAAAGATAAAATGGCTGAGTTTCAGGTACATCAACTGCATTAAGAATGACTTTTGCTCTAGATTTTGCTTTCTCTTACGTTCAGTTGATTATTATGATTGCAGACTTTAAGAGAAAACATCCACCATGAATATCGCGAGGTTGTTGAAAGGCGAGTATTCACAGGTGCCAAAACTTTTGAGTTTGATATTTCTGTGTGGAGTGTAAATGTTTTAAAGCAGATTCTAATTGCTATTCCTTTTTTCTTATCTTTCTCTTTATGTGGTCGACAGTGACGGGTAATCGAGCTGATGAAGAGGTAAATCTTGGGTAGTTTTTGTGAATTATTGGGAACTTAAGTTTCTTTTTGCACATCTTCTTACTGTTCTCGTTTTCTTGTTTCCCTCTATTTTCACCTTCAGACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAAGTATGCTCAACGATTTTTAGAATTTCTTCTTTCCATTAACTTTGAATAACCTGATGTCCATGTACTAGGTTATAGCCTTTTCAAATAGCTCATATGATCAAGATCTCAATGCTTGAGTTATTTATTCTTAAATTTAAAATCCATGTTTGTAGACAGTTTAAATTTCTGTGGGCATTTGGCATTTCACCTGGCGTGTTAACATGAAATTGGTCCACTGGCCATCCGACGCCCCTTAGTGTTGGTTTATTTCAGTTCTTTAACATGCAACTCAGTATTTTGATAGGTTCGTTTTAATCACATACATTAAAGCCCATGGTGCCTTATCTTTGTCTCCTTGCGACATTTTTTACCATGCCAGAAGCTGTTGCTTGCATATACTTGAGTTCTGATACAATTTGTAGATTTTCAAATTCCTAGAAATGGAAGGGAAGGTGGGAAATGACCATTCCAGATGAGTGAGACTTTTACTTCAGGCATCCAGGCACTGCCGAGGTTTCACGTGTGGCGGTGTAGGCAAAAGATAGAGCTAAATGAAGCCTCTTGCCCTATGTTAGATGACTGTAGTATCTTGTGACCATTATAACATCTTGCAAATATCTCTTTTTTAATGTTATGTTGTGTTTATTCCATTACATATTCCCTTTCTTTTAAATGCCAATGCCATATCCCTACTTCTATGAACACGGGAGAAGAAATTCTTAGCTCCTTCTCACTCGTTAGAAACCACCATAAAGTAATTGAGATTTGTCTTAATCTTTACTGTCGTTAGCTTGATGTGGCCAAGTTGACAAAGATCTCTATAATCCTCAAGCTGCTACTGGTAATGCTTGAGCAGTGGATTTCCCTTGACGTGTAGTGTAGCATACAATGACCCATCTAAAAAACGAATTATGCAACATATTGGGATCTTGTTCAGAAGAGAGCAGATAGCAAGGGAATTAGCTGAGAAGTCAGAAAAGAAATATGGAACGAAAATTATCTCCCCATCACCTGATTTTATTTCTCTTTTCTTTTCATTTTCAATGAAATGATATTACAGGCAAACTTTTGTCCTTTTATGTGATAAAGCAGCTCATATACATTTATAATATTGCTAGCATGGCACTTGAAATTTTAGTAATAGTTAATTTATTATACTGGTTCACAATGTTGGCGTCTTGCAGATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAGGTACTATATACTTATACCTTTTAACGGGGAAAGGAAGTACTACTAACGATTTCCTTAGAAAATCTCGATTGAAGAAGTGAAGAGAAAAGACAAAAATTCATTGACGACGACATAAAGAGTTTTTTCCTTTGTTTTTATCTTCTAGTTCTGGACTAGATTTAAGTTCAGAGAACTAAACATAATCTGGTTAGTCCTTCGTATGTTGATGAGTTTGGCTTAAATCACCTCCAACCTGATGCCAACTGAATATATGACATATAAAGGGTTTTTCTCTATATATATGTGTGTGTTTGCATGCTCGTATGTGTCTCTGCACGTGCACATACAGTTCTTGAGGAGTGGTACATTTATAAGTAACGATGCCATGATTGAATGAGTTTCTCGTAGAGGAGTAATGAAACACAATGATGTCTGGTTATAAACTTTGTTCTATTCTGCTATGCAGATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAGGTACTAATATTCTTAAGAATGGAACTACTTAGCATTTGGGTGTGATTATGTTTACATTACCCTCATCGACAACAACCCGAATTTCAGGTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGAATGAGCTTCTTTTTTTCATTTTGAACTTAATGAAGAACTCCA</genome_strand>
        <mrna_strand>GATGATGATAATTTTGATGCCCCAAGGCATCAAAGTAATAGAAATGGAGATGTTGAAATGGGAATACAAATACCAATGAATTCCGGGGAGCTAGGCCTTGATGATTTCTTTAAAAAG......................................................................................................................................................................GTTCAACAAATTGAGAAACAGTATGGAAGACTGAACGAACTACTCCAGAAGCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACATGAGGAATCAAAGGCTGTTACAAAAGCTTCTGCTATGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAAGCAGCGGATGGAAAAAGATGTTGATGAAGTCGGAAAAATAGCTCGAGTAATCAAATCAAAAATCGAGGAGCTTGATAAAGAA................................................................................AATCTAGCCAATAGAAACAAACCAGGTTGTGGTAAAGGATCAGCTGTTGACAGATCAAGAACAGCAACAACAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGAAAAAGAAGTTCAAAGATAAAATGGCTGAGTTTCAG..............................................................................ACTTTAAGAGAAAACATCCACCATGAATATCGCGAGGTTGTTGAAAGGCGAGTATTCACAG...........................................................................................................TGACGGGTAATCGAGCTGATGAAGAG.......................................................................................................ACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAG.......................................................................................GTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGAATGAGCTTCTTTTTTTCATTTTGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710360" ref_strand="+" ref_description="SGN-E710360 [FA55AG07]">
      <seq>cctttagaaatggagatgttgaaatgggaatacaaataccaatgaattccggggagctaggccttgatgatttctttaaaaaggttcaacaaattgagaaacagtatggaagactgaacgaactactccagaagcttcaggatgcacatgaggaatcaaaggctgttacaaaagcttctgctatgaaagcaattaagcagcggatggaaaaagatgttgatgaagtcggaaaaatagctcgagtaatcaaatcaaaaatcgaggagcttgataaagaaaatctagccaatagaaacaaaccaggttgtggtaaaggatcagctgttgacagatcaagaacagcaacaacagtttccttgaaaaagaagttcaaagataaaatggctgactttcagactttaagagaaaacatccaccatgaatatcgcgaggttgttgaaaggcgagtattcacagtgacgggtaatcgagctgatgaagagacaattgataggttgatagagactggggacagtgaacagatattccagaaagctattcagcaacaagggcgaggacaaataatgggcacactagctgaaattcaagagcgccatgatgcagttagagaattaaagaggaagcttcttgagttgccacagatattcctggacataccagcgttggttgatgctcaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="927" stop="6866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1223" g_stop="1305" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1306" i_stop="1471" i_length="166">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1472" g_stop="1528" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="140" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="1529" i_stop="2772" i_length="1244">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2773" g_stop="2821" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="189" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2822" i_stop="3519" i_length="698">
            <donor d_prob="0.814" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3520" g_stop="3608" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="278" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3609" i_stop="3688" i_length="80">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3689" g_stop="3762" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="352" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3763" i_stop="4342" i_length="580">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="4343" g_stop="4385" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="395" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4386" i_stop="4463" i_length="78">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4464" g_stop="4524" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="456" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4525" i_stop="4631" i_length="107">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4632" g_stop="4657" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="482" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4658" i_stop="4760" i_length="103">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4761" g_stop="4838" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="560" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="4839" i_stop="6001" i_length="1163">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="6002" g_stop="6082" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="641" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="6083" i_stop="6527" i_length="445">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="6528" g_stop="6566" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="680" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E710360" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1223" e_stop="1305"/>
          <exon e_start="1472" e_stop="1528"/>
          <exon e_start="2773" e_stop="2821"/>
          <exon e_start="3520" e_stop="3608"/>
          <exon e_start="3689" e_stop="3762"/>
          <exon e_start="4343" e_stop="4385"/>
          <exon e_start="4464" e_stop="4524"/>
          <exon e_start="4632" e_stop="4657"/>
          <exon e_start="4761" e_stop="4838"/>
          <exon e_start="6002" e_stop="6082"/>
          <exon e_start="6528" e_stop="6566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATAGAAATGGAGATGTTGAAATGGGAATACAAATACCAATGAATTCCGGGGAGCTAGGCCTTGATGATTTCTTTAAAAAGGTTTTTGGATGATCTTTTTACTGTTCTTGCATTGGAATAATAATACTATGACTGTCCCATTCATCTCCCTCTCCTTCAATTACTTTCCTGCTGCACATTTTGAAGTTGATCTCATGAAGGTTTCTCACTTCCTTCATTTCTTGTCCCTACTTTATTTGTTTGCTAGGTTCAACAAATTGAGAAACAGTATGGAAGACTGAACGAACTACTCCAGAAGCTTCAGGTATAAATATCTTTCTTTTTTTCTTCTGACAACTTTTTCTTAAGAAGGTATTTGCAATAGAATCCTGCAACGGAATTGCACCTAGTTTCCTTGAAAGTGTATAAGAGTACTTCAGAATTTTTGACTTTTTAAAATTAAATTTTCCCGATCTTTACCTTGTTAATGGATATACAAGGACGAATAGAGAGAGATTATTCACCAAGAATTTTTCCCTTTCTTTTGCCTATGCTACAGAGGTATGGGGTCTAAAAATATGGGGAAATTTTCTTATTATGATGTTGGTATTTGGTTCAGGGCCTAAATGGGGAACTGTGTTAGGTTGATTTATCATTTTCTTTAGCGTCTTAGAGACGCTACTTCTATTCTTTACAACTTGCTCATTCTTTGAGCAGCACATGCCCCTTTCTCTTTTATGAGTTCGGTTTTGATGTTGTGTTTTATATGATATATGTTTGATATCTGTGAAATGTAAGGTCGCTTATTTTATTTGTCACTTTGTGTACAATTGATATCTGTGAAATTCTATGGTAACTTATTTCATTTGTCACTTTGTGCATAAGCCTCTTGGTTTAACTGCATGTTTTTCTGCTCCAAGGTCTGACTTTCACATGCAGAGATTTCGTTTTAAAATTCGCAATCCTCGATGTGATGACCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATCTGCATAACCATTTGTTTCTTGAAGTTCTAGGTAAAACATAAATACTTAAGATCTTTCTCCATGCTCACAGGATGCACATGAGGAATCAAAGGCTGTTACAAAAGCTTCTGCTATGAAAGGTAATCCATCTTCTTGCAGTTATAGTGCTCTAGCAAGTGATGTAGCCATTTGTTTTGCATGATTATGACATTCTGGACTCATAGTGGATACTAGATACTCACTCTAGCTCATGTATGCAACCTAGTTTGACTTGTTTGGAGTAAGAAACTCCTAATGTGTTACCAAAGCTGAATTAGAAAATTTCTTCAGTAGGATATTTGAAATGGCAAAATGATTTTGCTTCTGGAAAAAGGCACTGCAAGAAAGTTCAGATTATTTAAGAGAGATTATTATATGTTTTTACGGTTTCCTGCAGGTAGAAATAGGTTAATTATTCTTATTATACCAAAAAATAGAAATTTGAATGAATCAAAACATTAGATAGTTAGATACTCTATACCAATGTATTTGTTCTTTCCTTCATGGATGTATCCCAAATTATGTAACCTTAGTGTAACGTTTTTTGATAACTTCTACAAATAATAATACTCTTTACAGTTCCACCCATCTTTTAAAACTTAAAATTTATTAAGTGATTTGATATTTCAATAGCAAACACATTATTCTTTGTAACGTAGCACATAAAAAGATAGGTAGTAAAAAAGGAGTTCGTTGCATTGAATAAGATTTCTCTTTCTTTAGAGAAGTACCTTTTCCTTTGTTTTTTTGTCATTCATTTTCATAATGAGTTTGTTAATGATATTATTGTAACCTGCAGCAATTAAGCAGCGGATGGAAAAAGATGTTGATGAAGTCGGAAAAATAGCTCGAGTAATCAAATCAAAAATCGAGGAGCTTGATAAAGAAGTGAGTAGTATGAAATGCTTATGTCTCTTAAATTGGTCCTGTTATTTCTTTGTTTTTGATCTATTTTTGTTCTCTTGCAGAATCTAGCCAATAGAAACAAACCAGGTTGTGGTAAAGGATCAGCTGTTGACAGATCAAGAACAGCAACAACAGTGTAATTTTGGCTAATTTTTCTCCTTAGTTCCTCTGATAGTTATATCTTTGTAATTTTGTCACACAATTGTTATTTTGAGATTGTTAAATGGGTATCCCGCAATAACATATTTAAAAGAGATGCTCATACTGGTTGGCTATGGTGTATATGGGCACTATGTTGTTGCTGGAAAAGCAAAAGAATTTGGGGATAGTGTGGGTGAATCAACATTAGAGTTGGTATTATGTCTTTATAGTAAAATGAAGTTTGAATTCTCGAGATTTGTACTGATCAAGAGAGAGAAAAAATGATGGTAGGGGTTGTATTAAGATCAAATGCCTGCCTCGTATATATATACCACCTTATCAAATCATGAAGGTATTAAAATTATACTAACCTTTACTTCTTAATTATTATATGCACACATATGGAGACTTAAGCTAGGAGCTTCTAATTTGTCAATGCTTAACGTATCCGAGAAGTTGATCGATTGAAGCGTTTATTGATCTCTCCTTAGTCTTGCCCTCGTGCATTATTGTGCATTCTTATTATTAATCTTGATATACCTATAGTCCTCACTTGACTTGCTATATTTTTGCAGTTCCTTGAAAAAGAAGTTCAAAGATAAAATGGCTGAGTTTCAGGTACATCAACTGCATTAAGAATGACTTTTGCTCTAGATTTTGCTTTCTCTTACGTTCAGTTGATTATTATGATTGCAGACTTTAAGAGAAAACATCCACCATGAATATCGCGAGGTTGTTGAAAGGCGAGTATTCACAGGTGCCAAAACTTTTGAGTTTGATATTTCTGTGTGGAGTGTAAATGTTTTAAAGCAGATTCTAATTGCTATTCCTTTTTTCTTATCTTTCTCTTTATGTGGTCGACAGTGACGGGTAATCGAGCTGATGAAGAGGTAAATCTTGGGTAGTTTTTGTGAATTATTGGGAACTTAAGTTTCTTTTTGCACATCTTCTTACTGTTCTCGTTTTCTTGTTTCCCTCTATTTTCACCTTCAGACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAAGTATGCTCAACGATTTTTAGAATTTCTTCTTTCCATTAACTTTGAATAACCTGATGTCCATGTACTAGGTTATAGCCTTTTCAAATAGCTCATATGATCAAGATCTCAATGCTTGAGTTATTTATTCTTAAATTTAAAATCCATGTTTGTAGACAGTTTAAATTTCTGTGGGCATTTGGCATTTCACCTGGCGTGTTAACATGAAATTGGTCCACTGGCCATCCGACGCCCCTTAGTGTTGGTTTATTTCAGTTCTTTAACATGCAACTCAGTATTTTGATAGGTTCGTTTTAATCACATACATTAAAGCCCATGGTGCCTTATCTTTGTCTCCTTGCGACATTTTTTACCATGCCAGAAGCTGTTGCTTGCATATACTTGAGTTCTGATACAATTTGTAGATTTTCAAATTCCTAGAAATGGAAGGGAAGGTGGGAAATGACCATTCCAGATGAGTGAGACTTTTACTTCAGGCATCCAGGCACTGCCGAGGTTTCACGTGTGGCGGTGTAGGCAAAAGATAGAGCTAAATGAAGCCTCTTGCCCTATGTTAGATGACTGTAGTATCTTGTGACCATTATAACATCTTGCAAATATCTCTTTTTTAATGTTATGTTGTGTTTATTCCATTACATATTCCCTTTCTTTTAAATGCCAATGCCATATCCCTACTTCTATGAACACGGGAGAAGAAATTCTTAGCTCCTTCTCACTCGTTAGAAACCACCATAAAGTAATTGAGATTTGTCTTAATCTTTACTGTCGTTAGCTTGATGTGGCCAAGTTGACAAAGATCTCTATAATCCTCAAGCTGCTACTGGTAATGCTTGAGCAGTGGATTTCCCTTGACGTGTAGTGTAGCATACAATGACCCATCTAAAAAACGAATTATGCAACATATTGGGATCTTGTTCAGAAGAGAGCAGATAGCAAGGGAATTAGCTGAGAAGTCAGAAAAGAAATATGGAACGAAAATTATCTCCCCATCACCTGATTTTATTTCTCTTTTCTTTTCATTTTCAATGAAATGATATTACAGGCAAACTTTTGTCCTTTTATGTGATAAAGCAGCTCATATACATTTATAATATTGCTAGCATGGCACTTGAAATTTTAGTAATAGTTAATTTATTATACTGGTTCACAATGTTGGCGTCTTGCAGATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAGGTACTATATACTTATACCTTTTAACGGGGAAAGGAAGTACTACTAACGATTTCCTTAGAAAATCTCGATTGAAGAAGTGAAGAGAAAAGACAAAAATTCATTGACGACGACATAAAGAGTTTTTTCCTTTGTTTTTATCTTCTAGTTCTGGACTAGATTTAAGTTCAGAGAACTAAACATAATCTGGTTAGTCCTTCGTATGTTGATGAGTTTGGCTTAAATCACCTCCAACCTGATGCCAACTGAATATATGACATATAAAGGGTTTTTCTCTATATATATGTGTGTGTTTGCATGCTCGTATGTGTCTCTGCACGTGCACATACAGTTCTTGAGGAGTGGTACATTTATAAGTAACGATGCCATGATTGAATGAGTTTCTCGTAGAGGAGTAATGAAACACAATGATGTCTGGTTATAAACTTTGTTCTATTCTGCTATGCAGATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGA</genome_strand>
        <mrna_strand>CCTTTAGAAATGGAGATGTTGAAATGGGAATACAAATACCAATGAATTCCGGGGAGCTAGGCCTTGATGATTTCTTTAAAAAG......................................................................................................................................................................GTTCAACAAATTGAGAAACAGTATGGAAGACTGAACGAACTACTCCAGAAGCTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACATGAGGAATCAAAGGCTGTTACAAAAGCTTCTGCTATGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTAAGCAGCGGATGGAAAAAGATGTTGATGAAGTCGGAAAAATAGCTCGAGTAATCAAATCAAAAATCGAGGAGCTTGATAAAGAA................................................................................AATCTAGCCAATAGAAACAAACCAGGTTGTGGTAAAGGATCAGCTGTTGACAGATCAAGAACAGCAACAACAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTTGAAAAAGAAGTTCAAAGATAAAATGGCTGACTTTCAG..............................................................................ACTTTAAGAGAAAACATCCACCATGAATATCGCGAGGTTGTTGAAAGGCGAGTATTCACAG...........................................................................................................TGACGGGTAATCGAGCTGATGAAGAG.......................................................................................................ACAATTGATAGGTTGATAGAGACTGGGGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAAAGAGGAAGCTTCTTGAGTTGCCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCTGGACATACCAGCGTTGGTTGATGCTCAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244207" ref_strand="+" ref_description="SGN-E244207 [cLEE-1-P6]">
      <seq>ccaagtgcgcaaaggtgtcacattctaacatgtttgtgttctccctttcagttaggggctttcagagttacatatctgtatcagaatcaatgaagttataatgtgtttaatgtgtcgctttcttcctgttgaccacctgatttataagcctttgcagctttatattttaattcaattccaacaaacttctacaattggaagaatcggtattttgaagtgcatgtcttgcataatttaatgcgatatttgagcagatataagttgtcatctctcggactctcgcaacttcattttcaccattatgaccttcagctgtttagtaatatagtaaagttctgagagacaatttgtattcctctacattactagaatgttcttccatatgccccctctatttcatatttttctctcaatgtgtacttcaactaacttagggttcatgtggttaattaagaattatagttcaatttgtaggttaattagcacaatatatacataagccaaatgagcttaaaataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="1881" stop="3002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2181" g_stop="2702" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="521" r_length="521" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E244207" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2181" e_stop="2702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</genome_strand>
        <mrna_strand>CCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTA-GGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTTCACCATTATGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294953" ref_strand="+" ref_description="SGN-E294953 [cLET-17-J13]">
      <seq>cgcgaggttgttgaaaggcgagtattcacagtgacgggtaatcgagctgatgaagagacaattgataggttgatagagactggagacagtgaacagatattccagaaagctattcagcaacaagggcgaggacaaataatgggcacactagctgaaattcaagagcgccatgatgcagttagagaattagagaggaagcttcttgagttgcaacagatattcctggacatagcagtgttggttgatgctcaaggagacatgcttgataatatagaatcacaggtttcaactgctgtagaccatgtacaatcagggactactgctctacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatcctcctcataattgtcgcaattatcgtcgttggtgtgctcaagccatggcagagtaacaagggtgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="4194" stop="7230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4494" g_stop="4524" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4525" i_stop="4631" i_length="107">
            <donor d_prob="0.828" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4632" g_stop="4657" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="57" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4658" i_stop="4760" i_length="103">
            <donor d_prob="0.919" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4761" g_stop="4838" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="135" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4839" i_stop="6001" i_length="1163">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6002" g_stop="6082" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="216" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6083" i_stop="6527" i_length="445">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6528" g_stop="6593" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="282" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6681" g_stop="6930" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="532" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E294953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4494" e_stop="4524"/>
          <exon e_start="4632" e_stop="4657"/>
          <exon e_start="4761" e_stop="4838"/>
          <exon e_start="6002" e_stop="6082"/>
          <exon e_start="6528" e_stop="6593"/>
          <exon e_start="6681" e_stop="6930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGAGGTTGTTGAAAGGCGAGTATTCACAGGTGCCAAAACTTTTGAGTTTGATATTTCTGTGTGGAGTGTAAATGTTTTAAAGCAGATTCTAATTGCTATTCCTTTTTTCTTATCTTTCTCTTTATGTGGTCGACAGTGACGGGTAATCGAGCTGATGAAGAGGTAAATCTTGGGTAGTTTTTGTGAATTATTGGGAACTTAAGTTTCTTTTTGCACATCTTCTTACTGTTCTCGTTTTCTTGTTTCCCTCTATTTTCACCTTCAGACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAAGTATGCTCAACGATTTTTAGAATTTCTTCTTTCCATTAACTTTGAATAACCTGATGTCCATGTACTAGGTTATAGCCTTTTCAAATAGCTCATATGATCAAGATCTCAATGCTTGAGTTATTTATTCTTAAATTTAAAATCCATGTTTGTAGACAGTTTAAATTTCTGTGGGCATTTGGCATTTCACCTGGCGTGTTAACATGAAATTGGTCCACTGGCCATCCGACGCCCCTTAGTGTTGGTTTATTTCAGTTCTTTAACATGCAACTCAGTATTTTGATAGGTTCGTTTTAATCACATACATTAAAGCCCATGGTGCCTTATCTTTGTCTCCTTGCGACATTTTTTACCATGCCAGAAGCTGTTGCTTGCATATACTTGAGTTCTGATACAATTTGTAGATTTTCAAATTCCTAGAAATGGAAGGGAAGGTGGGAAATGACCATTCCAGATGAGTGAGACTTTTACTTCAGGCATCCAGGCACTGCCGAGGTTTCACGTGTGGCGGTGTAGGCAAAAGATAGAGCTAAATGAAGCCTCTTGCCCTATGTTAGATGACTGTAGTATCTTGTGACCATTATAACATCTTGCAAATATCTCTTTTTTAATGTTATGTTGTGTTTATTCCATTACATATTCCCTTTCTTTTAAATGCCAATGCCATATCCCTACTTCTATGAACACGGGAGAAGAAATTCTTAGCTCCTTCTCACTCGTTAGAAACCACCATAAAGTAATTGAGATTTGTCTTAATCTTTACTGTCGTTAGCTTGATGTGGCCAAGTTGACAAAGATCTCTATAATCCTCAAGCTGCTACTGGTAATGCTTGAGCAGTGGATTTCCCTTGACGTGTAGTGTAGCATACAATGACCCATCTAAAAAACGAATTATGCAACATATTGGGATCTTGTTCAGAAGAGAGCAGATAGCAAGGGAATTAGCTGAGAAGTCAGAAAAGAAATATGGAACGAAAATTATCTCCCCATCACCTGATTTTATTTCTCTTTTCTTTTCATTTTCAATGAAATGATATTACAGGCAAACTTTTGTCCTTTTATGTGATAAAGCAGCTCATATACATTTATAATATTGCTAGCATGGCACTTGAAATTTTAGTAATAGTTAATTTATTATACTGGTTCACAATGTTGGCGTCTTGCAGATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAGGTACTATATACTTATACCTTTTAACGGGGAAAGGAAGTACTACTAACGATTTCCTTAGAAAATCTCGATTGAAGAAGTGAAGAGAAAAGACAAAAATTCATTGACGACGACATAAAGAGTTTTTTCCTTTGTTTTTATCTTCTAGTTCTGGACTAGATTTAAGTTCAGAGAACTAAACATAATCTGGTTAGTCCTTCGTATGTTGATGAGTTTGGCTTAAATCACCTCCAACCTGATGCCAACTGAATATATGACATATAAAGGGTTTTTCTCTATATATATGTGTGTGTTTGCATGCTCGTATGTGTCTCTGCACGTGCACATACAGTTCTTGAGGAGTGGTACATTTATAAGTAACGATGCCATGATTGAATGAGTTTCTCGTAGAGGAGTAATGAAACACAATGATGTCTGGTTATAAACTTTGTTCTATTCTGCTATGCAGATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAGGTACTAATATTCTTAAGAATGGAACTACTTAGCATTTGGGTGTGATTATGTTTACATTACCCTCATCGACAACAACCCGAATTTCAGGTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACA</genome_strand>
        <mrna_strand>CGCGAGGTTGTTGAAAGGCGAGTATTCACAG...........................................................................................................TGACGGGTAATCGAGCTGATGAAGAG.......................................................................................................ACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAG.......................................................................................GTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369442" ref_strand="+" ref_description="SGN-E369442 [TUS-23-O3](-)">
      <seq>attgataggttgatagagactggagacagtgaacagatattccagaaagctattcagcaacaagggcgaggacaaataatgggcacactagctgaaattcaagagcgccatgatgcagttagagaattagagaggaagcttcttgagttgcaacagatattcctggacatagcagtgttggttgatgctcaaggagacatgcttgataatatagaatcacaggtttcaactgctgtagaccatgtacaatcagggactactgctttacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatcctcctcataattgtcgcaattatcgtcgttggtgtgctcaagccatggcagagtaacaagggtgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaacatttttttggttttgtacatgttgaaccttggggcttgcctctctatatatagtttgaagtgtgattgaaacatgtaacctattctttataattttgatttttatttggttggaattgaaagaaccctatttggatcggaaaaatacatttatcacaaattttaatgtactccaatgtctttgcttgaatgagcttctttttttcaatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="4464" stop="7442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4764" g_stop="4838" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4839" i_stop="6001" i_length="1163">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6002" g_stop="6082" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="156" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6083" i_stop="6527" i_length="445">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6528" g_stop="6593" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="222" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6681" g_stop="7154" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="696" r_length="474" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E369442" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4764" e_stop="4838"/>
          <exon e_start="6002" e_stop="6082"/>
          <exon e_start="6528" e_stop="6593"/>
          <exon e_start="6681" e_stop="7154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAAGTATGCTCAACGATTTTTAGAATTTCTTCTTTCCATTAACTTTGAATAACCTGATGTCCATGTACTAGGTTATAGCCTTTTCAAATAGCTCATATGATCAAGATCTCAATGCTTGAGTTATTTATTCTTAAATTTAAAATCCATGTTTGTAGACAGTTTAAATTTCTGTGGGCATTTGGCATTTCACCTGGCGTGTTAACATGAAATTGGTCCACTGGCCATCCGACGCCCCTTAGTGTTGGTTTATTTCAGTTCTTTAACATGCAACTCAGTATTTTGATAGGTTCGTTTTAATCACATACATTAAAGCCCATGGTGCCTTATCTTTGTCTCCTTGCGACATTTTTTACCATGCCAGAAGCTGTTGCTTGCATATACTTGAGTTCTGATACAATTTGTAGATTTTCAAATTCCTAGAAATGGAAGGGAAGGTGGGAAATGACCATTCCAGATGAGTGAGACTTTTACTTCAGGCATCCAGGCACTGCCGAGGTTTCACGTGTGGCGGTGTAGGCAAAAGATAGAGCTAAATGAAGCCTCTTGCCCTATGTTAGATGACTGTAGTATCTTGTGACCATTATAACATCTTGCAAATATCTCTTTTTTAATGTTATGTTGTGTTTATTCCATTACATATTCCCTTTCTTTTAAATGCCAATGCCATATCCCTACTTCTATGAACACGGGAGAAGAAATTCTTAGCTCCTTCTCACTCGTTAGAAACCACCATAAAGTAATTGAGATTTGTCTTAATCTTTACTGTCGTTAGCTTGATGTGGCCAAGTTGACAAAGATCTCTATAATCCTCAAGCTGCTACTGGTAATGCTTGAGCAGTGGATTTCCCTTGACGTGTAGTGTAGCATACAATGACCCATCTAAAAAACGAATTATGCAACATATTGGGATCTTGTTCAGAAGAGAGCAGATAGCAAGGGAATTAGCTGAGAAGTCAGAAAAGAAATATGGAACGAAAATTATCTCCCCATCACCTGATTTTATTTCTCTTTTCTTTTCATTTTCAATGAAATGATATTACAGGCAAACTTTTGTCCTTTTATGTGATAAAGCAGCTCATATACATTTATAATATTGCTAGCATGGCACTTGAAATTTTAGTAATAGTTAATTTATTATACTGGTTCACAATGTTGGCGTCTTGCAGATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAGGTACTATATACTTATACCTTTTAACGGGGAAAGGAAGTACTACTAACGATTTCCTTAGAAAATCTCGATTGAAGAAGTGAAGAGAAAAGACAAAAATTCATTGACGACGACATAAAGAGTTTTTTCCTTTGTTTTTATCTTCTAGTTCTGGACTAGATTTAAGTTCAGAGAACTAAACATAATCTGGTTAGTCCTTCGTATGTTGATGAGTTTGGCTTAAATCACCTCCAACCTGATGCCAACTGAATATATGACATATAAAGGGTTTTTCTCTATATATATGTGTGTGTTTGCATGCTCGTATGTGTCTCTGCACGTGCACATACAGTTCTTGAGGAGTGGTACATTTATAAGTAACGATGCCATGATTGAATGAGTTTCTCGTAGAGGAGTAATGAAACACAATGATGTCTGGTTATAAACTTTGTTCTATTCTGCTATGCAGATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAGGTACTAATATTCTTAAGAATGGAACTACTTAGCATTTGGGTGTGATTATGTTTACATTACCCTCATCGACAACAACCCGAATTTCAGGTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGAATGAGCTTCTTTTTTTCATTTTGAACTTAATGAAGAA</genome_strand>
        <mrna_strand>ATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAG.......................................................................................GTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTTTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTTTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATTTTGATTTTTATTTGGTTGGAATTGAAAGAACCCTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGAATGAGCTTCTTTTTTTCAATTTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250875" ref_strand="-" ref_description="SGN-E250875 [cLEG-13-A13]">
      <seq>agtgttggttgatgctcaaggacacatgcttgataatatagaatcacaggtttcaactgctgtagaccatgtacaatcagggattactgctctacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatcctcctcataattgtcgcaattatcgtcgttggtgtgctcaagccatgtcagagtaacaagggtgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaacattttcttggttttgtacatgttgaaccttggggcttgcctctatatatatagtttgaagtgtgattgaaacatgtaacctattctttataatcttgatttttatttggttggaattgagagaacactatttggatgggaaccatacatttatcacaaattctcatgtagtccaatgtatttgcttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="6245" stop="7418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6545" g_stop="6593" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6681" g_stop="7117" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="486" r_length="437" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="487" polyA_stop="497"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E250875" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250875" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="6545" e_stop="6593"/>
          <exon e_start="6681" e_stop="7117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAGGTACTAATATTCTTAAGAATGGAACTACTTAGCATTTGGGTGTGATTATGTTTACATTACCCTCATCGACAACAACCCGAATTTCAGGTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGA</genome_strand>
        <mrna_strand>AGTGTTGGTTGATGCTCAAGGACACATGCTTGATAATATAGAATCACAG.......................................................................................GTTTCAACTGCTGTAGACCATGTACAATCAGGGATTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGTCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTATATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATGGGAACCATACATTTATCACAAATTCTCATGTAGTCCAATGTATTTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316815" ref_strand="+" ref_description="SGN-E316815 [cTOB-6-I9]">
      <seq>gaatcacaggtttgaactgctgtagaccatgtacaatcagggactactgctctacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatccttctaataattgacgcaatcatcgttgttggtgtgctcaagccatggcaaagaaacaagggcgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaacattttattggttttgtacatgtagaaccttgaggcttgcctctctatatatagtttgaagtgtgattgaaacatgtaacctatgctgtataatattgatttttatttggttggaagagagagaacactatttggatcggaaaaatacattcatcacaaattttaatgtactgcaaagtctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="6372" stop="7413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6585" g_stop="6593" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6681" g_stop="7113" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="442" r_length="433" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E316815" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6585" e_stop="6593"/>
          <exon e_start="6681" e_stop="7113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCACAGGTACTAATATTCTTAAGAATGGAACTACTTAGCATTTGGGTGTGATTATGTTTACATTACCCTCATCGACAACAACCCGAATTTCAGGTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGC</genome_strand>
        <mrna_strand>GAATCACAG.......................................................................................GTTTGAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTTCTAATAATTGACGCAATCATCGTTGTTGGTGTGCTCAAGCCATGGCAAAGAAACAAGGGCGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTATTGGTTTTGTACATGTAGAACCTTGAGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATGCTGTATAATATTGATTTTTATTTGGTTGGAAGAGAGAGAACACTATTTGGATCGGAAAAATACATTCATCACAAATTTTAATGTACTGCAAAGTCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E223588" ref_strand="+" ref_description="SGN-E223588 [cLEL-14-O24](-)">
      <seq>cagggactactgctctacaaaaggcaaagaaacttcaaaagaattcaagaaaatggatgtgctttgccatcatgatcctcctcataattgtcgcaattatcgtcgttggtgtgctcaagccatggcagagtaacaagggtgcttaacttattaataatcccacatgagcaatgtatagatacatgatgtatactatcattgcacatgctattcattacaacattttcttggttttgtacatgttgaaccttggggcttgcctctctatatatagtttgaagtgtgattgaaacatgtaacctattctttataatcttgatttttatttggttggaattgagagaacactatttggatcggaaaaatacatttatcacaaattttaatgtactccaatgtctttgcttgcaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="6409" stop="7418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6709" g_stop="7117" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="430"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E223588" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6709" e_stop="7117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGA</genome_strand>
        <mrna_strand>CAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315863" ref_strand="+" ref_description="SGN-E315863 [cTOA-26-O19]">
      <seq>aaacattacactttttacactaaaatggagacagcgagagacaccgtacagcacgacgccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatcttccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtgaagtgcaaagtggtagggcttccgagctcttgggtttacgtccatgcgcttttaggccagatcactccagcaaactaggcaatgaatttcgactgtttacaaactatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7358" stop="11188"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7658" g_stop="7999" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="501" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10361" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="583" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10775" g_stop="10888" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="697" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E315863" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7658" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10361"/>
          <exon e_start="10775" e_stop="10888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCTCTGCCTGTGTTCATTCTTCATGGTTGTCATCAAACTGTTCACTAATTTTATTAGTTGCAAACATTATGTTGATGAAAAAGTTGAAACTATCAAATGAGTTAGCATCAAGGTTTATCGATTTTCAGACGCCTCCTAAGCAAAAAGAGGAACTTTTTTTGAAGCAGAAATTACTGAAGAAAAGAAAGGAGAAAGAGTGGAGAAAATGAAGAAGGATATCCTGTCTTTAAAATAACCAGAGTAAATATGCCTCAAATGTTATCACTTCTCTTTCTCTTTTGGACATGCAGGTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACC</genome_strand>
        <mrna_strand>AAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265744" ref_strand="+" ref_description="SGN-E265744 [cLEI-11-I16]">
      <seq>cattacactttttacactaaaatggagacagcgagagacaccgtacagcacgacgccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatcttccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtgaagtgcaaagtggtaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7361" stop="11095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7661" g_stop="7999" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="498" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10361" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="580" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10775" g_stop="10795" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="601" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E265744" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7661" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10361"/>
          <exon e_start="10775" e_stop="10795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCTCTGCCTGTGTTCATTCTTCATGGTTGTCATCAAACTGTTCACTAATTTTATTAGTTGCAAACATTATGTTGATGAAAAAGTTGAAACTATCAAATGAGTTAGCATCAAGGTTTATCGATTTTCAGACGCCTCCTAAGCAAAAAGAGGAACTTTTTTTGAAGCAGAAATTACTGAAGAAAAGAAAGGAGAAAGAGTGGAGAAAATGAAGAAGGATATCCTGTCTTTAAAATAACCAGAGTAAATATGCCTCAAATGTTATCACTTCTCTTTCTCTTTTGGACATGCAGGTGAAGTGCAAAGTGGTAGGG</genome_strand>
        <mrna_strand>CATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGTGGTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727707" ref_strand="+" ref_description="SGN-E727707 [LA15CA08]">
      <seq>gtgagagacaccgtacagcacgacgccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcatagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatcttccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtgaagtgcaaagtggtagggcttccgagctcttgggtttacgtccatgcgcttttaggccagatcactccagcaaactaggcaatgaatttcgactgtttacaaactatgacccagggacaaggctaggtggctgggagcaggtgtaacaaacacttctccaattggaaatcttcttctccaaagaaaccgtaggttgacattggtttgcaatagaagttttttcaaacatactttgaatctacacatccttccatggaatatcatctctaaatcttacctaaacatatctgaaagagtacaaaatattactatgattatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7391" stop="11406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7691" g_stop="7999" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="468" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10361" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="550" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10775" g_stop="11106" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="874" r_length="324" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E727707" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7691" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10361"/>
          <exon e_start="10775" e_stop="11106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCTCTGCCTGTGTTCATTCTTCATGGTTGTCATCAAACTGTTCACTAATTTTATTAGTTGCAAACATTATGTTGATGAAAAAGTTGAAACTATCAAATGAGTTAGCATCAAGGTTTATCGATTTTCAGACGCCTCCTAAGCAAAAAGAGGAACTTTTTTTGAAGCAGAAATTACTGAAGAAAAGAAAGGAGAAAGAGTGGAGAAAATGAAGAAGGATATCCTGTCTTTAAAATAACCAGAGTAAATATGCCTCAAATGTTATCACTTCTCTTTCTCTTTTGGACATGCAGGTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCATAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCTAAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATA</genome_strand>
        <mrna_strand>GTGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCATAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCGTAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCT-AA--A---TC--TTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367602" ref_strand="+" ref_description="SGN-E367602 [cLPT-14-C17]">
      <seq>acagcacgacgccgttttgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcatagcccaacggttgaggaagcttcttcagctgctgcggaggatgacgtggcgctggtctccgaggattggcgggtaagccacttctggtataaccgcgaaacagctgaaactgtcgctaatgaaggtctcaatctctgtcgatcgattgattctgcggcgattgcctgcattgcttgtggccacactgtatgctgatctcaagaaaattgaccctaatgcacctgcacaaattctctagtatgacaaacgatttgaacagtatggaaatcctgcttacctggtgagagctgatatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7405" stop="9530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7705" g_stop="7999" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9116" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="360" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9117" i_stop="9197" i_length="81">
            <donor d_prob="0.313" d_score="0.96"/>
            <acceptor a_prob="0.863" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9198" g_stop="9230" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="393" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E367602" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7705" e_stop="7999"/>
          <exon e_start="9053" e_stop="9116"/>
          <exon e_start="9198" e_stop="9230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGT-CCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCT</genome_strand>
        <mrna_strand>ACAGCACGACGCCGTTTTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCATAGCCCAACGGTTGAGGAAGCTTCTTCAGCTGCTGCGGAGGATGACGTGGCGCTGGTCTCCGAGGATTGGCGGGTAAGCCACTTCTGGTATAACCGCGAAACAGCTGAAACTGTCGCTAATGAAGGTCTCAATCTCTGTCGATCGATTGATTCTGCGGCGATTGCCTGCATTGCTTGTGGCCACACTGTATGCTGATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCTAGTATGACAAACGATTTGAACAGTATGGAA.................................................................................ATCCTGCTTACCTGGTGAGAGCTGATATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688680" ref_strand="+" ref_description="SGN-E688680 [t3_tus_54_G17]">
      <seq>gccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacnacctaccagaagatcttccttcttcaatgaaacactcatatccnataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgcntaaaacatttcttttctcacgagaccaggacaagcctacttggcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7415" stop="10652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7715" g_stop="7999" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="444" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10354" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="519" r_length="75" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E688680" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7715" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTA</genome_strand>
        <mrna_strand>GCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACNACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCNATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCNTAAAACATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550926" ref_strand="+" ref_description="SGN-E550926 [TUS-54-G17]">
      <seq>gccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacnacctaccagaagatcttccttcttcaatgaaacactcatatccnataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7415" stop="10634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7715" g_stop="7999" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="444" r_length="159" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10334" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="499" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E550926" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7715" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAG</genome_strand>
        <mrna_strand>GCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACNACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCNATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254262" ref_strand="+" ref_description="SGN-E254262 [cLEG-27-G24]">
      <seq>ccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgagaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatcttccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtacatactgaattttatgcagtgttttacgacttggtctcccgttggctgtcgttcatcatgttaatggtcattgaatctagttattgttttttaaggatccttaaacaatgaatccagttatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7416" stop="10787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7716" g_stop="7999" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="443" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10487" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="651" r_length="208" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E254262" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7716" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCT</genome_strand>
        <mrna_strand>CCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGAGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233971" ref_strand="+" ref_description="SGN-E233971 [cLEL-8-L84](-)">
      <seq>aaatcatcttcagttacctaaacatatctgaaagagtacaaaatattactatgattttatagttgtatcttgtatgtattctggtttcgcttgagttacttgtttctttctataggaaccatttaaggtcctgccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="10746" stop="11483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11046" g_stop="11172" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11173" i_stop="11298" i_length="126">
            <donor d_prob="0.652" d_score="1.00"/>
            <acceptor a_prob="0.901" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11299" g_stop="11324" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="153" r_length="26" r_score="0.577"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E233971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11046" e_stop="11172"/>
          <exon e_start="11299" e_stop="11324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAGGTCCTGGAAAACCTTCTGACCTCTTACTCCTTTAAATTACTCATGTATTTATTTGCATTTGCCATGCTCAATTTGTTGCACATTTTAGTTACATTCAGGTTGGTTTCTTCTTCCTTGATTGTGAAGGTCTCTCTTTAAAGAAGAAACAAACT</genome_strand>
        <mrna_strand>AAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAG..............................................................................................................................GTCCTGCCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725881" ref_strand="+" ref_description="SGN-E725881 [LA08CE04]">
      <seq>aaattggaaatctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgccttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtacctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattggtctgttggccgttagcaatgccttactccatcttcttatagcattgtttgatgcccataatccccttcatccttatccatactttatggacgaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13649" stop="16898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13949" g_stop="14019" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="237" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16598" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="467" r_length="230" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E725881" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13949" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGT</genome_strand>
        <mrna_strand>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGCCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTACCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGGTCTGTTGGCCGTTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTTGATGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553830" ref_strand="+" ref_description="SGN-E553830 [cTSC-2-F6]">
      <seq>tggaaatctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactggtggtttttcagcttgttatgactaatgtctctttacttggacatctttgtggtattttgcctggatttgcatatacatatggattgttcaatgtcttaatacctgggacatctttcttctcggctattgaatcttccacttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13653" stop="17676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13953" g_stop="14019" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="233" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="537" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="570" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17144" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="662" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160">
            <donor d_prob="0.837" d_score="0.98"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17305" g_stop="17376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="734" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E553830" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13953" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17144"/>
          <exon e_start="17305" e_stop="17376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTGGATTTGCATGTAAGTTACTTCCATTATGCTGGACCCTCTTCAAGTTTTTCAAATTCTATTCTATGTTATTTTTGGTATCATGATAATTATATGAACAATCTTTATATATTTGTGGTCGCTTAACTTATAATTTTTTTTCTTTTTTCCTTCTTTTTCTTGATGGTACCAGATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</genome_strand>
        <mrna_strand>TGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGCCTGGATTTGCAT................................................................................................................................................................ATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E317970" ref_strand="+" ref_description="SGN-E317970 [cTOA-30-B11]">
      <seq>ggaaatctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttgggagcccataatccccttcatccttatccatactttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13654" stop="16888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13954" g_stop="14019" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="232" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16588" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="452" r_length="220" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E317970" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13954" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTAT</genome_strand>
        <mrna_strand>GGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGGAGCCCATAATCCCCTTCATCCTTATCCATACTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301266" ref_strand="+" ref_description="SGN-E301266 [cLEW-24-H17]">
      <seq>gaaatctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataagtttctcagggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13655" stop="17371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13955" g_stop="14019" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="231" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="535" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="568" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17071" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="587" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E301266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13955" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTG</genome_strand>
        <mrna_strand>GAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAAGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301360" ref_strand="+" ref_description="SGN-E301360 [cLEW-24-J1]">
      <seq>gaaatctctgaataagaagaataagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataagtttctcaaggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13655" stop="17370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13955" g_stop="14019" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="231" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="535" r_length="304" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="568" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17070" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="586" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E301360" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13955" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACT</genome_strand>
        <mrna_strand>GAAATCTCTGAATAAGAAGAATAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAAGTTTCTCAAGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267062" ref_strand="+" ref_description="SGN-E267062 [cLEI-4-A16]">
      <seq>tctgaagaagaagaagaagaaaaaactcagcgaaaatgacaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttcatggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgctggttgcccataatccccttcatccttatccatactttatggacgagtgtgctatacgtctctcagggatcttattttcaatgattgtgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13661" stop="16941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13961" g_stop="14019" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="226" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16641" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="499" r_length="273" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E267062" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13961" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTC-TGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGG</genome_strand>
        <mrna_strand>TCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGACACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCATGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGCTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATACGTCTCTCAGGGATCTTATTTTCAATGATTGTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347220" ref_strand="+" ref_description="SGN-E347220 [cTOF-25-F5]">
      <seq>tctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggtaggacatgtgtggcttcttgttcaattttatacaagattatatgtgcactcccaaagttggacggcgtagttgttcgctaaagccaagcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaagattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattggttggttgcccataatcccccttcatccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13661" stop="16878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13961" g_stop="14019" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15095" i_length="1076">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15096" g_stop="15184" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="148" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15379" i_length="195">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="314" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16369" g_stop="16578" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="526" r_length="212" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E347220" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13961" e_stop="14019"/>
          <exon e_start="15096" e_stop="15184"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATT-GTTGGTTGCCCATAAT-CCCCTTCATCCTTATC</genome_strand>
        <mrna_strand>TCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAA...................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAAGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGGTTGGTTGCCCATAATCCCCCTTCATCCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375769" ref_strand="+" ref_description="SGN-E375769 [TUS-15-A18]">
      <seq>gaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactggtggtttttcagcttgttatgactaatgtctctttacttggacatctttgtggtattttgtcttggatttgcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13664" stop="17444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13964" g_stop="14019" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="222" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="526" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="559" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17144" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="652" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E375769" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13964" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTC-TGGATTTGCAT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTTGGATTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E201667" ref_strand="+" ref_description="SGN-E201667 [cLEC-11-D8]">
      <seq>gaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13664" stop="16934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13964" g_stop="14019" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="222" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16634" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="488" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E201667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13964" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATT</genome_strand>
        <mrna_strand>GAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E301841" ref_strand="+" ref_description="SGN-E301841 [cLEW-25-A9]">
      <seq>aaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactggtggtttttcagcttgttatgactaatgtctttttacttggacatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13680" stop="17420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13980" g_stop="14019" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="206" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="510" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="543" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17120" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="611" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E301841" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E301841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13980" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTT</genome_strand>
        <mrna_strand>AAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTTTTTACTTGGACATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329878" ref_strand="+" ref_description="SGN-E329878 [cTOD-3-J12]">
      <seq>aaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcaaggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13680" stop="17371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13980" g_stop="14019" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="206" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="510" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="543" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17071" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="562" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E329878" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13980" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTG</genome_strand>
        <mrna_strand>AAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAAGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E329795" ref_strand="+" ref_description="SGN-E329795 [cTOD-3-K24]">
      <seq>aaaaagctcatcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgattgtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13681" stop="16940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13980" g_stop="14019" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="206" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16640" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="478" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E329795" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13980" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATG</genome_strand>
        <mrna_strand>AAAAAGCTCATCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367270" ref_strand="+" ref_description="SGN-E367270 [cLPT-5-H13]">
      <seq>gagtgctttctggaaatatttgggagaacctttcttcgtggatgccacagagagagagctctctctctgctcagccggtgacagatgatagcaggtttcctgggagaggaagaactctgagttcccagaccaccacgactaatcatgattcaacgttacaggctaggctcctggatggtagcagcagccctgagcgtagttcacctactgctacaataggtggagagcggagcttagctggaaggtgctagaaacagactgttattacatgctaaattgttaatactcatatatctgttttgtatttgactaaatcattggttggtgcactaagatggatccgttttagttatattttcatgtgctgctgaaactgctctccagttgaacggtttgctgtaaaacgaggtgtttaaattggttgatccagtaaccaagtttaagttatatcgctatagaaaggaaaagctggattttcttcaatccgttcacaaaatacaattcctatgattcttttttttctctggataggttcttctggattttctgatttctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="17872" stop="19378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18171" g_stop="18244" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18600" g_stop="19078" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="558" r_length="484" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E367270" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18171" e_stop="18244"/>
          <exon e_start="18600" e_stop="19078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAGGTATGACAGATTATTGAAACTTACTCATCCGATATGTCCCATTGACTGGTTAGAAAGAGTTGAGAGGCTTCCTTTTCTTGTCAGCAGAAATTTCTTTTCTTGTTAAGTAGAGTAGATATGCAATGGCGCTTGATCTATAATGGGTTGTGAACAAGGAGGAATTGATACCATTTTATCTGTGTATTGATGAGTCTCTCATATGTATCAATCAACCCTTCTCTTGAAGAATTTTCAACTGCACAACTGCTTAATAGACTTACCTAGTTCTCTTGTCTGTGTGGCCTAATGTATAAATAAGAACAAAAAACATGGATTATAATGAAGTAGTTAATATATTACTTTGTTCAAATTGCAGCCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACT--ATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGT-AAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGA-T-TTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATC</genome_strand>
        <mrna_strand>GAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACGACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGGTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTATTACATGCTAAATTGTTAATACTCATATATCTGTTTTGTATTTGACTAAATCATTGGTTGGTGCACTAAGATGGATCCGTTTTAGTTATATTTTCATGTGCTGCTGAAACTGCTCTCCAGTTGAACGGTTTGCTGTAAAACGAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTATAGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCACAAAATACAATTCCTATGATTCTTTTTTTTCTCTGGATAGGTTCTTCTGGATTTTCTGATTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E375768" ref_strand="+" ref_description="SGN-E375768 [TUS-15-A18](-)">
      <seq>tcgtggatgccacagagagagagctctctctctgctcagccggtgacagatgatagcaggtttcctgggagaggaagaactctgagttcccagaccaccaccactaatcatgattcaacgttacaggctaggctcctggatggtagcagcagccctgagcgtagttcacctactgctacaatagctggagagcggagcttagctggaagactatcagcagttgatactaccaccacagctacaagaccgctaggacagcaggcttccattccctcagatgaagaagttcagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaattcctcgagccctcgttgttttcctcttctttttggttgtatataatcttacagcaaatttacacaattcttagagagatggaagaccttcttagtgtgtgatttacgcctaatccccataaaacagagatgaattgtatatctaccttcatgattttagatgctgcaatatcaatgaatcattttatattttcttagcctatacccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="17906" stop="20288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18206" g_stop="18244" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18600" g_stop="18769" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="209" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19239" g_stop="19290" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="261" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19369" g_stop="19425" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="393" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19709" g_stop="19989" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="674" r_length="281" r_score="0.996"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19990" i_stop="20071" i_length="82">
            <donor d_prob="0.803" d_score="0.98"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20072" g_stop="20077" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="680" r_length="6" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E375768" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18206" e_stop="18244"/>
          <exon e_start="18600" e_stop="18769"/>
          <exon e_start="19239" e_stop="19290"/>
          <exon e_start="19369" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19989"/>
          <exon e_start="20072" e_stop="20077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAGGTATGACAGATTATTGAAACTTACTCATCCGATATGTCCCATTGACTGGTTAGAAAGAGTTGAGAGGCTTCCTTTTCTTGTCAGCAGAAATTTCTTTTCTTGTTAAGTAGAGTAGATATGCAATGGCGCTTGATCTATAATGGGTTGTGAACAAGGAGGAATTGATACCATTTTATCTGTGTATTGATGAGTCTCTCATATGTATCAATCAACCCTTCTCTTGAAGAATTTTCAACTGCACAACTGCTTAATAGACTTACCTAGTTCTCTTGTCTGTGTGGCCTAATGTATAAATAAGAACAAAAAACATGGATTATAATGAAGTAGTTAATATATTACTTTGTTCAAATTGCAGCCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACTATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGTAAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGATTTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATCTTGATCAAAGTAAAGCCTCCAATTACCATAATTACCTGGCGTTCTTATTGTGGGTCGAGCTTGAATGTTTGATAGCTCAACTTTATTGTTAAAACTAAGAGCTTGGTGTCTGTGATTTGCTCTAAACACAGTTATATTTTGATTCTGTGTGACATCTCAGACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAGGTATATGACCTGAACTTGGACCACTTGCTAAGTGTTTATGTTTATTATCGTTAGTGCTAAAGTTATTTTTGCATATAGGCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTTTCTTAGCCTATACCCAATGTGAGAATGAGTCCTTTTTCTCTTCTTTTAATTACAATCCCGTGCTAGTATAACTCACTGCCTATCAGTTATAATATTATAGACTAAA</genome_strand>
        <mrna_strand>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG..............................................................................GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTTTCTTAGCCTATACCCAAA..................................................................................AAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285486" ref_strand="-" ref_description="SGN-E285486 [cLES-10-J14]">
      <seq>gagcggagcttagctggaagactatcagcagttgatactaccaccacagctacaagaccgctaggacagcaggcttccattccctcagatgaagaagttcagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaattcctcgagccctcgttgttttcctcttctttttggttgtatataatcttacagcaaatttacacaattcttagagagatggaagaccttcttagtgtgtgatttacgcctaatccccataaaacagagatgaattgtatatctaccttcatgattttagatgctgcaatagcaatgactcattttataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="18450" stop="20268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18750" g_stop="18769" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19239" g_stop="19290" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="72" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19369" g_stop="19425" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="129" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="204" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19709" g_stop="19967" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="463" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="464" polyA_stop="475"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E285486" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285486" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18750" e_stop="18769"/>
          <exon e_start="19239" e_stop="19290"/>
          <exon e_start="19369" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACTATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGTAAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGATTTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATCTTGATCAAAGTAAAGCCTCCAATTACCATAATTACCTGGCGTTCTTATTGTGGGTCGAGCTTGAATGTTTGATAGCTCAACTTTATTGTTAAAACTAAGAGCTTGGTGTCTGTGATTTGCTCTAAACACAGTTATATTTTGATTCTGTGTGACATCTCAGACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAGGTATATGACCTGAACTTGGACCACTTGCTAAGTGTTTATGTTTATTATCGTTAGTGCTAAAGTTATTTTTGCATATAGGCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTAT</genome_strand>
        <mrna_strand>GAGCGGAGCTTAGCTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG..............................................................................GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATAGCAATGACTCATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E716478" ref_strand="+" ref_description="SGN-E716478 [FB17AF07]">
      <seq>accaccacagctacaagaccgctaggacagcaggcttccattccctcagatgaagaagttcagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaattcctcgagccctcgttgttttcctcttctttttggttgtatataatcttacagcaaatttacacaattcttagagagatggaagaccttcttagtgtgtgatttacgcctaatccccataaaacagagatgaattgtatatctaccttcatgattttagatgctgcaatatcaatgaatcattttatatttaaaaaaaaaaaaaaaaaaaaaccccgggtttttttttttttttttttttttttttttttcaaaaaaaaaaaattttttttttttttaaaaaggggggggaaatatattttttaaaaacccccttttttttttgcccaaaaaaaccccccccccactatttttacccccccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="18958" stop="62496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19258" g_stop="19290" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19369" g_stop="19425" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="90" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="165" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19709" g_stop="19971" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="428" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19972" i_stop="20071" i_length="100">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="20072" g_stop="20110" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="465" r_length="37" r_score="0.615"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="20111" i_stop="20816" i_length="706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20817" g_stop="20839" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="488" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20840" i_stop="21063" i_length="224">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21064" g_stop="21074" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="499" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21075" i_stop="21442" i_length="368">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21443" g_stop="21549" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="600" r_length="101" r_score="0.561"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E716478" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19258" e_stop="19290"/>
          <exon e_start="19369" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19971"/>
          <exon e_start="20072" e_stop="20110"/>
          <exon e_start="20817" e_stop="20839"/>
          <exon e_start="21064" e_stop="21074"/>
          <exon e_start="21443" e_stop="21549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCACAGCTACAAGACCGCTAGGACAGCAGGTATATGACCTGAACTTGGACCACTTGCTAAGTGTTTATGTTTATTATCGTTAGTGCTAAAGTTATTTTTGCATATAGGCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTTTCTTAGCCTATACCCAATGTGAGAATGAGTCCTTTTTCTCTTCTTTTAATTACAATCCCGTGCTAGTATAACTCACTGCCTATCAGTTATAATATTATAGACTAAAAACACTGCTAAATGAGCCCTCGGGGTTTTGGTTCCACGCGGCAAAAGATAGAACAACGCCCGTGGTGTATGATTGATCCTACATGACTGTGAATCTTGATAGTGAACCAAGTTTGATCATAGTTTCCATTTATGGATTATACCGAGTATGTTATTGTTATAAGATTAGATAGATCGTACATTGTAAGTTTGAATCTTGATAGTGAACCAACCACACACCAGTGCTGGTGAATCCTCTTCCTAAATCCTAACTATTTATAAACATATACAACACCATACTAGTGTATCTCGTTAGTGGCATACGGAGAGGATGGTGTTTATCCGTCTTCCCTTTACTATAGAAAGATATAAAGAAGTTGTTTCTGATAGATACGAGTAAAATGTTGAAATTAAATGTCCCTTCCCACATCGTTTTAGTGAACAATTTTAATGCTCTTAATATGTAACTCTCAGGCACAAACAGAGCAATCCGATCACATGTTGACGTGAATGGGCTATAACCCGTCCTATTGGATGGGCCAGGCCCAGGAAAGTCCCCGGGCCCATAACCGCAGAGATGCGGGCTCAGAAATGAGTTATGCTTCATGGGCTGGAATCCAAAACTCATAAATGGGTTTGGGCTGAGACGAGGTGGAGCCTATGATTCCGGCCCAGAAGCCCAATTGGCTAATAAAACAGTTATTCACGTGGTCTAGTTAAAAACCTAGATTAACTGAACGGGGCTTACAGTCATGTGGTCATTCTTTTTGTTTTTTTATTTAGCATTTGAATTTATTGACAATTATTTCGACAGACTAGAGAGATTTTAAACATCGAATAGGGGCCATTTACTTCATTATTTTGTTTTATGATTTTGTAGATACAACATGTAAAGTTTAGTGATAATATATGTATCTCATAAAATTGATCTTTCACTTTTTCCGGAGAAGAAGCAATGATGGTATCTGGGAAATAAGCATCGGCTAACTCTGTGCTAGCACTCGCGGTAAAAAGAAAAAGCAAGTCTGTGCATACCATACTCTCTCTGTTCTTCTCCTAATGGGCCAACTCGAAATGGATCAATTCGAGAAAAGGGTTGCACAAGGACACTTATCACGAGAAGCAGAGTTTGATAGTGAAATTCAAGATTAAGAGTACTGCAAAACATCAACTTTGGTTGATTATGAAATTCAATGTCAAAGAGATGACTTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGTCTTAATGAAATGAAATTCGGGATCCAAGTAGATTAGGGGTTGCTGAGTATTAAAAACTTATTACTCGGAATCCTATTTTTTTAGAACGAGTTTGAAGGCGTAGGCATTGTAGAAATCTTCCAACTGCCCCTTCTTTGTCATTGAGTTTTTTTTTAGGAGATTGACAAGTTAATATATATATATATATATTGATTTTTTTAATAAATCCACAGAAAAAACAACGAAATTCATTTATACCCACGAACA</genome_strand>
        <mrna_strand>ACCACCACAGCTACAAGACCGCTAGGACAGCAG..............................................................................GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTT....................................................................................................A-AAAAAAAAAAAAAAAAAAAACCC-CGGGTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTC................................................................................................................................................................................................................................AAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTA--AAAAGGGGGGGGAAATATAT-TTTTTAAAAACCCCCTTTTTT-TTTTGCCCAAAAAAACCCCCCCCCCACT-ATTTTTACCC-CCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221930" ref_strand="+" ref_description="SGN-E221930 [cLEL-10-F21](-)">
      <seq>cagaaacatgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaagggaacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaagatggtaatctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="19096" stop="20081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19396" g_stop="19425" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="105" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="0.98"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="19781" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="178" r_length="73" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E221930" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19396" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATT</genome_strand>
        <mrna_strand>CAGAAACATGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGAACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAGATGGTAATCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E220456" ref_strand="+" ref_description="SGN-E220456 [cLEL-12-E7](-)">
      <seq>cagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="19096" stop="20081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19396" g_stop="19425" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="105" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="19781" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="178" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E220456" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19396" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATT</genome_strand>
        <mrna_strand>CAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E221525" ref_strand="+" ref_description="SGN-E221525 [cLEL-10-F21](-)">
      <seq>cagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="19096" stop="20081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19396" g_stop="19425" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="105" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19709" g_stop="19781" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="178" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E221525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>178</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19396" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATT</genome_strand>
        <mrna_strand>CAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E398474" ref_strand="+" ref_description="SGN-E398474 [TUS-16-F10](-)">
      <seq>atgcagataatacatctaagaggccatatattaatcagaaccgtcacacattcgaaaagccagtcaagatatacaactgaaagaggcttgtgatatttcagctgggttttggttgtagcgttcactcctcacgagcttagaagggagaaatgtaaaagagtttgtagctatgacatgatgataagtagaaggcagagaggggattggcatgaaaaccgttttcatttaggggatttcaccacctttgtctcctcctgatgatttggtcagattttgcaggctttatgttttcccttcgatttcgtttggggagggagatttgtttctctttagtttagttaggatgtgcgctgcagtttctgccctcgccttcagctattacaccgctgagggttggttcttttgatgttgtcttctgcatagtttattctgcatataagattttggttgaagggaatgtatagctgatatagtcgtcgggtgccttctgggcatgtaccatctatctgttacttctgtatgaatttccccattcctctttttgttgtatttaatgtcataggagtggggaatggatctgtataagttttctctatagcattggtatatgttttctatgcttcattttctgtctttgttgttgttactgttggtttagtttggcaggaaatgacaaaaacctccttcaattgagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="23415" stop="21577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23115" g_stop="23078" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23077" i_stop="22540" i_length="538">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22539" g_stop="21871" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="708" r_length="670" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E398474" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23115" e_stop="23078"/>
          <exon e_start="22539" e_stop="21871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCAGATAATACATCTAAGAGGCCATATATTAATCAGGTAGACTCTTAGATCTTACTAGAACCCTTTTAGTTATTAGTTAAAACATACCAGTGGTTCTATTGTAGTATCTTAATTTGCCTCCTCCTAAAAGCTGTTAATTTATGATATTTTATCTAGTGGAACCTGCTTTTTAATGTTTGAGGAGCTTTCAGGGGTCAAGTTAAGATTTACTTTGTCTTAACTATAGTTCCAGTGACTAGACTATGAACTAGATCTTACTATGTCACAAGGCATTCGGTTAGTAGATTGTTAATTAAAAATAAAAAATAATTTCTCTAATAGTTGCGCATATGGTTTAATTTCTATGGACCTTCTCTTTTGGGTGTGTGTGATCAGATATTGAGATGTAATCTATGTTTCCATTTCGCTCGACGACAATCACTGACTAGTCACATATTTTGATAGTTGCAGAATTATTTAACATCGTTTCTCCGCTGGACCCCCTACACTTTGAGCTGCTTATTACTTGATAATCTTGGTCATTATATGTTGAAAAAACCTCTACTGTGCTTTAATAATTACTCTGATATTGCAGAACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCA-TTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGCATATGAATGATTT</genome_strand>
        <mrna_strand>ATGCAGATAATACATCTAAGAGGCCATATATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCATTTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGCAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395586" ref_strand="+" ref_description="SGN-E395586 [TUS-16-F10]">
      <seq>atcaaatcaaaggtagagttgtcccatccaaatgcagagctcagattactcgaggtcttctatcacaagatttataagatctttccgctcagtgaaaagattgagaatataaatgaccaatattggacattgcgggcagaggaaataccagaagaggagaaaaaccttggtccccacgatcgtctaattcatgtttaccatttcacaaaagagactccacaaaatcaaatgcaagtgcagaattttggagaacctttctttctggtcatccatgaaggtgaaactttagcggaaattaaagtgcggattcaaaagaaattgcaggtctcggatgaggagttctctaagtggaaatttgcatttttatcattggggcgcccagaataccttcaggactcagatattgtatccaaccgttttcagaggagagatgtttatggtgcttgggagcagtaccttggattggagcatgcagataatacatctaagaggccatatattaatcagaaccgtcacacattcgaaaagccagtcaagatatacaactgaaagaggcttgtgatatttcagctgggttttggttgtagcgttcactcctcacgagcttagaagggagaaatgtaaaagagtttgtagctatgacatgatgataagtagaaggcagagaggggattggcatgaaaaccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="24791" stop="22059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24485" g_stop="24420" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="78" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24161" g_stop="24096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="144" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23779" g_stop="23693" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="231" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23608" g_stop="23492" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="348" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.311" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23365" g_stop="23291" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23290" i_stop="23162" i_length="129">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23161" g_stop="23078" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="507" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23077" i_stop="22540" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="22539" g_stop="22359" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="688" r_length="181" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E395586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24485" e_stop="24420"/>
          <exon e_start="24161" e_stop="24096"/>
          <exon e_start="23779" e_stop="23693"/>
          <exon e_start="23608" e_stop="23492"/>
          <exon e_start="23365" e_stop="23291"/>
          <exon e_start="23161" e_stop="23078"/>
          <exon e_start="22539" e_stop="22359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAGGTGAGGAGTCCTAATATAAGTTTACTACTTTGTCCTTTACTTGAATCTATAAATATGGCTTCTAGCACAGGCTTTGTGCTCTTGACTAATACAATAGTTACCTTTCTCTAAAAATACTTTTCTTCTTTATTAGATTTGTGCTGACATTTTAGTTTGATTGCTAGATGACCTTTCAAGACTTCTTCTGTTAGCTTAGGTGTTCTTTTTGTCTGTCTGTATCTGATCCACCACCCTTTCATTACCATTTCTAATCTGCAGATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAAGTAAGTTTTCTAGGTGTTATATGGCTGATTTCTTCTTCTTCTTCTTCTTCTTTACTTTTCTAAAAATATGTTGCTGAGGTTTTGAAGTTTAAGCAGAGATTTGGATACATATCCCCTTCCTTCCCCACCCTCTTTTAAAAAGGAGAATCTAGGGTCTGAGCTTTAATTTGATTGCTATGCTTTATAGGTGTCTTCTGTTCCACTGACCCCTCTGCTTTAGATTGTTGATTAAAAATTAATAATGATATTCTGTGGTATATGTTGTTCCACCGACCTATTTGTAATACTCTGTCTGTTTTATTTTAATTTTTTGTAGATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATGGTAATACAAATAGTCTTGATTAATTGTTACTGATGTACTGCTGCATCTGACTTCAAAATTAGTAATTGGATTGGTCTTCAACAGCAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAGGTACAGTGCTTTAGCACAAGCCTAAGCAGCAACTGGAATATTCTTGCATACTTTTAGCATTGTGGTTTATTTTTTAAAGGCCTATGATTGACGGACGGGTTGACTCTGTAATTTTTTGATGGCTAGTGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAGGTTAGTGTATCCCCGCCTCCCCCCCTGAAGGTCCACGTGAAACTCCTTTTATGTTTGTATGTCAGCTATAGCTGCGCCTTCTTTTTTCTAAATTCTGCCCAAGCTGAAGATGCTTGTATCCTGTTGCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAGGTAGACTCTTAGATCTTACTAGAACCCTTTTAGTTATTAGTTAAAACATACCAGTGGTTCTATTGTAGTATCTTAATTTGCCTCCTCCTAAAAGCTGTTAATTTATGATATTTTATCTAGTGGAACCTGCTTTTTAATGTTTGAGGAGCTTTCAGGGGTCAAGTTAAGATTTACTTTGTCTTAACTATAGTTCCAGTGACTAGACTATGAACTAGATCTTACTATGTCACAAGGCATTCGGTTAGTAGATTGTTAATTAAAAATAAAAAATAATTTCTCTAATAGTTGCGCATATGGTTTAATTTCTATGGACCTTCTCTTTTGGGTGTGTGTGATCAGATATTGAGATGTAATCTATGTTTCCATTTCGCTCGACGACAATCACTGACTAGTCACATATTTTGATAGTTGCAGAATTATTTAACATCGTTTCTCCGCTGGACCCCCTACACTTTGAGCTGCTTATTACTTGATAATCTTGGTCATTATATGTTGAAAAAACCTCTACTGTGCTTTAATAATTACTCTGATATTGCAGAACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGT</genome_strand>
        <mrna_strand>GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAG..................................................................................................................................................................................................................................................................ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA............................................................................................................................................................................................................................................................................................................................ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG....................................................................................CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG..............................................................................................................................TGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAG.................................................................................................................................AGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205882" ref_strand="+" ref_description="SGN-E205882 [cLEC-20-B6]">
      <seq>tcaaatcaaaggtagagttgtcccatccaaatgcagagctgggattactcggggtcttctatcacaagatttataagatctttccgctcagtgaaaagattgagaatataaatgaccaatattggacattgcgggcagaggaaataccagaagaggagaaaaaccttggtccccacgatcgtctaattcatgtttaccatttcacaaaagagactccacaaaatcaaatgcaagtgcagaattttggagaacctttctttctggtcatccatgaaggtgaaactttagcggaaattaaagtgcggattcaaaagaaattgcaggtctcggatgaggagttctctaagtggaaatttgcatttttatcattggggcgcccagaataccttcaggactcagatattgtatccaaccgttttcagaggagagatgtttatggtgcttgggagcagtaccttggattggagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="24791" stop="22813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24485" g_stop="24420" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="77" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24161" g_stop="24096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="143" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="23779" g_stop="23693" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="230" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23608" g_stop="23492" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="347" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.311" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23365" g_stop="23291" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="422" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="23290" i_stop="23162" i_length="129">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23161" g_stop="23113" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="471" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E205882" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24485" e_stop="24420"/>
          <exon e_start="24161" e_stop="24096"/>
          <exon e_start="23779" e_stop="23693"/>
          <exon e_start="23608" e_stop="23492"/>
          <exon e_start="23365" e_stop="23291"/>
          <exon e_start="23161" e_stop="23113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAGGTGAGGAGTCCTAATATAAGTTTACTACTTTGTCCTTTACTTGAATCTATAAATATGGCTTCTAGCACAGGCTTTGTGCTCTTGACTAATACAATAGTTACCTTTCTCTAAAAATACTTTTCTTCTTTATTAGATTTGTGCTGACATTTTAGTTTGATTGCTAGATGACCTTTCAAGACTTCTTCTGTTAGCTTAGGTGTTCTTTTTGTCTGTCTGTATCTGATCCACCACCCTTTCATTACCATTTCTAATCTGCAGATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAAGTAAGTTTTCTAGGTGTTATATGGCTGATTTCTTCTTCTTCTTCTTCTTCTTTACTTTTCTAAAAATATGTTGCTGAGGTTTTGAAGTTTAAGCAGAGATTTGGATACATATCCCCTTCCTTCCCCACCCTCTTTTAAAAAGGAGAATCTAGGGTCTGAGCTTTAATTTGATTGCTATGCTTTATAGGTGTCTTCTGTTCCACTGACCCCTCTGCTTTAGATTGTTGATTAAAAATTAATAATGATATTCTGTGGTATATGTTGTTCCACCGACCTATTTGTAATACTCTGTCTGTTTTATTTTAATTTTTTGTAGATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATGGTAATACAAATAGTCTTGATTAATTGTTACTGATGTACTGCTGCATCTGACTTCAAAATTAGTAATTGGATTGGTCTTCAACAGCAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAGGTACAGTGCTTTAGCACAAGCCTAAGCAGCAACTGGAATATTCTTGCATACTTTTAGCATTGTGGTTTATTTTTTAAAGGCCTATGATTGACGGACGGGTTGACTCTGTAATTTTTTGATGGCTAGTGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAGGTTAGTGTATCCCCGCCTCCCCCCCTGAAGGTCCACGTGAAACTCCTTTTATGTTTGTATGTCAGCTATAGCTGCGCCTTCTTTTTTCTAAATTCTGCCCAAGCTGAAGATGCTTGTATCCTGTTGCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATG</genome_strand>
        <mrna_strand>GTAGAGTTGTCCCATCCAAATGCAGAGCTGGGATTACTCGGGGTCTTCTATCACAAGATTTATAAG..................................................................................................................................................................................................................................................................ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA............................................................................................................................................................................................................................................................................................................................ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG....................................................................................CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG..............................................................................................................................TGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAG.................................................................................................................................AGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316828" ref_strand="+" ref_description="SGN-E316828 [cTOA-27-A15]">
      <seq>gaagtagtggatagagtggctcagaggcttggtgtggatgattcctccaaaattaggcttactcctcacaactgctactcacagcaacccaagcccaaccccatcaaatatcggtctgtggatcatttggtagacatgcttatccattacaatcagatctccgatattctgtattatgaagttctggacatacctctgccagaattacaatgtctgaagacgctcaaagttgccttccatcattctacgaaggatgagattgaaattctgaatgtaagattgcctaagcagagtacagtgggggatgtacttgaggaaatcaaatcaaaggtagagttgtcccatccaaatgcagagctcagattactcgaggtcttctatcacaagatttataagatctttccgctcagtgaaaagattgagaatataaatgaccaatattggacattgcgggcagaggaaataccagaagaggagaaaaaccttggtccccacgatcgtctaattcatgtttaccatttcacaaaagagactccacaaaatcaaatgcaagtgcagaattttggagaacctttctttctggtcatccatgaaggtgaaactttagcggaaattaaagtgcggattcaaaagaaattgcaggtctcggatgaggagttctctaagtggaaatttgcatttttatcattggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="26196" stop="23040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25896" g_stop="25741" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25740" i_stop="25618" i_length="123">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25617" g_stop="25516" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="258" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25515" i_stop="25434" i_length="82">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25433" g_stop="25362" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="330" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25361" i_stop="24486" i_length="876">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24485" g_stop="24420" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="396" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24161" g_stop="24096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="462" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23779" g_stop="23693" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="549" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23608" g_stop="23492" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="666" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.311" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="23365" g_stop="23340" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="692" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E316828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25896" e_stop="25741"/>
          <exon e_start="25617" e_stop="25516"/>
          <exon e_start="25433" e_stop="25362"/>
          <exon e_start="24485" e_stop="24420"/>
          <exon e_start="24161" e_stop="24096"/>
          <exon e_start="23779" e_stop="23693"/>
          <exon e_start="23608" e_stop="23492"/>
          <exon e_start="23365" e_stop="23340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAGGTTTGTTAACATGAGTTGACTTCATCTTGGAAGCACATGGTGACTTTTAATGCTTGCTCATCATAACAATGGCATATTACAACCATGTCTCAACTTTTTTCTTTATTTTTTTGGTGGTGATAGATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAGGTTTCTCTAAATTTGGCAAAAAACATTTTTATCCCATCAAACTATTACCCTTCCTCATTACATTTGTTTTCATTGCTTTCAGATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAGGTATGGATACATGTTTATAAACTATAATTGTGGTACTGAGTCTCTGAAAAGGATGCAAGCAATTTCCACACCTTTCAGTAAAAAATAAGCAGTTTACTCGTGGTAGATTTCTGATCTCTTGATAGTTATATGTTTTTAGTTGATTTATGCACCATTACTGTTAATGTTGTTTGATGGATTCAGGTTCTGTGGATAGCATATAGGGAAAGGGTACAATCTAGTGTAACTTGTATTATTTACCCTAATAATTGAAGAGTTGGTATTTACATTTGCTGCCTACACTACGCCAGCGTGTGCTTTTCTGCTACTTTGGATAATATTTTTTTTTTAATATTGACTAGTTATAACTAAGATTCCGTTTCCAGTATCTTAGTCAATTACTATGCATATAAGATCTCTGTGATGATTGTCCTAAATAAGACTTCTCAAGTGTCACATTGAGGCGTCTTTTGAAAATATAATTTAGAGATTTGGAAATGACATGAGAAGTACAAGTTAGCCAAACATGCTTGATTTAGTTGATTATACAAAAATCACTTGTTGACATTAGGAGTTGGCAATCTTTTCGTGATATTTTTTGACTTTGATAATGGCAATCTTCCTTCCTTTTTTGAGCAAGGGGAGTACTCTCTTTCCTATGAGATTATCTTGTATAAAACCATTAATAAAGGATGACAAATGTGCACCCTAATGTACGTCTCTTGTTGGTGTATATATTATGAAGAAACCATTTTACATGCATTTTTCAAGGACATGTAAGATTTAGACTGTCATGTACATTCTGGACCAATGTTATGTCTCTAATGTTTTCTGTTCAATGGTGGCTTCCATTTATGTATGAGAATATAACTTCTGGCATATGGTGTGCTGCAATAGGTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAGGTGAGGAGTCCTAATATAAGTTTACTACTTTGTCCTTTACTTGAATCTATAAATATGGCTTCTAGCACAGGCTTTGTGCTCTTGACTAATACAATAGTTACCTTTCTCTAAAAATACTTTTCTTCTTTATTAGATTTGTGCTGACATTTTAGTTTGATTGCTAGATGACCTTTCAAGACTTCTTCTGTTAGCTTAGGTGTTCTTTTTGTCTGTCTGTATCTGATCCACCACCCTTTCATTACCATTTCTAATCTGCAGATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAAGTAAGTTTTCTAGGTGTTATATGGCTGATTTCTTCTTCTTCTTCTTCTTCTTTACTTTTCTAAAAATATGTTGCTGAGGTTTTGAAGTTTAAGCAGAGATTTGGATACATATCCCCTTCCTTCCCCACCCTCTTTTAAAAAGGAGAATCTAGGGTCTGAGCTTTAATTTGATTGCTATGCTTTATAGGTGTCTTCTGTTCCACTGACCCCTCTGCTTTAGATTGTTGATTAAAAATTAATAATGATATTCTGTGGTATATGTTGTTCCACCGACCTATTTGTAATACTCTGTCTGTTTTATTTTAATTTTTTGTAGATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATGGTAATACAAATAGTCTTGATTAATTGTTACTGATGTACTGCTGCATCTGACTTCAAAATTAGTAATTGGATTGGTCTTCAACAGCAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAGGTACAGTGCTTTAGCACAAGCCTAAGCAGCAACTGGAATATTCTTGCATACTTTTAGCATTGTGGTTTATTTTTTAAAGGCCTATGATTGACGGACGGGTTGACTCTGTAATTTTTTGATGGCTAGTGGAAATTTGCATTTTTATCATTGGG</genome_strand>
        <mrna_strand>GAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAG...........................................................................................................................ATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAG..................................................................................ATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAG..................................................................................................................................................................................................................................................................ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA............................................................................................................................................................................................................................................................................................................................ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG....................................................................................CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG..............................................................................................................................TGGAAATTTGCATTTTTATCATTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556016" ref_strand="+" ref_description="SGN-E556016 [cTSD-2-C17]">
      <seq>attgactggatttgctcctgaccaaaaaaattaaactttttgaggaaataaagtttgaaaccttctgtcatgtgtgcgggagggggcccaaaggcttcttttccatttaggcggattgaaaataggggatatgatatgctttcaaaaaaaaacttctcctgaagttgaagaacaagtccgatttccagatgttccttcatatatggagtatgtcaaaaatcgccagcttgtccacttcagagcactggaaaaaccgaaggaggatgatttttgtctggagttagcaaaaagtgatacatatgatgaagtagtggatagagtggctcagaggcttggtgtggatgattcctccaaaattaggcttactcctcacaactgctactcacagcaacccaagcccaaccccatcaaatatcggtctgtggatcatttggtagacatgcttatccattacaatcagatctccgatattctgtattatgaagttctggacatacctctgccagaattacaatgtctgaagacgctcaaagttgccttccatcattctacgaaggatgagattgaaattctgaatgtaagattgcctaagcagagtacagtgggggatgtacttgaggaaatcaaatcaaaggtagagttgtcccatccaaatgcagagctcagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="29151" stop="24151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28851" g_stop="28809" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28808" i_stop="28710" i_length="99">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="114" r_length="70" r_score="0.783"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28640" i_stop="28552" i_length="89">
            <donor d_prob="0.952" d_score="0.74"/>
            <acceptor a_prob="0.864" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28551" g_stop="28441" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="226" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28440" i_stop="26067" i_length="2374">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26066" g_stop="26011" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="282" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26010" i_stop="25919" i_length="92">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25918" g_stop="25741" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="460" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25740" i_stop="25618" i_length="123">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25617" g_stop="25516" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="562" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25515" i_stop="25434" i_length="82">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25433" g_stop="25362" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="634" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25361" i_stop="24486" i_length="876">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24485" g_stop="24451" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="669" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E556016" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E556016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28851" e_stop="28809"/>
          <exon e_start="28709" e_stop="28641"/>
          <exon e_start="28551" e_stop="28441"/>
          <exon e_start="26066" e_stop="26011"/>
          <exon e_start="25918" e_stop="25741"/>
          <exon e_start="25617" e_stop="25516"/>
          <exon e_start="25433" e_stop="25362"/>
          <exon e_start="24485" e_stop="24451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCTGGATTTGCTCCTGACC-AAGAAATTGAACTTTTTGAGGTGTGCTTTTGTCTCCTTCTCTCTGTTGTTGATGCACTTATCGTTCTATTGATGTCATTGATTGATATAACATGAGAATTTGGTCTTTTTTCTTTACAGGAAATAAAGTTTG-AACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAGGTTTTTGTCCTTTCTGTTTTCCCTGCTCGATTGCTGAAAGCTTTTCTCTTCTCAGATTTGGATTTGCTTTGCTGACTTAGTTCTTACAGATTGAAGAT-GGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAGGTGAATCTCCATGAGTTCCAGTTTCTGTAAGGCTGTTGATGCCCCTATATGTAGTATAAATATTTTCTACTCTATTTTTTTTTGAGAAGGTTAACTGGTATTATAAACAAAAGGAGTACATGAATTGTGTGCTCCTACAAATTACATCAAAAGTATGAAGGTTTAACCCAAAACAAAATCTATCACCTATATCCCTTATAAACTGTCGAAAAATAAGGTAATGTCCCCTATATCCTTAGGTACAGAGTGGAGACACCATTCTGCTCCTCTATTTTTCGGGTTTATGGTCCTCTAGTTTTGGTACCGTGCGTTGCACGTTTGGCCCTACTACTATTTAAAATTTATGTAGACCTAACTCTTGTTGATAATAAGGTAGTACCTTTATTTTACTGTGTCCTTCGTCCCTTGAATCTTTGTAACTCAAAACATCTGTCAAGAATAAACTATTAAATAGCTTTAGAAAAACTCCATTTATAAGTGGAAAGTGTCATTACACGGAACGGATAACTTGTTACATGATTATCATTGAATTCGAATCATACATTGACTTGGAGGGAGTATAGTATTTATAGCCAACAAAAACTAAATTTAAAATTGACATACAAATCTAAAAAACTCACTCTTGCAACTTCAAGTATCATCAAATTTTAGTATGTATTTAAAGGGTAAATATGTATTTATTATAAGTGATCTTTACGTTTTTCTATGTGAAATTTTATGGAGCTATCTAAGCATCAACAAACCTTTAGTCGATCCAATTTTGTCTATCTAGCATTCTAACTACGTTATTGTGTTTTAAAGAGCTAATTACTATTTTGTAATTACTCAAAAGCATTATAATCTTTCAATGATTTAATATAAGTTAAAAAGAGTAAAATGGACGTTCAACTTTTGATTGACATTTTGGTAATTCAATTTTTTTAGCATTAAATGTTCTTACTATGAATATTACAAATATGATTAGAAAAACAAGTGGTTTTCCTTCTGGGTCGAGCTAGTCACACCGGGCTTGCCTAGTGCGGGTTACCTCTCATGTATGGTTTGCCAGCTATTCCATAGGAGCGGGGTTTTTACTCGGGTGGCGGTTGTGTGTTTCCTTAGCATAAAAAAAAGAATAGTATAGATATGAAAATATAGACTTAAACAAAGAGGATGTTGTCTAAAGTAAGAGCATTTATAGAGGTTGTACCATTTTTATTGCTAAAAAAATCATTTTTTTTTCAATTTTCAAATGTGGAAGATTTTTAAAGAAATTACTCTAAAATCTTCAAACAACATGCTAAATTAGCTACTTTATTGGACAATACAATAAATATCTGTATCCAACATTACATGTTCTATTAATTTATAATTTATTAGAATACATAACCTTAGAAAGTTATAAAAGTGAATTTGTACAAATTGAAATAAAGAATGAAAGCTAAAGAGAACATTTTAATAGAAGTCAATTAATGTAAAAAACAATAAAATACACAATGAGTTGCACCGGGCTTGCCTAGTGTGGGTCCTCACCTGTGTGGTTTGCGAGCTATTGCATAGAGTGAGGTTTTTACTCTATGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCTTTGTCATAATAAAAGTCACAACCCTTTGAAAAAGTCACCGTCCGTTGAAAAAGGCTAACTCTATGTAAAAATCACAACCCTTCTAATAAGTCATCGTTCATGTAAAACATAAATAAAAATATAGAACATAGAAGATTTACTAAATTGGATTACTAGCCATTTATGGTTTATAGAAAGTTTACTATCTATAGGTTTCAAGATAGATAGTATTAAATTTACGACTACAAATGACGCTCAAGTTTTATGAAAGTATAGAAATAGTTAAAAAATCAGAGAAAACCACTGTATTTATAGCCAACAAGGGGTGGTATGGTCAGGTGAGTATTGGGGCTTTTCGTAAAAGTCACAATCCTTCGGCAAAGTCACAACCCCTTTTGTAAAGATATGACACCCCGGCCTAACTCAACCCCAAAAGCTAGTTATGAGGGGAAGTTTGTCCATGTTCATATAATGAGATGAATTTCCTATCCCTCTACCGATGTGGAACTTCTTAACACCTTTAATGTGGAAAGTTGCCTCCTTTAGAAGATATACTAAAATGAGTGTTTTTAATTGGGAGTATTATAGTTATTTAACATTCAAGTTAGGAAGTTCATGTTTTAAAGGTTGTATAGATAGATTGGTAGATATAGATATTAGATAGATAGATAGATGATGATATGATGTATGATATGATATATTATGATGATATGACAATGATATGATATATGATGTATGATATGATATATGATGATATGATCTTCTCCCATTTTTCATTTCTCATATCTGAGTTTATTATTTCCAGCTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTTGTGAGTTTATTTGGTACCTCTATCCTACACTTCAGTGCAGAGCAAATGCTTCTGATACATCTGTGACCATCTTTTTGTTGTTAATACTACAGAGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAGGTTTGTTAACATGAGTTGACTTCATCTTGGAAGCACATGGTGACTTTTAATGCTTGCTCATCATAACAATGGCATATTACAACCATGTCTCAACTTTTTTCTTTATTTTTTTGGTGGTGATAGATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAGGTTTCTCTAAATTTGGCAAAAAACATTTTTATCCCATCAAACTATTACCCTTCCTCATTACATTTGTTTTCATTGCTTTCAGATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAGGTATGGATACATGTTTATAAACTATAATTGTGGTACTGAGTCTCTGAAAAGGATGCAAGCAATTTCCACACCTTTCAGTAAAAAATAAGCAGTTTACTCGTGGTAGATTTCTGATCTCTTGATAGTTATATGTTTTTAGTTGATTTATGCACCATTACTGTTAATGTTGTTTGATGGATTCAGGTTCTGTGGATAGCATATAGGGAAAGGGTACAATCTAGTGTAACTTGTATTATTTACCCTAATAATTGAAGAGTTGGTATTTACATTTGCTGCCTACACTACGCCAGCGTGTGCTTTTCTGCTACTTTGGATAATATTTTTTTTTTAATATTGACTAGTTATAACTAAGATTCCGTTTCCAGTATCTTAGTCAATTACTATGCATATAAGATCTCTGTGATGATTGTCCTAAATAAGACTTCTCAAGTGTCACATTGAGGCGTCTTTTGAAAATATAATTTAGAGATTTGGAAATGACATGAGAAGTACAAGTTAGCCAAACATGCTTGATTTAGTTGATTATACAAAAATCACTTGTTGACATTAGGAGTTGGCAATCTTTTCGTGATATTTTTTGACTTTGATAATGGCAATCTTCCTTCCTTTTTTGAGCAAGGGGAGTACTCTCTTTCCTATGAGATTATCTTGTATAAAACCATTAATAAAGGATGACAAATGTGCACCCTAATGTACGTCTCTTGTTGGTGTATATATTATGAAGAAACCATTTTACATGCATTTTTCAAGGACATGTAAGATTTAGACTGTCATGTACATTCTGGACCAATGTTATGTCTCTAATGTTTTCTGTTCAATGGTGGCTTCCATTTATGTATGAGAATATAACTTCTGGCATATGGTGTGCTGCAATAGGTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATT</genome_strand>
        <mrna_strand>ATTGACTGGATTTGCTCCTGACCAAAAAAATTAAACTTTTTGAG...................................................................................................GAAATAAAGTTTGAAACCTTCTGTCATGTGTGCGGGAGGGGGCCCAAAGGCTTCTTTTCCATTTAGGCGG.........................................................................................ATTGAAAATAGGGGATATGATATGCTTTCAAAAAAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTT............................................................................................AGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAG...........................................................................................................................ATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAG..................................................................................ATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366087" ref_strand="+" ref_description="SGN-E366087 [cLPT-15-J6]">
      <seq>ttgtctcctgatgcagataggagtgtacggaatctctatacacttcatagtgtgttggttcatagcggcggtgtgcatggtggacattattatgctttcatcaggccaacactgtcagatcaatggtataagtttgatgatgaacgggtgacaaaagaagacaataagagggctctagaggaacaatatggtggagaagaggagttgccacagacaaatcccggtttcaataacactcccttcaagtttactaaatactccaatgcttacatgcttgtttatatacgtgagagtgacaaggataaaataatctgtgatgttggtgagaaggacattgcggaacacttaaggataaggttgaagaaagaacaagaagaaaaggaggacaagagacgatacacagcacaggcccacctgtatacaatcatcaaggttgcacgggatgaggatcttagagaacagattggtaaggagatatattttgatcttggtgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="39042" stop="36142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38742" g_stop="38693" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38692" i_stop="37286" i_length="1407">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37285" g_stop="37211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="125" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37210" i_stop="37035" i_length="176">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37034" g_stop="36956" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="204" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36955" i_stop="36893" i_length="63">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36892" g_stop="36746" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="351" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36745" i_stop="36664" i_length="82">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36663" g_stop="36583" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36582" i_stop="36510" i_length="73">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36509" g_stop="36442" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="500" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E366087" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38742" e_stop="38693"/>
          <exon e_start="37285" e_stop="37211"/>
          <exon e_start="37034" e_stop="36956"/>
          <exon e_start="36892" e_stop="36746"/>
          <exon e_start="36663" e_stop="36583"/>
          <exon e_start="36509" e_stop="36442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAGGTAAATTTAGCTCTCTTCTCGATGTGTATGTGCAGATAAACACACTGGCATGCAGTCCCAATTATTGTCTTTCTTTGAACTTCATTGTCTATTCAGCATAGTATGAAGTGTCTGTCTTTTTCGCTGATAAGCAAAGTTATTATATTCACATTAAATCAAAAGCTAAGTTGGTGCTATGTAAGCTTTTCAATTACATCTCTTAGACGCACAGGATGAGTCATTGCATCTTCCTGATTAGTCTGCATCCTTCAAAAATTTAAGCGAAAATAGAACATGTTTTGTGAAACATCTATGCTTCAAGCTATACACTGTTCTTACCTCCCTCTCTCTCTCTCTCTCCTCTTTTTTTTTTAAGTTATAAATATCTGAGAGATCTCCAAGGATCAGTGGTGTATGATTCGAAATTTGGTGCATAATGCGCCCACCCTCTTACCTTCTCCATTAGTACCTGACTTTTGTCTGCAGCAGGATTCAGACCAACGATTTGCGCCTAACCCACAAATAATGCGGTGGGCTCTTGGCTCTAGACAAAGCCTTTGGTGTGTGTGTGTGTCAAAATATCAACTATTTTTTTCTGTTTATATATGCCACATAATGCATAAGTGAGCAGTAAGCTGTATCCGCAACTTCTTCTTTGCGGATTATTCACTTCTCATGCTTGAAGCATTTATTACTTACCTAAATCAGATAATCCATTACTTGACATAAGCATGATTTAGAGAACTTCTCTATGAAGCTGCTGTGTTTTCCCCAACTCTGTATTCTGGCCCAAAATACCCATGTAACATGGAGCAAAGCTGACTTACAAATAATTCCCAGTCCTCGAGTATCAACTATGACTTTGCTATGGTTTCCCCATTATCTAGTTGTCTAGGACTACGGTGTGAAGTCTTCGGTGTAACTCAACTATGCTTAATTCACTTACATCTATTTTTGTGTCTGCTTCTTCTTCTAAACCACATGTACCACGAAGATCTGTTTGTAGTTGCTAAGATTCAATTTTTCTTTTTTGTTCTAAATCTTATTTACCCTCTCCTTTTTTTTTCCTTACAAAATTTTAGTTACTTGCTTTCATTAACCTAGGTTTTATCTATTTAATATTTTACTAGGAATGTCACCTTTCTGCGTTTTGTTGGTTAGCATGTGTAGAGCTCAGCAGTTCTGATTACAAATATGTTGGAAATATTGAAAACAATGAATCGATAAACTGTCATTGAATCTGATAAGTTTGGCCTTTGAGGGCTTTGTTTGTGTTTTGATATTTTGGGACATATGATTATGAGATTCCTTATAACGAAACTATTTCCTTTTGTGTTGTGATAGTTTCAAGCCATTGGCTTACCTAGGTGTGTGGCATTGTCTTTTATCTTTCTACTATGAGTATCAGCTTGCTTTTCTTAATGGCAGTGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATGGTATGCACTCTTTGTAAAACATTTTCTTCGTCACTGTCTCTACTGTACATTTCCTGCAGTATCACAGAGCAGTAGGGAAAATTCTGCATCATATCGTATTGTCATACAGTTAAAATTAATTAATTGATGATGTAAGTTGAGCTCTGATTGAATGTGATTATTTCGTTCCATATTAGGTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAGGTATACGCTCTAACAGCACATCTAATTTGTGTCATGCTTTGATTCTTACTTCTGCTTTTACAGTTGCCACAGACAAATCCCGGCTTCAATAACACTCCCTTCAAGTTTACTAAATATTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATCGCGGAACACTTAAGGGTATGATTGTCAAAAGTTTCCATGCAAGAAATAGATATTCTGTACCTGTCGTTCAGTTCACCATGTTTTTGTTCCATTTTAGATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACAAAGCACAGGCCCACCTGTATACAATCATCAAGGTCATTTTCAAATGGTTTAGTTGTCCAATATTAAGTTTCTCTCAACATGCTGTGTTAATCTATTCGTATGTAGGTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGTTGATCATGA</genome_strand>
        <mrna_strand>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATG................................................................................................................................................................................GTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAG...............................................................TTGCCACAGACAAATCCCGGTTTCAATAACACTCCCTTCAAGTTTACTAAATACTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATTGCGGAACACTTAAGG..................................................................................ATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACACAGCACAGGCCCACCTGTATACAATCATCAAG.........................................................................GTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGGTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322112" ref_strand="+" ref_description="SGN-E322112 [cTOB-24-E11]">
      <seq>acccccccatctgaactcatttcttcatataccccccacccccacccaccccaccctaccccctactcacctcgcccacatcgccggtgattagttgatcggacggtgactctttatcctcaaacatgaccatgctgaatcctcaaccgctggatcagcaggaagacgaggagatgcttgtgccacattctgaattagttgaaggtcctcagcctttagttgaagggcctcagccaatggaagtggcagcttctgagaatgctactactggggagaaccaagccgtggacgagcctcaggcttcccggtttacatggacaattgatgaattctctcggttatctgtgaagaagctatattctgagccttttgttgttggtagttataaatggagagtgcttatatttccaaaaggaaacaacgtggagtgtttgtcaatgtatttagatgtggcagattcagctacattgccatatgggtggaacagatatgcacagttcagcttaacagttgtaaatcagataaaccccaaatattcagtgaaaaaagagacgcagcaccagtttaaccaaagagagagtgattggggcttcacatcattcatgcttctaagtgatctttatgatcccaataagggatatcttgtaaatgataaagttgttattgaagctgatgttgctgtaaggaaggtcattgattactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="44924" stop="41580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44624" g_stop="44470" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44469" i_stop="43774" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43773" g_stop="43686" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="243" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43685" i_stop="43558" i_length="128">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43557" g_stop="43410" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="391" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43409" i_stop="43316" i_length="94">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43315" g_stop="43158" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="549" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43157" i_stop="42035" i_length="1123">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42034" g_stop="41880" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="704" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E322112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44624" e_stop="44470"/>
          <exon e_start="43773" e_stop="43686"/>
          <exon e_start="43557" e_stop="43410"/>
          <exon e_start="43315" e_stop="43158"/>
          <exon e_start="42034" e_stop="41880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGATGTGAGTCTTCTCTACATTTCTTCTCTGAATTTTTCATTTTTTCAATCGGTATCTGTTTGTGTTTTGTAGGTTTAGTTTTTGTGAAATTCTGGTGTTAGTTACACAGATATGGTTTGCATTTGTGATCGGATAGGGTTTTTTATTTGCGGAGAGTTAGGGTTTAGGGATTGAATTGTGTTCATTGTTTTTAATTTTGAGTTGCGATGTCAGGGATGTGAAAAAGGTTGGATTTTTGATTCGTGTGAGGGAGTTAGGGTTTTACTAGTCAATAGATCATGCTTTCGACTTGATTTTATAATGCATGTATTACTGTTCAGGCACATTTGATCTTGTATCCTCCATCAGGTTGGCCGTAGAACATTCAAATTGCAGAAACACTTGCCGCGACACCAATGCTATCAAATTAAAAACAGATGCCTAATCTGAACTCATCTACCCCAAATAAAGCAAGCATCTTTACTAGGTCCTAGTAAAGCTGCTTGCTTTATTTGGGGTAGATGAGCTCAGGTTGGTGTTTTTATTTGATTCTTTTGATAACCATTGGTGTTGCGGAAAGTTTTTCTGCATTATGAATGATCTACGGGCAGCCTGATGGAGGATACAAGCGTATGTGTTGGGTAAATTTGTCTGGGAAGGTTGGGACAGATGAGCTCACACTAATCTCTGAAATCCTTTTTTTTTCTTGGGACAATTCAGCAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAGGTTGTTCCTCTTTTAGTTGTTACTGTTTTGGTCTCTTCTATGTTTAAGAATAGTTTAATTAGGCTTATGTTTGGCTTAGTTTTTGTTATAACATTTTGATGTGATCATATGGTGAATTTACTTAACAGTGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATGGTGAGTGGCATTTCTCATTTACACTGGTGGTTAAATTTTGATTTTTTTTTTAAAATTGGGTTATAATTGTCCTATGGCTGGCATTGGTTTGTAGGAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAGGTATTTTCTTGTCATGTATTCGTGCAGCTTAAGATTGAATCCCAAATTCGTCTGTATGATTATTTGGAAGTCAGTTTTATTTCCCTTGGTTGCCATTTCATCTGTCTAGAAATATTCTCTGTTTCTCCCTCAGTTGAAGTACACTTATTTGAACTCTGTTTAGGAAAAAGAATTAAAAAACAGTGTCAAACCTTTCCTGACATTGTATGTCTATTTTTAATTTTCTTTTGAATTGACTTCCTTTTCTTATTGTCATAAAAACCAACATCTTCTGAAACTTTTTGAAATGATATGGCCTAGCACTCACAACGTATCACCAACACAAGAAAATATCAAGTCATCGGAGTGATACAAAAGGTGCCATTTATAACATTACCGTTTTCAAAAAAAAAAGGTGCCATTTATGTAATAATCGAAGTTTCTTTTATTAATAAGTAATTCTAGGGTTTAGTTTTATTAGTCTAGTCTAGATTTTGGTGAATGAGTGTTCTACTCGTTGGTGGTGATTAAGGAATATCCCTATAGTGAACCCATTTGGATTTCCCTTGTTATGGTGGACGGTGGACCCATTAGTGAGTTCAATCTCTCTTCCCTTGGATTCGTTGTCCATGCTTTCTTCTAAATTCTGTTTTCCCCTTGTCTAATTTCTTTTGTTATCCCCTTGTTTTATCTTATTTCTTTACTTGTCTAATTTCCCTCTGACCCTGTCCAGCCCGGGACAAACATATTTATTGCATTTAATATGTGGAAATATACTTCATCCTATTGCTTTAAGCAAATTTGCAACTTTGTTACTCCAGGCTGCTCCAAATTCCTGAACGAGGCATCATAAACTTTATTAAGCTTGCTGTTAGTAGTCACAAAAAATCATTAAAAAGAAAGAATGAGATTCCTTAAACTGAAAATTGCAAGTCAAAGGTTTTTGAGCTTTTGACATTATATGAGTAATTTCTTTGGCCTGTGAACTGTATAGGATTAAGTGATGTACAAGTTTGTTAGGAGATTGTCTTGATTGTGAGATTCGTGAACTGAATGGCCAGGGAGCCCGAGATGTCGGTTAGTGCTGAACGATGTGAGTTTGATTCATCCTGGCATGAATTTGATATTTTTTTCTTTGTTGCAGAGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGG</genome_strand>
        <mrna_strand>ACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAG................................................................................................................................TGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATG..............................................................................................GAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701578" ref_strand="+" ref_description="SGN-E701578 [FA16BE04]">
      <seq>tctctctctatctctctattttcatttttctcccttggttttctcgatttcttcaattctccgggaagctagaacgataatttccattttttccgggagaatttcacctccgtttctcagctacagctataccgtatgattttcaggaatgtgtattctgtattgcaactgagggaaggaggaattcatcctacgtgaagtcgaggggtatacatatatacataatcattttatcgaagatggagggattgagagcttgttgtacaggattaatcgtcttttaatttgtggtatttctgttattttttcctggttttcttttatgattctatttgaggaatcaatttctgaattgaggctggacgattgattggatgtgcaatagaatatggattctcaaaattcgcccccgacgaccagccaggtcaactgttgttactgcgggtgcagcagttgttctgcaatgaacaggtcctgttcagggacttggctccgatctgtgaagcgaaaatttgatgaatataatgagaataagtttatgatcccaggctttgtcttacctctgaatgctcgtattgaaattgaaaatgaatgtacagcacttagggaaatggtaagtaagcaacaacacacaattcaggatttaggtgctgagttggaggaagaacgaaatgcgtcttcctcggcggcgaatgaggccatgtccatgattttgaggttgcaaggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="50625" stop="52634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50925" g_stop="51071" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51749" g_stop="52334" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="732" r_length="586" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E701578" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50925" e_stop="51071"/>
          <exon e_start="51749" e_stop="52334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAGGTACCTTAATATCATGGTCGTTTTTTTTTTTTAATTTTTTGTTTTTCGATCAATTTTAGATGTGTAAATATATATTTGTTCGTATTTATGTGCATCGATTTGCGTTTGTTTGATTTTTTGTGGTTTTCATATAAGGAATATTGATCATGTTTAAATGCAATGTCTGTTTTGATTGATTATAATTTTCATTTTGCGTAAGGATTGATTTGGTGTGATAATTGTATTAACGTAGGTTTAATGGTTCAGATTGTTGACGTGTGATATTATGTAACGATGGAGAAGAATATGATCTATTCAAACATTGTACTTCGTAAAATAATGCAGTACGGTATGATATGTTACTTTATGAAATAATACGTAACAGCCATACAAACAGAGTAGGGATACAACCATTTTGTTTTGGGTAGAAACCTCTGCTTAATTTATGTGAAATGTGTAGTTTCTTTGATAATGGTGGCGATGTAGAATTATTTATGTATTGAGTAAAATGTGGAAATACATATGGGCATCAACATTGATGGTATGAAGCTAATCTTGGCCTAGGCATTGCACATAGCTATTCATGTATTAATTATTGTTGGTGTCAGCTATTTTTTTTTGGAGTATAGCAATGTGAACCTAACTATAGGGTATTGTGCGGTAGGATTGGAATTGAAAAAAATGTGGTGTTTTTGCAGGAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGCAAGGAGAAAA</genome_strand>
        <mrna_strand>TCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCA-TTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTACGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTGTTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACAATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCGGCGAATGAGGCCATGTCCATGATTTTGAGGTTGCAAGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333029" ref_strand="+" ref_description="SGN-E333029 [cTOD-19-E21]">
      <seq>tatctctctattttcatttttctcccttggttttctcgatttcttcaattctccgggaagctagaacgataatttccatttttttccgggagaatttcacctccgtttctcagctacagctataccgtatgattttcaggaatgtgtattctgtattgcaactgagggaaggaggaattcatcctatgtgaagtcgaggggtatacatatatacataatcattttatcgaagatggagggattgagagcttgttgtacaggattaatcgtcttttaatttgtggtatttctgttattttttcctggttttcttttatgattctatttgaggaatcaatttctgaattgaggctggacgattgattggatgtgcaatagaatatggattctcaaaattcgcccccgacgaccagccaggtcaactgttgttactgcgggtgcagcagttgttctgcaatgaacaggtcctattcagggacttggctccgatctgtgaagcgaaaatttgatgaatataatgagaataagtttatgatcccaggctttgtcttacctctgaatgctcgtattgaaattgaaaatgaatgtacagcacttagggaaatggtaagtaagcaacaacacacgattcaggatttaggtgctgagttggaggaagaacgaaatgcgtcttcctcggcagcgaatgaggncatgtccatgattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="50633" stop="52617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50933" g_stop="51071" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51749" g_stop="52317" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="708" r_length="569" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E333029" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50933" e_stop="51071"/>
          <exon e_start="51749" e_stop="52317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAGGTACCTTAATATCATGGTCGTTTTTTTTTTTTAATTTTTTGTTTTTCGATCAATTTTAGATGTGTAAATATATATTTGTTCGTATTTATGTGCATCGATTTGCGTTTGTTTGATTTTTTGTGGTTTTCATATAAGGAATATTGATCATGTTTAAATGCAATGTCTGTTTTGATTGATTATAATTTTCATTTTGCGTAAGGATTGATTTGGTGTGATAATTGTATTAACGTAGGTTTAATGGTTCAGATTGTTGACGTGTGATATTATGTAACGATGGAGAAGAATATGATCTATTCAAACATTGTACTTCGTAAAATAATGCAGTACGGTATGATATGTTACTTTATGAAATAATACGTAACAGCCATACAAACAGAGTAGGGATACAACCATTTTGTTTTGGGTAGAAACCTCTGCTTAATTTATGTGAAATGTGTAGTTTCTTTGATAATGGTGGCGATGTAGAATTATTTATGTATTGAGTAAAATGTGGAAATACATATGGGCATCAACATTGATGGTATGAAGCTAATCTTGGCCTAGGCATTGCACATAGCTATTCATGTATTAATTATTGTTGGTGTCAGCTATTTTTTTTTGGAGTATAGCAATGTGAACCTAACTATAGGGTATTGTGCGGTAGGATTGGAATTGAAAAAAATGTGGTGTTTTTGCAGGAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTG</genome_strand>
        <mrna_strand>TATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGNCATGTCCATGATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316991" ref_strand="+" ref_description="SGN-E316991 [cTOA-27-P18]">
      <seq>tattttcatttttctcccttggttttctcgatttcttcaattctccgggaagctagaacgataatttccatttttttccgggagaatttcacctccgtttctcagctacagctataccgtatgattttcaggaatgtgtattctgtattgcaactgagggaaggaggaattcatcctatgtgaagtcgaggggtatacatatatacataatcattttatcgaagatggagggattgagagcttgttgtacaggattaatcgtcttttaatttgtggtatttctgttattttttcctggttttcttttatgattctatttgaggaatcaatttctgaattgaggctggacgattgattggatgtgcaatagaatatggattctcaaaattcgcccccgacgaccagccaggtcaactgttgttactgcgggtgcagcagttgttctgcaatgaacaggtcctattcagggacttggctccgatctgtgaagcgaaaatttgatgaatataatgagaataagtttatgatcccaggctttgtcttacctctgaatgctcgtattgaaattgaaaatgaatgtacagcacttagggaaatggtaagtaagcaacaacacacgattcaggatttaggtgctgagttggaggaagaacgaaatgcgtcttcctcggcagcgaatgaggccatgtccatgattttgaggctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="50641" stop="52624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50941" g_stop="51071" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51749" g_stop="52324" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="707" r_length="576" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E316991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50941" e_stop="51071"/>
          <exon e_start="51749" e_stop="52324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAGGTACCTTAATATCATGGTCGTTTTTTTTTTTTAATTTTTTGTTTTTCGATCAATTTTAGATGTGTAAATATATATTTGTTCGTATTTATGTGCATCGATTTGCGTTTGTTTGATTTTTTGTGGTTTTCATATAAGGAATATTGATCATGTTTAAATGCAATGTCTGTTTTGATTGATTATAATTTTCATTTTGCGTAAGGATTGATTTGGTGTGATAATTGTATTAACGTAGGTTTAATGGTTCAGATTGTTGACGTGTGATATTATGTAACGATGGAGAAGAATATGATCTATTCAAACATTGTACTTCGTAAAATAATGCAGTACGGTATGATATGTTACTTTATGAAATAATACGTAACAGCCATACAAACAGAGTAGGGATACAACCATTTTGTTTTGGGTAGAAACCTCTGCTTAATTTATGTGAAATGTGTAGTTTCTTTGATAATGGTGGCGATGTAGAATTATTTATGTATTGAGTAAAATGTGGAAATACATATGGGCATCAACATTGATGGTATGAAGCTAATCTTGGCCTAGGCATTGCACATAGCTATTCATGTATTAATTATTGTTGGTGTCAGCTATTTTTTTTTGGAGTATAGCAATGTGAACCTAACTATAGGGTATTGTGCGGTAGGATTGGAATTGAAAAAAATGTGGTGTTTTTGCAGGAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGC</genome_strand>
        <mrna_strand>TATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547952" ref_strand="+" ref_description="SGN-E547952 [TUS-56-J13]">
      <seq>gagactatcaatgggcaattcgaagttcctcccttcgattaccctccattgaaatgcactattaatgaaaatcaagtatacacagaatttgataatgacattgttgatgttgagaaatatgcatttgaagagaccccacgttcgtgtgaccaattgcgggatttggagcataggatcaatcaattggagaggacgccaagaagcactgatggggatcttttcaagaacaacatacttgaaaaagtgatagttggtcattccccaaggaggaatagacatcttagaaagttttcaactgatagtgtaggatctcccttcattacaaataaagaaattaactcagatttcatctcagattctccaagatttggtgggagtattagaaaaacagaatattcacaaacagaagagcgttcaaacttgaggaaggtggataattcatcagaaattggagatgacatgagtgaccgagtttatacaattgattctgtacatcagggggctggatataatggtgtgtcagaactcaagtcttcagctggaatggttgacgactataccccaagggattcattaaataacacagattttggagatccagaggtcacaaagttgtattttaggctccaggcacttgaggctgaccgggaatcaatgagacaggctatgattgctatgcggactgataaagcacaggtgatattgctcaaggagattgctcagcagttatgcaaagagatgtctccagccgtgagaaaacctgcaaagagacatctgntattgggagcttttcatgcatgtctatatttcagtggatcacatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="52279" stop="53697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52579" g_stop="53391" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="812" r_length="812" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E547952" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52579" e_stop="53391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTACACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAGAAGACATCTGTAATTGGGAGCTTTTCATGCATGTCTATATTCAAG</genome_strand>
        <mrna_strand>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTATACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAG-AGACATCTGNTATTGGGAGCTTTTCATGCATGTCTATATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267590" ref_strand="+" ref_description="SGN-E267590 [cLEI-8-D9]">
      <seq>agactatcaatgggcaattcgaagttcctcccttcgattaccctccattgaaatgcactattaatgaaaatcaagtatacacagaatttgataatgacattgttgatgttgagaaatatgcatttgaagagaccccacgttcgtgtgaccaattgcgggatttggagcataggatcaatcaattggagaggacgccaagaagcactgatggggatcttttcaagaacaacatacttgaaaaagtgatagttggtcattccccaaggaggaatagacatcttagaaagttttcaactgatagtgtaggatctcccttcattacaaataaagaaattaactcagatttcatctcagattctccaagatttggtgggagtattagaaaaacagaatattcacaaacagaagagcgttcaaacttgaggaaggtggataattcatcagaaattggagatgacatgagtgaccgagtttatacaattgattctgtacatcagggggctggatataatggtgtgtcagaactcaagtcttcagctggaatggttgacgactataccccaagggattcattaaataacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="52280" stop="53462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52580" g_stop="53162" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E267590" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52580" e_stop="53162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTACACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACAC</genome_strand>
        <mrna_strand>AGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTATACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704501" ref_strand="+" ref_description="SGN-E704501 [FA24BH06]">
      <seq>gccggttttgttagaagggtgtttggagaattggcctggattggagaaatggaatagggattatcttgttaagaaatgtggggatgtgaaattttctgttgggccggtggaaatgaaacttgaagactactttaagtactctgatcaagtgagggaagaaaggcccttgtatttgtttgacccaaagtttgcggagaaaattcctcaattaggaaaggattatgatgtcccaatgtacttcaatgaggatttgtttagtgttttgggtaatgagaggccagattataggtggattataattggacctgcagggtctggctcgtcatttcacatcgatccaaattctacctctgcttggaatgcggtaaccaaaggatccaagaaatggatattatttcccccggatgtggtgccaccaggggttcatccaagccctgacggtgcagaagtagcaagtcctgtttcaatcatagaatggttcatgaacttttacaacgcaaccaagaattggaaaaagagacctatcgaatgtatctgcaaggcgggtgaagttatttttgtacctaatggatggtggcatttggtcatcaatttagaggattcaattgccattacacagaacttcgttagcaggaggaatttagtgaatgttttggagttcctaaaaaggccaaatgcttgcactcttgtgtctggaacaagcgacagagtcaatttgcacgacaaatttaagaatgccatcgaagcacatcttcctggtactattgatgagttgactctgaaagccgaggagaaaaaggcgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="56843" stop="59279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57143" g_stop="57775" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57776" i_stop="58806" i_length="1031">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58807" g_stop="58979" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="806" r_length="173" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E704501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57143" e_stop="57775"/>
          <exon e_start="58807" e_stop="58979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAGGTATGCTACTTTTGTCTCCTATATTTCTGTCACTTGATAAAATTTGATATTGTTTTCATGCTTGCTGACAAATAATTATATGTACTAGTTTCCTTAATAGCATGTAATGGTTCTGTTTTATAAGGTGGACACTAGATATAATGCAAAAGTTCACTATTGGTTTAGTAGCTGTAATTTAATATCACATATACTCTCAGGTTAAGCTCATTAACTAGAAAAACGAACCCATCAACTCACGAATGTTTGCTTGTTTCGATCTTTTATCACTGTAAACATTTCCTCTCATGTGATAGTTTTGGATAGACCACCTTAAAGCTTGAGATGTTTTTACTGATAAAAGACCTAAACAAACAAACTTTAGTGAGTTCGTGAACTATGGTGACTCATTTTTGTAGTATGGGATTGAATGTTTGTTGTGGGCTTCTTTTTAAGAAAAGATACTTCTTTAGTGTTCTATTCTTTCTCCCCTTTCTTCTAATCCTCACATATCCTAGTCAGGATTAATTAAGTCAAACCACGATAACCTCATCACTTGAAGATTTGTTCTCAAACACAGATATGCATAATCATTCTTAACTGAATTTGCTACTCCATTGTGAAAGAGTGCTGATGTTGATGCCTATCTGGAGAGAAAGTTGTATCATCATTTTGCAGCCTTAGGTATGCAGCTTTTCTTGTGCTATGGATAAGATGATATCTTCCCTAGACATGTGACGTGATCTCTTCTGTAGCTATTACTTTCATTTTCATCTTCTTGATGCTTTTTTTTAATTGGAACTGCTTACTTCATCTAAAAAAGAAAACTTTCCTCGATAACACTCTGAGCCCTGCACTTATGTCTGCTTAGGATCACCACCAATATTTTCTAAGACAACTCTCTTCATCCCCTTGTGTATCTGTTTAGGATCTCCTTCCCGGTGTGTCTATTTAGGATCTCCAGTGAGTTTGGAGAGGATAACTCTTTCAGAATTCCCTTGCTCGGTCCAATATCAATTTTTTGCTGTATTTTCAACTGTCATTTCGCCTTGCAGGAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGC</genome_strand>
        <mrna_strand>GCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E205443" ref_strand="-" ref_description="SGN-E205443 [cLEC-28-D8]">
      <seq>agacgataccttgctcgtgatagtggtacctatggaccaatgccacgcggaacacataagggactcctgggaatgcctttcaataccactgctatagatggtatatattgtgttggcgatagttgcttcccagaacaaggtgttatagctgtagccttttcaggagtaatgtgcgctcatcgtgttgcagctgacttagggtttgaaaaaaaatcagatgtgctggacagtgctcttcttagactacttggttggttaaggccattagcatgatatctacttgttaagctaaaaagaaacatttgacacaaaaaaagaaagttcattatgcattcactttttctttatatcaataacctggaaaataaggttcctactgaggttcccccagtatagaaatcccagattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="67285" stop="65755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66985" g_stop="66896" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.797" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66803" g_stop="66695" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="199" r_length="109" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430">
            <donor d_prob="0.074" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66264" g_stop="66055" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="409" r_length="210" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E205443" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205443" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66985" e_stop="66896"/>
          <exon e_start="66803" e_stop="66695"/>
          <exon e_start="66264" e_stop="66055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACTGTGAGTTAATCATCCTTTACGTATGTAGTTGCTTTTATTGTTCTGCTGGTACAAACAGAATAAACTGTTCCGTAATGTTTCTGAGCTTACAGGCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAGGTAAACATGATAGTCCAAATAGTTCATTTTCTGAGCTTGAAAATCCTAATAACATTTGTGCAATATCTATTTACACATCATAAGCTCGACCAAATATTTATAATGTGGCCTTCAAAAATGAAAATGAATGAGTATTTACAACGTCGAGCATCAATAGCCCCTTAAATTTGCTAGTAAATTTCATTTAGACACTCTAACTATAACATATTACAATTGAGCACGTGAACACATGATAAAGCGCCTGTTATATAAGATAAGTCAACCACACAAAATATGTGACCTCCTCCTTCAACTATACACATCAGCTTTAATTGGAACAAGGGAGAGGTTTATGGCTTAGTCAAGGGTTGTCGATGTGTTCCGCCTTAATTTGAAGTCCATATAAGTAACTGTCTGTTTGGTTTGACATCTTCTCTTTTTTCTGTCACAGGGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTT</genome_strand>
        <mrna_strand>AGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACATAAGGGACTCCTGGGAATGCCTTTCAATACCACT............................................................................................GCTATAGATGGTATATATTGTGTTGGCGATAGTTGCTTCCCAGAACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGCCATTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGCATTCACTTTTTCTTTATATCAATAACCTGGAAAATAAGGTTCCTACTGAGGTTCCCCCAGTATAGAAATCCCAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E276489" ref_strand="+" ref_description="SGN-E276489 [cLEN-17-P18]">
      <seq>taaaaccattgtatcgaatgctaccagatgggatacttttggaaagcttttaaaagctgagaatctgccaaaagaagaagaaaatttccagaaagcttatgtaaaagcaccttcttttctttctattcatatgggagttaaagcagatgtactcccaccagacacagattgtcaccattttgtcctcgaggatgattggacaaatttggagaaaccatatggaagtatattcttgagtattccaacagttcttgattcctcattggccccagaaggacaccatattcttcacatttttacaacatcgagcattgaagattgggagggactctctccgaaagactatgaagcgaagaaagaggttgttgctgaaaggattataagcagacttgaaaaaacactcttcccagggcttaagtcatctattctctttaaggaggtgggaactccaaagacccacagacgataccttgctcgtgatagtggtacctatggaccaatgccacgcggaacacctaagggactcctgggaatgcctttcaataccactgctatagatggtctatattgtgttggcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="68216" stop="66473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67916" g_stop="67876" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67736" g_stop="67588" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="190" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67509" g_stop="67375" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="325" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67268" g_stop="67155" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="439" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67006" g_stop="66896" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="550" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66803" g_stop="66773" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="581" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E276489" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67916" e_stop="67876"/>
          <exon e_start="67736" e_stop="67588"/>
          <exon e_start="67509" e_stop="67375"/>
          <exon e_start="67268" e_stop="67155"/>
          <exon e_start="67006" e_stop="66896"/>
          <exon e_start="66803" e_stop="66773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAGGTACTACGGCAGTTCAATTGATTTGCTATTTATTTTTTCATACTTGATGTTCCCATTCATGATTCCTTGATTTTACAGGATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAGGTAAATTCAGTACACTCCTTGAGTGTTGTTGGTAGTAACCTCTTCCACATCTATGTCTCTTTTTCCTTTTTATGGAAATTAAAGTATGGCCCTTTATCCTTACTAGGGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAGGTTAAGTTCGTGATTTTATGAACTCAATAGTTGTTCATAATGAGCAATATTATCTGTCTTCAATAGCAAATCCACATGCTCTTATGCTTGCTGAAATAGTTTTGGCCGTGGAGTTACACCATCTATGTTTACAATTGAATTCTTGTAGGTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACTGTGAGTTAATCATCCTTTACGTATGTAGTTGCTTTTATTGTTCTGCTGGTACAAACAGAATAAACTGTTCCGTAATGTTTCTGAGCTTACAGGCTATAGATGGTCTATATTGTGTTGGCGATA</genome_strand>
        <mrna_strand>TAAAACCATTGTATCGAATGCTACCAGATGGGATACTTTTG...........................................................................................................................................GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG..............................................................................GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG..........................................................................................................GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG....................................................................................................................................................GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT............................................................................................GCTATAGATGGTCTATATTGTGTTGGCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285616" ref_strand="+" ref_description="SGN-E285616 [cLES-5-G24]">
      <seq>gggatacttttggaaagcttttaaaagctgagaatctgccaaaagaagaagaaaatttccagaaagcttatgtaaaagcaccttcttttctttctattcatatgggagttaaagcagatgtactcccaccagacacagattgtcaccattttgtcctcgaggatgattggacaaatttggagaaaccatatggaagtatattcttgagtattccaacagttcttgattcctcattggccccagaaggacaccatattcttcacatttttacaacatcgagcattgaagattgggagggactctctccgaaagactatgaagcgaagaaagaggttgttgctgaaaggattataagcagacttgaaaaaacactcttcccagggcttaagtcatctattctctttaaggaggtgggaactccaaagacccacagacgataccttgctcgtgatagtggtacctatggaccaatgccacgcggaacacctaagggactcctgggaatgcctttcaataccactgctatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="68044" stop="66586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67887" g_stop="67876" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="0.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67736" g_stop="67588" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="161" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67509" g_stop="67375" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="296" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67268" g_stop="67155" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="410" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67006" g_stop="66896" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="521" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66803" g_stop="66795" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="530" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E285616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67887" e_stop="67876"/>
          <exon e_start="67736" e_stop="67588"/>
          <exon e_start="67509" e_stop="67375"/>
          <exon e_start="67268" e_stop="67155"/>
          <exon e_start="67006" e_stop="66896"/>
          <exon e_start="66803" e_stop="66795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAGGTACTACGGCAGTTCAATTGATTTGCTATTTATTTTTTCATACTTGATGTTCCCATTCATGATTCCTTGATTTTACAGGATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAGGTAAATTCAGTACACTCCTTGAGTGTTGTTGGTAGTAACCTCTTCCACATCTATGTCTCTTTTTCCTTTTTATGGAAATTAAAGTATGGCCCTTTATCCTTACTAGGGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAGGTTAAGTTCGTGATTTTATGAACTCAATAGTTGTTCATAATGAGCAATATTATCTGTCTTCAATAGCAAATCCACATGCTCTTATGCTTGCTGAAATAGTTTTGGCCGTGGAGTTACACCATCTATGTTTACAATTGAATTCTTGTAGGTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACTGTGAGTTAATCATCCTTTACGTATGTAGTTGCTTTTATTGTTCTGCTGGTACAAACAGAATAAACTGTTCCGTAATGTTTCTGAGCTTACAGGCTATAGAT</genome_strand>
        <mrna_strand>GGGATACTTTTG...........................................................................................................................................GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG..............................................................................GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG..........................................................................................................GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG....................................................................................................................................................GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT............................................................................................GCTATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254179" ref_strand="+" ref_description="SGN-E254179 [cLEG-34-O12]">
      <seq>gttggtggagttggcgagatcgccaaatccttagcaaaaggcttggatgatcacggaagtcatatactttatagggcaaacgttacaagtatcattgtggacaatggcaaagctgtgggagtgaagctttctgacgggaggaagttttatgctaaaaccatagtatcgaatgctaccagatgggatacttttggaaagcttttaaaagctgagaatctgccaaaagaagaagaaaatttccagaaagcttatgtaaaagcaccttcttttctttctattcatatgggagttaaagcagatgtactcccaccagacacagattgtcaccattttgtcctcgaggatgattggacaaatttggagaaaccatatggaagtatattcttgagtattccaacagttcttgattcctcattggccccagaaggacaccatattcttcacatttttacaacatcgagcattgaagattgggagggactctctccgaaagactatgaagcgaagaaagaggttgttgctgaaaggattataagcagacttgaaaaaacactcttcccagggcttaagtcatctattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="69000" stop="66862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68700" g_stop="68587" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67954" g_stop="67876" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="193" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67736" g_stop="67588" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="342" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67509" g_stop="67375" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="477" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67268" g_stop="67162" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="584" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E254179" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68700" e_stop="68587"/>
          <exon e_start="67954" e_stop="67876"/>
          <exon e_start="67736" e_stop="67588"/>
          <exon e_start="67509" e_stop="67375"/>
          <exon e_start="67268" e_stop="67162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCTGTGAGTTTTCTGTCGTAAGACTATTTAACTTTTCTTATGATTGATTATTCCCATCATAAAATGCAAAAGCTGTAGTCTGGTGTTTGTGTTAGAAAGTTGTAGCCGACACTCTTTTGATGTTCAAGGACTCATGCTTCACACACTCATAACTGTGGTAAAATCTTCTTCCCATGTGATACGCCTTTGGTGTCCCTAAATGCATGCCGTTTTAAAATTTAAGGTTACATTAGCATGTCAGAGTGTTAAAACATTATAAGAAAAGAATTGGCTAGTAAGTATATAGAAAAAGAAGAAAAGAATGAGGAGAACGAAGAGGGAAGAACAAATTACTTCTGTTAAAATGTCATGCATTTGTTATAGTTGATTGTAATTGATATAGTGTACTATTTTGCTTATCACAACATTGTGTAGATTCACATCCCCTTTAATTGTATTTCAGTTACATCCCTGAAGTTATTCTACTGATGTAGGGTCTGTACTTTTACTGTTCTACATACATGAATAAATTGTACCTAACAATATAATGACATTGTATGTTGCCATGTCATAATGGTGTCTTGTGTAGCATCTTCAATGTTGTCTTTGCCAGTATCTGCGCAAGTTCATTTTCTCTAATTCTTCTTTTTCTTTAGGTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAGGTACTACGGCAGTTCAATTGATTTGCTATTTATTTTTTCATACTTGATGTTCCCATTCATGATTCCTTGATTTTACAGGATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAGGTAAATTCAGTACACTCCTTGAGTGTTGTTGGTAGTAACCTCTTCCACATCTATGTCTCTTTTTCCTTTTTATGGAAATTAAAGTATGGCCCTTTATCCTTACTAGGGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTT</genome_strand>
        <mrna_strand>GTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCATATACTTTATAGGGCAAACGTTACAAGTATCATTGTGGACAATGGCAAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG...........................................................................................................................................GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG..............................................................................GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG..........................................................................................................GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710801" ref_strand="+" ref_description="SGN-E710801 [FA56DB04]">
      <seq>cttgaatgcttgactcttgcctactatttgccccagaatgctggtagcatcgctcggaagtatataagagatcctgggttgctgtcttttatagatgcagagtgctttatcgtgagtacagttaatgcattacaaacaccaatgatcaatgcaagcatggttctatgtgacagacattttggcggaatcaactaccccgttggtggagttggcgagatcgccaaatccttagcaaaaggcttggatgatcacggaagtcagatactttatagggcaaatgttacaagtatcattttggcacaatggcaaagctgtgggagcgaagctttctgacgggaggaagttttatgctaaaaccatagtatcgaatgctaccagatgggatacttttggaaagcttttaaaagctgagaatctgccaaaagaagaagaaaatttccagaaagcttatgtaaaagcaccttcttttctttctattcatatgggagttaaagcagatgtactcccaccagacacagattgtcaccattttgtcctcgaggatgattggacaaatttggagaaaccatatggaagtatattcttgagtattccaacagttcttgattcctcattggccccagaaggacaccatattcttcacatttttacaacatcgagcattgaagattgggagggactctctcccgaaagactatgaagcgaagaaagaggttgttgctgaaaggattataaagcagacttgaaaaaacactcttccccagggcttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="69347" stop="66875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="68964" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="102" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68876" g_stop="68820" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="159" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68739" g_stop="68587" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="313" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67954" g_stop="67876" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="392" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67736" g_stop="67588" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="541" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="67509" g_stop="67375" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="676" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67268" g_stop="67175" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="773" r_length="97" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E710801" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="68964"/>
          <exon e_start="68876" e_stop="68820"/>
          <exon e_start="68739" e_stop="68587"/>
          <exon e_start="67954" e_stop="67876"/>
          <exon e_start="67736" e_stop="67588"/>
          <exon e_start="67509" e_stop="67375"/>
          <exon e_start="67268" e_stop="67175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAGGTGAGGCGAATAATCTGTGTTACTTATTATCAGCTCCAATGATTTCTTTACCTCTTAAAGAATTCAACTCCATTGTCTCTTTTGCAGTGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATGGTAATTCTGCATATTAACCTTAGGCCGTGTTGTGTTTCGTGATATTCAGTTCCACTTCCTCGTGAGTTTTCTTTCTGCAGGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGG-ACAATGGCAAAGCTGTGAGTTTTCTGTCGTAAGACTATTTAACTTTTCTTATGATTGATTATTCCCATCATAAAATGCAAAAGCTGTAGTCTGGTGTTTGTGTTAGAAAGTTGTAGCCGACACTCTTTTGATGTTCAAGGACTCATGCTTCACACACTCATAACTGTGGTAAAATCTTCTTCCCATGTGATACGCCTTTGGTGTCCCTAAATGCATGCCGTTTTAAAATTTAAGGTTACATTAGCATGTCAGAGTGTTAAAACATTATAAGAAAAGAATTGGCTAGTAAGTATATAGAAAAAGAAGAAAAGAATGAGGAGAACGAAGAGGGAAGAACAAATTACTTCTGTTAAAATGTCATGCATTTGTTATAGTTGATTGTAATTGATATAGTGTACTATTTTGCTTATCACAACATTGTGTAGATTCACATCCCCTTTAATTGTATTTCAGTTACATCCCTGAAGTTATTCTACTGATGTAGGGTCTGTACTTTTACTGTTCTACATACATGAATAAATTGTACCTAACAATATAATGACATTGTATGTTGCCATGTCATAATGGTGTCTTGTGTAGCATCTTCAATGTTGTCTTTGCCAGTATCTGCGCAAGTTCATTTTCTCTAATTCTTCTTTTTCTTTAGGTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAGGTACTACGGCAGTTCAATTGATTTGCTATTTATTTTTTCATACTTGATGTTCCCATTCATGATTCCTTGATTTTACAGGATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAGGTAAATTCAGTACACTCCTTGAGTGTTGTTGGTAGTAACCTCTTCCACATCTATGTCTCTTTTTCCTTTTTATGGAAATTAAAGTATGGCCCTTTATCCTTACTAGGGACTCTCT-CCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTAT-AAGCAGACTTGAAAAAACACTCTT-CCCAGGGCTTAAGT</genome_strand>
        <mrna_strand>CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG.......................................................................................TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG................................................................................GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGCACAATGGCAAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG...........................................................................................................................................GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG..............................................................................GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG..........................................................................................................GGACTCTCTCCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAAGCAGACTTGAAAAAACACTCTTCCCCAGGGCTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E335506" ref_strand="+" ref_description="SGN-E335506 [cTOE-2-G20]">
      <seq>ttttctttctgcaagttctatgtgacagacattttggcggaatcaactaccccgttggtggagttggcgagatcgccaaatccttagcaaaaggcttggatgatcacggaagtcagattctttatagggcaaatgttacaagtatcattctggacaatggcaaagctgtgggagtgaagctttctgacgggaggaagccttatgctaaaaccatagtatcgaatgctaccatatgggatacttttggaaagctgttaaaagctgagaatctgccttaagaagaataaaagttccagaaagcttatggaaaagcacctttttttctttctattcatatgggagttaaagcagatgtactcccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="69053" stop="67319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68753" g_stop="68587" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632">
            <donor d_prob="0.885" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67954" g_stop="67876" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="246" r_length="79" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="0.94"/>
            <acceptor a_prob="0.918" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67736" g_stop="67619" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="364" r_length="118" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E335506" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68753" e_stop="68587"/>
          <exon e_start="67954" e_stop="67876"/>
          <exon e_start="67736" e_stop="67619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTCTGCAGGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCTGTGAGTTTTCTGTCGTAAGACTATTTAACTTTTCTTATGATTGATTATTCCCATCATAAAATGCAAAAGCTGTAGTCTGGTGTTTGTGTTAGAAAGTTGTAGCCGACACTCTTTTGATGTTCAAGGACTCATGCTTCACACACTCATAACTGTGGTAAAATCTTCTTCCCATGTGATACGCCTTTGGTGTCCCTAAATGCATGCCGTTTTAAAATTTAAGGTTACATTAGCATGTCAGAGTGTTAAAACATTATAAGAAAAGAATTGGCTAGTAAGTATATAGAAAAAGAAGAAAAGAATGAGGAGAACGAAGAGGGAAGAACAAATTACTTCTGTTAAAATGTCATGCATTTGTTATAGTTGATTGTAATTGATATAGTGTACTATTTTGCTTATCACAACATTGTGTAGATTCACATCCCCTTTAATTGTATTTCAGTTACATCCCTGAAGTTATTCTACTGATGTAGGGTCTGTACTTTTACTGTTCTACATACATGAATAAATTGTACCTAACAATATAATGACATTGTATGTTGCCATGTCATAATGGTGTCTTGTGTAGCATCTTCAATGTTGTCTTTGCCAGTATCTGCGCAAGTTCATTTTCTCTAATTCTTCTTTTTCTTTAGGTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACC</genome_strand>
        <mrna_strand>TTTTCTTTCTGCAAGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATTCTTTATAGGGCAAATGTTACAAGTATCATTCTGGACAATGGCAAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGTGAAGCTTTCTGACGGGAGGAAGCCTTATGCTAAAACCATAGTATCGAATGCTACCATATGGGATACTTTTG...........................................................................................................................................GAAAGCTGTTAAAAGCTGAGAATCTGCCTTAAGAAGAATAAAAGTTCCAGAAAGCTTATGGAAAAGCACCTTTTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262721" ref_strand="+" ref_description="SGN-E262721 [cLEG-63-K12]">
      <seq>aaatttccacatgaaaaggaagggattatcaaattttacagtgaatgctggaagatctttaattctctgaattcattggaactgaagtctttggaggaacccatctacctttttggccagttctttaagaagccccttgaatgcttgactcttgcctactatttgccccagaatgctggtagcatcgctcggaagtatataagagatcctgggttgctgtcttttatagatgcagagtgctttatcgtgagtacagttaatgcatttacaacacccatgatcaatgcaagcatgggttctatgtgacagacattttgggcggaatcaactacccgttggggggagttggcgagatcgcccaatccctagcaaaaggctttggatgatcacggaaagtcagatacttttataggggcaaatgttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="69981" stop="68315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69681" g_stop="69628" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90">
            <donor d_prob="0.357" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69537" g_stop="69438" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="154" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69046" g_stop="68964" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="237" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68876" g_stop="68820" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="295" r_length="58" r_score="0.895"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80">
            <donor d_prob="0.949" d_score="0.88"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68739" g_stop="68615" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="425" r_length="130" r_score="0.872"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E262721" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69681" e_stop="69628"/>
          <exon e_start="69537" e_stop="69438"/>
          <exon e_start="69046" e_stop="68964"/>
          <exon e_start="68876" e_stop="68820"/>
          <exon e_start="68739" e_stop="68615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAGGTTTGTCTTCATTAAGGTGTCTGCAGGTTTGGCTTAAATTTTGGACTCCTTGATTTAGACTCAAATCATATGATGAATATGGATGCACAGATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTGGTAAGTTTTTCCTTGCTTTAACTTCAAATATAGTATTCCTTGAATTCGCACATATCCATTGGTTGGACTAATTCAGTAATAAGTCCCCAATCATGGAGTCACTTTTTATCCCCAAGGGCTTAGTTCAAGTAGCAAAGTTTGTGGGACTTGTGACTTTGGTCACCGGTTTGAGCCCTGTGGCATGCGAACAAAGCTAGTTATTTAAGTGAAGAATGGTAAAGGGGAGGGGCCATTATCCCCGAGTTTTGAGCACTATTGATGGTCCTGAGTGTTTGCCCTCGGTCATCAAAAAAATTTAAGGAGTCATCTTTCACGCTGATGTGTGCAGCGCGCGACGTGCTTAATTATCCTACCGTAGAATCTTAATTTATGCCATCATTATTCATTACAGCCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAGGTGAGGCGAATAATCTGTGTTACTTATTATCAGCTCCAATGATTTCTTTACCTCTTAAAGAATTCAACTCCATTGTCTCTTTTGCAGTGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCAT-GGTAATTCTGCATATTAACCTTAGGCCGTGTTGTGTTTCGTGATATTCAGTTCCACTTCCTCGTGAGTTTTCTTTCTGCAGGTTCTATGTGACAGACATTTT-GGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGC-TTGGATGATCACGG-AAGTCAGATAC-TTTATA-GGGCAAATGTTAC</genome_strand>
        <mrna_strand>AAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG..........................................................................................ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG.......................................................................................TGCTTTATCGTGAGTACAGTTAATGCATTTACAACACCCATGATCAATGCAAGCATGG................................................................................GTTCTATGTGACAGACATTTTGGGCGGAATCAACTACCCGTTGGGGGGAGTTGGCGAGATCGCCCAATCCCTAGCAAAAGGCTTTGGATGATCACGGAAAGTCAGATACTTTTATAGGGGCAAATGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250852" ref_strand="+" ref_description="SGN-E250852 [cLEG-13-D15]">
      <seq>cacctgccttttgacctttctgttcgtatacaccgagagtgtgatgacttcagtgaagagctggtgagtcaatttccacatgaaaaggaagggattatcaaattttacagtgaatgctggaacatctttaatcctctgacattcattggaactgaagtctttggaggaacccatctacctttttggccagttctttaataagccccttgaatgcttgactcttgcctactatttgccccagaatgctggtagcatcgctcggaagtatataacagatcctgggttgctgtcttttatagatgcagagtgctttatcgtgagtacagttaatgcattacaaacaccaatgatcaatgccagcatggttctatgtgacagacattttggcggaatcaactaccccgttggtggagttggcgagatcgccaaatccttaacaaaaggcttggatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="70039" stop="68349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69750" g_stop="69628" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90">
            <donor d_prob="0.357" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69537" g_stop="69438" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="224" r_length="101" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.883" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69046" g_stop="68964" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="307" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68876" g_stop="68820" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="364" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68739" g_stop="68649" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="455" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E250852" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69750" e_stop="69628"/>
          <exon e_start="69537" e_stop="69438"/>
          <exon e_start="69046" e_stop="68964"/>
          <exon e_start="68876" e_stop="68820"/>
          <exon e_start="68739" e_stop="68649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAGGTTTGTCTTCATTAAGGTGTCTGCAGGTTTGGCTTAAATTTTGGACTCCTTGATTTAGACTCAAATCATATGATGAATATGGATGCACAGATCTTTAATTCTCTGA-ATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTGGTAAGTTTTTCCTTGCTTTAACTTCAAATATAGTATTCCTTGAATTCGCACATATCCATTGGTTGGACTAATTCAGTAATAAGTCCCCAATCATGGAGTCACTTTTTATCCCCAAGGGCTTAGTTCAAGTAGCAAAGTTTGTGGGACTTGTGACTTTGGTCACCGGTTTGAGCCCTGTGGCATGCGAACAAAGCTAGTTATTTAAGTGAAGAATGGTAAAGGGGAGGGGCCATTATCCCCGAGTTTTGAGCACTATTGATGGTCCTGAGTGTTTGCCCTCGGTCATCAAAAAAATTTAAGGAGTCATCTTTCACGCTGATGTGTGCAGCGCGCGACGTGCTTAATTATCCTACCGTAGAATCTTAATTTATGCCATCATTATTCATTACAGCCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAGGTGAGGCGAATAATCTGTGTTACTTATTATCAGCTCCAATGATTTCTTTACCTCTTAAAGAATTCAACTCCATTGTCTCTTTTGCAGTGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATGGTAATTCTGCATATTAACCTTAGGCCGTGTTGTGTTTCGTGATATTCAGTTCCACTTCCTCGTGAGTTTTCTTTCTGCAGGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATC</genome_strand>
        <mrna_strand>CACCTGCCTTTTGACCTTTCTGTTCGTATACACCGAGAGTGTGATGACTTCAGTGAAGAGCTGGTGAGTCAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAC..........................................................................................ATCTTTAATCCTCTGACATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAATAAGCCCCTTGAATGCTTGACTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAACAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG.......................................................................................TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCCAGCATG................................................................................GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAACAAAAGGCTTGGATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299622" ref_strand="+" ref_description="SGN-E299622 [cLEW-20-K22]">
      <seq>aagaagagggggtactgtttccaatttgaaagcagttgtagatgtagacaaaagagtggagagctatggcagtagtgatgtagaaggaaatgagagtggcagctatgatgccattgttataggttcaggaataggtggattggtggcagcgacgcagctggcggttaagggagctaaggttttagttctggagaagtatgttattcctggtggaagctctggcttttacgagagggatggttataagtttgatgttggttcatcagtgatgtttggattcagtgataagggaaacctcaatttaattactcaagcattggcagcagtaggacgtaaattagaagttatacctgacccaacaactgtacatttccacctgccaaatgacctttctgttcgtatacaccgagagtatgatgacttcattgaagagcttgtgagtaaatttccacatgaaaaggaagggattatcaaattttacagtgaatgctggaagatctttaattctctgaattcattggaactgaagtcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="70851" stop="69200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70551" g_stop="70263" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69834" g_stop="69628" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="496" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90">
            <donor d_prob="0.357" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69537" g_stop="69500" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="534" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E299622" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299622" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70551" e_stop="70263"/>
          <exon e_start="69834" e_stop="69628"/>
          <exon e_start="69537" e_stop="69500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAGGTTAGTTGTCTAAATACTTGCTTTCTGTTATTTAGGACATAACACAGAATACTTGCTTTATTTAGACAGAAAGCAAGTATTTAGACAAGTACACTAAATATCACGAATCGATCAACAAGTACACAACACACACCGCTCCATAGTCTGAAAGTGTGGAAGTGATTATGTTTTCATTCAAGAATGCATCCAAATATTACGTATAATGACTACATCTTTAACAATTTTTTTTAATCAAGTATGGTTTTCATTGATAATAACAAGGCCAACTTGGTCATATACAAGAGATATACCAAAAAGGTCATTAACATAGTTTATACTGGCCATGGTGTATGCTTTTTACTATTGTATATGGTCTGCAGTGCTTCCACGTGATTGGACTACTGTTGTTCCTGGTTAGATTTAAACTAATGTCTCACATCTTTTGACAGGGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAGGTTTGTCTTCATTAAGGTGTCTGCAGGTTTGGCTTAAATTTTGGACTCCTTGATTTAGACTCAAATCATATGATGAATATGGATGCACAGATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTT</genome_strand>
        <mrna_strand>AAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG..........................................................................................ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E739636" ref_strand="+" ref_description="SGN-E739636 [LC18BA07]">
      <seq>caagggaagaacccttcacttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaatattctctgcttttgcagttgcagaggtaaagagttgtcaagattccatttttgtagtttattgtgtttgtaatcttgggtttccagcaatttaaagaaaaaaagattcaatctttttaatttatcagtattttggcagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaatagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgagaattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggacaaggctaagggaagaagagggggtactgtttccaatttgaaagcagttgtagatgtagacaaaagagtggagagctatggcagtagtgatgtagaaggaaatgagagtggcagctatgatgccattgttataggttcaggaataggtggattggtggcagcgacgcagctggcggttaagggagctaaggttttagttctggagaagtatgttattcctgggtggaagctctggcttttacgagagggatggttataagtttgatgttggttcatcagtgatgtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71462" stop="69975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71162" g_stop="70275" g_length="888"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="887" r_length="887" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E739636" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71162" e_stop="70275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCT-GGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGA</genome_strand>
        <mrna_strand>CAAGGGAAGAACCCTTCAC-TTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATATTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAAT-AGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGAGAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698516" ref_strand="+" ref_description="SGN-E698516 [FA06CE02]">
      <seq>gaatcttggaatttgaacaatttaaagccccaagattcaagtttttagaatattctctgcttttgcagttgcagagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaatagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgagaattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggacaaggctaagggaagaagagggggtactgtttccaatttgaaagcagttgtagatgtagacaaaagagtggagagctatggcagtagtgatgtacaaggaaatgagagtggcagctatgatgccattgttataggttcaggaataggtggattggtggcagcgacgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71330" stop="70095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71031" g_stop="70956" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70955" i_stop="70837" i_length="119">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70836" g_stop="70395" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="517" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E698516" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71031" e_stop="70956"/>
          <exon e_start="70836" e_stop="70395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAG</genome_strand>
        <mrna_strand>GAATCTTGGAATTTGAACAATTTAAAGCCCCAAGATTCAAGTTTTTAGAATATTCTCTGCTTTTGCAGTTGCAGAG.......................................................................................................................AAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAAT-AGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGAGAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTACAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316213" ref_strand="+" ref_description="SGN-E316213 [cTOA-23-E16]">
      <seq>tcatgccaatccacttctctttccatttcaagcactacaaacaagggaagaacccttcactttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaattttctctgcttttgcagttgcagagtattttggcagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaataagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgataattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggacaaggctaagggaagaagagggggtactgtttccaatttgaaagcagttgtagatgtagacaaaagagtggagagctatggcagtagtgatgtagaaggaaatgagagtggcagctatgatgccattgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71503" stop="70132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71203" g_stop="70956" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70955" i_stop="70854" i_length="102">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70853" g_stop="70432" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="670" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E316213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71203" e_stop="70956"/>
          <exon e_start="70853" e_stop="70432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTAT</genome_strand>
        <mrna_strand>TCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG......................................................................................................TATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331404" ref_strand="+" ref_description="SGN-E331404 [cTOD-9-J11]">
      <seq>cttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaattttctctgcttttgcagttgcagaggtaaagagttgtcaagattccatttttgtagtttattgtgtttgtaatcttgggtttccagcaatttaaagaaaaaaagattcaatctttttaatttatcagtattttggcagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaataagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgataattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71406" stop="70262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71106" g_stop="70562" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E331404" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71106" e_stop="70562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACA</genome_strand>
        <mrna_strand>CTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330632" ref_strand="+" ref_description="SGN-E330632 [cTOD-8-D18]">
      <seq>catgccaatccacttctctttccatttcaagcactacaaacaagggaagaacccttcactttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaattttctctgcttttgcagttgcagagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaataagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgataattggaaattgtactgatcagcagcagctttgtggcttgagttggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71502" stop="70269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71202" g_stop="70956" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70955" i_stop="70843" i_length="113">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70842" g_stop="70569" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="521" r_length="274" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E330632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71202" e_stop="70956"/>
          <exon e_start="70842" e_stop="70569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGG</genome_strand>
        <mrna_strand>CATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG.................................................................................................................CTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E356453" ref_strand="+" ref_description="SGN-E356453 [cLHT-20-K10]">
      <seq>aaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagagttgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttacaattctctctgcttttgcagttgcagaggtaaagagttgtcaagattgcatttttctagtttatggtgtttgtaatcttgggttttcagcaatttaaagaaaaaaagattcaatctttttaatttatcagtattttggcagctgcagaagtaaagaattggatagcttgaaagccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaatagagaaatgtgtaccttgagttgtatgtttcctaattcacttcttgatggtacctgcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71422" stop="70386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71122" g_stop="70686" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E356453" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71122" e_stop="70686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAG</genome_strand>
        <mrna_strand>AAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAGTTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTACAATTCTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTGCATTTTTCTAGTTTATGGTGTTTGTAATCTTGGGTTTTCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAAGCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAAT-AGAGAAATGTGTACCTTGAGTTGTATGTTTCCTAATTCACTTCTTGATGGTACCTGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331629" ref_strand="+" ref_description="SGN-E331629 [cTOD-7-K1]">
      <seq>aagaacccttcactttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaattttctctgcttttgcagttgcagaggtaaagagttgtcaagattccatttttgtagtttattgtgtttgtaatcttgggtttccagcaatttaaagaaaaaaagattcaatctttttaatttatcagtattttggcagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaataagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71456" stop="70398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71156" g_stop="70698" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E331629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71156" e_stop="70698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGAT</genome_strand>
        <mrna_strand>AAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243283" ref_strand="+" ref_description="SGN-E243283 [cLEF-12-N13]">
      <seq>ttgggttagctttgtgcttacaaaagaagcgccaaacaatttggatccacatggctatacgcaattaactgtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71603" stop="74575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71903" g_stop="72043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="224" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74275" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="439" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E243283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71903" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGA</genome_strand>
        <mrna_strand>TTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303752" ref_strand="+" ref_description="SGN-E303752 [cLEX-4-O17]">
      <seq>cgccaaacaatttggatccacatggctatacgcaattaactgtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcatcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctgtccaagcgcttgaaagaacgtgggctggatgtcaaaataatttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71632" stop="75118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71932" g_stop="72043" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="195" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="495" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="597" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74818" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="619" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E303752" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71932" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACA</genome_strand>
        <mrna_strand>CGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCATCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTGTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263321" ref_strand="+" ref_description="SGN-E263321 [cLEG-62-I22]">
      <seq>ttggatccacatggctatacgcaattaactgtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtgggagggatggatctagatatcttaccacaaagtgctggcaaaggacaagcacttgcatatctgcttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71643" stop="75189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71943" g_stop="72043" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="184" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="484" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="586" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74889" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="680" r_length="94" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E263321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71943" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGT-GGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAG</genome_strand>
        <mrna_strand>TTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGGAGGGATGGATCTAGATATCTTACCACAAAGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E747095" ref_strand="+" ref_description="SGN-E747095 [GI|28190686]">
      <seq>tgtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcagagaggtgtgctgccggtatcatacaagccattggtcatttcaacctaggtccaagtacctccccaagagatgttacagatttatcagattgcaagatggacaactttgttcctgcctatgaagttgtcaaattttacctgttttttgagaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgccttttttgtgtagtataaagaattatattaatatctatagttcttctatttgattcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71672" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71972" g_stop="72043" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="155" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="455" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="557" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="752" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75090" g_stop="75380" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="1043" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1044" r_stop="1230" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1231" r_stop="1277" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="77531" g_stop="77850" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1278" r_stop="1597" r_length="320" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1598" polyA_stop="1611"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E747095" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1597</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71972" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAA</genome_strand>
        <mrna_strand>TGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E332693" ref_strand="+" ref_description="SGN-E332693 [cTOD-18-C19]">
      <seq>gtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcangaggaattactgcagtggcatgctgcaaatgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71673" stop="75440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71973" g_stop="72043" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="154" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="454" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="556" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="751" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75090" g_stop="75140" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="802" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E332693" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71973" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAA</genome_strand>
        <mrna_strand>GTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCANGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729169" ref_strand="+" ref_description="SGN-E729169 [LA20AG12]">
      <seq>gtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgagggctggatgtcacaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttcgctatttgcttaagaaacagaagagcgagggagaattaccaagcaacacccttgcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71673" stop="75233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71973" g_stop="72043" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="154" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="454" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="556" r_length="102" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74933" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="693" r_length="137" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E729169" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71973" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTG</genome_strand>
        <mrna_strand>GTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGAGGG......................................................................................................................................................................CTGGATGTCACAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTCGCTATTTGCTTAAGAAACAGAAGAGCGAGGGAGAATTACCAAGCAACACCCTTGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E366351" ref_strand="+" ref_description="SGN-E366351 [cLPT-1-I7]">
      <seq>ttttgcctatttgcgatctctttacacgcaaaagattcatttttttgtttccccaaatcccatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctctctctgcttaggttcaatgctttatgggaggccaattatcgtggtaactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaacttagtctgcagtcagaaacagagcagcgaccacacaaggtcagtttctatgtcaagaaagagaaagctcaaggtataatgaaaactctttccaagcgcttggaagaacgtgggctggatgtcaaaataatttacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71676" stop="75120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71976" g_stop="72043" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="151" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="451" r_length="300" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.912" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="553" r_length="102" r_score="0.951"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74820" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="577" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E366351" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71976" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGT</genome_strand>
        <mrna_strand>TTTTGCCTATTTGCGATCTCTTTACACGCAAAAGATTCATTTTTTTGTTTCCCCAAATCCCATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTCTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGGTAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTTAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAGGTCAGTTTCTATGTCAAGAAAGAGAAAGCTCAAGGTATAATGAAAACTCTTTCCAAGCGCTTGGAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365822" ref_strand="+" ref_description="SGN-E365822 [cLPT-8-I2]">
      <seq>ttttgcctatttgcgatctctttacacgcaaaagattcatttttttgtttccccaaatcccatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctctctctgcttaggttcaatgctttatgggaggccaattatcgtggtaactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71676" stop="74596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71976" g_stop="72043" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="151" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74296" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="387" r_length="236" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E365822" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71976" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAA</genome_strand>
        <mrna_strand>TTTTGCCTATTTGCGATCTCTTTACACGCAAAAGATTCATTTTTTTGTTTCCCCAAATCCCATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTCTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGGTAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703697" ref_strand="+" ref_description="SGN-E703697 [FA22AH06]">
      <seq>gatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggtaacccttttgctccctctttacatttttgtacatttctggtgattaatttgtatctcgactaatttgtactttgaaggaacccttttgaaaactatattgtgggaatagagaaaagattagtttttttatatgtatgaagtgttgaatccctttgttatagtgaagtggcaaaagggtgttcaagattatgttagatcataggttaaaattttaggtgtaatgggccatatgtgttagtattagatttgctgctgaggattaactaatctgttcaacctgtattgggatttgaagtaagaatgcggttctgagtagaatctgattgtctctgtataaatttgtgtatactgaggaagatgtgaggatgaacttgattgaattttggtgttgggttgagttgatttggattttctttggtgattttgggtaaaaaatgttattttgattgattcaggactctagacctagatcccttttcgtggggtttcttttattcgtgaagacttgatgagtagttattgaatttaggagtagtaatccaagaattggctttggaatgaaaaatggaagttctcgacatcccattttacagtcccctttttcttgatcctgtatttgggtttcagagtttaaggatataacctaacttgtcttaaatttttcgcatttactgtactgtacacaacagataagatgacagatctcctctgtagagaatttggtactttaacatgctagtttgtgaatctgttaaatacttgtcaaatttaagcttgttcaagtaatatttatctttaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71690" stop="73137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71990" g_stop="72837" g_length="848"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="859" r_length="859" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E703697" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71990" e_stop="72837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTG-----CGTGT-ATCTCGAC--T-AATT--TGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</genome_strand>
        <mrna_strand>GATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGTATCTCGACTAATTTGTACTTTGAAGGAACCCTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATGTGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTACACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E270025" ref_strand="+" ref_description="SGN-E270025 [cLEM-7-N16]">
      <seq>aaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="73890" stop="75464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74190" g_stop="74360" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="273" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="468" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75090" g_stop="75164" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="543" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E270025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74190" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCA</genome_strand>
        <mrna_strand>AAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E245106" ref_strand="+" ref_description="SGN-E245106 [cLEF-13-P9]">
      <seq>aacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="73998" stop="75464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74298" g_stop="74360" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="165" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="360" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75090" g_stop="75164" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="435" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E245106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74298" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCA</genome_strand>
        <mrna_strand>AACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271318" ref_strand="+" ref_description="SGN-E271318 [cLEM-5-J12]">
      <seq>atctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcagagaggtgtgctgccggtatcatacaagccattggtcatttcaacctaggtccaagtacctccccaagagatgttacagatttatcagattgcaagatggacaactttgttcctgcctatgaagttgtcaaattttacctgttttttgagaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="74531" stop="76208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74831" g_stop="74991" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75090" g_stop="75380" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="452" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75860" g_stop="75908" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="501" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E271318" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74831" e_stop="74991"/>
          <exon e_start="75090" e_stop="75380"/>
          <exon e_start="75860" e_stop="75908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTC</genome_strand>
        <mrna_strand>ATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E699408" ref_strand="+" ref_description="SGN-E699408 [FA09DH01]">
      <seq>cggtaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcagagaggtgtgctgccggtatcatacaagccattggtcatttcaacctaggtccaagtacctccccaagagatgttacagatttatcagattgcaagatggacaactttgttcctgcctatgaagttgtcaaattttacctgttttttgagaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgcgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgatgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="74604" stop="78069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74903" g_stop="74991" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75090" g_stop="75380" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="380" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="567" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="614" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77531" g_stop="77769" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="853" r_length="239" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E699408" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74903" e_stop="74991"/>
          <exon e_start="75090" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTA</genome_strand>
        <mrna_strand>CGGTAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGCGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGATGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267796" ref_strand="+" ref_description="SGN-E267796 [cLEI-12-N14]">
      <seq>tccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcagagaggtgtgctgccggtatcatacaagccattggtcatttcaacctaggtccaagtacctccccaagagatgttacagatttatcagattgcaagatggacaactttgttcctgcctatgaagttgtcaaattttacctgttttttgagaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="74641" stop="76295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74941" g_stop="74991" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75090" g_stop="75380" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="342" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75860" g_stop="75995" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="478" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E267796" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74941" e_stop="74991"/>
          <exon e_start="75090" e_stop="75380"/>
          <exon e_start="75860" e_stop="75995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCAC</genome_strand>
        <mrna_strand>TCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E350935" ref_strand="+" ref_description="SGN-E350935 [cTOS-7-B24]">
      <seq>agaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgccttttttgtgtagtataaagaattatattaatatctatagttcttctatttgattcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="75016" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75316" g_stop="75380" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="252" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="299" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77531" g_stop="77858" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="627" r_length="328" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E350935" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75316" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAGTCAAGAT</genome_strand>
        <mrna_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352756" ref_strand="+" ref_description="SGN-E352756 [cTOS-11-H4]">
      <seq>agaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgccctttttgtgtagtataaagaattatattaatatctatagntcttctatttgattcagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="75016" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75316" g_stop="75380" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="252" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="299" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77531" g_stop="77856" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="625" r_length="326" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E352756" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75316" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAGTCAAG</genome_strand>
        <mrna_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCCTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGNTCTTCTATTTGATTCAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352886" ref_strand="+" ref_description="SGN-E352886 [cTOS-11-H3]">
      <seq>agaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacnatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="75016" stop="78090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75316" g_stop="75380" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="252" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="299" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77531" g_stop="77790" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="559" r_length="260" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E352886" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75316" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGC</genome_strand>
        <mrna_strand>AGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACNATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342392" ref_strand="+" ref_description="SGN-E342392 [cTOF-8-A3]">
      <seq>tcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgccttttttgtgtagtataaagaattatattaatatctatagttcttctatttgattcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="75060" stop="78150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75360" g_stop="75380" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="208" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="255" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77531" g_stop="77858" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="583" r_length="328" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E342392" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75360" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAGTCAAGAT</genome_strand>
        <mrna_strand>TCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254048" ref_strand="+" ref_description="SGN-E254048 [cLEG-34-K8]">
      <seq>aaccatacacgaaattatctgtttcttatcctactaaacttctagagcatacaccaaatccactgttaagctcatacaaaacctcttcaagcttcaactgtggataatgatagttgaagcatagagagtcgagcatagtaatgagtcaagcatttagctttttcagttgagcttgtgtgaggtttaggtgcccctgatcattggattacagtgcctacacagctttggtctgataagaaagtctaacctcaatagtcttaccaccgaatacgctccctatttcctatctgatttcaccgcaggtagtcaagtttaggtaaactatcatgcgtattcctgcttttgatgggatgtgagatgagttcatgtaatgtagcttctgatatttcatgccgttactcctttcataaggtcgttaatggtcggtctgtactggatcagcacagtagcggagcagctcctgcatgcctttacctgcaacaaatggacttaactgttagtctctgaaggaaaaagggggctgtcaataaataaccatcaatttgttgcaagcaggataattaatgcttatgcaacacttgcattttcgatctcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="76456" stop="77654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76756" g_stop="77354" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E254048" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76756" e_stop="77354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATT</genome_strand>
        <mrna_strand>AACCATACACGAAATTATCTGTTTCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAATAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374318" ref_strand="-" ref_description="SGN-E374318 [TUS-33-N18](-)">
      <seq>ccattatctttctttttaataaattaaaaagaaagacaatggcatcttttaacaaaattattattgtatttaccatttctttattctttacaacaattccttctaaggcatataatattcaacctaaaccccatgcaccttcccatgcaccaattaaaccatcctcatcctcgtcctcgtcctcgtatattgaaattccgacaaatatacctatcgtcccaaatactagagatgtatccgtatttatcaactcgatgatggaagcaacgatgggaaagacagaagaatttatcgcgaatgtgattgaacagcgtctagaggaacctgatactgacatatacgcgacggattgtctagagacatgtaaatcagtgtatcaagatgctgtagatgcaatgaagaaagctgaagaagatgtgaaatcaaaagaatattataaagcagatttggatattagtgcaataacaacagatattgatacttgcaatgaatgtgctgtttcaatatatggagaggatactgaatttaggcaatttgataattggattcaaggggttgctactgagtgccttgataaaattagtgccttgactaaataaattttgataaatgttgttttgatattaaatatggaaagatttggtgatgaaatctttgtacaaccaaaatattttangttaacaaaaggaacaacacactatatgatagtgtttgatcttttaaaaaaaaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="80651" stop="79316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80351" g_stop="79617" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="748"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-E374318" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374318" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80351" e_stop="79617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTATCTTTCTTTTTTATTTATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCGTCCTCTAAGGCAACTATTGAAATTCCGAAAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGTGAATGTGATTGAACAACGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTAACTAAATAAA-TTTGATAAATATGTTGTTTTGAGATTAAATATGGAAAGACTTGGTGATGAAATCTTGTAACAACCAAAATATTTTAGGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATCTTTCA</genome_strand>
        <mrna_strand>CCATTATCTTTCTTTTTAATAAATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCG-----T------A-TATTGAAATTCCGACAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGCGAATGTGATTGAACAGCGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTGACTAAATAAATTTTGAT-AA-ATGTTGTTTTGATATTAAATATGGAAAGATTTGGTGATGAAATCTTTGTACAACCAAAATATTTTANGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATCTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545291" ref_strand="+" ref_description="SGN-E545291 [TUS-68-B1]">
      <seq>gagagagaggcgactagttcgagttttttatttttttttttcaattcaaaatttgaaatgaaagcaactttttttcaacctctatttaaaattcaacttccccactccactctctccagatctaaatctcaatatctctctcttccatggcgattcgaactatctacggattgatattcttagcaacatccagcttttgcttcatcttcctctatctcgctcttcaaccaatcttctatttcacctcctaacaccgccggcggtgccactatgaaccgaccgatatggtggaccggtagcagagtcgatgaagaacaatttttttttccttccacggcggcgacgcgaaattccggcagatcggttcgtagatgaatacaagtatgttgaatgtatacttttgttttcattttagtttagaacggaaaaatcacagtgatatttggtttttgttttgacggatctggatttgatatttttgtgatttcgtttgtttcagcttgaaatttgttgttaatcatagagatttataattttgcgaaaattaatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="87091" stop="88218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87391" g_stop="87918" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="554" r_length="527" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E545291" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87391" e_stop="87918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTTTTTTTCAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTT</genome_strand>
        <mrna_strand>TTATTTTTTTTTTTCAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGTTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAA-TTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311611" ref_strand="+" ref_description="SGN-E311611 [cLEZ-9-I21]">
      <seq>agaggcgactagttcgagttttttatttttttttttcaattcaaaatttgaaatgaaagcaactttttttcaacctctatttaaaattcaacttccccactccactctctccagatctaaatctcaatatctctctcttccatggcgattcgaactatctacggattgatattcttagcaacatccagcttttgcttcatcttcctctatctcgctcttcaaccaatcttctatttcacctcctaacaccgccggcggtgccactatgaaccgaccgatatggtggaccggtagcagagtcgatgaagaacaatttttttttccttccacggcggcgacgcgaaattccggcagatcggttcgtagatgaatacaagtatgttgaatgtatacttttgttttcattttagtttagaacggaaaaatcacagtgatatttggtttttgttttgacggatctggatttgatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="87091" stop="88143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87391" g_stop="87843" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="475" r_length="453" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E311611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87391" e_stop="87843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTTTTTTTTTCAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTT</genome_strand>
        <mrna_strand>TTATTTTTTTTTTTCAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGTTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E545290" ref_strand="+" ref_description="SGN-E545290 [TUS-68-B1](-)">
      <seq>tctctccagatctaaatctccatatctctctcttccaaggcgattcgaactatctacggattgatattcttagcaacatccagcttttgcttcatcttcctctatctcgctcttcaaccaatcttctatttcacctcctaacaccgccggcggtgccactatgaaccgaccgatatggtggaccggtagcagagtcgatgaagaacaatttttttttccttccacggcggcgacgcgaaattccggcagatcggttcgtagatgaatacaagtatgttgaatgtatacttttgttttcattttagtttagaacggaaaaatcacagtgatatttggtttttgttttgacggatctggatttgatatttttgtgatttcgtttgtttcagcttgaaattttgttgttaatcatagagatttataattttgcgaaaattaatttcttcgaacgattatgaatttatgattcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="87174" stop="88244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87474" g_stop="87939" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="466" r_length="466" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="484"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E545290" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87474" e_stop="87939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTTCGAACGATTATGAATTTATGA</genome_strand>
        <mrna_strand>TCTCTCCAGATCTAAATCTCCATATCTCTCTCTTCCAAGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGTTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTTCGAACGATTATGAATTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E365034" ref_strand="+" ref_description="SGN-E365034 [cLPP-17-H2]">
      <seq>ttaattctccagctattttcggagaggggtaatttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94577" stop="95494"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94877" g_stop="95194" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E365034" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94877" e_stop="95194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTCCAGCT-TTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGG</genome_strand>
        <mrna_strand>TTAATTCTCCAGCTATTTTCGGAGAGGGGTAATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363835" ref_strand="+" ref_description="SGN-E363835 [cLPP-3-L2]">
      <seq>cagctattttcggagaggggtaatttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94586" stop="95646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94886" g_stop="95346" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E363835" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94886" e_stop="95346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCT-TTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAA</genome_strand>
        <mrna_strand>CAGCTATTTTCGGAGAGGGGTAATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E547769" ref_strand="+" ref_description="SGN-E547769 [TUS-71-N4]">
      <seq>atttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgcttaccagatttctagtccgattgcgatggtcggcgccggcgccggaaacctagcaaccgataaggatgctttggagctggagaaggaaatgtgggataagttttacggtactgggttctggagaagcccatctcaacgaagtgaaatgtaacggcttgggatgaattaatgtgtataggtggttggaatgaagaanaagggagaaattgntctattttctttcttttttatattttaaactctctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94607" stop="96319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94907" g_stop="95561" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95953" g_stop="96046" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="748" r_length="95" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E547769" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94907" e_stop="95561"/>
          <exon e_start="95953" e_stop="96046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACGGTAATTTATACGATTAATTTATAAAATAAGTTAATTCTATATATCAAAAATCAAAATTAGACTTTCAATTTATCATAATAATAATAGAGTGTTAAATAGTCACTCATTATGCTATTATCGAACTAAATTTATGATGAATTTCGGAAAATAAAGTGAAAACGCAACATCCTTTATCCATTACTTCGAAATCTTTCGTAAATTCATATCAATTCCTCTTTGTAGCTCGTAAAATGAATTAATTTCATAAATTCCATAATATTGGTATTTCATCATGCTTGTTTTAGGTAATTTTTTTAATTTATAAATATTATTTATCTTGTAAAATTAATCGAGGTATAATTTGCGATTATTATGATTATAATCAATTGTGTATGTTTGTTGTAATTTTCAGGCTTGGGATGAATTAATGTGTATAGGTGGTT-GAATGAAGAAG-AGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTG</genome_strand>
        <mrna_strand>ATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTAAAAATAAAA--AATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGAAGCCCATCTCAACGAAGTGAAATGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGATGAATTAATGTGTATAGGTGGTTGGAATGAAGAANAAGGGAGAAATTGNTCTATTTTCTTT-CTTTTTTATATTTTAAACTCTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363376" ref_strand="+" ref_description="SGN-E363376 [cLPP-4-L24]">
      <seq>atttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94607" stop="95711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94907" g_stop="95411" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E363376" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94907" e_stop="95411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTA</genome_strand>
        <mrna_strand>ATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTAAAAATAAAA--AATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364671" ref_strand="+" ref_description="SGN-E364671 [cLPP-18-L11]">
      <seq>tttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94608" stop="95711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94908" g_stop="95411" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E364671" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94908" e_stop="95411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTA</genome_strand>
        <mrna_strand>TTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E364548" ref_strand="+" ref_description="SGN-E364548 [cLPP-18-N7]">
      <seq>tttttttccattgtgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtatcatcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggatgtcgccggcggttcgactgcggaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94608" stop="95524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94908" g_stop="95224" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E364548" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94908" e_stop="95224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTG</genome_strand>
        <mrna_strand>TTTTTTTCCATTGTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTATCATCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGATGTCGCCGGCGGTTCGACTGCGGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549590" ref_strand="+" ref_description="SGN-E549590 [TUS-71-N4](-)">
      <seq>aatcgaatttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgcttaccagatttctagtccgattgcgatggtcggcgccggcgccggaaacctagcaaccgataaggatgctttggagctggagaaggaaatgtgggataagttttacggtactgggttctggagaagcccatctcaacgaagtgaaatgtaacggcttgggatgaattaatgtgtataggtggttgaatgaagaagagggagaaattgttctattttctttcttttttaatattttaaactctctttgtaattaaaaactcttttaaactcttgtatccaccaaagcaatctttgtattatattcttcaatttctttgtcatattttcatttcaagaatcaaaatcaaagtatattgttcatttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94675" stop="96454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94975" g_stop="95561" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95953" g_stop="96135" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="778" r_length="194" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="797" polyA_stop="810"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E549590" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94975" e_stop="95561"/>
          <exon e_start="95953" e_stop="96135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACGGTAATTTATACGATTAATTTATAAAATAAGTTAATTCTATATATCAAAAATCAAAATTAGACTTTCAATTTATCATAATAATAATAGAGTGTTAAATAGTCACTCATTATGCTATTATCGAACTAAATTTATGATGAATTTCGGAAAATAAAGTGAAAACGCAACATCCTTTATCCATTACTTCGAAATCTTTCGTAAATTCATATCAATTCCTCTTTGTAGCTCGTAAAATGAATTAATTTCATAAATTCCATAATATTGGTATTTCATCATGCTTGTTTTAGGTAATTTTTTTAATTTATAAATATTATTTATCTTGTAAAATTAATCGAGGTATAATTTGCGATTATTATGATTATAATCAATTGTGTATGTTTGTTGTAATTTTCAGGCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATT---AA-------AAACTCTTGTATCCACC-AAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATCAA</genome_strand>
        <mrna_strand>AATCGAA-TTTTTCGAAAAAAATTAAAATTAAAAATTTT--AAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGAAGCCCATCTCAACGAAGTGAAATGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAATTGTTCTATTTTCTTTCTTTTTTAATATTTTAAACTCTCTTTGTAATTAAAAACTCTTTTAAACTCTTGTATCCACCAAAGCAATCTTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E363077" ref_strand="+" ref_description="SGN-E363077 [cLPP-2-L16]">
      <seq>tcttctctaatttctaggttcctcaaaggggccttatcgggtcaacaattaattttcttcttcatccaatttccggagcctttttctaaattcatatcatgtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaacgaggaattcaagatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgctaaagcgatcctccctcggttactagctgcaagcatgaatttcatctgcagtgcgtcctgcaatggtgtcagataagttctaattgtcctatgtgttggcagtccatatgtctgatagatcagatgagttgacttccctctttcagtcaagaattgttcgaggctgtggaacaagaaaggaattttagagttaatgcataaagaaatgctacagtatttcaacttactgcgctgggagattttgaactacagcatttacctgtggatattgatgatcctgaactagaagagcgcattcttcaacatttggctgttgctgcttcaatgggaagagctcaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108742" stop="112620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109042" g_stop="109142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="251" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="298" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.91"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="361" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="111993" i_length="77">
            <donor d_prob="0.560" d_score="0.96"/>
            <acceptor a_prob="0.181" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111994" g_stop="112120" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="488" r_length="127" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112321" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="578" r_length="90" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E363077" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109042" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="111994" e_stop="112120"/>
          <exon e_start="112232" e_stop="112321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCG</genome_strand>
        <mrna_strand>TCTTCTCTAATTTCTAGGTTCCTCAAAGGGGCCTTATCGGGTCAAC-AATTAATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAACGAGGAATTCAAGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCTAAAGCGATCCTCCCTCG..............................................................................................................GTTACTAGCTGCAAGCATGAATTTCATCTGCAGTGCGTCCTGCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGATAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATATGTCTGATAGATCAGATGAG.............................................................................TTGACTTCCCTCTTTCAGTCAAGAATTGTTCGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCATAAAGAAATGCTACAGTATTTCAACTTACTGCGCTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTAGAAGAGCGCATTCTTCAACATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346123" ref_strand="+" ref_description="SGN-E346123 [cTOF-34-K3]">
      <seq>tcgaatttctaggttcctgaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtgaatgctaaagactgcctgtagttaaatgtttgatatttgtaatgttatgtactctattaccatagtgactttgatagtgtgtatatatctgtttttttcttctgtaggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108747" stop="112562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109047" g_stop="109142" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109915" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="404" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="467" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="576" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112232" g_stop="112262" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="577" r_stop="607" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E346123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109047" e_stop="109142"/>
          <exon e_start="109608" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTG</genome_strand>
        <mrna_strand>TCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E315816" ref_strand="+" ref_description="SGN-E315816 [cTOA-26-J20]">
      <seq>ttcctgaaaggggccttatcggttcacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108760" stop="112784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109060" g_stop="109142" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="233" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="280" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="343" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="452" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112484" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="705" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E315816" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109060" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTC</genome_strand>
        <mrna_strand>TTCCTGAAAGGGGCCTTATCGGTTC-ACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E314944" ref_strand="+" ref_description="SGN-E314944 [cTOA-31-E13]">
      <seq>tgaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108764" stop="112557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109064" g_stop="109142" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="230" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="277" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="340" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="449" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112257" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="475" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E314944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109064" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGA</genome_strand>
        <mrna_strand>TGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297100" ref_strand="+" ref_description="SGN-E297100 [cLEW-2-C23]">
      <seq>gaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108765" stop="112574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109065" g_stop="109142" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="229" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="276" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="448" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112274" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="491" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E297100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109065" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTC</genome_strand>
        <mrna_strand>GAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300771" ref_strand="+" ref_description="SGN-E300771 [cLEW-8-E19]">
      <seq>gaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattctcttctttcatctgatttctgagtttcacaagctagcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108765" stop="112491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109065" g_stop="109142" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="229" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="276" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112191" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="519" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E300771" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109065" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGT</genome_strand>
        <mrna_strand>GAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTCTCTTCTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324207" ref_strand="+" ref_description="SGN-E324207 [cTOC-4-L24]">
      <seq>ggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108771" stop="112615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109071" g_stop="109142" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="223" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="270" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="333" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="442" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112315" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="526" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E324207" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109071" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCAC</genome_strand>
        <mrna_strand>GGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359607" ref_strand="+" ref_description="SGN-E359607 [cLPP-5-B3]">
      <seq>gcttatcggttcaacaattaattttcttcttcatccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaagatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgaatttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108774" stop="112206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109073" g_stop="109142" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="220" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="267" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111906" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="320" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E359607" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109073" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAG</genome_strand>
        <mrna_strand>GCTTATCGGTTCAAC-AATTAATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAAGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAATTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E549527" ref_strand="+" ref_description="SGN-E549527 [TUS-71-D21]">
      <seq>atcggttcaacaattaattttcttcttcatccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgaatttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcgctgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaagggagggctcaagaaatcgctcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctagtggatcaatttctgatcctgctgncacacaacagttgattccccctctcccattagctccggtagcagtgattcaccacgacagatgcctcaccttccatcagttcaaagtgatcaactttctgctttatcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108777" stop="112871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109077" g_stop="109142" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="216" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="263" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="326" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="435" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112571" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="774" r_length="339" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E549527" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109077" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTG</genome_strand>
        <mrna_strand>ATCGGTTCAAC-AATTAATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAATTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCGCTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGCTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTAGTGGATCAATTTCTGATCCTGCTGNCA-CACAACAGTTGATTCCCCCTCTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTCACCTTCCATCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250196" ref_strand="+" ref_description="SGN-E250196 [cLEG-11-N19]">
      <seq>aacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactatctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctctatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108785" stop="112605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109085" g_stop="109142" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="209" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="256" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="319" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112305" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="613" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E250196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109085" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGG</genome_strand>
        <mrna_strand>AACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTATCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550880" ref_strand="+" ref_description="SGN-E550880 [TUS-54-C7]">
      <seq>aacaaattaattttcttcttaaccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatccagggtcatatgacatcccctgcaacttttgtgaaaggaggaattcaggatgcatgtgatgatgcttgcatcatttgtctcgaggatttctgcaaaagcgagcctccctcggtaactagctgcaagcatgagtttcatctccagagcgtcctggaatggtgacagagaacttctaattgtcctatgtgttgacagtccataagtctgaaagatcagatgagtcaagaattgtttgaagctgtggaacaacaaaggaattttatagttaatgcacaaagaaatgctaccgtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattttcgtttttcatctgatttctgagtttcacaagctagcatgttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108785" stop="112495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109085" g_stop="109142" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="207" r_length="150" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="254" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="317" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112195" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="501" r_length="184" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E550880" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E550880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109085" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTG</genome_strand>
        <mrna_strand>AACAAATTAATTTTCTTCTT-AACCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATC-CAGGGTCATATGACATCCCCTGCAACTTTTGTGAAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCATCATTTGTCTCGAGGATTTCTGCAAAAGCGAGCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGAGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACAGAGAACTTCTAATTGTCCTATGTGTTGACAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAAGCTGTGGAACAACAAAGGAATTTTATAGTTAATGCACAAAGAAATGCTACCGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCGTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E361765" ref_strand="+" ref_description="SGN-E361765 [cLPP-12-E3]">
      <seq>attttcttcttcatccaatttccggagcctttttctaaattcatatcaagtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcangatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgaatttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108794" stop="112387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109094" g_stop="109142" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="200" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="247" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="310" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112087" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="386" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E361765" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109094" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAG</genome_strand>
        <mrna_strand>ATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCANGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAATTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257819" ref_strand="+" ref_description="SGN-E257819 [cLEG-39-E2]">
      <seq>gtttttgggaatggatgatgtcaacaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcangatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcancatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="109317" stop="112626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109617" g_stop="109758" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="189" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="252" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="361" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112232" g_stop="112326" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="456" r_length="95" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E257819" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109617" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCG</genome_strand>
        <mrna_strand>GTTTTTGGGAATGGATGATGTCAACAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCANGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCANCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E316285" ref_strand="+" ref_description="SGN-E316285 [cTOA-23-H20]">
      <seq>tttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctctatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcacacgacagatgccttacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="109318" stop="112830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109618" g_stop="109758" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="188" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="251" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112530" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="769" r_length="518" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E316285" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109618" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCT</genome_strand>
        <mrna_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCA-CACGACAGATGCCTTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E253663" ref_strand="+" ref_description="SGN-E253663 [cLEG-32-O20]">
      <seq>tttttgggaatggatgaggtcaagaaatcagagggtcatatgaccatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgaatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="109318" stop="112706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109618" g_stop="109758" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="190" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="253" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="362" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112232" g_stop="112406" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="537" r_length="175" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E253663" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109618" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGA-CATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATG-ATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTC</genome_strand>
        <mrna_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACCATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGAATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E256917" ref_strand="+" ref_description="SGN-E256917 [cLEG-44-I5]">
      <seq>tttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="109318" stop="112626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109618" g_stop="109758" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="188" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="251" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="360" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112232" g_stop="112326" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="455" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E256917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109618" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCG</genome_strand>
        <mrna_strand>TTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E362536" ref_strand="+" ref_description="SGN-E362536 [cLPP-1-M7]">
      <seq>cttccttcacatgtgcctgcacgggatccagtttcaccaggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaggatcagatgagtcacgaattgttcgaggctgtggaacaagaaaggaactttagagttaatgcagaaagaaatgctacattatttcactttcctgcgctgggagagtttgaactacagcatttacctgtggatattgatgaccctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaagggagggctcaagaaatcgctcatccaccaataaccgtccacaacttttagtctttccaactcatcataattcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="110821" stop="112705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111121" g_stop="111159" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111160" i_stop="111853" i_length="694">
            <donor d_prob="0.544" d_score="0.90"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="103" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="212" r_length="109" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112232" g_stop="112405" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E362536" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111121" e_stop="111159"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCCTTCACATGTGCC-GCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCT</genome_strand>
        <mrna_strand>CTTCCTTCACATGTGCCTGCACGGGATCCAGTTTCACCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAGGATCAGATGAG...............................................................................................TCACGAATTGTTCGAGGCTGTGGAACAAGAAAGGAACTTTAGAGTTAATGCAGAAAGAAATGCTACATTATTTCACTTTCCTGCGCTGGGAGAGTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGACCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGCTCATCCACCAATAACCGTCCACAACTTTTAGTCTTTCCAACTCATCATAATTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302152" ref_strand="+" ref_description="SGN-E302152 [cLEW-19-P13]">
      <seq>tgaaagatcatatgagtcaagaattgtttgaggctgtggagcaagaaaggaattttagagttaatgcataaagaaatgctacagtatttcaggttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctctatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattcttcatcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtctaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttgtgttttaccttatcctactggatcactttctgatactgctgcaatcacaacagctgattcccctattcccattaactgcggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="111704" stop="112865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111901" g_stop="111916" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112012" g_stop="112565" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="570" r_length="554" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E302152" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111901" e_stop="111916"/>
          <exon e_start="112012" e_stop="112565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTAT</genome_strand>
        <mrna_strand>TGAAAGATCATATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAGCAAGAAAGGAATTTTAGAGTTAATGCATAAAGAAATGCTACAGTATTTCAGGTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCATCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCTAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTGTGTTTTACCTTATCCTACTGGATCACTTTCTGATACTGCTGCAATCACAACAGCTGATTCCCCTATTCCCATTAACTGCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E250634" ref_strand="+" ref_description="SGN-E250634 [cLEG-7-B23]">
      <seq>gctgtggaacaagaaaggaattttagaggggatgcataaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataaccattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctatatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattctttaccatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtgcacaacttttagtatttccaactcatcataattcatctactaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcagtcacaacagttgattcccctctttccattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="111728" stop="112792"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112028" g_stop="112492" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E250634" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112028" e_stop="112492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGC</genome_strand>
        <mrna_strand>GCTGTGGAACAAGAAAGGAATTTTAGAGGGGATGCATAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAACCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTATATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTTACCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTGCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTACTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAGTCACAACAGTTGATTCCCCTCTTTCCATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727067" ref_strand="+" ref_description="SGN-E727067 [LA13CE09]">
      <seq>gtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtgtgtggctgccttaaaggataagcattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctctatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaagggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttatcatctggttccgttctaacgcctgccacagcacaaggactatctagtggtgatagaagctcttctagttcatcctttacaccaatccataggagagctggaccatcagagttgcagtcattttcagagtcctggagatctcgatttagttctatgtcaatgaaatataaagaatcgatctcaaagaatacacgagagtggaaggagagattgttttctcgaagttcttcaatgccggatgctggtcctgttangagagagtcaaatgttggaattgctagtctatctcacctgatggaacatctggaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="111731" stop="113433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112031" g_stop="112620" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.529" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112762" g_stop="112869" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="698" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112986" g_stop="113133" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="846" r_length="148" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E727067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>846</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112031" e_stop="112620"/>
          <exon e_start="112762" e_stop="112869"/>
          <exon e_start="112986" e_stop="113133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAGGTAGTTATGGTTTTCAACATCCTTCCAATTTTATGCACACCTGGGTTTTATCTTAAATTGGTTTATGATGGGTTGGATTGGAAACTCATGCAGATTTCTTAAATCAGCTCTCATTTGTTTTTGGGTTTTCTGTCTTTCTAGAAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAAGTATGAATGACTTCACTCAATTACTTTTATTCTTAATATTAGCAGTTGTACTTATTTTATATTTTTTTGGGGTCATCTTAAGCCTGGTGCGTGTTATATATGTTCTTGTGCTCCAGATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCTGGAAACT</genome_strand>
        <mrna_strand>GTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG.............................................................................................................................................AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA....................................................................................................................ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTANGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCTGGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E244775" ref_strand="+" ref_description="SGN-E244775 [cLED-38-D18]">
      <seq>ataagcattttcttttttcatctgatttctgagtttcacaagctagcatgttctgtttacctctatttattcttcattcatggcactccagttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttatcatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="111841" stop="112871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112141" g_stop="112571" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E244775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112141" e_stop="112571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTG</genome_strand>
        <mrna_strand>ATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E274458" ref_strand="+" ref_description="SGN-E274458 [cLEN-19-D11]">
      <seq>tgaacttgaagagcgcactccccagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaatggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttatcatctggttccgttctaacgcctgccacagcacaaggactatctagtggtgatagaagctcttctagttcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="111955" stop="113079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112255" g_stop="112620" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.529" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112762" g_stop="112779" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="384" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E274458" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112255" e_stop="112620"/>
          <exon e_start="112762" e_stop="112779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAGGTAGTTATGGTTTTCAACATCCTTCCAATTTTATGCACACCTGGGTTTTATCTTAAATTGGTTTATGATGGGTTGGATTGGAAACTCATGCAGATTTCTTAAATCAGCTCTCATTTGTTTTTGGGTTTTCTGTCTTTCTAGAAGCTCTTCTAGTTCATC</genome_strand>
        <mrna_strand>TGAACTTGAAGAGCGCACTCCCCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG.............................................................................................................................................AAGCTCTTCTAGTTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E209284" ref_strand="+" ref_description="SGN-E209284 [cLEC-53-F11]">
      <seq>gtcgaatggagggctcaagaaatttttcattcaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattaactccggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttatcatctggatccgttctaacgcctgccacagcacaaggactatctagcggtgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="112023" stop="112920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112323" g_stop="112620" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E209284" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112323" e_stop="112620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG</genome_strand>
        <mrna_strand>GTCGAATGGAGGGCTCAAGAAATTTTTCATTCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAACTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGATCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGCGGTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249300" ref_strand="-" ref_description="SGN-E249300 [cLEF-50-A11]">
      <seq>ctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcaccacgacagatgccttaccttccttcagttcaaagtgatcaactttctgctttatcatctggttccgttctaacgcctgccacagcacaaggactatctagtggtgatagaagctcttctagttcatcctttacaccaatccataggagagctggaccatcagagttgcagtcattttcagagtcctggagatctcgatttagttctatgtcaatgaaatataaagaatcgatctcaaagaatacacgagagtggaaggagagattgttttctcgaagttcttcaatgccggatgctggtcctgttaggagagagtcaaatggttggaattgctagtctattctcacctgatggaacatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="112155" stop="113426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112455" g_stop="112620" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.529" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112762" g_stop="112869" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="274" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112986" g_stop="113126" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="417" r_length="143" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-E249300" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249300" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112455" e_stop="112620"/>
          <exon e_start="112762" e_stop="112869"/>
          <exon e_start="112986" e_stop="113126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAGGTAGTTATGGTTTTCAACATCCTTCCAATTTTATGCACACCTGGGTTTTATCTTAAATTGGTTTATGATGGGTTGGATTGGAAACTCATGCAGATTTCTTAAATCAGCTCTCATTTGTTTTTGGGTTTTCTGTCTTTCTAGAAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAAGTATGAATGACTTCACTCAATTACTTTTATTCTTAATATTAGCAGTTGTACTTATTTTATATTTTTTTGGGGTCATCTTAAGCCTGGTGCGTGTTATATATGTTCTTGTGCTCCAGATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAAT-GTTGGAATTGCTAGTCTA-TCTCACCTGATGGAACATCT</genome_strand>
        <mrna_strand>CTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG.............................................................................................................................................AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA....................................................................................................................ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGGTTGGAATTGCTAGTCTATTCTCACCTGATGGAACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>118</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1189" PGL_stop="7159"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1189" e_stop="1305"/>
            <exon e_start="1472" e_stop="1528"/>
            <exon e_start="2773" e_stop="2821"/>
            <exon e_start="3520" e_stop="3608"/>
            <exon e_start="3689" e_stop="3762"/>
            <exon e_start="4343" e_stop="4385"/>
            <exon e_start="4464" e_stop="4524"/>
            <exon e_start="4632" e_stop="4657"/>
            <exon e_start="4761" e_stop="4838"/>
            <exon e_start="6002" e_stop="6082"/>
            <exon e_start="6528" e_stop="6593"/>
            <exon e_start="6681" e_stop="7159"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.814" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.919" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1189" e_stop="1305" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.989">
            <gDNA_intron_boundary i_start="1306" i_stop="1471" i_length="166"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1472" e_stop="1528" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1529" i_stop="2772" i_length="1244"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="2773" e_stop="2821" e_length="49"/>
          </exon>
          <intron i_serial="3" don_prob="0.814" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2822" i_stop="3519" i_length="698"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3520" e_stop="3608" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3609" i_stop="3688" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3689" e_stop="3762" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3763" i_stop="4342" i_length="580"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="4343" e_stop="4385" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4386" i_stop="4463" i_length="78"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4464" e_stop="4524" e_length="61"/>
          </exon>
          <intron i_serial="7" don_prob="0.828" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4525" i_stop="4631" i_length="107"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4632" e_stop="4657" e_length="26"/>
          </exon>
          <intron i_serial="8" don_prob="0.919" acc_prob="0.994">
            <gDNA_intron_boundary i_start="4658" i_stop="4760" i_length="103"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4761" e_stop="4838" e_length="78"/>
          </exon>
          <intron i_serial="9" don_prob="0.970" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4839" i_stop="6001" i_length="1163"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="6002" e_stop="6082" e_length="81"/>
          </exon>
          <intron i_serial="10" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6083" i_stop="6527" i_length="445"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="6528" e_stop="6593" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="6594" i_stop="6680" i_length="87"/>
          </intron>
          <exon e_serial="12" e_score="0.979">
            <gDNA_exon_boundary e_start="6681" e_stop="7159" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1189" stop="1305"/>
              <exon start="1472" stop="1528"/>
              <exon start="2773" stop="2821"/>
              <exon start="3520" stop="3608"/>
              <exon start="3689" stop="3762"/>
              <exon start="4343" stop="4385"/>
              <exon start="4464" stop="4524"/>
              <exon start="4632" stop="4657"/>
              <exon start="4761" stop="4838"/>
              <exon start="6002" stop="6082"/>
              <exon start="6528" stop="6593"/>
              <exon start="6681" stop="7159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1223" stop="1305"/>
              <exon start="1472" stop="1528"/>
              <exon start="2773" stop="2821"/>
              <exon start="3520" stop="3608"/>
              <exon start="3689" stop="3762"/>
              <exon start="4343" stop="4385"/>
              <exon start="4464" stop="4524"/>
              <exon start="4632" stop="4657"/>
              <exon start="4761" stop="4838"/>
              <exon start="6002" stop="6082"/>
              <exon start="6528" stop="6566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4494" stop="4524"/>
              <exon start="4632" stop="4657"/>
              <exon start="4761" stop="4838"/>
              <exon start="6002" stop="6082"/>
              <exon start="6528" stop="6593"/>
              <exon start="6681" stop="6930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4764" stop="4838"/>
              <exon start="6002" stop="6082"/>
              <exon start="6528" stop="6593"/>
              <exon start="6681" stop="7154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6545" stop="6593"/>
              <exon start="6681" stop="7117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250875" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6585" stop="6593"/>
              <exon start="6681" stop="7113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6709" stop="7117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGATGATAATTTTGATGCCCCAAGGCATCAAAGTAATAGAAATGGAGATGTTGAAATGGGAATACAAATACCAATGAATTCCGGGGAGCTAGGCCTTGATGATTTCTTTAAAAAG : GTTCAACAAATTGAGAAACAGTATGGAAGACTGAACGAACTACTCCAGAAGCTTCAG : GATGCACATGAGGAATCAAAGGCTGTTACAAAAGCTTCTGCTATGAAAG : CAATTAAGCAGCGGATGGAAAAAGATGTTGATGAAGTCGGAAAAATAGCTCGAGTAATCAAATCAAAAATCGAGGAGCTTGATAAAGAA : AATCTAGCCAATAGAAACAAACCAGGTTGTGGTAAAGGATCAGCTGTTGACAGATCAAGAACAGCAACAACAGT : TTCCTTGAAAAAGAAGTTCAAAGATAAAATGGCTGAGTTTCAG : ACTTTAAGAGAAAACATCCACCATGAATATCGCGAGGTTGTTGAAAGGCGAGTATTCACAG : TGACGGGTAATCGAGCTGATGAAGAG : ACAATTGATAGGTTGATAGAGACTGGAGACAGTGAACAGATATTCCAGAAAGCTATTCAGCAACAAGGGCGAGGACAA : ATAATGGGCACACTAGCTGAAATTCAAGAGCGCCATGATGCAGTTAGAGAATTAGAGAGGAAGCTTCTTGAGTTGCAACAG : ATATTCCTGGACATAGCAGTGTTGGTTGATGCTCAAGGAGACATGCTTGATAATATAGAATCACAG : GTTTCAACTGCTGTAGACCATGTACAATCAGGGACTACTGCTCTACAAAAGGCAAAGAAACTTCAAAAGAATTCAAGAAAATGGATGTGCTTTGCCATCATGATCCTCCTCATAATTGTCGCAATTATCGTCGTTGGTGTGCTCAAGCCATGGCAGAGTAACAAGGGTGCTTAACTTATTAATAATCCCACATGAGCAATGTATAGATACATGATGTATACTATCATTGCACATGCTATTCATTACAACATTTTCTTGGTTTTGTACATGTTGAACCTTGGGGCTTGCCTCTCTATATATAGTTTGAAGTGTGATTGAAACATGTAACCTATTCTTTATAATCTTGATTTTTATTTGGTTGGAATTGAGAGAACACTATTTGGATCGGAAAAATACATTTATCACAAATTTTAATGTACTCCAATGTCTTTGCTTGAATGAGCTTCTTTTTTTCATTTTGAACTTAATGAAGAACTCCA</gDNA_template>
            <first_frame> D  D  D  N  F  D  A  P  R  H  Q  S  N  R  N  G  D  V  E  M  G  I  Q  I  P  M  N  S  G  E  L  G  L  D  D  F  F  K  K  :  V  Q  Q  I  E  K  Q  Y  G  R  L  N  E  L  L  Q  K  L  Q  :  D  A  H  E  E  S  K  A  V  T  K  A  S  A  M  K   : A  I  K  Q  R  M  E  K  D  V  D  E  V  G  K  I  A  R  V  I  K  S  K  I  E  E  L  D  K  E  :  N  L  A  N  R  N  K  P  G  C  G  K  G  S  A  V  D  R  S  R  T  A  T  T  V :   S  L  K  K  K  F  K  D  K  M  A  E  F  Q  :  T  L  R  E  N  I  H  H  E  Y  R  E  V  V  E  R  R  V  F  T   : V  T  G  N  R  A  D  E  E  :  T  I  D  R  L  I  E  T  G  D  S  E  Q  I  F  Q  K  A  I  Q  Q  Q  G  R  G  Q  :  I  M  G  T  L  A  E  I  Q  E  R  H  D  A  V  R  E  L  E  R  K  L  L  E  L  Q  Q  :  I  F  L  D  I  A  V  L  V  D  A  Q  G  D  M  L  D  N  I  E  S  Q  :  V  S  T  A  V  D  H  V  Q  S  G  T  T  A  L  Q  K  A  K  K  L  Q  K  N  S  R  K  W  M  C  F  A  I  M  I  L  L  I  I  V  A  I  I  V  V  G  V  L  K  P  W  Q  S  N  K  G  A  *  L  I  N  N  P  T  *  A  M  Y  R  Y  M  M  Y  T  I  I  A  H  A  I  H  Y  N  I  F  L  V  L  Y  M  L  N  L  G  A  C  L  S  I  Y  S  L  K  C  D  *  N  M  *  P  I  L  Y  N  L  D  F  Y  L  V  G  I  E  R  T  L  F  G  S  E  K  Y  I  Y  H  K  F  *  C  T  P  M  S  L  L  E  *  A  S  F  F  H  F  E  L  N  E  E  L   </first_frame>
            <second_frame>  M  M  I  I  L  M  P  Q  G  I  K  V  I  E  M  E  M  L  K  W  E  Y  K  Y  Q  *  I  P  G  S  *  A  L  M  I  S  L  K  R :   F  N  K  L  R  N  S  M  E  D  *  T  N  Y  S  R  S  F  R :   M  H  M  R  N  Q  R  L  L  Q  K  L  L  L  *  K  :  Q  L  S  S  G  W  K  K  M  L  M  K  S  E  K  *  L  E  *  S  N  Q  K  S  R  S  L  I  K  K :   I  *  P  I  E  T  N  Q  V  V  V  K  D  Q  L  L  T  D  Q  E  Q  Q  Q  Q   : F  P  *  K  R  S  S  K  I  K  W  L  S  F  R :   L  *  E  K  T  S  T  M  N  I  A  R  L  L  K  G  E  Y  S  Q  :  *  R  V  I  E  L  M  K  R :   Q  L  I  G  *  *  R  L  E  T  V  N  R  Y  S  R  K  L  F  S  N  K  G  E  D  K :   *  W  A  H  *  L  K  F  K  S  A  M  M  Q  L  E  N  *  R  G  S  F  L  S  C  N  R :   Y  S  W  T  *  Q  C  W  L  M  L  K  E  T  C  L  I  I  *  N  H  R :   F  Q  L  L  *  T  M  Y  N  Q  G  L  L  L  Y  K  R  Q  R  N  F  K  R  I  Q  E  N  G  C  A  L  P  S  *  S  S  S  *  L  S  Q  L  S  S  L  V  C  S  S  H  G  R  V  T  R  V  L  N  L  L  I  I  P  H  E  Q  C  I  D  T  *  C  I  L  S  L  H  M  L  F  I  T  T  F  S  W  F  C  T  C  *  T  L  G  L  A  S  L  Y  I  V  *  S  V  I  E  T  C  N  L  F  F  I  I  L  I  F  I  W  L  E  L  R  E  H  Y  L  D  R  K  N  T  F  I  T  N  F  N  V  L  Q  C  L  C  L  N  E  L  L  F  F  I  L  N  L  M  K  N  S  </second_frame>
            <third_frame>   *  *  *  F  *  C  P  K  A  S  K  *  *  K  W  R  C  *  N  G  N  T  N  T  N  E  F  R  G  A  R  P  *  *  F  L  *  K   : G  S  T  N  *  E  T  V  W  K  T  E  R  T  T  P  E  A  S   : G  C  T  *  G  I  K  G  C  Y  K  S  F  C  Y  E  S :   N  *  A  A  D  G  K  R  C  *  *  S  R  K  N  S  S  S  N  Q  I  K  N  R  G  A  *  *  R   : K  S  S  Q  *  K  Q  T  R  L  W  *  R  I  S  C  *  Q  I  K  N  S  N  N  S  :  F  L  E  K  E  V  Q  R  *  N  G  *  V  S   : D  F  K  R  K  H  P  P  *  I  S  R  G  C  *  K  A  S  I  H  S :   D  G  *  S  S  *  *  R   : D  N  *  *  V  D  R  D  W  R  Q  *  T  D  I  P  E  S  Y  S  A  T  R  A  R  T   : N  N  G  H  T  S  *  N  S  R  A  P  *  C  S  *  R  I  R  E  E  A  S  *  V  A  T   : D  I  P  G  H  S  S  V  G  *  C  S  R  R  H  A  *  *  Y  R  I  T   : G  F  N  C  C  R  P  C  T  I  R  D  Y  C  S  T  K  G  K  E  T  S  K  E  F  K  K  M  D  V  L  C  H  H  D  P  P  H  N  C  R  N  Y  R  R  W  C  A  Q  A  M  A  E  *  Q  G  C  L  T  Y  *  *  S  H  M  S  N  V  *  I  H  D  V  Y  Y  H  C  T  C  Y  S  L  Q  H  F  L  G  F  V  H  V  E  P  W  G  L  P  L  Y  I  *  F  E  V  *  L  K  H  V  T  Y  S  L  *  S  *  F  L  F  G  W  N  *  E  N  T  I  W  I  G  K  I  H  L  S  Q  I  L  M  Y  S  N  V  F  A  *  M  S  F  F  F  S  F  *  T  *  *  R  T  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1189" stop="1305"/>
                    <exon start="1472" stop="1528"/>
                    <exon start="2773" stop="2821"/>
                    <exon start="3520" stop="3608"/>
                    <exon start="3689" stop="3762"/>
                    <exon start="4343" stop="4385"/>
                    <exon start="4464" stop="4524"/>
                    <exon start="4632" stop="4657"/>
                    <exon start="4761" stop="4838"/>
                    <exon start="6002" stop="6082"/>
                    <exon start="6528" stop="6593"/>
                    <exon start="6681" stop="6854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DDDNFDAPRHQSNRNGDVEMGIQIPMNSGELGLDDFFKKVQQIEKQYGRLNELLQKLQDAHEESKAVTKASAMKAIKQRMEKDVDEVGKIARVIKSKIEELDKENLANRNKPGCGKGSAVDRSRTATTVSLKKKFKDKMAEFQTLRENIHHEYREVVERRVFTVTGNRADEETIDRLIETGDSEQIFQKAIQQQGRGQIMGTLAEIQERHDAVRELERKLLELQQIFLDIAVLVDAQGDMLDNIESQVSTAVDHVQSGTTALQKAKKLQKNSRKWMCFAIMILLIIVAIIVVGVLKPWQSNKGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="2181" e_stop="2702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="2181" e_stop="2702" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2181" stop="2702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</gDNA_template>
            <first_frame> P  S  A  Q  R  C  H  I  L  T  C  L  C  S  P  F  Q  L  G  G  F  Q  S  Y  I  S  V  S  E  S  M  K  L  *  C  V  *  C  V  A  F  F  L  L  T  T  *  F  I  S  L  C  S  F  I  F  *  F  N  S  N  K  L  L  Q  L  E  E  S  V  F  *  S  A  C  L  A  *  F  N  A  I  F  E  Q  I  *  V  V  I  S  R  T  L  A  T  S  F  P  P  F  *  P  S  A  V  *  *  Y  S  K  V  L  R  D  N  L  Y  S  S  T  L  L  E  C  S  S  I  C  P  L  Y  F  I  F  F  S  Q  C  V  L  Q  L  T  *  G  S  C  G  *  L  R  I  I  V  Q  F  V  G  *  L  A  Q  Y  I  H  K  P  N  E  L  K  I  I </first_frame>
            <second_frame>  Q  V  R  K  G  V  T  F  *  H  V  C  V  L  P  F  S  *  G  A  F  R  V  T  Y  L  Y  Q  N  Q  *  S  Y  N  V  F  N  V  S  L  S  S  C  *  P  P  D  L  *  A  F  A  A  L  Y  F  N  S  I  P  T  N  F  Y  N  W  K  N  R  Y  F  E  V  H  V  L  H  N  L  M  R  Y  L  S  R  Y  K  L  S  S  L  G  L  S  Q  L  H  F  H  H  F  D  L  Q  L  F  S  N  I  V  K  F  *  E  T  I  C  I  P  L  H  Y  *  N  V  L  P  Y  A  P  S  I  S  Y  F  S  L  N  V  Y  F  N  *  L  R  V  H  V  V  N  *  E  L  *  F  N  L  *  V  N  *  H  N  I  Y  I  S  Q  M  S  L  K  *   </second_frame>
            <third_frame>   K  C  A  K  V  S  H  S  N  M  F  V  F  S  L  S  V  R  G  L  S  E  L  H  I  C  I  R  I  N  E  V  I  M  C  L  M  C  R  F  L  P  V  D  H  L  I  Y  K  P  L  Q  L  Y  I  L  I  Q  F  Q  Q  T  S  T  I  G  R  I  G  I  L  K  C  M  S  C  I  I  *  C  D  I  *  A  D  I  S  C  H  L  S  D  S  R  N  F  I  S  T  I  L  T  F  S  C  L  V  I  *  *  S  S  E  R  Q  F  V  F  L  Y  I  T  R  M  F  F  H  M  P  P  L  F  H  I  F  L  S  M  C  T  S  T  N  L  G  F  M  W  L  I  K  N  Y  S  S  I  C  R  L  I  S  T  I  Y  T  *  A  K  *  A  *  N  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2183" stop="2419"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KCAKVSHSNMFVFSLSVRGLSELHICIRINEVIMCLMCRFLPVDHLIYKPLQLYILIQFQQTSTIGRIGILKCMSCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7658" PGL_stop="11324"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7658" e_stop="7999"/>
            <exon e_start="9053" e_stop="9211"/>
            <exon e_start="10280" e_stop="10361"/>
            <exon e_start="10775" e_stop="11172"/>
            <exon e_start="11299" e_stop="11324"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.652" acc_prob="0.901" e_score="0.970"/>
          <exon-only e_score="0.577"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7658" e_stop="7999" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9053" e_stop="9211" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.559" acc_prob="0.987">
            <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10280" e_stop="10361" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.970">
            <gDNA_exon_boundary e_start="10775" e_stop="11172" e_length="398"/>
          </exon>
          <intron i_serial="4" don_prob="0.652" acc_prob="0.901">
            <gDNA_intron_boundary i_start="11173" i_stop="11298" i_length="126"/>
          </intron>
          <exon e_serial="5" e_score="0.577">
            <gDNA_exon_boundary e_start="11299" e_stop="11324" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7658" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10361"/>
              <exon start="10775" stop="10888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7661" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10361"/>
              <exon start="10775" stop="10795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7691" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10361"/>
              <exon start="10775" stop="11106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7715" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7715" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11046" stop="11172"/>
              <exon start="11299" stop="11324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233971" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG : AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG : AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG : GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCATAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCTAAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAG : GTCTCTCTTTAAAGAAGAAACAAACT</gDNA_template>
            <first_frame> K  H  Y  T  F  Y  T  K  M  E  T  A  R  D  T  V  Q  H  D  A  V  L  P  A  G  D  D  D  T  P  T  L  S  S  H  A  L  E  A  L  K  E  F  L  A  E  Q  S  R  A  V  E  E  A  S  S  A  A  A  E  D  D  V  A  L  V  S  E  D  W  R  L  S  Q  F  W  Y  N  R  E  T  A  E  T  V  A  N  E  V  L  N  L  C  R  S  I  D  S  P  A  I  A  C  I  A  C  P  T  L  Y  A  Y  L  K  :  K  I  D  P  N  A  P  A  Q  I  L  E  Y  D  K  R  F  E  Q  Y  G  S  E  F  T  F  Y  D  Y  N  L  P  E  D  L  P  S  S  M  K  H  S  Y  P  I  I  V  A  D  P  P  Y  L  :  S  Q  E  C  L  E  K  V  A  K  T  I  S  F  L  T  R  P  G  Q  A  Y  L  L  L  L  T   : G  E  V  Q  S  G  R  A  S  E  L  L  G  L  R  P  C  A  F  R  P  D  H  S  S  K  L  G  N  E  F  R  L  F  T  N  Y  D  P  G  T  R  L  G  G  W  E  Q  V  *  Q  T  L  L  Q  L  E  I  F  F  S  K  E  T  I  G  *  H  W  F  A  I  E  V  F  S  N  I  L  *  I  Y  T  S  F  H  G  I  S  S  L  N  H  L  Q  L  P  K  H  I  *  K  S  T  K  Y  Y  Y  D  F  I  V  V  S  C  M  Y  S  G  F  A  *  V  T  C  F  F  L  *  E  P  F  K  :  V  S  L  *  R  R  N  K   </first_frame>
            <second_frame>  N  I  T  L  F  T  L  K  W  R  Q  R  E  T  P  Y  S  T  T  P  F  C  R  P  A  T  M  I  L  R  R  *  A  L  T  L  *  K  H  *  R  S  S  L  L  S  R  A  E  Q  L  R  K  L  R  Q  L  R  R  R  M  T  W  R  W  Y  R  R  I  G  G  *  A  S  S  G  I  T  V  K  Q  L  K  L  S  L  M  K  S  L  I  S  V  D  R  L  I  R  R  R  L  P  A  L  L  V  P  H  F  M  L  I  S  R :   K  L  T  L  M  H  L  H  K  F  S  S  M  T  N  G  L  N  S  M  E  V  S  S  H  S  T  T  T  T  Y  Q  K  I  F  L  L  Q  *  N  T  H  I  Q  *  L  L  Q  I  L  L  T  * :   V  R  N  A  *  R  K  L  L  K  Q  F  L  F  S  R  D  Q  D  K  P  T  C  F  Y  S  Q  :  V  K  C  K  V  V  G  L  P  S  S  W  V  Y  V  H  A  L  L  G  Q  I  T  P  A  N  *  A  M  N  F  D  C  L  Q  T  M  T  Q  G  Q  G  *  V  A  G  S  R  C  N  K  H  F  S  N  W  K  S  S  S  P  K  K  P  *  V  D  I  G  L  Q  *  K  F  F  Q  T  Y  F  E  S  T  H  P  S  M  E  Y  H  L  *  I  I  F  S  Y  L  N  I  S  E  R  V  Q  N  I  T  M  I  L  *  L  Y  L  V  C  I  L  V  S  L  E  L  L  V  S  F  Y  R  N  H  L  R :   S  L  F  K  E  E  T  N  </second_frame>
            <third_frame>   T  L  H  F  L  H  *  N  G  D  S  E  R  H  R  T  A  R  R  R  S  A  G  R  R  R  *  Y  S  D  V  K  L  S  R  S  R  S  T  E  G  V  P  C  *  A  E  P  S  S  *  G  S  F  V  S  C  G  G  G  *  R  G  A  G  I  G  G  L  A  A  K  P  V  L  V  *  P  *  N  S  *  N  C  R  *  *  S  P  *  S  L  S  I  D  *  F  A  G  D  C  L  H  C  L  S  H  T  L  C  L  S  Q   : E  N  *  P  *  C  T  C  T  N  S  R  V  *  Q  T  V  *  T  V  W  K  *  V  H  I  L  R  L  Q  P  T  R  R  S  S  F  F  N  E  T  L  I  S  N  N  C  C  R  S  S  L  P   : E  S  G  M  L  R  E  S  C  *  N  N  F  F  S  H  E  T  R  T  S  L  L  A  F  T  H  R :   *  S  A  K  W  *  G  F  R  A  L  G  F  T  S  M  R  F  *  A  R  S  L  Q  Q  T  R  Q  *  I  S  T  V  Y  K  L  *  P  R  D  K  A  R  W  L  G  A  G  V  T  N  T  S  P  I  G  N  L  L  L  Q  R  N  H  R  L  T  L  V  C  N  R  S  F  F  K  H  T  L  N  L  H  I  L  P  W  N  I  I  S  K  S  S  S  V  T  *  T  Y  L  K  E  Y  K  I  L  L  *  F  Y  S  C  I  L  Y  V  F  W  F  R  L  S  Y  L  F  L  S  I  G  T  I  *   : G  L  S  L  K  K  K  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7658" stop="7999"/>
                    <exon start="9053" stop="9211"/>
                    <exon start="10280" stop="10361"/>
                    <exon start="10775" stop="10923"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHYTFYTKMETARDTVQHDAVLPAGDDDTPTLSSHALEALKEFLAEQSRAVEEASSAAAEDDVALVSEDWRLSQFWYNRETAETVANEVLNLCRSIDSPAIACIACPTLYAYLKKIDPNAPAQILEYDKRFEQYGSEFTFYDYNLPEDLPSSMKHSYPIIVADPPYLSQECLEKVAKTISFLTRPGQAYLLLLTGEVQSGRASELLGLRPCAFRPDHSSKLGNEFRLFTNYDPGTRLGGWEQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7715" e_stop="7999"/>
            <exon e_start="9053" e_stop="9211"/>
            <exon e_start="10280" e_stop="10487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.559" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7715" e_stop="7999" e_length="285"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9053" e_stop="9211" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.559" acc_prob="0.987">
            <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10280" e_stop="10487" e_length="208"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7715" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7715" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7716" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254262" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG : AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG : AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCT</gDNA_template>
            <first_frame> A  V  L  P  A  G  D  D  D  T  P  T  L  S  S  H  A  L  E  A  L  K  E  F  L  A  E  Q  S  R  A  V  E  E  A  S  S  A  A  A  E  D  D  V  A  L  V  S  E  D  W  R  L  S  Q  F  W  Y  N  R  E  T  A  E  T  V  A  N  E  V  L  N  L  C  R  S  I  D  S  P  A  I  A  C  I  A  C  P  T  L  Y  A  Y  L  K  :  K  I  D  P  N  A  P  A  Q  I  L  E  Y  D  K  R  F  E  Q  Y  G  S  E  F  T  F  Y  D  Y  N  L  P  E  D  L  P  S  S  M  K  H  S  Y  P  I  I  V  A  D  P  P  Y  L  :  S  Q  E  C  L  E  K  V  A  K  T  I  S  F  L  T  R  P  G  Q  A  Y  L  L  L  L  T  G  T  Y  *  I  L  C  S  V  L  R  L  G  L  P  L  A  V  V  H  H  V  N  G  H  *  I  *  L  L  F  F  K  D  P  *  T  M  N  P  V  I  </first_frame>
            <second_frame>  P  F  C  R  P  A  T  M  I  L  R  R  *  A  L  T  L  *  K  H  *  R  S  S  L  L  S  R  A  E  Q  L  R  K  L  R  Q  L  R  R  R  M  T  W  R  W  Y  R  R  I  G  G  *  A  S  S  G  I  T  V  K  Q  L  K  L  S  L  M  K  S  L  I  S  V  D  R  L  I  R  R  R  L  P  A  L  L  V  P  H  F  M  L  I  S  R :   K  L  T  L  M  H  L  H  K  F  S  S  M  T  N  G  L  N  S  M  E  V  S  S  H  S  T  T  T  T  Y  Q  K  I  F  L  L  Q  *  N  T  H  I  Q  *  L  L  Q  I  L  L  T  * :   V  R  N  A  *  R  K  L  L  K  Q  F  L  F  S  R  D  Q  D  K  P  T  C  F  Y  S  Q  V  H  T  E  F  Y  A  V  F  Y  D  L  V  S  R  W  L  S  F  I  M  L  M  V  I  E  S  S  Y  C  F  L  R  I  L  K  Q  *  I  Q  L  S </second_frame>
            <third_frame>   R  S  A  G  R  R  R  *  Y  S  D  V  K  L  S  R  S  R  S  T  E  G  V  P  C  *  A  E  P  S  S  *  G  S  F  V  S  C  G  G  G  *  R  G  A  G  I  G  G  L  A  A  K  P  V  L  V  *  P  *  N  S  *  N  C  R  *  *  S  P  *  S  L  S  I  D  *  F  A  G  D  C  L  H  C  L  S  H  T  L  C  L  S  Q   : E  N  *  P  *  C  T  C  T  N  S  R  V  *  Q  T  V  *  T  V  W  K  *  V  H  I  L  R  L  Q  P  T  R  R  S  S  F  F  N  E  T  L  I  S  N  N  C  C  R  S  S  L  P   : E  S  G  M  L  R  E  S  C  *  N  N  F  F  S  H  E  T  R  T  S  L  L  A  F  T  H  R  Y  I  L  N  F  M  Q  C  F  T  T  W  S  P  V  G  C  R  S  S  C  *  W  S  L  N  L  V  I  V  F  *  G  S  L  N  N  E  S  S  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7715" stop="7999"/>
                    <exon start="9053" stop="9211"/>
                    <exon start="10280" stop="10372"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVLPAGDDDTPTLSSHALEALKEFLAEQSRAVEEASSAAAEDDVALVSEDWRLSQFWYNRETAETVANEVLNLCRSIDSPAIACIACPTLYAYLKKIDPNAPAQILEYDKRFEQYGSEFTFYDYNLPEDLPSSMKHSYPIIVADPPYLSQECLEKVAKTISFLTRPGQAYLLLLTGTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="7705" e_stop="7999"/>
            <exon e_start="9053" e_stop="9116"/>
            <exon e_start="9198" e_stop="9230"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.925"/>
          <exon-intron don_prob="0.313" acc_prob="0.863" e_score="0.969"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="7705" e_stop="7999" e_length="295"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="9053" e_stop="9116" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.313" acc_prob="0.863">
            <gDNA_intron_boundary i_start="9117" i_stop="9197" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="9198" e_stop="9230" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7705" stop="7999"/>
              <exon start="9053" stop="9116"/>
              <exon start="9198" stop="9230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367602" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG : AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAA : ATCCTCCTTACCTGGTGAGAGCTGATATATGCT</gDNA_template>
            <first_frame> T  A  R  R  R  S  A  G  R  R  R  *  Y  S  D  V  K  L  S  R  S  R  S  T  E  G  V  P  C  *  A  E  P  S  S  *  G  S  F  V  S  C  G  G  G  *  R  G  A  G  I  G  G  L  A  A  K  P  V  L  V  *  P  *  N  S  *  N  C  R  *  *  S  P  *  S  L  S  I  D  *  F  A  G  D  C  L  H  C  L  S  H  T  L  C  L  S  Q   : E  N  *  P  *  C  T  C  T  N  S  R  V  *  Q  T  V  *  T  V  W  K :   S  S  L  P  G  E  S  *  Y  M   </first_frame>
            <second_frame>  Q  H  D  A  V  L  P  A  G  D  D  D  T  P  T  L  S  S  H  A  L  E  A  L  K  E  F  L  A  E  Q  S  R  A  V  E  E  A  S  S  A  A  A  E  D  D  V  A  L  V  S  E  D  W  R  L  S  Q  F  W  Y  N  R  E  T  A  E  T  V  A  N  E  V  L  N  L  C  R  S  I  D  S  P  A  I  A  C  I  A  C  P  T  L  Y  A  Y  L  K  :  K  I  D  P  N  A  P  A  Q  I  L  E  Y  D  K  R  F  E  Q  Y  G   : N  P  P  Y  L  V  R  A  D  I  C  </second_frame>
            <third_frame>   S  T  T  P  F  C  R  P  A  T  M  I  L  R  R  *  A  L  T  L  *  K  H  *  R  S  S  L  L  S  R  A  E  Q  L  R  K  L  R  Q  L  R  R  R  M  T  W  R  W  Y  R  R  I  G  G  *  A  S  S  G  I  T  V  K  Q  L  K  L  S  L  M  K  S  L  I  S  V  D  R  L  I  R  R  R  L  P  A  L  L  V  P  H  F  M  L  I  S  R :   K  L  T  L  M  H  L  H  K  F  S  S  M  T  N  G  L  N  S  M  E  :  I  L  L  T  W  *  E  L  I  Y  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7706" stop="7999"/>
                    <exon start="9053" stop="9116"/>
                    <exon start="9198" stop="9229"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHDAVLPAGDDDTPTLSSHALEALKEFLAEQSRAVEEASSAAAEDDVALVSEDWRLSQFWYNRETAETVANEVLNLCRSIDSPAIACIACPTLYAYLKKIDPNAPAQILEYDKRFEQYGNPPYLVRADIC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13949" PGL_stop="17376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13949" e_stop="14019"/>
            <exon e_start="15380" e_stop="15545"/>
            <exon e_start="16369" e_stop="16672"/>
            <exon e_start="16928" e_stop="16960"/>
            <exon e_start="17053" e_stop="17144"/>
            <exon e_start="17305" e_stop="17376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.966" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13949" e_stop="14019" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15380" e_stop="15545" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16369" e_stop="16672" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16928" e_stop="16960" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.444" acc_prob="0.968">
            <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="17053" e_stop="17144" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17305" e_stop="17376" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13949" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13953" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17144"/>
              <exon start="17305" stop="17376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13954" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13955" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13955" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13961" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13964" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13964" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13980" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13980" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13980" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329795" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG : GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG : TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG : TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG : GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTGGATTTGCAT : ATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</gDNA_template>
            <first_frame> K  L  E  I  S  E  E  E  E  E  E  K  T  Q  R  K  *  D  Q  I  L  F  L  R :   R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  :  F  T  G  F  S  P  Q  F  C  F  M  V  L  Y  C  M  F  C  L  I  C  *  L  W  S  L  W  V  Q  S  W  R  G  L  W  D  Q  C  A  C  Y  I  *  L  F  C  W  P  L  A  M  P  Y  S  I  F  L  *  H  C  W  L  P  I  I  P  F  I  L  I  H  T  L  W  T  S  V  L  *  V  S  Q  G  S  Y  F  Q  *  L  *  W  R  Q  V  S  V  G  P  K  L  E   : V  C  L  G  F  L  M  C  Q  L  N   : G  M  H  *  S  Y  W  W  F  F  S  L  L  *  L  M  S  L  Y  L  D  I  F  V  V  F  C  L  D  L  H  :  I  H  M  D  C  S  M  S  *  Y  L  G  H  L  S  S  R  L  L  N  L  P  L  G </first_frame>
            <second_frame>  N  W  K  S  L  K  K  K  K  K  K  K  L  S  E  N  E  T  K  Y  C  F  *   : G  G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  S :   L  Q  D  F  H  L  N  S  V  S  W  F  S  T  A  C  S  V  *  Y  V  S  F  G  P  F  G  F  R  A  G  E  D  Y  G  I  S  A  P  V  I  Y  N  C  S  V  G  H  *  Q  C  L  T  P  S  S  Y  S  I  V  G  C  P  *  S  P  S  S  L  S  I  L  Y  G  R  V  C  Y  R  F  L  R  D  L  I  F  N  D  C  D  G  D  K  S  Q  W  G  P  N  *  K  :  C  V  W  A  F  *  C  A  S  *  M  :  V  C  I  D  L  T  G  G  F  S  A  C  Y  D  *  C  L  F  T  W  T  S  L  W  Y  F  V  W  I  C  I :   Y  I  W  I  V  Q  C  L  N  T  W  D  I  F  L  L  G  Y  *  I  F  H  L   </second_frame>
            <third_frame>   I  G  N  L  *  R  R  R  R  R  K  N  S  A  K  M  R  P  N  I  V  S  E  :  A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q   : V  Y  R  I  F  T  S  I  L  F  H  G  S  L  L  H  V  L  F  N  M  L  A  L  V  P  L  G  S  E  L  E  R  I  M  G  S  V  R  L  L  Y  I  I  V  L  L  A  I  S  N  A  L  L  H  L  L  I  A  L  L  V  A  H  N  P  L  H  P  Y  P  Y  F  M  D  E  C  A  I  G  F  S  G  I  L  F  S  M  I  V  M  E  T  S  L  S  G  A  Q  T  R  S :   V  F  G  L  F  N  V  P  A  K  W :   Y  A  L  I  L  L  V  V  F  Q  L  V  M  T  N  V  S  L  L  G  H  L  C  G  I  L  S  G  F  A   : Y  T  Y  G  L  F  N  V  L  I  P  G  T  S  F  F  S  A  I  E  S  S  T  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13966" stop="14019"/>
                    <exon start="15380" stop="15545"/>
                    <exon start="16369" stop="16672"/>
                    <exon start="16928" stop="16960"/>
                    <exon start="17053" stop="17144"/>
                    <exon start="17305" stop="17375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRRKNSAKMRPNIVSEAGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQVYRIFTSILFHGSLLHVLFNMLALVPLGSELERIMGSVRLLYIIVLLAISNALLHLLIALLVAHNPLHPYPYFMDECAIGFSGILFSMIVMETSLSGAQTRSVFGLFNVPAKWYALILLVVFQLVMTNVSLLGHLCGILSGFAYTYGLFNVLIPGTSFFSAIESSTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13961" e_stop="14019"/>
            <exon e_start="15096" e_stop="15184"/>
            <exon e_start="15380" e_stop="15545"/>
            <exon e_start="16369" e_stop="16578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13961" e_stop="14019" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.669">
            <gDNA_intron_boundary i_start="14020" i_stop="15095" i_length="1076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15096" e_stop="15184" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15185" i_stop="15379" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15380" e_stop="15545" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="16369" e_stop="16578" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13961" stop="14019"/>
              <exon start="15096" stop="15184"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347220" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG : GTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAA : GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG : TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATC</gDNA_template>
            <first_frame> S  E  E  E  E  E  E  K  T  Q  R  K  *  D  Q  I  L  F  L  R :   *  D  M  C  G  F  L  F  N  F  I  Q  D  Y  M  C  T  P  K  V  G  R  R  S  C  S  L  K  P   : S  G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  S :   L  Q  D  F  H  L  N  S  V  S  W  F  S  T  A  C  S  V  *  Y  V  S  F  G  P  F  G  F  R  A  G  E  D  Y  G  I  S  A  P  V  I  Y  N  C  S  V  G  H  *  Q  C  L  T  P  S  S  Y  S  I  V  G  C  P  *  S  P  S  S  L   </first_frame>
            <second_frame>  L  K  K  K  K  K  K  K  L  S  E  N  E  T  K  Y  C  F  *   : G  R  T  C  V  A  S  C  S  I  L  Y  K  I  I  C  A  L  P  K  L  D  G  V  V  V  R  *  S  Q  :  A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q   : V  Y  R  I  F  T  S  I  L  F  H  G  S  L  L  H  V  L  F  N  M  L  A  L  V  P  L  G  S  E  L  E  R  I  M  G  S  V  R  L  L  Y  I  I  V  L  L  A  I  S  N  A  L  L  H  L  L  I  A  L  L  V  A  H  N  P  L  H  P  Y  </second_frame>
            <third_frame>   *  R  R  R  R  R  K  N  S  A  K  M  R  P  N  I  V  S  E  :  V  G  H  V  W  L  L  V  Q  F  Y  T  R  L  Y  V  H  S  Q  S  W  T  A  *  L  F  A  K  A  K :   R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  :  F  T  G  F  S  P  Q  F  C  F  M  V  L  Y  C  M  F  C  L  I  C  *  L  W  S  L  W  V  Q  S  W  R  G  L  W  D  Q  C  A  C  Y  I  *  L  F  C  W  P  L  A  M  P  Y  S  I  F  L  *  H  C  W  L  P  I  I  P  F  I  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15179" stop="15184"/>
                    <exon start="15380" stop="15545"/>
                    <exon start="16369" stop="16577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQAGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQVYRIFTSILFHGSLLHVLFNMLALVPLGSELERIMGSVRLLYIIVLLAISNALLHLLIALLVAHNPLHPY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18171" PGL_stop="21549"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18206" e_stop="18244"/>
            <exon e_start="18600" e_stop="18769"/>
            <exon e_start="19239" e_stop="19290"/>
            <exon e_start="19369" e_stop="19425"/>
            <exon e_start="19551" e_stop="19625"/>
            <exon e_start="19709" e_stop="19989"/>
            <exon e_start="20072" e_stop="20077"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.803" acc_prob="0.698" e_score="0.996"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18206" e_stop="18244" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18600" e_stop="18769" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19239" e_stop="19290" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19369" e_stop="19425" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19551" e_stop="19625" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.899">
            <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="19709" e_stop="19989" e_length="281"/>
          </exon>
          <intron i_serial="6" don_prob="0.803" acc_prob="0.698">
            <gDNA_intron_boundary i_start="19990" i_stop="20071" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="20072" e_stop="20077" e_length="6"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18206" stop="18244"/>
              <exon start="18600" stop="18769"/>
              <exon start="19239" stop="19290"/>
              <exon start="19369" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19989"/>
              <exon start="20072" stop="20077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18750" stop="18769"/>
              <exon start="19239" stop="19290"/>
              <exon start="19369" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG : CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAG : ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG : GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG : ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG : GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTTTCTTAGCCTATACCCAAT : ACTAAA</gDNA_template>
            <first_frame> S  W  M  P  Q  R  E  S  S  L  S  A  Q  :  P  V  T  D  D  S  R  F  P  G  R  G  R  T  L  S  S  Q  T  T  T  T  N  H  D  S  T  L  Q  A  R  L  L  D  G  S  S  S  P  E  R  S  S  P  T  A  T  I  A  G  E  R  S  L  A  G  R :   L  S  A  V  D  T  T  T  T  A  T  R  P  L  G  Q  Q  :  A  S  I  P  S  D  E  E  V  Q  K  L  V  A  M  G  F  E  K  :  T  Q  V  E  V  A  L  A  A  A  E  G  D  L  N  V  A  V  E  I  L  M  S  Q  Q  :  G  *  Y  E  R  I  *  H  Q  D  L  T  Q  K  A  E  A  L  Q  N  *  *  S  N  S  S  S  P  R  C  F  P  L  L  F  G  C  I  *  S  Y  S  K  F  T  Q  F  L  E  R  W  K  T  F  L  V  C  D  L  R  L  I  P  I  K  Q  R  *  I  V  Y  L  P  S  *  F  *  M  L  Q  Y  Q  *  I  I  L  Y  F  L  S  L  Y  P  I :   L   </first_frame>
            <second_frame>  R  G  C  H  R  E  R  A  L  S  L  L  S :   R  *  Q  M  I  A  G  F  L  G  E  E  E  L  *  V  P  R  P  P  P  L  I  M  I  Q  R  Y  R  L  G  S  W  M  V  A  A  A  L  S  V  V  H  L  L  L  Q  *  L  E  S  G  A  *  L  E   : D  Y  Q  Q  L  I  L  P  P  Q  L  Q  D  R  *  D  S  R :   L  P  F  P  Q  M  K  K  F  R  N  L  L  Q  W  V  L  R  R :   H  K  *  K  L  H  W  L  Q  P  K  G  T  *  M  L  L  W  K  F  *  *  A  N  R :   V  N  M  K  G  Y  N  I  K  I  *  L  K  K  P  R  L  C  K  T  S  N  L  I  P  R  A  L  V  V  F  L  F  F  L  V  V  Y  N  L  T  A  N  L  H  N  S  *  R  D  G  R  P  S  *  C  V  I  Y  A  *  S  P  *  N  R  D  E  L  Y  I  Y  L  H  D  F  R  C  C  N  I  N  E  S  F  Y  I  F  L  A  Y  T  Q   : Y  *  </second_frame>
            <third_frame>   V  D  A  T  E  R  E  L  S  L  C  S   : A  G  D  R  *  *  Q  V  S  W  E  R  K  N  S  E  F  P  D  H  H  H  *  S  *  F  N  V  T  G  *  A  P  G  W  *  Q  Q  P  *  A  *  F  T  Y  C  Y  N  S  W  R  A  E  L  S  W  K  :  T  I  S  S  *  Y  Y  H  H  S  Y  K  T  A  R  T  A   : G  F  H  S  L  R  *  R  S  S  E  T  C  C  N  G  F  *  E   : D  T  S  R  S  C  T  G  C  S  R  R  G  L  E  C  C  C  G  N  F  N  E  P  T   : G  L  I  *  K  D  I  T  S  R  F  D  S  K  S  R  G  S  A  K  L  V  I  *  F  L  E  P  S  L  F  S  S  S  F  W  L  Y  I  I  L  Q  Q  I  Y  T  I  L  R  E  M  E  D  L  L  S  V  *  F  T  P  N  P  H  K  T  E  M  N  C  I  S  T  F  M  I  L  D  A  A  I  S  M  N  H  F  I  F  S  *  P  I  P  N  :  T  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18206" stop="18244"/>
                    <exon start="18600" stop="18769"/>
                    <exon start="19239" stop="19290"/>
                    <exon start="19369" stop="19425"/>
                    <exon start="19551" stop="19625"/>
                    <exon start="19709" stop="19714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWMPQRESSLSAQPVTDDSRFPGRGRTLSSQTTTTNHDSTLQARLLDGSSSPERSSPTATIAGERSLAGRLSAVDTTTTATRPLGQQASIPSDEEVQKLVAMGFEKTQVEVALAAAEGDLNVAVEILMSQQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18750" e_stop="18769"/>
            <exon e_start="19239" e_stop="19290"/>
            <exon e_start="19369" e_stop="19425"/>
            <exon e_start="19551" e_stop="19625"/>
            <exon e_start="19709" e_stop="19971"/>
            <exon e_start="20072" e_stop="20110"/>
            <exon e_start="20817" e_stop="20839"/>
            <exon e_start="21064" e_stop="21074"/>
            <exon e_start="21443" e_stop="21549"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.971" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.615"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.783"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.561"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18750" e_stop="18769" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.971" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19239" e_stop="19290" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19369" e_stop="19425" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19551" e_stop="19625" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.937" acc_prob="0.899">
            <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19709" e_stop="19971" e_length="263"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.698">
            <gDNA_intron_boundary i_start="19972" i_stop="20071" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="0.615">
            <gDNA_exon_boundary e_start="20072" e_stop="20110" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20111" i_stop="20816" i_length="706"/>
          </intron>
          <exon e_serial="7" e_score="0.783">
            <gDNA_exon_boundary e_start="20817" e_stop="20839" e_length="23"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20840" i_stop="21063" i_length="224"/>
          </intron>
          <exon e_serial="8" e_score="0.909">
            <gDNA_exon_boundary e_start="21064" e_stop="21074" e_length="11"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21075" i_stop="21442" i_length="368"/>
          </intron>
          <exon e_serial="9" e_score="0.561">
            <gDNA_exon_boundary e_start="21443" e_stop="21549" e_length="107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18750" stop="18769"/>
              <exon start="19239" stop="19290"/>
              <exon start="19369" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285486" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19258" stop="19290"/>
              <exon start="19369" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19971"/>
              <exon start="20072" stop="20110"/>
              <exon start="20817" stop="20839"/>
              <exon start="21064" stop="21074"/>
              <exon start="21443" stop="21549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19396" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGGAGCTTAGCTGGAAG : ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG : GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG : ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG : GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTT : ACTAAAAACACTGCTAAATGAGCCCTCGGGGTTTTGGTT : TTCTTTTTGTTTTTTTATTTAGC : AAAAAGAAAAA : ATTGAGTTTTTTTTTAGGAGATTGACAAGTTAATATATATATATATATATTGATTTTTTTAATAAATCCACAGAAAAAACAACGAAATTCATTTATACCCACGAACA</gDNA_template>
            <first_frame> E  R  S  L  A  G  R :   L  S  A  V  D  T  T  T  T  A  T  R  P  L  G  Q  Q  :  A  S  I  P  S  D  E  E  V  Q  K  L  V  A  M  G  F  E  K  :  T  Q  V  E  V  A  L  A  A  A  E  G  D  L  N  V  A  V  E  I  L  M  S  Q  Q  :  G  *  Y  E  R  I  *  H  Q  D  L  T  Q  K  A  E  A  L  Q  N  *  *  S  N  S  S  S  P  R  C  F  P  L  L  F  G  C  I  *  S  Y  S  K  F  T  Q  F  L  E  R  W  K  T  F  L  V  C  D  L  R  L  I  P  I  K  Q  R  *  I  V  Y  L  P  S  *  F  *  M  L  Q  Y  Q  *  I  I  L  Y  L :   L  K  T  L  L  N  E  P  S  G  F  W  F :   S  F  C  F  F  I  *   : Q  K  E  K  :  I  E  F  F  F  R  R  L  T  S  *  Y  I  Y  I  Y  I  D  F  F  N  K  S  T  E  K  T  T  K  F  I  Y  T  H  E   </first_frame>
            <second_frame>  S  G  A  *  L  E   : D  Y  Q  Q  L  I  L  P  P  Q  L  Q  D  R  *  D  S  R :   L  P  F  P  Q  M  K  K  F  R  N  L  L  Q  W  V  L  R  R :   H  K  *  K  L  H  W  L  Q  P  K  G  T  *  M  L  L  W  K  F  *  *  A  N  R :   V  N  M  K  G  Y  N  I  K  I  *  L  K  K  P  R  L  C  K  T  S  N  L  I  P  R  A  L  V  V  F  L  F  F  L  V  V  Y  N  L  T  A  N  L  H  N  S  *  R  D  G  R  P  S  *  C  V  I  Y  A  *  S  P  *  N  R  D  E  L  Y  I  Y  L  H  D  F  R  C  C  N  I  N  E  S  F  Y  I   : Y  *  K  H  C  *  M  S  P  R  G  F  G   : F  L  F  V  F  L  F  S  :  K  K  K  K :   L  S  F  F  L  G  D  *  Q  V  N  I  Y  I  Y  I  L  I  F  L  I  N  P  Q  K  K  Q  R  N  S  F  I  P  T  N  </second_frame>
            <third_frame>   A  E  L  S  W  K  :  T  I  S  S  *  Y  Y  H  H  S  Y  K  T  A  R  T  A   : G  F  H  S  L  R  *  R  S  S  E  T  C  C  N  G  F  *  E   : D  T  S  R  S  C  T  G  C  S  R  R  G  L  E  C  C  C  G  N  F  N  E  P  T   : G  L  I  *  K  D  I  T  S  R  F  D  S  K  S  R  G  S  A  K  L  V  I  *  F  L  E  P  S  L  F  S  S  S  F  W  L  Y  I  I  L  Q  Q  I  Y  T  I  L  R  E  M  E  D  L  L  S  V  *  F  T  P  N  P  H  K  T  E  M  N  C  I  S  T  F  M  I  L  D  A  A  I  S  M  N  H  F  I  F  :  T  K  N  T  A  K  *  A  L  G  V  L  V  :  F  F  L  F  F  Y  L  A :   K  R  K   : N  *  V  F  F  *  E  I  D  K  L  I  Y  I  Y  I  Y  *  F  F  *  *  I  H  R  K  N  N  E  I  H  L  Y  P  R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18750" stop="18769"/>
                    <exon start="19239" stop="19290"/>
                    <exon start="19369" stop="19425"/>
                    <exon start="19551" stop="19625"/>
                    <exon start="19709" stop="19714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERSLAGRLSAVDTTTTATRPLGQQASIPSDEEVQKLVAMGFEKTQVEVALAAAEGDLNVAVEILMSQQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="18171" e_stop="18244"/>
            <exon e_start="18600" e_stop="19078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.986"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="18171" e_stop="18244" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="18600" e_stop="19078" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18171" stop="18244"/>
              <exon start="18600" stop="19078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367270" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG : CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACTATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGTAAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGATTTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATC</gDNA_template>
            <first_frame> K  C  F  L  E  I  F  G  R  T  F  L  R  G  C  H  R  E  R  A  L  S  L  L  S :   R  *  Q  M  I  A  G  F  L  G  E  E  E  L  *  V  P  R  P  P  P  L  I  M  I  Q  R  Y  R  L  G  S  W  M  V  A  A  A  L  S  V  V  H  L  L  L  Q  *  L  E  S  G  A  *  L  E  G  A  R  N  R  L  L  L  H  A  K  L  L  I  L  I  Y  L  F  C  I  *  L  S  L  V  G  A  L  R  *  I  R  F  S  Y  I  F  M  *  C  *  N  C  S  P  I  E  R  F  A  V  N  K  V  F  K  L  V  D  P  V  T  K  F  K  L  Y  R  Y  G  K  E  K  L  D  F  L  Q  S  V  H  K  I  Q  F  L  *  F  F  F  L  C  I  V  S  S  G  *  S  D  F  Y  </first_frame>
            <second_frame>  S  A  F  W  K  Y  L  G  E  P  F  F  V  D  A  T  E  R  E  L  S  L  C  S   : A  G  D  R  *  *  Q  V  S  W  E  R  K  N  S  E  F  P  D  H  H  H  *  S  *  F  N  V  T  G  *  A  P  G  W  *  Q  Q  P  *  A  *  F  T  Y  C  Y  N  S  W  R  A  E  L  S  W  K  V  L  E  T  D  C  C  Y  M  L  N  C  *  Y  S  Y  I  C  S  V  F  D  Y  H  W  L  V  H  *  D  R  S  V  L  V  I  F  S  C  D  A  E  T  A  L  R  L  N  G  L  L  *  T  R  C  L  N  W  L  I  Q  *  P  S  L  S  Y  I  A  T  E  R  K  S  W  I  F  F  N  P  F  I  K  Y  N  S  Y  D  F  F  F  S  V  *  F  L  L  D  N  L  I  S  I </second_frame>
            <third_frame>   V  L  S  G  N  I  W  E  N  L  S  S  W  M  P  Q  R  E  S  S  L  S  A  Q  :  P  V  T  D  D  S  R  F  P  G  R  G  R  T  L  S  S  Q  T  T  T  T  N  H  D  S  T  L  Q  A  R  L  L  D  G  S  S  S  P  E  R  S  S  P  T  A  T  I  A  G  E  R  S  L  A  G  R  C  *  K  Q  T  V  V  T  C  *  I  V  N  T  H  I  S  V  L  Y  L  T  I  I  G  W  C  T  K  I  D  P  F  *  L  Y  F  H  V  M  L  K  L  L  S  D  *  T  V  C  C  K  Q  G  V  *  I  G  *  S  S  N  Q  V  *  V  I  S  L  R  K  G  K  A  G  F  S  S  I  R  S  *  N  T  I  P  M  I  F  F  S  L  Y  S  F  F  W  I  I  *  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18173" stop="18244"/>
                    <exon start="18600" stop="18776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSGNIWENLSSWMPQRESSLSAQPVTDDSRFPGRGRTLSSQTTTTNHDSTLQARLLDGSSSPERSSPTATIAGERSLAGRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="28851" PGL_stop="21871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28851" e_stop="28809"/>
            <exon e_start="28709" e_stop="28641"/>
            <exon e_start="28551" e_stop="28441"/>
            <exon e_start="26066" e_stop="26011"/>
            <exon e_start="25918" e_stop="25741"/>
            <exon e_start="25617" e_stop="25516"/>
            <exon e_start="25433" e_stop="25362"/>
            <exon e_start="24485" e_stop="24420"/>
            <exon e_start="24161" e_stop="24096"/>
            <exon e_start="23779" e_stop="23693"/>
            <exon e_start="23608" e_stop="23492"/>
            <exon e_start="23365" e_stop="23291"/>
            <exon e_start="23161" e_stop="23078"/>
            <exon e_start="22539" e_stop="21871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.884"/>
          <exon-intron don_prob="0.952" acc_prob="0.864" e_score="0.783"/>
          <exon-intron don_prob="0.930" acc_prob="0.956" e_score="0.946"/>
          <exon-intron don_prob="0.069" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.318" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.311" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="28851" e_stop="28809" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28808" i_stop="28710" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="0.783">
            <gDNA_exon_boundary e_start="28709" e_stop="28641" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.864">
            <gDNA_intron_boundary i_start="28640" i_stop="28552" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="0.946">
            <gDNA_exon_boundary e_start="28551" e_stop="28441" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.930" acc_prob="0.956">
            <gDNA_intron_boundary i_start="28440" i_stop="26067" i_length="2374"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="26066" e_stop="26011" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.069" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26010" i_stop="25919" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25918" e_stop="25741" e_length="178"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.937">
            <gDNA_intron_boundary i_start="25740" i_stop="25618" i_length="123"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25617" e_stop="25516" e_length="102"/>
          </exon>
          <intron i_serial="6" don_prob="0.318" acc_prob="0.983">
            <gDNA_intron_boundary i_start="25515" i_stop="25434" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="25433" e_stop="25362" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25361" i_stop="24486" i_length="876"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24420" e_length="66"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="24161" e_stop="24096" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.936" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="23779" e_stop="23693" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.788" acc_prob="0.653">
            <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="23608" e_stop="23492" e_length="117"/>
          </exon>
          <intron i_serial="11" don_prob="0.757" acc_prob="0.311">
            <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="23365" e_stop="23291" e_length="75"/>
          </exon>
          <intron i_serial="12" don_prob="0.844" acc_prob="0.927">
            <gDNA_intron_boundary i_start="23290" i_stop="23162" i_length="129"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="23161" e_stop="23078" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23077" i_stop="22540" i_length="538"/>
          </intron>
          <exon e_serial="14" e_score="0.985">
            <gDNA_exon_boundary e_start="22539" e_stop="21871" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28851" stop="28809"/>
              <exon start="28709" stop="28641"/>
              <exon start="28551" stop="28441"/>
              <exon start="26066" stop="26011"/>
              <exon start="25918" stop="25741"/>
              <exon start="25617" stop="25516"/>
              <exon start="25433" stop="25362"/>
              <exon start="24485" stop="24451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25896" stop="25741"/>
              <exon start="25617" stop="25516"/>
              <exon start="25433" stop="25362"/>
              <exon start="24485" stop="24420"/>
              <exon start="24161" stop="24096"/>
              <exon start="23779" stop="23693"/>
              <exon start="23608" stop="23492"/>
              <exon start="23365" stop="23340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24485" stop="24420"/>
              <exon start="24161" stop="24096"/>
              <exon start="23779" stop="23693"/>
              <exon start="23608" stop="23492"/>
              <exon start="23365" stop="23291"/>
              <exon start="23161" stop="23078"/>
              <exon start="22539" stop="22359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24485" stop="24420"/>
              <exon start="24161" stop="24096"/>
              <exon start="23779" stop="23693"/>
              <exon start="23608" stop="23492"/>
              <exon start="23365" stop="23291"/>
              <exon start="23161" stop="23113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23115" stop="23078"/>
              <exon start="22539" stop="21871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398474" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGGCTGGATTTGCTCCTGACCAAGAAATTGAACTTTTTGAG : GAAATAAAGTTTGAACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAG : ATTGAAGATGGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAG : CTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTT : AGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAG : ATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAG : ATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAG : GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAG : ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA : ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG : CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG : TGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAG : AGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAG : AACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCATTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGCATATGAATGATTT</gDNA_template>
            <first_frame> I  G  W  I  C  S  *  P  R  N  *  T  F  *   : G  N  K  V  *  T  F  C  H  V  *  K  T  R  Q  K  G  F  I  S  I  *  P   : D  *  R  W  G  Y  Y  M  L  S  E  E  N  F  S  *  S  *  R  T  S  P  I  S  R  C  S  F  I  Y  G  V  C  Q  K  S  P   : A  C  P  L  Q  S  T  G  K  T  E  G  G  *  F  L  S  G  V  :  S  K  K  *  Y  I  *  *  S  S  G  *  S  G  S  E  A  W  C  G  *  F  L  Q  N  *  A  Y  S  S  Q  L  L  L  T  A  T  Q  A  Q  P  H  Q  I  S  V  C  G  S  F  G  R  H  A  Y  P  L  Q  S   : D  L  R  Y  S  V  L  *  S  S  G  H  T  S  A  R  I  T  M  S  E  D  A  Q  S  C  L  P  S  F  Y  E  G  *   : D  *  N  S  E  C  K  I  A  *  A  E  Y  S  G  G  C  T  *  G  N  Q  I  K   : G  R  V  V  P  S  K  C  R  A  Q  I  T  R  G  L  L  S  Q  D  L  *   : D  L  S  A  Q  *  K  D  *  E  Y  K  *  P  I  L  D  I  A  G  R  G   : N  T  R  R  G  E  K  P  W  S  P  R  S  S  N  S  C  L  P  F  H  K  R  D  S  T  K  S  N   : A  S  A  E  F  W  R  T  F  L  S  G  H  P  *  R  *  N  F  S  G  N  *  S  A  D  S  K  E  I  A  G  L  G  *  G  V  L  *   : V  E  I  C  I  F  I  I  G  A  P  R  I  P  S  G  L  R  Y  C  I  Q  P  F  S   : E  E  R  C  L  W  C  L  G  A  V  P  W  I  G  A  C  R  *  Y  I  *  E  A  I  Y  *  S   : E  P  S  H  I  R  K  A  S  Q  D  I  Q  L  K  E  A  C  D  I  S  A  G  F  W  L  *  R  S  L  L  T  S  L  E  G  R  N  V  K  E  F  V  A  M  T  *  *  *  V  E  G  R  E  G  I  G  M  K  T  V  F  I  *  G  I  S  P  P  L  S  P  P  D  D  L  V  R  F  C  R  L  Y  V  F  P  S  I  S  F  G  E  G  D  L  F  L  F  S  L  V  R  M  C  A  A  V  S  A  L  A  F  S  Y  Y  T  A  E  G  W  F  F  *  C  C  L  L  H  S  L  F  C  I  *  D  F  G  *  R  E  C  I  A  D  I  V  V  G  C  L  L  G  M  Y  H  L  S  V  T  S  V  *  I  S  P  F  L  F  L  L  Y  L  M  S  *  E  W  G  M  D  L  Y  K  F  S  L  *  H  W  Y  M  F  S  M  L  H  F  C  L  C  C  C  Y  C  W  F  S  L  A  G  N  D  K  N  L  L  Q  L  S  I  *  M  I  </first_frame>
            <second_frame>  L  A  G  F  A  P  D  Q  E  I  E  L  F  E  :  E  I  K  F  E  P  S  V  M  C  E  R  L  D  R  K  A  S  F  R  F  S  Q  :  I  E  D  G  D  I  I  C  F  Q  K  K  T  S  P  E  V  E  E  Q  V  R  F  P  D  V  P  S  Y  M  E  Y  V  K  N  R  Q  :  L  V  H  F  R  A  L  E  K  P  K  E  D  D  F  C  L  E  L :   A  K  S  D  T  Y  D  E  V  V  D  R  V  A  Q  R  L  G  V  D  D  S  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  N  P  I  K  Y  R  S  V  D  H  L  V  D  M  L  I  H  Y  N  Q  :  I  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  C  L  K  T  L  K  V  A  F  H  H  S  T  K  D  E  :  I  E  I  L  N  V  R  L  P  K  Q  S  T  V  G  D  V  L  E  E  I  K  S  K  :  V  E  L  S  H  P  N  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  L  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  H  D  R  L  I  H  V  Y  H  F  T  K  E  T  P  Q  N  Q  M  :  Q  V  Q  N  F  G  E  P  F  F  L  V  I  H  E  G  E  T  L  A  E  I  K  V  R  I  Q  K  K  L  Q  V  S  D  E  E  F  S  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  Q  D  S  D  I  V  S  N  R  F  Q  :  R  R  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  A  D  N  T  S  K  R  P  Y  I  N  Q  :  N  R  H  T  F  E  K  P  V  K  I  Y  N  *  K  R  L  V  I  F  Q  L  G  F  G  C  S  V  H  S  S  R  A  *  K  G  E  M  *  K  S  L  *  L  *  H  D  D  K  *  K  A  E  R  G  L  A  *  K  P  F  S  F  R  G  F  H  H  L  C  L  L  L  M  I  W  S  D  F  A  G  F  M  F  S  L  R  F  R  L  G  R  E  I  C  F  S  L  V  *  L  G  C  A  L  Q  F  L  P  S  P  S  A  I  T  P  L  R  V  G  S  F  D  V  V  F  C  I  V  Y  S  A  Y  K  I  L  V  E  G  N  V  *  L  I  *  S  S  G  A  F  W  A  C  T  I  Y  L  L  L  L  Y  E  F  P  H  S  S  F  C  C  I  *  C  H  R  S  G  E  W  I  C  I  S  F  L  Y  S  I  G  I  C  F  L  C  F  I  S  V  F  V  V  V  T  V  G  L  V  W  Q  E  M  T  K  T  S  F  N  *  A  Y  E  *  F </second_frame>
            <third_frame>   W  L  D  L  L  L  T  K  K  L  N  F  L  R :   K  *  S  L  N  L  L  S  C  V  K  D  *  T  E  R  L  H  F  D  L  A  R :   L  K  M  G  I  L  Y  A  F  R  R  K  L  L  L  K  L  K  N  K  S  D  F  Q  M  F  L  H  I  W  S  M  S  K  I  A  S :   L  S  T  S  E  H  W  K  N  R  R  R  M  I  F  V  W  S   : *  Q  K  V  I  H  M  M  K  *  W  I  E  W  L  R  G  L  V  W  M  I  P  P  K  L  G  L  L  L  T  T  A  T  H  S  N  P  S  P  T  P  S  N  I  G  L  W  I  I  W  *  T  C  L  S  I  T  I  R :   S  P  I  F  C  I  M  K  F  W  T  Y  L  C  Q  N  Y  N  V  *  R  R  S  K  L  P  S  I  I  L  R  R  M  R :   L  K  F  *  M  *  D  C  L  S  R  V  Q  W  G  M  Y  L  R  K  S  N  Q  R :   *  S  C  P  I  Q  M  Q  S  S  D  Y  S  R  S  S  I  T  R  F  I  R :   S  F  R  S  V  K  R  L  R  I  *  M  T  N  I  G  H  C  G  Q  R  K :   Y  Q  K  R  R  K  T  L  V  P  T  I  V  *  F  M  F  T  I  S  Q  K  R  L  H  K  I  K  C :   K  C  R  I  L  E  N  L  S  F  W  S  S  M  K  V  K  L  *  R  K  L  K  C  G  F  K  R  N  C  R  S  R  M  R  S  S  L  S :   G  N  L  H  F  Y  H  W  G  A  Q  N  T  F  R  T  Q  I  L  Y  P  T  V  F  R :   G  E  M  F  M  V  L  G  S  S  T  L  D  W  S  M  Q  I  I  H  L  R  G  H  I  L  I  R :   T  V  T  H  S  K  S  Q  S  R  Y  T  T  E  R  G  L  *  Y  F  S  W  V  L  V  V  A  F  T  P  H  E  L  R  R  E  K  C  K  R  V  C  S  Y  D  M  M  I  S  R  R  Q  R  G  D  W  H  E  N  R  F  H  L  G  D  F  T  T  F  V  S  S  *  *  F  G  Q  I  L  Q  A  L  C  F  P  F  D  F  V  W  G  G  R  F  V  S  L  *  F  S  *  D  V  R  C  S  F  C  P  R  L  Q  L  L  H  R  *  G  L  V  L  L  M  L  S  S  A  *  F  I  L  H  I  R  F  W  L  K  G  M  Y  S  *  Y  S  R  R  V  P  S  G  H  V  P  S  I  C  Y  F  C  M  N  F  P  I  P  L  F  V  V  F  N  V  I  G  V  G  N  G  S  V  *  V  F  S  I  A  L  V  Y  V  F  Y  A  S  F  L  S  L  L  L  L  L  L  V  *  F  G  R  K  *  Q  K  P  P  S  I  E  H  M  N  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28850" stop="28809"/>
                    <exon start="28709" stop="28641"/>
                    <exon start="28551" stop="28441"/>
                    <exon start="26066" stop="26011"/>
                    <exon start="25918" stop="25741"/>
                    <exon start="25617" stop="25516"/>
                    <exon start="25433" stop="25362"/>
                    <exon start="24485" stop="24420"/>
                    <exon start="24161" stop="24096"/>
                    <exon start="23779" stop="23693"/>
                    <exon start="23608" stop="23492"/>
                    <exon start="23365" stop="23291"/>
                    <exon start="23161" stop="23078"/>
                    <exon start="22539" stop="22498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1164</number_coding_nucleotides>
                  <number_encoded_amino_acids>388</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LAGFAPDQEIELFEEIKFEPSVMCERLDRKASFRFSQIEDGDIICFQKKTSPEVEEQVRFPDVPSYMEYVKNRQLVHFRALEKPKEDDFCLELAKSDTYDEVVDRVAQRLGVDDSSKIRLTPHNCYSQQPKPNPIKYRSVDHLVDMLIHYNQISDILYYEVLDIPLPELQCLKTLKVAFHHSTKDEIEILNVRLPKQSTVGDVLEEIKSKVELSHPNAELRLLEVFYHKIYKIFPLSEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETPQNQMQVQNFGEPFFLVIHEGETLAEIKVRIQKKLQVSDEEFSKWKFAFLSLGRPEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHADNTSKRPYINQNRHTFEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38742" PGL_stop="36442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38742" e_stop="38693"/>
            <exon e_start="37285" e_stop="37211"/>
            <exon e_start="37034" e_stop="36956"/>
            <exon e_start="36892" e_stop="36746"/>
            <exon e_start="36663" e_stop="36583"/>
            <exon e_start="36509" e_stop="36442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="0.980"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38742" e_stop="38693" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.963">
            <gDNA_intron_boundary i_start="38692" i_stop="37286" i_length="1407"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37285" e_stop="37211" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37210" i_stop="37035" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37034" e_stop="36956" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.977">
            <gDNA_intron_boundary i_start="36955" i_stop="36893" i_length="63"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="36892" e_stop="36746" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36745" i_stop="36664" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="36663" e_stop="36583" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36582" i_stop="36510" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="36509" e_stop="36442" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38742" stop="38693"/>
              <exon start="37285" stop="37211"/>
              <exon start="37034" stop="36956"/>
              <exon start="36892" stop="36746"/>
              <exon start="36663" stop="36583"/>
              <exon start="36509" stop="36442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAG : TGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATG : GTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAG : TTGCCACAGACAAATCCCGGCTTCAATAACACTCCCTTCAAGTTTACTAAATATTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATCGCGGAACACTTAAGG : ATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACAAAGCACAGGCCCACCTGTATACAATCATCAAG : GTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGTTGATCATGA</gDNA_template>
            <first_frame> L  S  P  D  A  D  R  S  V  R  N  L  Y  T  L  H  S :   V  L  V  H  S  G  G  V  H  G  G  H  Y  Y  A  F  I  R  P  T  L  S  D  Q  W :   Y  K  F  D  D  E  R  V  T  K  E  D  N  K  R  A  L  E  E  Q  Y  G  G  E  E  E  :  L  P  Q  T  N  P  G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  S  D  K  D  K  I  I  C  D  V  G  E  K  D  I  A  E  H  L  R  :  I  R  L  K  K  E  Q  E  E  K  E  D  K  R  R  Y  K  A  Q  A  H  L  Y  T  I  I  K  :  V  A  R  D  E  D  L  R  E  Q  I  G  K  E  I  Y  F  D  L  V  D  H   </first_frame>
            <second_frame>  C  L  L  M  Q  I  G  V  Y  G  I  S  I  H  F  I   : V  C  W  F  I  A  A  V  C  M  V  D  I  I  M  L  S  S  G  Q  H  C  Q  I  N   : G  I  S  L  M  M  N  G  *  Q  K  K  T  I  R  G  L  *  R  N  N  M  V  E  K  R  S :   C  H  R  Q  I  P  A  S  I  T  L  P  S  S  L  L  N  I  P  M  L  T  C  L  F  I  Y  V  R  V  T  R  I  K  *  S  V  M  L  V  R  R  T  S  R  N  T  *  G :   *  G  *  R  K  N  K  K  K  R  R  T  R  D  D  T  K  H  R  P  T  C  I  Q  S  S  R :   L  H  G  M  R  I  L  E  N  R  L  V  R  R  Y  I  L  I  L  L  I  M  </second_frame>
            <third_frame>   V  S  *  C  R  *  E  C  T  E  S  L  Y  T  S  *  :  C  V  G  S  *  R  R  C  A  W  W  T  L  L  C  F  H  Q  A  N  T  V  R  S  M  :  V  *  V  *  *  *  T  G  D  K  R  R  Q  *  E  G  S  R  G  T  I  W  W  R  R  G   : V  A  T  D  K  S  R  L  Q  *  H  S  L  Q  V  Y  *  I  F  Q  C  L  H  A  C  L  Y  T  *  E  *  Q  G  *  N  N  L  *  C  W  *  E  G  H  R  G  T  L  K   : D  K  V  E  E  R  T  R  R  K  G  G  Q  E  T  I  Q  S  T  G  P  P  V  Y  N  H  Q   : G  C  T  G  *  G  S  *  R  T  D  W  *  G  D  I  F  *  S  C  *  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38742" stop="38693"/>
                    <exon start="37285" stop="37211"/>
                    <exon start="37034" stop="36956"/>
                    <exon start="36892" stop="36746"/>
                    <exon start="36663" stop="36583"/>
                    <exon start="36509" stop="36444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICDVGEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLREQIGKEIYFDLVDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44624" PGL_stop="41880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44624" e_stop="44470"/>
            <exon e_start="43773" e_stop="43686"/>
            <exon e_start="43557" e_stop="43410"/>
            <exon e_start="43315" e_stop="43158"/>
            <exon e_start="42034" e_stop="41880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.833" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44624" e_stop="44470" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.833">
            <gDNA_intron_boundary i_start="44469" i_stop="43774" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43773" e_stop="43686" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43685" i_stop="43558" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43557" e_stop="43410" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.844" acc_prob="0.979">
            <gDNA_intron_boundary i_start="43409" i_stop="43316" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43315" e_stop="43158" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.625" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43157" i_stop="42035" i_length="1123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42034" e_stop="41880" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44624" stop="44470"/>
              <exon start="43773" stop="43686"/>
              <exon start="43557" stop="43410"/>
              <exon start="43315" stop="43158"/>
              <exon start="42034" stop="41880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGAT : CAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAG : TGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATG : GAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAG : AGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGG</gDNA_template>
            <first_frame> T  P  P  S  E  L  I  S  S  Y  T  P  H  P  H  P  P  H  P  T  P  Y  S  P  R  P  H  R  R  *  L  V  D  R  T  V  T  L  Y  P  Q  T  *  P  C  *  I  L  N  R  W  I :   S  R  K  T  R  R  C  L  C  H  I  L  N  *  L  K  V  L  S  L  *  L  K  G  L  S  Q  W  K  :  W  Q  L  L  R  M  L  L  L  G  R  T  K  P  W  T  S  L  R  L  P  G  L  H  G  Q  L  M  N  S  L  G  Y  L  *  R  S  Y  I  L  S  L  L  L  L  V  V  I  N   : G  E  C  L  Y  F  Q  K  E  T  T  W  S  V  C  Q  C  I  *  M  W  Q  I  Q  L  H  C  H  M  G  G  T  D  M  H  S  S  A  *  Q  L  *  I  R  *  T  P  N  I  Q  *  K  K  :  R  R  S  T  S  L  T  K  E  R  V  I  G  A  S  H  H  S  C  F  *  V  I  F  M  I  P  I  R  D  I  L  *  M  I  K  L  L  L  K  L  M  L  L  *  G  R  S  L  I  T   </first_frame>
            <second_frame>  P  P  H  L  N  S  F  L  H  I  P  P  T  P  T  H  P  T  L  P  P  T  H  L  A  H  I  A  G  D  *  L  I  G  R  *  L  F  I  L  K  H  D  H  A  E  S  S  T  A  G   : S  A  G  R  R  G  D  A  C  A  T  F  *  I  S  *  R  S  S  A  F  S  *  R  A  S  A  N  G  S :   G  S  F  *  E  C  Y  Y  W  G  E  P  S  R  G  R  A  S  G  F  P  V  Y  M  D  N  *  *  I  L  S  V  I  C  E  E  A  I  F  *  A  F  C  C  W  *  L  *  M  :  E  S  A  Y  I  S  K  R  K  Q  R  G  V  F  V  N  V  F  R  C  G  R  F  S  Y  I  A  I  W  V  E  Q  I  C  T  V  Q  L  N  S  C  K  S  D  K  P  Q  I  F  S  E  K  R :   D  A  A  P  V  *  P  K  R  E  *  L  G  L  H  I  I  H  A  S  K  *  S  L  *  S  Q  *  G  I  S  C  K  *  *  S  C  Y  *  S  *  C  C  C  K  E  G  H  *  L  L  </second_frame>
            <third_frame>   P  P  I  *  T  H  F  F  I  Y  P  P  P  P  P  T  P  P  Y  P  L  L  T  S  P  T  S  P  V  I  S  *  S  D  G  D  S  L  S  S  N  M  T  M  L  N  P  Q  P  L  D  :  Q  Q  E  D  E  E  M  L  V  P  H  S  E  L  V  E  G  P  Q  P  L  V  E  G  P  Q  P  M  E   : V  A  A  S  E  N  A  T  T  G  E  N  Q  A  V  D  E  P  Q  A  S  R  F  T  W  T  I  D  E  F  S  R  L  S  V  K  K  L  Y  S  E  P  F  V  V  G  S  Y  K  W :   R  V  L  I  F  P  K  G  N  N  V  E  C  L  S  M  Y  L  D  V  A  D  S  A  T  L  P  Y  G  W  N  R  Y  A  Q  F  S  L  T  V  V  N  Q  I  N  P  K  Y  S  V  K  K   : E  T  Q  H  Q  F  N  Q  R  E  S  D  W  G  F  T  S  F  M  L  L  S  D  L  Y  D  P  N  K  G  Y  L  V  N  D  K  V  V  I  E  A  D  V  A  V  R  K  V  I  D  Y  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44526" stop="44470"/>
                    <exon start="43773" stop="43686"/>
                    <exon start="43557" stop="43410"/>
                    <exon start="43315" stop="43158"/>
                    <exon start="42034" stop="41880"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDGDSLSSNMTMLNPQPLDQQEDEEMLVPHSELVEGPQPLVEGPQPMEVAASENATTGENQAVDEPQASRFTWTIDEFSRLSVKKLYSEPFVVGSYKWRVLIFPKGNNVECLSMYLDVADSATLPYGWNRYAQFSLTVVNQINPKYSVKKETQHQFNQRESDWGFTSFMLLSDLYDPNKGYLVNDKVVIEADVAVRKVIDYW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50925" PGL_stop="52334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50925" e_stop="51071"/>
            <exon e_start="51749" e_stop="52334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50925" e_stop="51071" e_length="147"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51749" e_stop="52334" e_length="586"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50925" stop="51071"/>
              <exon start="51749" stop="52334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701578" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50933" stop="51071"/>
              <exon start="51749" stop="52317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50941" stop="51071"/>
              <exon start="51749" stop="52324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG : GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGCAAGGAGAAAA</gDNA_template>
            <first_frame> S  L  S  I  S  L  F  S  F  F  S  L  G  F  L  D  F  F  N  S  P  G  S  *  N  D  N  F  H  F  F  P  G  E  F  H  L  R  F  S  A  T  A  I  P  Y  D  F  Q  :  E  C  V  F  C  I  A  T  E  G  R  R  N  S  S  Y  V  K  S  R  G  I  H  I  Y  I  I  I  L  S  K  M  E  G  L  R  A  C  C  T  G  L  I  V  F  *  F  V  V  F  L  L  F  F  P  G  F  L  L  *  F  Y  L  R  N  Q  F  L  N  *  G  W  T  I  D  W  M  C  N  R  I  W  I  L  K  I  R  P  R  R  P  A  R  S  T  V  V  T  A  G  A  A  V  V  L  Q  *  T  G  P  I  Q  G  L  G  S  D  L  *  S  E  N  L  M  N  I  M  R  I  S  L  *  S  Q  A  L  S  Y  L  *  M  L  V  L  K  L  K  M  N  V  Q  H  L  G  K  W  *  V  S  N  N  T  R  F  R  I  *  V  L  S  W  R  K  N  E  M  R  L  P  R  Q  R  M  R  P  C  P  *  F  *  G  C  K  E  K  </first_frame>
            <second_frame>  L  S  L  S  L  Y  F  H  F  S  P  L  V  F  S  I  S  S  I  L  R  E  A  R  T  I  I  S  I  F  F  R  E  N  F  T  S  V  S  Q  L  Q  L  Y  R  M  I  F  R :   N  V  Y  S  V  L  Q  L  R  E  G  G  I  H  P  M  *  S  R  G  V  Y  I  Y  T  *  S  F  Y  R  R  W  R  D  *  E  L  V  V  Q  D  *  S  S  F  N  L  W  Y  F  C  Y  F  F  L  V  F  F  Y  D  S  I  *  G  I  N  F  *  I  E  A  G  R  L  I  G  C  A  I  E  Y  G  F  S  K  F  A  P  D  D  Q  P  G  Q  L  L  L  L  R  V  Q  Q  L  F  C  N  E  Q  V  L  F  R  D  L  A  P  I  C  E  A  K  I  *  *  I  *  *  E  *  V  Y  D  P  R  L  C  L  T  S  E  C  S  Y  *  N  *  K  *  M  Y  S  T  *  G  N  G  K  *  A  T  T  H  D  S  G  F  R  C  *  V  G  G  R  T  K  C  V  F  L  G  S  E  *  G  H  V  H  D  F  E  A  A  R  R  K </second_frame>
            <third_frame>   S  L  Y  L  S  I  F  I  F  L  P  W  F  S  R  F  L  Q  F  S  G  K  L  E  R  *  F  P  F  F  S  G  R  I  S  P  P  F  L  S  Y  S  Y  T  V  *  F  S   : G  M  C  I  L  Y  C  N  *  G  K  E  E  F  I  L  C  E  V  E  G  Y  T  Y  I  H  N  H  F  I  E  D  G  G  I  E  S  L  L  Y  R  I  N  R  L  L  I  C  G  I  S  V  I  F  S  W  F  S  F  M  I  L  F  E  E  S  I  S  E  L  R  L  D  D  *  L  D  V  Q  *  N  M  D  S  Q  N  S  P  P  T  T  S  Q  V  N  C  C  Y  C  G  C  S  S  C  S  A  M  N  R  S  Y  S  G  T  W  L  R  S  V  K  R  K  F  D  E  Y  N  E  N  K  F  M  I  P  G  F  V  L  P  L  N  A  R  I  E  I  E  N  E  C  T  A  L  R  E  M  V  S  K  Q  Q  H  T  I  Q  D  L  G  A  E  L  E  E  E  R  N  A  S  S  S  A  A  N  E  A  M  S  M  I  L  R  L  Q  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51988" stop="52332"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMDSQNSPPTTSQVNCCYCGCSSCSAMNRSYSGTWLRSVKRKFDEYNENKFMIPGFVLPLNARIEIENECTALREMVSKQQHTIQDLGAELEEERNASSSAANEAMSMILRLQGE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50997" stop="51071"/>
                    <exon start="51749" stop="51886"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDNFHFFPGEFHLRFSATAIPYDFQECVFCIATEGRRNSSYVKSRGIHIYIIILSKMEGLRACCTGLIVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52579" PGL_stop="53391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52579" e_stop="53391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="52579" e_stop="53391" e_length="813"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52579" stop="53391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52580" stop="53162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTACACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAGAAGACATCTGTAATTGGGAGCTTTTCATGCATGTCTATATTCAAG</gDNA_template>
            <first_frame> E  T  I  N  G  Q  F  E  V  P  P  F  D  Y  P  P  L  K  C  T  I  N  E  N  Q  V  Y  T  E  F  D  N  D  I  V  D  V  E  K  Y  A  F  E  E  T  P  R  S  C  D  Q  L  R  D  L  E  H  R  I  N  Q  L  E  R  T  P  R  S  T  D  G  D  L  F  K  N  N  I  L  E  K  V  I  V  G  H  S  P  R  R  N  R  H  L  R  K  F  S  T  D  S  V  G  S  P  F  I  T  N  K  E  I  N  S  D  F  I  S  D  S  P  R  F  G  G  S  I  R  K  T  E  Y  S  Q  T  E  E  R  S  N  L  R  K  V  D  N  S  S  E  I  G  D  D  M  S  D  R  V  Y  T  I  D  S  V  H  Q  G  A  G  Y  N  G  V  S  E  L  K  S  S  A  G  M  V  D  D  Y  T  P  R  D  S  L  N  N  T  D  F  G  D  P  E  V  T  K  L  Y  F  R  L  Q  A  L  E  A  D  R  E  S  M  R  Q  A  M  I  A  M  R  T  D  K  A  Q  V  I  L  L  K  E  I  A  Q  Q  L  C  K  E  M  S  P  A  V  R  K  P  A  K  K  T  S  V  I  G  S  F  S  C  M  S  I  F  K </first_frame>
            <second_frame>  R  L  S  M  G  N  S  K  F  L  P  S  I  T  L  H  *  N  A  L  L  M  K  I  K  Y  T  Q  N  L  I  M  T  L  L  M  L  R  N  M  H  L  K  R  P  H  V  R  V  T  N  C  G  I  W  S  I  G  S  I  N  W  R  G  R  Q  E  A  L  M  G  I  F  S  R  T  T  Y  L  K  K  *  *  L  V  I  P  Q  G  G  I  D  I  L  E  S  F  Q  L  I  V  *  D  L  P  S  L  Q  I  K  K  L  T  Q  I  S  S  Q  I  L  Q  D  L  V  G  V  L  E  K  Q  N  I  H  K  Q  K  S  V  Q  T  *  G  R  W  I  I  H  Q  K  L  E  M  T  *  V  T  E  F  T  Q  L  I  L  Y  I  R  G  L  D  I  M  V  C  Q  N  S  S  L  Q  L  E  W  L  T  T  I  P  Q  G  I  H  *  I  T  Q  I  L  E  I  Q  R  S  Q  S  C  I  L  G  S  R  H  L  R  L  T  G  N  Q  *  D  R  L  *  L  L  C  G  L  I  K  H  R  *  Y  C  S  R  R  L  L  S  S  Y  A  K  R  C  L  Q  P  *  E  N  L  Q  R  R  H  L  *  L  G  A  F  H  A  C  L  Y  S   </second_frame>
            <third_frame>   D  Y  Q  W  A  I  R  S  S  S  L  R  L  P  S  I  E  M  H  Y  *  *  K  S  S  I  H  R  I  *  *  *  H  C  *  C  *  E  I  C  I  *  R  D  P  T  F  V  *  P  I  A  G  F  G  A  *  D  Q  S  I  G  E  D  A  K  K  H  *  W  G  S  F  Q  E  Q  H  T  *  K  S  D  S  W  S  F  P  K  E  E  *  T  S  *  K  V  F  N  *  *  C  R  I  S  L  H  Y  K  *  R  N  *  L  R  F  H  L  R  F  S  K  I  W  W  E  Y  *  K  N  R  I  F  T  N  R  R  A  F  K  L  E  E  G  G  *  F  I  R  N  W  R  *  H  E  *  P  S  L  H  N  *  F  C  T  S  G  G  W  I  *  W  C  V  R  T  Q  V  F  S  W  N  G  *  R  L  Y  P  K  G  F  I  K  *  H  R  F  W  R  S  R  G  H  K  V  V  F  *  A  P  G  T  *  G  *  P  G  I  N  E  T  G  Y  D  C  Y  A  D  *  *  S  T  G  D  I  A  Q  G  D  C  S  A  V  M  Q  R  D  V  S  S  R  E  K  T  C  K  E  D  I  C  N  W  E  L  F  M  H  V  Y  I  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52579" stop="53391"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETINGQFEVPPFDYPPLKCTINENQVYTEFDNDIVDVEKYAFEETPRSCDQLRDLEHRINQLERTPRSTDGDLFKNNILEKVIVGHSPRRNRHLRKFSTDSVGSPFITNKEINSDFISDSPRFGGSIRKTEYSQTEERSNLRKVDNSSEIGDDMSDRVYTIDSVHQGAGYNGVSELKSSAGMVDDYTPRDSLNNTDFGDPEVTKLYFRLQALEADRESMRQAMIAMRTDKAQVILLKEIAQQLCKEMSPAVRKPAKKTSVIGSFSCMSIFK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="57143" PGL_stop="58979"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57143" e_stop="57775"/>
            <exon e_start="58807" e_stop="58979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57143" e_stop="57775" e_length="633"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57776" i_stop="58806" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58807" e_stop="58979" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57143" stop="57775"/>
              <exon start="58807" stop="58979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704501" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAG : GAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGC</gDNA_template>
            <first_frame> A  G  F  V  R  R  V  F  G  E  L  A  W  I  G  E  M  E  *  G  L  S  C  *  E  M  W  G  C  E  I  F  C  W  A  G  G  N  E  T  *  R  L  L  *  V  L  *  S  S  E  G  R  K  A  L  V  F  V  *  P  K  V  C  G  E  N  S  S  I  R  K  G  L  *  C  P  N  V  L  Q  *  G  F  V  *  C  F  G  *  *  E  A  R  L  *  V  D  Y  N  W  T  C  R  V  W  L  V  I  S  H  R  S  K  F  Y  L  C  L  E  C  G  N  Q  R  I  Q  E  M  D  I  I  S  P  G  C  G  A  T  R  G  S  S  K  P  *  R  C  R  S  S  K  S  C  F  N  H  R  M  V  H  E  L  L  Q  R  N  Q  E  L  E  K  E  T  Y  R  M  Y  L  Q  G  G  *  S  Y  F  C  T  *  W  M  V  A  F  G  H  Q  F  R  G  F  N  C  H  Y  T  E  L  R  *  Q  :  E  E  F  S  E  C  F  G  V  P  K  K  A  K  C  L  H  S  C  V  W  N  K  R  Q  S  Q  F  A  R  Q  I  *  E  C  H  R  S  T  S  S  W  Y  Y  *  *  V  D  S  E  S  R  G  E  K  G  A   </first_frame>
            <second_frame>  P  V  L  L  E  G  C  L  E  N  W  P  G  L  E  K  W  N  R  D  Y  L  V  K  K  C  G  D  V  K  F  S  V  G  P  V  E  M  K  L  E  D  Y  F  K  Y  S  D  Q  V  R  E  E  R  P  L  Y  L  F  D  P  K  F  A  E  K  I  P  Q  L  G  K  D  Y  D  V  P  M  Y  F  N  E  D  L  F  S  V  L  G  N  E  R  P  D  Y  R  W  I  I  I  G  P  A  G  S  G  S  S  F  H  I  D  P  N  S  T  S  A  W  N  A  V  T  K  G  S  K  K  W  I  L  F  P  P  D  V  V  P  P  G  V  H  P  S  P  D  G  A  E  V  A  S  P  V  S  I  I  E  W  F  M  N  F  Y  N  A  T  K  N  W  K  K  R  P  I  E  C  I  C  K  A  G  E  V  I  F  V  P  N  G  W  W  H  L  V  I  N  L  E  D  S  I  A  I  T  Q  N  F  V  S  R :   R  N  L  V  N  V  L  E  F  L  K  R  P  N  A  C  T  L  V  S  G  T  S  D  R  V  N  L  H  D  K  F  K  N  A  I  E  A  H  L  P  G  T  I  D  E  L  T  L  K  A  E  E  K  K  A  Q  </second_frame>
            <third_frame>   R  F  C  *  K  G  V  W  R  I  G  L  D  W  R  N  G  I  G  I  I  L  L  R  N  V  G  M  *  N  F  L  L  G  R  W  K  *  N  L  K  T  T  L  S  T  L  I  K  *  G  K  K  G  P  C  I  C  L  T  Q  S  L  R  R  K  F  L  N  *  E  R  I  M  M  S  Q  C  T  S  M  R  I  C  L  V  F  W  V  M  R  G  Q  I  I  G  G  L  *  L  D  L  Q  G  L  A  R  H  F  T  S  I  Q  I  L  P  L  L  G  M  R  *  P  K  D  P  R  N  G  Y  Y  F  P  R  M  W  C  H  Q  G  F  I  Q  A  L  T  V  Q  K  *  Q  V  L  F  Q  S  *  N  G  S  *  T  F  T  T  Q  P  R  I  G  K  R  D  L  S  N  V  S  A  R  R  V  K  L  F  L  Y  L  M  D  G  G  I  W  S  S  I  *  R  I  Q  L  P  L  H  R  T  S  L  A   : G  G  I  *  *  M  F  W  S  S  *  K  G  Q  M  L  A  L  L  C  L  E  Q  A  T  E  S  I  C  T  T  N  L  R  M  P  S  K  H  I  F  L  V  L  L  M  S  *  L  *  K  P  R  R  K  R  R  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57144" stop="57775"/>
                    <exon start="58807" stop="58978"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLLEGCLENWPGLEKWNRDYLVKKCGDVKFSVGPVEMKLEDYFKYSDQVREERPLYLFDPKFAEKIPQLGKDYDVPMYFNEDLFSVLGNERPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVTKGSKKWILFPPDVVPPGVHPSPDGAEVASPVSIIEWFMNFYNATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRRNLVNVLEFLKRPNACTLVSGTSDRVNLHDKFKNAIEAHLPGTIDELTLKAEEKKAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="71203" PGL_stop="66055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71162" e_stop="70263"/>
            <exon e_start="69834" e_stop="69628"/>
            <exon e_start="69537" e_stop="69438"/>
            <exon e_start="69046" e_stop="68964"/>
            <exon e_start="68876" e_stop="68820"/>
            <exon e_start="68739" e_stop="68587"/>
            <exon e_start="67954" e_stop="67876"/>
            <exon e_start="67736" e_stop="67588"/>
            <exon e_start="67509" e_stop="67375"/>
            <exon e_start="67268" e_stop="67155"/>
            <exon e_start="67006" e_stop="66896"/>
            <exon e_start="66803" e_stop="66695"/>
            <exon e_start="66264" e_stop="66055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="0.993"/>
          <exon-intron don_prob="0.357" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.843" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="71162" e_stop="70263" e_length="900"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69834" e_stop="69628" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.357" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69537" e_stop="69438" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.883">
            <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="68964" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68876" e_stop="68820" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="0.987">
            <gDNA_exon_boundary e_start="68739" e_stop="68587" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="67954" e_stop="67876" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.843" acc_prob="0.918">
            <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="67588" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67509" e_stop="67375" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67268" e_stop="67155" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67006" e_stop="66896" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="0.982">
            <gDNA_exon_boundary e_start="66803" e_stop="66695" e_length="109"/>
          </exon>
          <intron i_serial="12" don_prob="0.074" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430"/>
          </intron>
          <exon e_serial="13" e_score="0.952">
            <gDNA_exon_boundary e_start="66264" e_stop="66055" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71162" stop="70275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71156" stop="70698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71122" stop="70686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71106" stop="70562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70551" stop="70263"/>
              <exon start="69834" stop="69628"/>
              <exon start="69537" stop="69500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69681" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68700" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66985" stop="66896"/>
              <exon start="66803" stop="66695"/>
              <exon start="66264" stop="66055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205443" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG : GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG : ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG : CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG : TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG : GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT : GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG : GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG : GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG : GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG : GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT : GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG : GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTT</gDNA_template>
            <first_frame> Q  G  K  N  P  S  L  C  S  Y  P  P  H  Q  N  P  P  K  Y  F  S  H  F  A  Q  S  S  I  *  P  K  N  C  Q  D  S  I  F  I  V  V  G  V  C  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  V  K  S  C  Q  D  S  I  F  V  V  Y  C  V  C  N  L  G  F  P  A  I  *  R  K  K  D  S  I  F  L  I  Y  Q  Y  F  G  S  C  R  S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G  V  D  K  A  K  G  R  R  G  G  T  V  S  N  L  K  A  V  V  D  V  D  K  R  V  E  S  Y  G  S  S  D  V  E  G  N  E  S  G  S  Y  D  A  I  V  I  G  S  G  I  G  G  L  V  A  A  T  Q  L  A  V  K  G  A  K  V  L  V  L  E  K  Y  V  I  P  G  G  S  S  G  F  Y  E  R  D  G  Y  K  F  D  V  G  S  S  V  M  F  G  F  S  D  K  :  G  N  L  N  L  I  T  Q  A  L  A  A  V  G  R  K  L  E  V  I  P  D  P  T  T  V  H  F  H  L  P  N  D  L  S  V  R  I  H  R  E  Y  D  D  F  I  E  E  L  V  S  K  F  P  H  E  K  E  G  I  I  K  F  Y  S  E  C  W  K  :  I  F  N  S  L  N  S  L  E  L  K  S  L  E  E  P  I  Y  L  F  G  Q  F  F  K  K  P  L  E  C  L  T  L   : A  Y  Y  L  P  Q  N  A  G  S  I  A  R  K  Y  I  R  D  P  G  L  L  S  F  I  D  A  E  :  C  F  I  V  S  T  V  N  A  L  Q  T  P  M  I  N  A  S  M  :  V  L  C  D  R  H  F  G  G  I  N  Y  P  V  G  G  V  G  E  I  A  K  S  L  A  K  G  L  D  D  H  G  S  Q  I  L  Y  R  A  N  V  T  S  I  I  L  D  N  G  K  A  :  V  G  V  K  L  S  D  G  R  K  F  Y  A  K  T  I  V  S  N  A  T  R  W  D  T  F   : G  K  L  L  K  A  E  N  L  P  K  E  E  E  N  F  Q  K  A  Y  V  K  A  P  S  F  L  S  I  H  M  G  V  K  A  D  V  L  P  P  D  T  D  C  H  H  F  V  L  E  :  D  D  W  T  N  L  E  K  P  Y  G  S  I  F  L  S  I  P  T  V  L  D  S  S  L  A  P  E  G  H  H  I  L  H  I  F  T  T  S  S  I  E  D  W  E  :  G  L  S  P  K  D  Y  E  A  K  K  E  V  V  A  E  R  I  I  S  R  L  E  K  T  L  F  P  G  L  K  S  S  I  L  F  K  E  :  V  G  T  P  K  T  H  R  R  Y  L  A  R  D  S  G  T  Y  G  P  M  P  R  G  T  P  K  G  L  L  G  M  P  F  N  T  T  :  A  I  D  G  L  Y  C  V  G  D  S  C  F  P  G  Q  G  V  I  A  V  A  F  S  G  V  M  C  A  H  R  V  A  A  D  L   : G  F  E  K  K  S  D  V  L  D  S  A  L  L  R  L  L  G  W  L  R  T  L  A  *  Y  L  L  V  K  L  K  R  N  I  *  H  K  K  R  K  F  I  M  Y  L  L  F  L  Y  I  N  K  L  E  N  E  V  P  I  E  V  P  P  V  *  K  S  Q  I  </first_frame>
            <second_frame>  K  G  R  T  L  H  F  A  H  T  H  L  I  K  I  H  L  N  T  S  L  T  L  L  N  H  L  Y  S  L  R  I  V  K  I  P  F  L  *  L  L  V  S  V  I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  R  *  R  V  V  K  I  P  F  L  *  F  I  V  F  V  I  L  G  F  Q  Q  F  K  E  K  K  I  Q  S  F  *  F  I  S  I  L  A  A  A  E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G  G  W  T  R  L  R  E  E  E  G  V  L  F  P  I  *  K  Q  L  *  M  *  T  K  E  W  R  A  M  A  V  V  M  *  K  E  M  R  V  A  A  M  M  P  L  L  *  V  Q  E  *  V  D  W  W  Q  R  R  S  W  R  L  R  E  L  R  F  *  F  W  R  S  M  L  F  L  V  E  A  L  A  F  T  R  G  M  V  I  S  L  M  L  V  H  Q  *  C  L  D  S  V  I  R :   E  T  S  I  *  L  L  K  H  W  Q  Q  *  D  V  N  *  K  L  Y  L  T  Q  Q  L  Y  I  S  T  C  Q  M  T  F  L  F  V  Y  T  E  S  M  M  T  S  L  K  S  L  *  V  N  F  H  M  K  R  K  G  L  S  N  F  T  V  N  A  G  R :   S  L  I  L  *  I  H  W  N  *  S  L  W  R  N  P  S  T  F  L  A  S  S  L  R  S  P  L  N  A  *  L  L  :  P  T  I  C  P  R  M  L  V  A  S  L  G  S  I  *  E  I  L  G  C  C  L  L  *  M  Q  S :   A  L  S  *  V  Q  L  M  H  Y  K  H  Q  *  S  M  Q  A  W :   F  Y  V  T  D  I  L  A  E  S  T  T  P  L  V  E  L  A  R  S  P  N  P  *  Q  K  A  W  M  I  T  E  V  R  Y  F  I  G  Q  M  L  Q  V  S  F  W  T  M  A  K  L :   W  E  *  S  F  L  T  G  G  S  F  M  L  K  P  *  Y  R  M  L  P  D  G  I  L  L  :  E  S  F  *  K  L  R  I  C  Q  K  K  K  K  I  S  R  K  L  M  *  K  H  L  L  F  F  L  F  I  W  E  L  K  Q  M  Y  S  H  Q  T  Q  I  V  T  I  L  S  S  R :   M  I  G  Q  I  W  R  N  H  M  E  V  Y  S  *  V  F  Q  Q  F  L  I  P  H  W  P  Q  K  D  T  I  F  F  T  F  L  Q  H  R  A  L  K  I  G  R :   D  S  L  R  K  T  M  K  R  R  K  R  L  L  L  K  G  L  *  A  D  L  K  K  H  S  S  Q  G  L  S  H  L  F  S  L  R  R :   W  E  L  Q  R  P  T  D  D  T  L  L  V  I  V  V  P  M  D  Q  C  H  A  E  H  L  R  D  S  W  E  C  L  S  I  P  L :   L  *  M  V  Y  I  V  L  A  I  V  A  S  Q  D  K  V  L  *  L  *  P  F  Q  E  *  C  A  L  I  V  L  Q  L  T  *  :  G  L  K  K  N  Q  M  C  W  T  V  L  F  L  D  Y  L  V  G  *  G  H  *  H  D  I  Y  L  L  S  *  K  E  T  F  D  T  K  K  E  S  S  L  C  I  Y  F  F  F  I  S  I  N  W  K  M  R  F  Q  L  R  F  L  Q  Y  R  N  H  R  F </second_frame>
            <third_frame>   R  E  E  P  F  T  L  L  I  P  T  S  S  K  S  T  *  I  L  L  S  L  C  S  I  I  Y  I  A  *  E  L  S  R  F  H  F  Y  S  C  W  C  L  *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R  G  K  E  L  S  R  F  H  F  C  S  L  L  C  L  *  S  W  V  S  S  N  L  K  K  K  R  F  N  L  F  N  L  S  V  F  W  Q  L  Q  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  G  G  Q  G  *  G  K  K  R  G  Y  C  F  Q  F  E  S  S  C  R  C  R  Q  K  S  G  E  L  W  Q  *  *  C  R  R  K  *  E  W  Q  L  *  C  H  C  Y  R  F  R  N  R  W  I  G  G  S  D  A  A  G  G  *  G  S  *  G  F  S  S  G  E  V  C  Y  S  W  W  K  L  W  L  L  R  E  G  W  L  *  V  *  C  W  F  I  S  D  V  W  I  Q  *  *   : G  K  P  Q  F  N  Y  S  S  I  G  S  S  R  T  *  I  R  S  Y  T  *  P  N  N  C  T  F  P  P  A  K  *  P  F  C  S  Y  T  P  R  V  *  *  L  H  *  R  A  C  E  *  I  S  T  *  K  G  R  D  Y  Q  I  L  Q  *  M  L  E   : D  L  *  F  S  E  F  I  G  T  E  V  F  G  G  T  H  L  P  F  W  P  V  L  *  E  A  P  *  M  L  D  S  C :   L  L  F  A  P  E  C  W  *  H  R  S  E  V  Y  K  R  S  W  V  A  V  F  Y  R  C  R   : V  L  Y  R  E  Y  S  *  C  I  T  N  T  N  D  Q  C  K  H   : G  S  M  *  Q  T  F  W  R  N  Q  L  P  R  W  W  S  W  R  D  R  Q  I  L  S  K  R  L  G  *  S  R  K  S  D  T  L  *  G  K  C  Y  K  Y  H  F  G  Q  W  Q  S   : C  G  S  E  A  F  *  R  E  E  V  L  C  *  N  H  S  I  E  C  Y  Q  M  G  Y  F  W :   K  A  F  K  S  *  E  S  A  K  R  R  R  K  F  P  E  S  L  C  K  S  T  F  F  S  F  Y  S  Y  G  S  *  S  R  C  T  P  T  R  H  R  L  S  P  F  C  P  R   : G  *  L  D  K  F  G  E  T  I  W  K  Y  I  L  E  Y  S  N  S  S  *  F  L  I  G  P  R  R  T  P  Y  S  S  H  F  Y  N  I  E  H  *  R  L  G   : G  T  L  S  E  R  L  *  S  E  E  R  G  C  C  *  K  D  Y  K  Q  T  *  K  N  T  L  P  R  A  *  V  I  Y  S  L  *  G   : G  G  N  S  K  D  P  Q  T  I  P  C  S  *  *  W  Y  L  W  T  N  A  T  R  N  T  *  G  T  P  G  N  A  F  Q  Y  H   : C  Y  R  W  S  I  L  C  W  R  *  L  L  P  R  T  R  C  Y  S  C  S  L  F  R  S  N  V  R  S  S  C  C  S  *  L  R :   V  *  K  K  I  R  C  A  G  Q  C  S  S  *  T  T  W  L  V  K  D  T  S  M  I  S  T  C  *  A  K  K  K  H  L  T  Q  K  K  K  V  H  Y  V  F  T  F  S  L  Y  Q  *  T  G  K  *  G  S  N  *  G  S  S  S  I  E  I  T  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70263"/>
                    <exon start="69834" stop="69628"/>
                    <exon start="69537" stop="69438"/>
                    <exon start="69046" stop="68964"/>
                    <exon start="68876" stop="68820"/>
                    <exon start="68739" stop="68587"/>
                    <exon start="67954" stop="67876"/>
                    <exon start="67736" stop="67588"/>
                    <exon start="67509" stop="67375"/>
                    <exon start="67268" stop="67155"/>
                    <exon start="67006" stop="66896"/>
                    <exon start="66803" stop="66695"/>
                    <exon start="66264" stop="66191"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWGVDKAKGRRGGTVSNLKAVVDVDKRVESYGSSDVEGNESGSYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGYKFDVGSSVMFGFSDKGNLNLITQALAAVGRKLEVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSKFPHEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNAGSIARKYIRDPGLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71031" e_stop="70956"/>
            <exon e_start="70836" e_stop="70263"/>
            <exon e_start="69834" e_stop="69628"/>
            <exon e_start="69537" e_stop="69438"/>
            <exon e_start="69046" e_stop="68964"/>
            <exon e_start="68876" e_stop="68820"/>
            <exon e_start="68739" e_stop="68587"/>
            <exon e_start="67954" e_stop="67876"/>
            <exon e_start="67736" e_stop="67588"/>
            <exon e_start="67509" e_stop="67375"/>
            <exon e_start="67268" e_stop="67155"/>
            <exon e_start="67006" e_stop="66896"/>
            <exon e_start="66803" e_stop="66695"/>
            <exon e_start="66264" e_stop="66055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.921"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="0.993"/>
          <exon-intron don_prob="0.357" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.843" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="71031" e_stop="70956" e_length="76"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70955" i_stop="70837" i_length="119"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="70836" e_stop="70263" e_length="574"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69834" e_stop="69628" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.357" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69537" e_stop="69438" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.883">
            <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="68964" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68876" e_stop="68820" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="68739" e_stop="68587" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67954" e_stop="67876" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.843" acc_prob="0.918">
            <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="67588" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67509" e_stop="67375" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67268" e_stop="67155" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67006" e_stop="66896" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92"/>
          </intron>
          <exon e_serial="13" e_score="0.982">
            <gDNA_exon_boundary e_start="66803" e_stop="66695" e_length="109"/>
          </exon>
          <intron i_serial="13" don_prob="0.074" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430"/>
          </intron>
          <exon e_serial="14" e_score="0.952">
            <gDNA_exon_boundary e_start="66264" e_stop="66055" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71031" stop="70956"/>
              <exon start="70836" stop="70395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70551" stop="70263"/>
              <exon start="69834" stop="69628"/>
              <exon start="69537" stop="69500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69681" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68700" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66985" stop="66896"/>
              <exon start="66803" stop="66695"/>
              <exon start="66264" stop="66055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205443" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG : AAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG : GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG : ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG : CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG : TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG : GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT : GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG : GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG : GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG : GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG : GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT : GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG : GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTT</gDNA_template>
            <first_frame> *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R   : E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G  G  W  T  R  L  R  E  E  E  G  V  L  F  P  I  *  K  Q  L  *  M  *  T  K  E  W  R  A  M  A  V  V  M  *  K  E  M  R  V  A  A  M  M  P  L  L  *  V  Q  E  *  V  D  W  W  Q  R  R  S  W  R  L  R  E  L  R  F  *  F  W  R  S  M  L  F  L  V  E  A  L  A  F  T  R  G  M  V  I  S  L  M  L  V  H  Q  *  C  L  D  S  V  I  R :   E  T  S  I  *  L  L  K  H  W  Q  Q  *  D  V  N  *  K  L  Y  L  T  Q  Q  L  Y  I  S  T  C  Q  M  T  F  L  F  V  Y  T  E  S  M  M  T  S  L  K  S  L  *  V  N  F  H  M  K  R  K  G  L  S  N  F  T  V  N  A  G  R :   S  L  I  L  *  I  H  W  N  *  S  L  W  R  N  P  S  T  F  L  A  S  S  L  R  S  P  L  N  A  *  L  L  :  P  T  I  C  P  R  M  L  V  A  S  L  G  S  I  *  E  I  L  G  C  C  L  L  *  M  Q  S :   A  L  S  *  V  Q  L  M  H  Y  K  H  Q  *  S  M  Q  A  W :   F  Y  V  T  D  I  L  A  E  S  T  T  P  L  V  E  L  A  R  S  P  N  P  *  Q  K  A  W  M  I  T  E  V  R  Y  F  I  G  Q  M  L  Q  V  S  F  W  T  M  A  K  L :   W  E  *  S  F  L  T  G  G  S  F  M  L  K  P  *  Y  R  M  L  P  D  G  I  L  L  :  E  S  F  *  K  L  R  I  C  Q  K  K  K  K  I  S  R  K  L  M  *  K  H  L  L  F  F  L  F  I  W  E  L  K  Q  M  Y  S  H  Q  T  Q  I  V  T  I  L  S  S  R :   M  I  G  Q  I  W  R  N  H  M  E  V  Y  S  *  V  F  Q  Q  F  L  I  P  H  W  P  Q  K  D  T  I  F  F  T  F  L  Q  H  R  A  L  K  I  G  R :   D  S  L  R  K  T  M  K  R  R  K  R  L  L  L  K  G  L  *  A  D  L  K  K  H  S  S  Q  G  L  S  H  L  F  S  L  R  R :   W  E  L  Q  R  P  T  D  D  T  L  L  V  I  V  V  P  M  D  Q  C  H  A  E  H  L  R  D  S  W  E  C  L  S  I  P  L :   L  *  M  V  Y  I  V  L  A  I  V  A  S  Q  D  K  V  L  *  L  *  P  F  Q  E  *  C  A  L  I  V  L  Q  L  T  *  :  G  L  K  K  N  Q  M  C  W  T  V  L  F  L  D  Y  L  V  G  *  G  H  *  H  D  I  Y  L  L  S  *  K  E  T  F  D  T  K  K  E  S  S  L  C  I  Y  F  F  F  I  S  I  N  W  K  M  R  F  Q  L  R  F  L  Q  Y  R  N  H  R  F </first_frame>
            <second_frame>  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  :  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  G  G  Q  G  *  G  K  K  R  G  Y  C  F  Q  F  E  S  S  C  R  C  R  Q  K  S  G  E  L  W  Q  *  *  C  R  R  K  *  E  W  Q  L  *  C  H  C  Y  R  F  R  N  R  W  I  G  G  S  D  A  A  G  G  *  G  S  *  G  F  S  S  G  E  V  C  Y  S  W  W  K  L  W  L  L  R  E  G  W  L  *  V  *  C  W  F  I  S  D  V  W  I  Q  *  *   : G  K  P  Q  F  N  Y  S  S  I  G  S  S  R  T  *  I  R  S  Y  T  *  P  N  N  C  T  F  P  P  A  K  *  P  F  C  S  Y  T  P  R  V  *  *  L  H  *  R  A  C  E  *  I  S  T  *  K  G  R  D  Y  Q  I  L  Q  *  M  L  E   : D  L  *  F  S  E  F  I  G  T  E  V  F  G  G  T  H  L  P  F  W  P  V  L  *  E  A  P  *  M  L  D  S  C :   L  L  F  A  P  E  C  W  *  H  R  S  E  V  Y  K  R  S  W  V  A  V  F  Y  R  C  R   : V  L  Y  R  E  Y  S  *  C  I  T  N  T  N  D  Q  C  K  H   : G  S  M  *  Q  T  F  W  R  N  Q  L  P  R  W  W  S  W  R  D  R  Q  I  L  S  K  R  L  G  *  S  R  K  S  D  T  L  *  G  K  C  Y  K  Y  H  F  G  Q  W  Q  S   : C  G  S  E  A  F  *  R  E  E  V  L  C  *  N  H  S  I  E  C  Y  Q  M  G  Y  F  W :   K  A  F  K  S  *  E  S  A  K  R  R  R  K  F  P  E  S  L  C  K  S  T  F  F  S  F  Y  S  Y  G  S  *  S  R  C  T  P  T  R  H  R  L  S  P  F  C  P  R   : G  *  L  D  K  F  G  E  T  I  W  K  Y  I  L  E  Y  S  N  S  S  *  F  L  I  G  P  R  R  T  P  Y  S  S  H  F  Y  N  I  E  H  *  R  L  G   : G  T  L  S  E  R  L  *  S  E  E  R  G  C  C  *  K  D  Y  K  Q  T  *  K  N  T  L  P  R  A  *  V  I  Y  S  L  *  G   : G  G  N  S  K  D  P  Q  T  I  P  C  S  *  *  W  Y  L  W  T  N  A  T  R  N  T  *  G  T  P  G  N  A  F  Q  Y  H   : C  Y  R  W  S  I  L  C  W  R  *  L  L  P  R  T  R  C  Y  S  C  S  L  F  R  S  N  V  R  S  S  C  C  S  *  L  R :   V  *  K  K  I  R  C  A  G  Q  C  S  S  *  T  T  W  L  V  K  D  T  S  M  I  S  T  C  *  A  K  K  K  H  L  T  Q  K  K  K  V  H  Y  V  F  T  F  S  L  Y  Q  *  T  G  K  *  G  S  N  *  G  S  S  S  I  E  I  T  D   </second_frame>
            <third_frame>   I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  R :   S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G  V  D  K  A  K  G  R  R  G  G  T  V  S  N  L  K  A  V  V  D  V  D  K  R  V  E  S  Y  G  S  S  D  V  E  G  N  E  S  G  S  Y  D  A  I  V  I  G  S  G  I  G  G  L  V  A  A  T  Q  L  A  V  K  G  A  K  V  L  V  L  E  K  Y  V  I  P  G  G  S  S  G  F  Y  E  R  D  G  Y  K  F  D  V  G  S  S  V  M  F  G  F  S  D  K  :  G  N  L  N  L  I  T  Q  A  L  A  A  V  G  R  K  L  E  V  I  P  D  P  T  T  V  H  F  H  L  P  N  D  L  S  V  R  I  H  R  E  Y  D  D  F  I  E  E  L  V  S  K  F  P  H  E  K  E  G  I  I  K  F  Y  S  E  C  W  K  :  I  F  N  S  L  N  S  L  E  L  K  S  L  E  E  P  I  Y  L  F  G  Q  F  F  K  K  P  L  E  C  L  T  L   : A  Y  Y  L  P  Q  N  A  G  S  I  A  R  K  Y  I  R  D  P  G  L  L  S  F  I  D  A  E  :  C  F  I  V  S  T  V  N  A  L  Q  T  P  M  I  N  A  S  M  :  V  L  C  D  R  H  F  G  G  I  N  Y  P  V  G  G  V  G  E  I  A  K  S  L  A  K  G  L  D  D  H  G  S  Q  I  L  Y  R  A  N  V  T  S  I  I  L  D  N  G  K  A  :  V  G  V  K  L  S  D  G  R  K  F  Y  A  K  T  I  V  S  N  A  T  R  W  D  T  F   : G  K  L  L  K  A  E  N  L  P  K  E  E  E  N  F  Q  K  A  Y  V  K  A  P  S  F  L  S  I  H  M  G  V  K  A  D  V  L  P  P  D  T  D  C  H  H  F  V  L  E  :  D  D  W  T  N  L  E  K  P  Y  G  S  I  F  L  S  I  P  T  V  L  D  S  S  L  A  P  E  G  H  H  I  L  H  I  F  T  T  S  S  I  E  D  W  E  :  G  L  S  P  K  D  Y  E  A  K  K  E  V  V  A  E  R  I  I  S  R  L  E  K  T  L  F  P  G  L  K  S  S  I  L  F  K  E  :  V  G  T  P  K  T  H  R  R  Y  L  A  R  D  S  G  T  Y  G  P  M  P  R  G  T  P  K  G  L  L  G  M  P  F  N  T  T  :  A  I  D  G  L  Y  C  V  G  D  S  C  F  P  G  Q  G  V  I  A  V  A  F  S  G  V  M  C  A  H  R  V  A  A  D  L   : G  F  E  K  K  S  D  V  L  D  S  A  L  L  R  L  L  G  W  L  R  T  L  A  *  Y  L  L  V  K  L  K  R  N  I  *  H  K  K  R  K  F  I  M  Y  L  L  F  L  Y  I  N  K  L  E  N  E  V  P  I  E  V  P  P  V  *  K  S  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70263"/>
                    <exon start="69834" stop="69628"/>
                    <exon start="69537" stop="69438"/>
                    <exon start="69046" stop="68964"/>
                    <exon start="68876" stop="68820"/>
                    <exon start="68739" stop="68587"/>
                    <exon start="67954" stop="67876"/>
                    <exon start="67736" stop="67588"/>
                    <exon start="67509" stop="67375"/>
                    <exon start="67268" stop="67155"/>
                    <exon start="67006" stop="66896"/>
                    <exon start="66803" stop="66695"/>
                    <exon start="66264" stop="66191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWGVDKAKGRRGGTVSNLKAVVDVDKRVESYGSSDVEGNESGSYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGYKFDVGSSVMFGFSDKGNLNLITQALAAVGRKLEVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSKFPHEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNAGSIARKYIRDPGLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71203" e_stop="70956"/>
            <exon e_start="70853" e_stop="70263"/>
            <exon e_start="69834" e_stop="69628"/>
            <exon e_start="69537" e_stop="69438"/>
            <exon e_start="69046" e_stop="68964"/>
            <exon e_start="68876" e_stop="68820"/>
            <exon e_start="68739" e_stop="68587"/>
            <exon e_start="67954" e_stop="67876"/>
            <exon e_start="67736" e_stop="67588"/>
            <exon e_start="67509" e_stop="67375"/>
            <exon e_start="67268" e_stop="67155"/>
            <exon e_start="67006" e_stop="66896"/>
            <exon e_start="66803" e_stop="66695"/>
            <exon e_start="66264" e_stop="66055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.357" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="0.987"/>
          <exon-intron don_prob="0.843" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71203" e_stop="70956" e_length="248"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.967">
            <gDNA_intron_boundary i_start="70955" i_stop="70854" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70853" e_stop="70263" e_length="591"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69834" e_stop="69628" e_length="207"/>
          </exon>
          <intron i_serial="3" don_prob="0.357" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69537" e_stop="69438" e_length="100"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.883">
            <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="68964" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68876" e_stop="68820" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="68739" e_stop="68587" e_length="153"/>
          </exon>
          <intron i_serial="7" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67954" e_stop="67876" e_length="79"/>
          </exon>
          <intron i_serial="8" don_prob="0.843" acc_prob="0.918">
            <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="67588" e_length="149"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67509" e_stop="67375" e_length="135"/>
          </exon>
          <intron i_serial="10" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67268" e_stop="67155" e_length="114"/>
          </exon>
          <intron i_serial="11" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="67006" e_stop="66896" e_length="111"/>
          </exon>
          <intron i_serial="12" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92"/>
          </intron>
          <exon e_serial="13" e_score="0.982">
            <gDNA_exon_boundary e_start="66803" e_stop="66695" e_length="109"/>
          </exon>
          <intron i_serial="13" don_prob="0.074" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430"/>
          </intron>
          <exon e_serial="14" e_score="0.952">
            <gDNA_exon_boundary e_start="66264" e_stop="66055" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71203" stop="70956"/>
              <exon start="70853" stop="70432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70551" stop="70263"/>
              <exon start="69834" stop="69628"/>
              <exon start="69537" stop="69500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299622" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69750" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69681" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68700" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66985" stop="66896"/>
              <exon start="66803" stop="66695"/>
              <exon start="66264" stop="66055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205443" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG : TATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG : GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG : ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG : CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG : TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG : GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT : GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG : GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG : GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG : GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG : GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT : GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG : GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTT</gDNA_template>
            <first_frame> S  C  Q  S  T  S  L  S  I  S  S  T  T  N  K  G  R  T  L  H  F  A  H  T  H  L  I  K  I  H  L  N  T  S  L  T  L  L  N  H  L  Y  S  L  R  I  V  K  I  P  F  L  *  L  L  V  S  V  I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  S :   I  L  A  A  A  E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G  G  W  T  R  L  R  E  E  E  G  V  L  F  P  I  *  K  Q  L  *  M  *  T  K  E  W  R  A  M  A  V  V  M  *  K  E  M  R  V  A  A  M  M  P  L  L  *  V  Q  E  *  V  D  W  W  Q  R  R  S  W  R  L  R  E  L  R  F  *  F  W  R  S  M  L  F  L  V  E  A  L  A  F  T  R  G  M  V  I  S  L  M  L  V  H  Q  *  C  L  D  S  V  I  R :   E  T  S  I  *  L  L  K  H  W  Q  Q  *  D  V  N  *  K  L  Y  L  T  Q  Q  L  Y  I  S  T  C  Q  M  T  F  L  F  V  Y  T  E  S  M  M  T  S  L  K  S  L  *  V  N  F  H  M  K  R  K  G  L  S  N  F  T  V  N  A  G  R :   S  L  I  L  *  I  H  W  N  *  S  L  W  R  N  P  S  T  F  L  A  S  S  L  R  S  P  L  N  A  *  L  L  :  P  T  I  C  P  R  M  L  V  A  S  L  G  S  I  *  E  I  L  G  C  C  L  L  *  M  Q  S :   A  L  S  *  V  Q  L  M  H  Y  K  H  Q  *  S  M  Q  A  W :   F  Y  V  T  D  I  L  A  E  S  T  T  P  L  V  E  L  A  R  S  P  N  P  *  Q  K  A  W  M  I  T  E  V  R  Y  F  I  G  Q  M  L  Q  V  S  F  W  T  M  A  K  L :   W  E  *  S  F  L  T  G  G  S  F  M  L  K  P  *  Y  R  M  L  P  D  G  I  L  L  :  E  S  F  *  K  L  R  I  C  Q  K  K  K  K  I  S  R  K  L  M  *  K  H  L  L  F  F  L  F  I  W  E  L  K  Q  M  Y  S  H  Q  T  Q  I  V  T  I  L  S  S  R :   M  I  G  Q  I  W  R  N  H  M  E  V  Y  S  *  V  F  Q  Q  F  L  I  P  H  W  P  Q  K  D  T  I  F  F  T  F  L  Q  H  R  A  L  K  I  G  R :   D  S  L  R  K  T  M  K  R  R  K  R  L  L  L  K  G  L  *  A  D  L  K  K  H  S  S  Q  G  L  S  H  L  F  S  L  R  R :   W  E  L  Q  R  P  T  D  D  T  L  L  V  I  V  V  P  M  D  Q  C  H  A  E  H  L  R  D  S  W  E  C  L  S  I  P  L :   L  *  M  V  Y  I  V  L  A  I  V  A  S  Q  D  K  V  L  *  L  *  P  F  Q  E  *  C  A  L  I  V  L  Q  L  T  *  :  G  L  K  K  N  Q  M  C  W  T  V  L  F  L  D  Y  L  V  G  *  G  H  *  H  D  I  Y  L  L  S  *  K  E  T  F  D  T  K  K  E  S  S  L  C  I  Y  F  F  F  I  S  I  N  W  K  M  R  F  Q  L  R  F  L  Q  Y  R  N  H  R  F </first_frame>
            <second_frame>  H  A  N  P  L  L  F  P  F  Q  A  L  Q  T  R  E  E  P  F  T  L  L  I  P  T  S  S  K  S  T  *  I  L  L  S  L  C  S  I  I  Y  I  A  *  E  L  S  R  F  H  F  Y  S  C  W  C  L  *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R   : V  F  W  Q  L  Q  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  G  G  Q  G  *  G  K  K  R  G  Y  C  F  Q  F  E  S  S  C  R  C  R  Q  K  S  G  E  L  W  Q  *  *  C  R  R  K  *  E  W  Q  L  *  C  H  C  Y  R  F  R  N  R  W  I  G  G  S  D  A  A  G  G  *  G  S  *  G  F  S  S  G  E  V  C  Y  S  W  W  K  L  W  L  L  R  E  G  W  L  *  V  *  C  W  F  I  S  D  V  W  I  Q  *  *   : G  K  P  Q  F  N  Y  S  S  I  G  S  S  R  T  *  I  R  S  Y  T  *  P  N  N  C  T  F  P  P  A  K  *  P  F  C  S  Y  T  P  R  V  *  *  L  H  *  R  A  C  E  *  I  S  T  *  K  G  R  D  Y  Q  I  L  Q  *  M  L  E   : D  L  *  F  S  E  F  I  G  T  E  V  F  G  G  T  H  L  P  F  W  P  V  L  *  E  A  P  *  M  L  D  S  C :   L  L  F  A  P  E  C  W  *  H  R  S  E  V  Y  K  R  S  W  V  A  V  F  Y  R  C  R   : V  L  Y  R  E  Y  S  *  C  I  T  N  T  N  D  Q  C  K  H   : G  S  M  *  Q  T  F  W  R  N  Q  L  P  R  W  W  S  W  R  D  R  Q  I  L  S  K  R  L  G  *  S  R  K  S  D  T  L  *  G  K  C  Y  K  Y  H  F  G  Q  W  Q  S   : C  G  S  E  A  F  *  R  E  E  V  L  C  *  N  H  S  I  E  C  Y  Q  M  G  Y  F  W :   K  A  F  K  S  *  E  S  A  K  R  R  R  K  F  P  E  S  L  C  K  S  T  F  F  S  F  Y  S  Y  G  S  *  S  R  C  T  P  T  R  H  R  L  S  P  F  C  P  R   : G  *  L  D  K  F  G  E  T  I  W  K  Y  I  L  E  Y  S  N  S  S  *  F  L  I  G  P  R  R  T  P  Y  S  S  H  F  Y  N  I  E  H  *  R  L  G   : G  T  L  S  E  R  L  *  S  E  E  R  G  C  C  *  K  D  Y  K  Q  T  *  K  N  T  L  P  R  A  *  V  I  Y  S  L  *  G   : G  G  N  S  K  D  P  Q  T  I  P  C  S  *  *  W  Y  L  W  T  N  A  T  R  N  T  *  G  T  P  G  N  A  F  Q  Y  H   : C  Y  R  W  S  I  L  C  W  R  *  L  L  P  R  T  R  C  Y  S  C  S  L  F  R  S  N  V  R  S  S  C  C  S  *  L  R :   V  *  K  K  I  R  C  A  G  Q  C  S  S  *  T  T  W  L  V  K  D  T  S  M  I  S  T  C  *  A  K  K  K  H  L  T  Q  K  K  K  V  H  Y  V  F  T  F  S  L  Y  Q  *  T  G  K  *  G  S  N  *  G  S  S  S  I  E  I  T  D   </second_frame>
            <third_frame>   M  P  I  H  F  S  F  H  F  K  H  Y  K  Q  G  K  N  P  S  L  C  S  Y  P  P  H  Q  N  P  P  K  Y  F  S  H  F  A  Q  S  S  I  *  P  K  N  C  Q  D  S  I  F  I  V  V  G  V  C  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  :  Y  F  G  S  C  R  S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G  V  D  K  A  K  G  R  R  G  G  T  V  S  N  L  K  A  V  V  D  V  D  K  R  V  E  S  Y  G  S  S  D  V  E  G  N  E  S  G  S  Y  D  A  I  V  I  G  S  G  I  G  G  L  V  A  A  T  Q  L  A  V  K  G  A  K  V  L  V  L  E  K  Y  V  I  P  G  G  S  S  G  F  Y  E  R  D  G  Y  K  F  D  V  G  S  S  V  M  F  G  F  S  D  K  :  G  N  L  N  L  I  T  Q  A  L  A  A  V  G  R  K  L  E  V  I  P  D  P  T  T  V  H  F  H  L  P  N  D  L  S  V  R  I  H  R  E  Y  D  D  F  I  E  E  L  V  S  K  F  P  H  E  K  E  G  I  I  K  F  Y  S  E  C  W  K  :  I  F  N  S  L  N  S  L  E  L  K  S  L  E  E  P  I  Y  L  F  G  Q  F  F  K  K  P  L  E  C  L  T  L   : A  Y  Y  L  P  Q  N  A  G  S  I  A  R  K  Y  I  R  D  P  G  L  L  S  F  I  D  A  E  :  C  F  I  V  S  T  V  N  A  L  Q  T  P  M  I  N  A  S  M  :  V  L  C  D  R  H  F  G  G  I  N  Y  P  V  G  G  V  G  E  I  A  K  S  L  A  K  G  L  D  D  H  G  S  Q  I  L  Y  R  A  N  V  T  S  I  I  L  D  N  G  K  A  :  V  G  V  K  L  S  D  G  R  K  F  Y  A  K  T  I  V  S  N  A  T  R  W  D  T  F   : G  K  L  L  K  A  E  N  L  P  K  E  E  E  N  F  Q  K  A  Y  V  K  A  P  S  F  L  S  I  H  M  G  V  K  A  D  V  L  P  P  D  T  D  C  H  H  F  V  L  E  :  D  D  W  T  N  L  E  K  P  Y  G  S  I  F  L  S  I  P  T  V  L  D  S  S  L  A  P  E  G  H  H  I  L  H  I  F  T  T  S  S  I  E  D  W  E  :  G  L  S  P  K  D  Y  E  A  K  K  E  V  V  A  E  R  I  I  S  R  L  E  K  T  L  F  P  G  L  K  S  S  I  L  F  K  E  :  V  G  T  P  K  T  H  R  R  Y  L  A  R  D  S  G  T  Y  G  P  M  P  R  G  T  P  K  G  L  L  G  M  P  F  N  T  T  :  A  I  D  G  L  Y  C  V  G  D  S  C  F  P  G  Q  G  V  I  A  V  A  F  S  G  V  M  C  A  H  R  V  A  A  D  L   : G  F  E  K  K  S  D  V  L  D  S  A  L  L  R  L  L  G  W  L  R  T  L  A  *  Y  L  L  V  K  L  K  R  N  I  *  H  K  K  R  K  F  I  M  Y  L  L  F  L  Y  I  N  K  L  E  N  E  V  P  I  E  V  P  P  V  *  K  S  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70263"/>
                    <exon start="69834" stop="69628"/>
                    <exon start="69537" stop="69438"/>
                    <exon start="69046" stop="68964"/>
                    <exon start="68876" stop="68820"/>
                    <exon start="68739" stop="68587"/>
                    <exon start="67954" stop="67876"/>
                    <exon start="67736" stop="67588"/>
                    <exon start="67509" stop="67375"/>
                    <exon start="67268" stop="67155"/>
                    <exon start="67006" stop="66896"/>
                    <exon start="66803" stop="66695"/>
                    <exon start="66264" stop="66191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWGVDKAKGRRGGTVSNLKAVVDVDKRVESYGSSDVEGNESGSYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGYKFDVGSSVMFGFSDKGNLNLITQALAAVGRKLEVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSKFPHEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNAGSIARKYIRDPGLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68753" e_stop="68587"/>
            <exon e_start="67954" e_stop="67876"/>
            <exon e_start="67736" e_stop="67588"/>
            <exon e_start="67509" e_stop="67375"/>
            <exon e_start="67268" e_stop="67155"/>
            <exon e_start="67006" e_stop="66896"/>
            <exon e_start="66803" e_stop="66695"/>
            <exon e_start="66264" e_stop="66055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="0.982"/>
          <exon-intron don_prob="0.843" acc_prob="0.918" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.998" e_score="0.982"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="68753" e_stop="68587" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="67954" e_stop="67876" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.918">
            <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="67588" e_length="149"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="67509" e_stop="67375" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67268" e_stop="67155" e_length="114"/>
          </exon>
          <intron i_serial="5" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="67006" e_stop="66896" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="0.982">
            <gDNA_exon_boundary e_start="66803" e_stop="66695" e_length="109"/>
          </exon>
          <intron i_serial="7" don_prob="0.074" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430"/>
          </intron>
          <exon e_serial="8" e_score="0.952">
            <gDNA_exon_boundary e_start="66264" e_stop="66055" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68753" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68700" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67916" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67887" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66985" stop="66896"/>
              <exon start="66803" stop="66695"/>
              <exon start="66264" stop="66055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205443" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTCTTTCTGCAGGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT : GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG : GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG : GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG : GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG : GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT : GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG : GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTT</gDNA_template>
            <first_frame> F  S  F  C  R  F  Y  V  T  D  I  L  A  E  S  T  T  P  L  V  E  L  A  R  S  P  N  P  *  Q  K  A  W  M  I  T  E  V  R  Y  F  I  G  Q  M  L  Q  V  S  F  W  T  M  A  K  L :   W  E  *  S  F  L  T  G  G  S  F  M  L  K  P  *  Y  R  M  L  P  D  G  I  L  L  :  E  S  F  *  K  L  R  I  C  Q  K  K  K  K  I  S  R  K  L  M  *  K  H  L  L  F  F  L  F  I  W  E  L  K  Q  M  Y  S  H  Q  T  Q  I  V  T  I  L  S  S  R :   M  I  G  Q  I  W  R  N  H  M  E  V  Y  S  *  V  F  Q  Q  F  L  I  P  H  W  P  Q  K  D  T  I  F  F  T  F  L  Q  H  R  A  L  K  I  G  R :   D  S  L  R  K  T  M  K  R  R  K  R  L  L  L  K  G  L  *  A  D  L  K  K  H  S  S  Q  G  L  S  H  L  F  S  L  R  R :   W  E  L  Q  R  P  T  D  D  T  L  L  V  I  V  V  P  M  D  Q  C  H  A  E  H  L  R  D  S  W  E  C  L  S  I  P  L :   L  *  M  V  Y  I  V  L  A  I  V  A  S  Q  D  K  V  L  *  L  *  P  F  Q  E  *  C  A  L  I  V  L  Q  L  T  *  :  G  L  K  K  N  Q  M  C  W  T  V  L  F  L  D  Y  L  V  G  *  G  H  *  H  D  I  Y  L  L  S  *  K  E  T  F  D  T  K  K  E  S  S  L  C  I  Y  F  F  F  I  S  I  N  W  K  M  R  F  Q  L  R  F  L  Q  Y  R  N  H  R  F </first_frame>
            <second_frame>  F  L  S  A  G  S  M  *  Q  T  F  W  R  N  Q  L  P  R  W  W  S  W  R  D  R  Q  I  L  S  K  R  L  G  *  S  R  K  S  D  T  L  *  G  K  C  Y  K  Y  H  F  G  Q  W  Q  S   : C  G  S  E  A  F  *  R  E  E  V  L  C  *  N  H  S  I  E  C  Y  Q  M  G  Y  F  W :   K  A  F  K  S  *  E  S  A  K  R  R  R  K  F  P  E  S  L  C  K  S  T  F  F  S  F  Y  S  Y  G  S  *  S  R  C  T  P  T  R  H  R  L  S  P  F  C  P  R   : G  *  L  D  K  F  G  E  T  I  W  K  Y  I  L  E  Y  S  N  S  S  *  F  L  I  G  P  R  R  T  P  Y  S  S  H  F  Y  N  I  E  H  *  R  L  G   : G  T  L  S  E  R  L  *  S  E  E  R  G  C  C  *  K  D  Y  K  Q  T  *  K  N  T  L  P  R  A  *  V  I  Y  S  L  *  G   : G  G  N  S  K  D  P  Q  T  I  P  C  S  *  *  W  Y  L  W  T  N  A  T  R  N  T  *  G  T  P  G  N  A  F  Q  Y  H   : C  Y  R  W  S  I  L  C  W  R  *  L  L  P  R  T  R  C  Y  S  C  S  L  F  R  S  N  V  R  S  S  C  C  S  *  L  R :   V  *  K  K  I  R  C  A  G  Q  C  S  S  *  T  T  W  L  V  K  D  T  S  M  I  S  T  C  *  A  K  K  K  H  L  T  Q  K  K  K  V  H  Y  V  F  T  F  S  L  Y  Q  *  T  G  K  *  G  S  N  *  G  S  S  S  I  E  I  T  D   </second_frame>
            <third_frame>   F  F  L  Q  V  L  C  D  R  H  F  G  G  I  N  Y  P  V  G  G  V  G  E  I  A  K  S  L  A  K  G  L  D  D  H  G  S  Q  I  L  Y  R  A  N  V  T  S  I  I  L  D  N  G  K  A  :  V  G  V  K  L  S  D  G  R  K  F  Y  A  K  T  I  V  S  N  A  T  R  W  D  T  F   : G  K  L  L  K  A  E  N  L  P  K  E  E  E  N  F  Q  K  A  Y  V  K  A  P  S  F  L  S  I  H  M  G  V  K  A  D  V  L  P  P  D  T  D  C  H  H  F  V  L  E  :  D  D  W  T  N  L  E  K  P  Y  G  S  I  F  L  S  I  P  T  V  L  D  S  S  L  A  P  E  G  H  H  I  L  H  I  F  T  T  S  S  I  E  D  W  E  :  G  L  S  P  K  D  Y  E  A  K  K  E  V  V  A  E  R  I  I  S  R  L  E  K  T  L  F  P  G  L  K  S  S  I  L  F  K  E  :  V  G  T  P  K  T  H  R  R  Y  L  A  R  D  S  G  T  Y  G  P  M  P  R  G  T  P  K  G  L  L  G  M  P  F  N  T  T  :  A  I  D  G  L  Y  C  V  G  D  S  C  F  P  G  Q  G  V  I  A  V  A  F  S  G  V  M  C  A  H  R  V  A  A  D  L   : G  F  E  K  K  S  D  V  L  D  S  A  L  L  R  L  L  G  W  L  R  T  L  A  *  Y  L  L  V  K  L  K  R  N  I  *  H  K  K  R  K  F  I  M  Y  L  L  F  L  Y  I  N  K  L  E  N  E  V  P  I  E  V  P  P  V  *  K  S  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68751" stop="68587"/>
                    <exon start="67954" stop="67876"/>
                    <exon start="67736" stop="67588"/>
                    <exon start="67509" stop="67375"/>
                    <exon start="67268" stop="67155"/>
                    <exon start="67006" stop="66896"/>
                    <exon start="66803" stop="66695"/>
                    <exon start="66264" stop="66191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLQVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71202" e_stop="70956"/>
            <exon e_start="70842" e_stop="70569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.890" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71202" e_stop="70956" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.890">
            <gDNA_intron_boundary i_start="70955" i_stop="70843" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70842" e_stop="70569" e_length="274"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71202" stop="70956"/>
              <exon start="70842" stop="70569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330632" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG : CTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGG</gDNA_template>
            <first_frame> H  A  N  P  L  L  F  P  F  Q  A  L  Q  T  R  E  E  P  F  T  L  L  I  P  T  S  S  K  S  T  *  I  L  L  S  L  C  S  I  I  Y  I  A  *  E  L  S  R  F  H  F  Y  S  C  W  C  L  *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R   : A  A  E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G   </first_frame>
            <second_frame>  M  P  I  H  F  S  F  H  F  K  H  Y  K  Q  G  K  N  P  S  L  C  S  Y  P  P  H  Q  N  P  P  K  Y  F  S  H  F  A  Q  S  S  I  *  P  K  N  C  Q  D  S  I  F  I  V  V  G  V  C  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  :  L  Q  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  </second_frame>
            <third_frame>   C  Q  S  T  S  L  S  I  S  S  T  T  N  K  G  R  T  L  H  F  A  H  T  H  L  I  K  I  H  L  N  T  S  L  T  L  L  N  H  L  Y  S  L  R  I  V  K  I  P  F  L  *  L  L  V  S  V  I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  S :   C  R  S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="71903" PGL_stop="77858"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71903" e_stop="72043"/>
            <exon e_start="73912" e_stop="73994"/>
            <exon e_start="74061" e_stop="74360"/>
            <exon e_start="74529" e_stop="74630"/>
            <exon e_start="74797" e_stop="74991"/>
            <exon e_start="75090" e_stop="75380"/>
            <exon e_start="75860" e_stop="76046"/>
            <exon e_start="77395" e_stop="77441"/>
            <exon e_start="77531" e_stop="77858"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71903" e_stop="72043" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73912" e_stop="73994" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.916">
            <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74061" e_stop="74360" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.912">
            <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74529" e_stop="74630" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74797" e_stop="74991" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="0.748" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75090" e_stop="75380" e_length="291"/>
          </exon>
          <intron i_serial="6" don_prob="0.859" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75860" e_stop="76046" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77395" e_stop="77441" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.916" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.997">
            <gDNA_exon_boundary e_start="77531" e_stop="77858" e_length="328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71903" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71932" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71943" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71972" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71973" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71973" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71976" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71976" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74190" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74298" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74831" stop="74991"/>
              <exon start="75090" stop="75380"/>
              <exon start="75860" stop="75908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74903" stop="74991"/>
              <exon start="75090" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74941" stop="74991"/>
              <exon start="75090" stop="75380"/>
              <exon start="75860" stop="75995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75316" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75316" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75316" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75360" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342392" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG : GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG : GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG : TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG : CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG : GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT : AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG : GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG : AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAGAAGTCAAGAT</gDNA_template>
            <first_frame> L  G  *  L  C  A  Y  K  R  S  A  K  Q  F  G  S  T  W  L  Y  A  I  N  C  L  L  P  I  C  D  L  F  T  P  K  R  F  I  F  L  F  P  Q  I  Q  F  Q  :  V  E  A  N  L  H  Q  S  W  I  G  *  P  V  L  H  V  S  *  *  S  R  I  L  T  I  Q  W :   *  I  I  M  I  P  R  T  F  L  C  L  G  S  M  L  Y  G  R  P  I  I  V  I  T  L  C  *  C  S  L  L  G  D  H  L  H  Y  T  R  N  *  G  K  K  S  P  C  *  P  Q  I  L  Q  L  C  L  W  E  L  K  *  H  M  V  T  L  W  C  L  M  M  V  G  K  L  F  *  I  T  S  G  I  E  R  *  *  Q  R  R  Q  A  S  F  L  N  S  V  C  S :   Q  K  Q  S  S  D  H  T  K  S  V  S  M  F  R  K  R  K  L  K  I  *  *  K  L  F  P  S  A  *  K  N  V  G :   W  M  S  K  *  F  T  V  E  G  W  I  *  I  S  Y  H  K  V  L  A  K  D  K  H  L  H  I  C  L  R  N  *  R  A  R  E  N  Y  Q  A  T  P  L  P  A  V  T  P  G  M  T  L  S  Y  S  V  S  Q  M  C  M  V  *  W :   *  L  M  R  R  R  N  Y  C  S  G  M  L  Q  M  Q  K  I  I  P  K  *  F  M  H  Q  R  G  V  L  P  V  S  Y  K  P  L  V  I  S  T  *  V  Q  V  P  P  Q  E  M  L  Q  I  Y  Q  I  A  R  W  T  T  L  F  L  P  M  K  L  S  N  F  T  C  F  L  R  N  G  G  V  E  K  L  S  I  L  S  I  I  C  Q  T  *  K  Q  C  V :   D  H  L  V  L  L  F  T  H  L  V  L  R  N  P  F  R  N  V  *  L  H  S  E  H  V  M  L  T  N  M  G  N  N  I  V  F  G  S  I  K  F  Y  L  H  R  L  V  Q  T  H  G  *  *  V  S  R  S  G  S  S  L  :  V  K  T  G  D  A  A  *  L  Q  S  Y  *  V  Q  R :   I  R  L  L  Q  T  G  S  L  G  L  T  Y  I  R  H  G  C  T  T  M  H  Q  V  T  P  R  P  G  S  F  R  L  P  F  S  V  Y  *  L  *  K  L  S  T  P  F  T  S  F  T  P  R  I  N  T  I  Y  K  L  *  L  I  I  N  V  L  T  F  S  S  F  D  N  Q  L  L  P  S  K  P  V  K  M  A  L  P  F  L  C  S  I  K  N  Y  I  N  I  Y  S  S  S  I  *  F  R  S  Q  D </first_frame>
            <second_frame>  W  V  S  F  V  L  T  K  E  A  P  N  N  L  D  P  H  G  Y  T  Q  L  T  V  F  C  L  F  A  I  S  L  H  P  K  D  S  F  F  C  F  P  K  S  N  F  R :   L  K  P  I  Y  I  N  H  G  *  A  N  Q  C  C  T  S  H  D  S  L  G  S  *  P  Y  N   : G  R  S  S  *  F  R  E  P  F  S  A  *  V  Q  C  F  M  G  G  Q  L  S  *  *  L  F  V  S  V  L  Y  W  E  I  T  Y  T  I  Q  G  I  E  E  R  K  A  H  A  N  P  R  Y  Y  N  Y  V  C  G  N  *  N  N  I  W  *  R  Y  G  A  *  *  W  L  G  N  F  S  E  *  Q  V  G  *  K  D  S  N  R  G  D  K  Q  V  S  *  T  Q  S  A   : V  R  N  R  A  A  T  T  Q  S  Q  F  L  C  S  E  R  E  S  S  R  Y  N  E  N  S  F  Q  A  L  E  R  T  W   : A  G  C  Q  N  N  L  Q  W  R  D  G  S  R  Y  L  T  T  R  C  W  Q  R  T  S  T  C  I  S  A  *  E  T  E  E  R  G  K  I  T  K  Q  H  P  C  L  R  *  L  R  E  *  R  *  V  I  Q  Y  P  R  C  V  W  C  N   : G  S  *  C  A  G  G  I  T  A  V  A  C  C  K  C  K  K  *  S  Q  S  N  S  C  I  R  E  V  C  C  R  Y  H  T  S  H  W  S  F  Q  P  R  S  K  Y  L  P  K  R  C  Y  R  F  I  R  L  Q  D  G  Q  L  C  S  C  L  *  S  C  Q  I  L  P  V  F  *  E  M  E  A  W  R  N  *  A  F  *  A  L  S  V  K  P  E  S  S  V   : *  T  I  W  Y  F  C  S  P  I  W  C  *  E  I  P  S  G  M  C  N  Y  I  R  N  M  S  C  *  Q  T  W  E  T  I  S  C  L  G  R  S  S  F  T  F  T  G  W  F  R  L  M  V  S  E  F  Q  E  V  G  A  L  W :   *  K  Q  A  M  L  H  N  Y  S  P  I  K  F  K   : E  *  D  C  C  R  R  A  H  L  D  S  R  T  S  D  M  A  A  R  R  C  I  K  *  L  R  V  L  V  L  L  D  C  L  S  Q  C  I  N  S  E  N  S  A  P  L  L  P  V  S  H  P  E  *  T  Q  Y  T  N  Y  S  *  *  S  M  Y  *  L  S  P  P  L  I  I  N  Y  Y  H  L  N  Q  *  R  W  L  C  L  F  C  V  V  *  R  I  I  L  I  S  I  V  L  L  F  D  S  E  V  K   </second_frame>
            <third_frame>   G  L  A  L  C  L  Q  K  K  R  Q  T  I  W  I  H  M  A  I  R  N  *  L  S  F  A  Y  L  R  S  L  Y  T  Q  K  I  H  F  F  V  S  P  N  P  I  S   : G  *  S  Q  F  T  S  I  M  D  R  L  T  S  A  A  R  L  M  I  V  S  D  L  D  H  T  M  :  V  D  H  H  D  S  E  N  L  S  L  L  R  F  N  A  L  W  E  A  N  Y  R  D  N  S  L  L  V  F  S  T  G  R  S  P  T  L  Y  K  E  L  R  K  E  K  P  M  L  T  P  D  I  T  I  M  S  V  G  T  E  I  T  Y  G  N  A  M  V  P  D  D  G  W  E  T  F  L  N  N  K  W  D  R  K  I  V  T  E  E  T  S  K  F  P  E  L  S  L  Q  :  S  E  T  E  Q  R  P  H  K  V  S  F  Y  V  Q  K  E  K  A  Q  D  I  M  K  T  L  S  K  R  L  K  E  R  G  :  L  D  V  K  I  I  Y  S  G  G  M  D  L  D  I  L  P  Q  G  A  G  K  G  Q  A  L  A  Y  L  L  K  K  L  K  S  E  G  K  L  P  S  N  T  L  A  C  G  D  S  G  N  D  A  E  L  F  S  I  P  D  V  Y  G  V  M  :  V  A  N  A  Q  E  E  L  L  Q  W  H  A  A  N  A  K  N  N  P  K  V  I  H  A  S  E  R  C  A  A  G  I  I  Q  A  I  G  H  F  N  L  G  P  S  T  S  P  R  D  V  T  D  L  S  D  C  K  M  D  N  F  V  P  A  Y  E  V  V  K  F  Y  L  F  F  E  K  W  R  R  G  E  I  E  H  S  E  H  Y  L  S  N  L  K  A  V  C  :  R  P  S  G  T  F  V  H  P  S  G  V  E  K  S  L  Q  E  C  V  T  T  F  G  T  C  H  A  D  K  H  G  K  Q  Y  R  V  W  V  D  Q  V  L  P  S  Q  V  G  S  D  S  W  L  V  S  F  K  K  W  E  L  S   : G  E  N  R  R  C  C  I  T  T  V  L  L  S  S  K  :  N  K  T  V  A  D  G  L  T  W  T  H  V  H  Q  T  W  L  H  D  D  A  S  S  D  S  A  S  W  F  F  *  I  A  F  L  S  V  L  T  L  K  T  Q  H  P  F  Y  Q  F  H  T  Q  N  K  H  N  I  Q  T  I  V  D  N  Q  C  I  N  F  L  L  L  *  *  S  I  I  T  I  *  T  S  E  D  G  F  A  F  F  V  *  Y  K  E  L  Y  *  Y  L  *  F  F  Y  L  I  Q  K  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73917" stop="73994"/>
                    <exon start="74061" stop="74360"/>
                    <exon start="74529" stop="74630"/>
                    <exon start="74797" stop="74991"/>
                    <exon start="75090" stop="75380"/>
                    <exon start="75860" stop="76046"/>
                    <exon start="77395" stop="77441"/>
                    <exon start="77531" stop="77626"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFTSIMDRLTSAARLMIVSDLDHTMVDHHDSENLSLLRFNALWEANYRDNSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNAMVPDDGWETFLNNKWDRKIVTEETSKFPELSLQSETEQRPHKVSFYVQKEKAQDIMKTLSKRLKERGLDVKIIYSGGMDLDILPQGAGKGQALAYLLKKLKSEGKLPSNTLACGDSGNDAELFSIPDVYGVMVANAQEELLQWHAANAKNNPKVIHASERCAAGIIQAIGHFNLGPSTSPRDVTDLSDCKMDNFVPAYEVVKFYLFFEKWRRGEIEHSEHYLSNLKAVCRPSGTFVHPSGVEKSLQECVTTFGTCHADKHGKQYRVWVDQVLPSQVGSDSWLVSFKKWELSGENRRCCITTVLLSSKNKTVADGLTWTHVHQTWLHDDASSDSASWFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76756" e_stop="77354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="76756" e_stop="77354" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76756" stop="77354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATT</gDNA_template>
            <first_frame> N  H  T  R  N  H  L  F  L  I  L  L  N  F  *  S  I  H  Q  I  H  C  *  A  H  T  K  P  L  Q  A  S  T  V  D  N  D  S  *  S  I  E  S  R  A  *  *  *  V  K  H  L  A  F  S  V  E  L  V  *  G  L  G  A  P  D  H  W  I  T  V  P  T  Q  L  W  S  D  K  K  V  *  P  Q  *  S  Y  H  R  I  R  S  L  F  P  I  *  F  H  R  R  *  S  S  L  G  K  L  S  C  V  F  L  L  L  M  G  C  E  M  S  S  C  N  V  A  S  D  I  S  C  R  Y  S  F  H  K  V  V  N  G  R  S  V  L  D  Q  H  S  S  G  A  A  P  A  C  L  Y  L  Q  Q  M  D  L  T  V  S  L  *  R  K  K  G  A  V  N  K  *  P  S  I  C  C  K  Q  D  N  *  C  L  C  N  T  C  I  F  D  L  I   </first_frame>
            <second_frame>  T  I  H  E  I  I  C  S  L  S  Y  *  T  S  R  A  Y  T  K  S  T  V  K  L  I  Q  N  L  F  K  L  Q  L  W  I  M  I  V  E  A  *  R  V  E  H  S  N  E  S  S  I  *  L  F  Q  L  S  L  C  E  V  *  V  P  L  I  I  G  L  Q  C  L  H  S  F  G  L  I  R  K  S  N  L  N  S  L  T  T  E  Y  A  P  Y  F  L  S  D  F  T  A  G  S  Q  V  *  V  N  Y  H  A  Y  S  C  F  *  W  D  V  R  *  V  H  V  M  *  L  L  I  F  H  A  V  T  P  F  I  R  S  L  M  V  G  L  Y  W  I  S  T  V  A  E  Q  L  L  H  A  F  T  C  N  K  W  T  *  L  L  V  S  E  G  K  R  G  L  S  I  S  N  H  Q  F  V  A  S  R  I  I  N  A  Y  A  T  L  A  F  S  I  S  Y  </second_frame>
            <third_frame>   P  Y  T  K  S  S  V  P  Y  P  T  K  L  L  E  H  T  P  N  P  L  L  S  S  Y  K  T  S  S  S  F  N  C  G  *  *  *  L  K  H  R  E  S  S  I  V  M  S  Q  A  F  S  F  F  S  *  A  C  V  R  F  R  C  P  *  S  L  D  Y  S  A  Y  T  A  L  V  *  *  E  S  L  T  S  I  V  L  P  P  N  T  L  P  I  S  Y  L  I  S  P  Q  V  V  K  F  R  *  T  I  M  R  I  P  A  F  D  G  M  *  D  E  F  M  *  C  S  F  *  Y  F  M  P  L  L  L  S  *  G  R  *  W  S  V  C  T  G  S  A  Q  *  R  S  S  S  C  M  P  L  P  A  T  N  G  L  N  C  *  S  L  K  E  K  G  G  C  Q  *  V  T  I  N  L  L  Q  A  G  *  L  M  L  M  Q  H  L  H  F  R  S  H  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77062" stop="77262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLGKLSCVFLLLMGCEMSSCNVASDISCRYSFHKVVNGRSVLDQHSSGAAPACLYLQQMDLTVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71990" e_stop="72837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="71990" e_stop="72837" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71990" stop="72837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703697" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</gDNA_template>
            <first_frame> D  L  F  T  P  K  R  F  I  F  L  F  P  Q  I  Q  F  Q  V  T  L  L  L  P  L  Y  I  F  V  H  F  W  *  L  I  C  V  Y  L  D  *  F  V  F  E  N  Y  I  V  G  I  E  K  R  L  V  F  L  Y  V  *  S  V  E  S  L  C  Y  S  E  V  A  K  G  C  S  R  L  C  *  I  I  G  *  N  F  R  C  N  G  P  Y  V  L  V  L  D  L  L  L  R  I  N  *  S  V  Q  P  V  L  G  F  E  V  R  M  R  F  *  V  E  S  D  C  L  C  I  N  L  C  I  L  R  K  I  *  G  *  T  *  L  N  F  G  V  G  L  S  *  F  G  F  S  L  V  I  L  G  K  K  C  Y  F  D  *  F  R  T  L  D  L  D  P  F  S  W  G  F  F  Y  S  *  R  L  D  E  *  L  L  N  L  G  V  V  I  Q  E  L  A  L  E  *  K  M  E  V  L  D  I  P  F  Y  S  P  L  F  L  D  P  V  F  G  F  Q  S  L  R  I  *  P  N  L  S  *  I  F  R  I  Y  C  T  V  H  N  R  *  D  D  R  S  P  L  *  R  I  W  Y  F  N  M  L  V  C  E  S  V  K  Y  L  S  N  L  S  L  F  K  *  Y  L  S  L  I   </first_frame>
            <second_frame>  I  S  L  H  P  K  D  S  F  F  C  F  P  K  S  N  F  R  *  P  F  C  S  L  F  T  F  L  Y  I  S  G  D  *  F  A  C  I  S  T  N  L  F  L  K  T  I  L  W  E  *  R  K  D  *  F  F  Y  M  Y  E  V  L  N  P  F  V  I  V  K  W  Q  K  G  V  Q  D  Y  V  R  S  *  V  K  I  L  G  V  M  G  H  M  C  *  Y  *  I  C  C  *  G  L  T  N  L  F  N  L  Y  W  D  L  K  *  E  C  G  S  E  *  N  L  I  V  S  V  *  I  C  V  Y  *  G  R  Y  E  D  E  L  D  *  I  L  V  L  G  *  V  D  L  D  F  L  W  *  F  W  V  K  N  V  I  L  I  D  S  G  L  *  T  *  I  P  F  R  G  V  S  F  I  R  E  D  L  M  S  S  Y  *  I  *  E  *  *  S  K  N  W  L  W  N  E  K  W  K  F  S  T  S  H  F  T  V  P  F  F  L  I  L  Y  L  G  F  R  V  *  G  Y  N  L  T  C  L  K  F  F  A  F  T  V  L  C  T  T  D  K  M  T  D  L  L  C  R  E  F  G  T  L  T  C  *  F  V  N  L  L  N  T  C  Q  I  *  A  C  S  S  N  I  Y  L  *  L  </second_frame>
            <third_frame>   S  L  Y  T  Q  K  I  H  F  F  V  S  P  N  P  I  S  G  N  P  F  A  P  S  L  H  F  C  T  F  L  V  I  N  L  R  V  S  R  L  I  C  F  *  K  L  Y  C  G  N  R  E  K  I  S  F  F  I  C  M  K  C  *  I  P  L  L  *  *  S  G  K  R  V  F  K  I  M  L  D  H  R  L  K  F  *  V  *  W  A  I  C  V  S  I  R  F  A  A  E  D  *  L  I  C  S  T  C  I  G  I  *  S  K  N  A  V  L  S  R  I  *  L  S  L  Y  K  F  V  Y  T  E  E  D  M  R  M  N  L  I  E  F  W  C  W  V  E  L  I  W  I  F  F  G  D  F  G  *  K  M  L  F  *  L  I  Q  D  S  R  P  R  S  L  F  V  G  F  L  L  F  V  K  T  *  *  V  V  I  E  F  R  S  S  N  P  R  I  G  F  G  M  K  N  G  S  S  R  H  P  I  L  Q  S  P  F  S  *  S  C  I  W  V  S  E  F  K  D  I  T  *  L  V  L  N  F  S  H  L  L  Y  C  A  Q  Q  I  R  *  Q  I  S  S  V  E  N  L  V  L  *  H  A  S  L  *  I  C  *  I  L  V  K  F  K  L  V  Q  V  I  F  I  F  N  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0021O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="80351" PGL_stop="79617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80351" e_stop="79617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="80351" e_stop="79617" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80351" stop="79617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374318" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCGTTATCTTTCTTTTTTATTTATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCGTCCTCTAAGGCAACTATTGAAATTCCGAAAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGTGAATGTGATTGAACAACGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTAACTAAATAAATTTGATAAATATGTTGTTTTGAGATTAAATATGGAAAGACTTGGTGATGAAATCTTGTAACAACCAAAATATTTTAGGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATCTTTCA</gDNA_template>
            <first_frame> P  L  S  F  F  F  I  Y  *  K  E  R  Q  W  H  L  L  T  K  L  L  L  Y  L  P  F  L  Y  S  L  Q  Q  F  L  L  R  H  I  I  F  N  L  N  P  M  H  L  P  M  H  Q  L  N  H  P  H  P  R  P  R  P  R  P  L  R  Q  L  L  K  F  R  K  I  Y  L  S  S  Q  I  L  E  M  Y  P  Y  L  S  T  R  *  W  K  Q  R  W  E  R  Q  K  N  L  S  *  M  *  L  N  N  V  *  R  N  L  I  L  T  Y  T  R  R  I  V  *  R  H  V  N  Q  C  I  K  M  L  *  M  Q  *  R  K  L  K  K  M  *  N  Q  K  N  I  I  K  Q  I  W  I  L  V  Q  *  Q  Q  I  L  I  L  A  M  N  V  L  F  Q  Y  M  E  R  I  L  N  L  G  N  L  I  I  G  F  K  G  L  L  L  S  A  L  I  K  L  V  P  *  L  N  K  F  D  K  Y  V  V  L  R  L  N  M  E  R  L  G  D  E  I  L  *  Q  P  K  Y  F  R  L  T  K  G  T  T  H  Y  M  I  V  F  D  L  S </first_frame>
            <second_frame>  R  Y  L  S  F  L  F  I  K  K  K  D  N  G  I  F  *  Q  N  Y  Y  C  I  Y  H  F  F  I  L  Y  N  N  S  F  *  G  I  *  Y  S  T  *  T  P  C  T  F  P  C  T  N  *  T  I  L  I  L  V  L  V  L  V  L  *  G  N  Y  *  N  S  E  K  Y  T  Y  R  P  K  Y  *  R  C  I  R  I  Y  Q  L  D  D  G  S  N  D  G  K  D  R  R  I  Y  R  E  C  D  *  T  T  S  R  G  T  *  Y  *  H  I  R  D  G  L  S  R  D  M  *  I  S  V  S  R  C  C  R  C  N  E  E  S  *  R  R  C  E  I  K  R  I  L  *  S  R  F  G  Y  *  C  N  N  N  R  Y  *  Y  L  Q  *  M  C  C  F  N  I  W  R  G  Y  *  I  *  A  I  *  *  L  D  S  R  G  C  Y  *  V  P  *  *  N  *  C  L  N  *  I  N  L  I  N  M  L  F  *  D  *  I  W  K  D  L  V  M  K  S  C  N  N  Q  N  I  L  G  *  Q  K  E  Q  H  T  I  *  *  C  L  I  F   </second_frame>
            <third_frame>   V  I  F  L  F  Y  L  L  K  R  K  T  M  A  S  F  N  K  I  I  I  V  F  T  I  S  L  F  F  T  T  I  P  S  K  A  Y  N  I  Q  P  K  P  H  A  P  S  H  A  P  I  K  P  S  S  S  S  S  S  S  S  S  S  K  A  T  I  E  I  P  K  N  I  P  I  V  P  N  T  R  D  V  S  V  F  I  N  S  M  M  E  A  T  M  G  K  T  E  E  F  I  V  N  V  I  E  Q  R  L  E  E  P  D  T  D  I  Y  A  T  D  C  L  E  T  C  K  S  V  Y  Q  D  A  V  D  A  M  K  K  A  E  E  D  V  K  S  K  E  Y  Y  K  A  D  L  D  I  S  A  I  T  T  D  I  D  T  C  N  E  C  A  V  S  I  Y  G  E  D  T  E  F  R  Q  F  D  N  W  I  Q  G  V  A  T  E  C  L  D  K  I  S  A  L  T  K  *  I  *  *  I  C  C  F  E  I  K  Y  G  K  T  W  *  *  N  L  V  T  T  K  I  F  *  V  N  K  R  N  N  T  L  Y  D  S  V  *  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80349" stop="79741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VIFLFYLLKRKTMASFNKIIIVFTISLFFTTIPSKAYNIQPKPHAPSHAPIKPSSSSSSSSSSKATIEIPKNIPIVPNTRDVSVFINSMMEATMGKTEEFIVNVIEQRLEEPDTDIYATDCLETCKSVYQDAVDAMKKAEEDVKSKEYYKADLDISAITTDIDTCNECAVSIYGEDTEFRQFDNWIQGVATECLDKISALTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="87391" PGL_stop="87939"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87391" e_stop="87939"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87391" e_stop="87939" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87391" stop="87918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87391" stop="87843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87474" stop="87939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTTTTTTTTTTCAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTTCGAACGATTATGAATTTATGA</gDNA_template>
            <first_frame> L  F  F  F  F  N  S  K  F  E  M  K  A  T  F  F  Q  P  L  F  K  I  Q  L  P  H  S  T  L  S  R  S  K  S  Q  Y  L  S  L  P  W  R  F  E  L  S  T  D  *  Y  S  *  Q  H  P  A  F  A  S  S  S  S  I  S  L  F  N  Q  S  S  I  S  P  P  N  T  A  G  G  A  T  M  N  R  P  I  W  W  T  G  S  R  V  D  E  E  Q  F  F  F  P  S  T  A  A  T  R  N  S  G  R  S  V  R  R  *  I  Q  V  C  *  M  Y  T  F  V  F  I  L  A  *  N  G  K  I  T  V  I  F  G  F  C  F  D  G  S  G  F  D  I  F  V  I  S  F  V  S  A  *  N  F  V  V  N  H  R  D  L  *  F  C  E  N  *  F  L  R  T  I  M  N  L  * </first_frame>
            <second_frame>  Y  F  F  F  S  I  Q  N  L  K  *  K  Q  L  F  F  N  L  Y  L  K  F  N  F  P  T  P  L  S  P  D  L  N  L  N  I  S  L  F  H  G  D  S  N  Y  L  R  I  D  I  L  S  N  I  Q  L  L  L  H  L  P  L  S  R  S  S  T  N  L  L  F  H  L  L  T  P  P  A  V  P  L  *  T  D  R  Y  G  G  P  V  A  E  S  M  K  N  N  F  F  F  L  P  R  R  R  R  E  I  P  A  D  R  F  V  D  E  Y  K  Y  V  E  C  I  L  L  F  S  F  *  L  R  T  E  K  S  Q  *  Y  L  V  F  V  L  T  D  L  D  L  I  F  L  *  F  R  L  F  Q  L  E  I  L  L  L  I  I  E  I  Y  N  F  A  K  I  N  F  F  E  R  L  *  I  Y   </second_frame>
            <third_frame>   I  F  F  F  Q  F  K  I  *  N  E  S  N  F  F  S  T  S  I  *  N  S  T  S  P  L  H  S  L  Q  I  *  I  S  I  S  L  S  S  M  A  I  R  T  I  Y  G  L  I  F  L  A  T  S  S  F  C  F  I  F  L  Y  L  A  L  Q  P  I  F  Y  F  T  S  *  H  R  R  R  C  H  Y  E  P  T  D  M  V  D  R  *  Q  S  R  *  R  T  I  F  F  S  F  H  G  G  D  A  K  F  R  Q  I  G  S  *  M  N  T  S  M  L  N  V  Y  F  C  F  H  F  S  L  E  R  K  N  H  S  D  I  W  F  L  F  *  R  I  W  I  *  Y  F  C  D  F  V  C  F  S  L  K  F  C  C  *  S  *  R  F  I  I  L  R  K  L  I  S  S  N  D  Y  E  F  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87425" stop="87637"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQLFFNLYLKFNFPTPLSPDLNLNISLFHGDSNYLRIDILSNIQLLLHLPLSRSSTNLLFHLLTPPAVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="94877" PGL_stop="96135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94877" e_stop="95561"/>
            <exon e_start="95953" e_stop="96135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.982"/>
          <exon-only e_score="0.809"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="94877" e_stop="95561" e_length="685"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391"/>
          </intron>
          <exon e_serial="2" e_score="0.809">
            <gDNA_exon_boundary e_start="95953" e_stop="96135" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94877" stop="95194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94886" stop="95346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94907" stop="95561"/>
              <exon start="95953" stop="96046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94907" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94908" stop="95411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94908" stop="95224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94975" stop="95561"/>
              <exon start="95953" stop="96135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTCTCCAGCTTTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACG : GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATTAAAAACTCTTGTATCCACCAAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATCAA</gDNA_template>
            <first_frame> L  I  L  Q  L  F  R  R  G  V  I  Y  F  H  F  E  D  L  I  N  L  L  P  P  L  R  K  Y  H  H  P  Y  E  I  E  F  F  R  K  K  L  K  L  K  I  F  L  K  K  L  I  K  I  R  A  *  R  D  Q  *  S  Y  L  R  L  R  Y  C  L  W  I  N  G  S  R  Y  Y  R  V  T  I  H  R  A  A  S  Y  A  V  A  A  A  A  A  A  V  G  V  L  F  G  D  R  D  *  R  R  S  P  A  V  R  R  R  N  V  R  R  W  R  V  V  V  L  A  G  *  R  I  C  W  F  *  R  C  I  R  F  R  L  D  F  V  E  R  L  *  G  K  I  A  G  I  G  *  *  K  R  G  F  C  R  R  R  E  V  D  I  V  A  V  M  K  W  S  F  M  L  T  R  F  L  V  R  L  R  W  S  A  P  A  P  E  T  *  Q  P  I  R  M  L  W  S  W  R  R  K  C  G  I  S  F  T  V  L  G  S  G  G  A  H  L  N  E  V  K  C  N   : G  L  G  *  I  N  V  Y  R  W  L  N  E  E  E  G  E  V  V  L  F  F  L  K  K  N  L  V  N  S  L  C  N  *  K  L  L  Y  P  P  S  N  P  C  I  I  F  F  N  F  F  V  I  F  S  F  Q  E  S  K  S  </first_frame>
            <second_frame>  *  F  S  S  F  F  G  E  G  *  F  I  S  I  L  K  I  *  *  I  F  F  P  H  S  E  N  I  I  I  L  M  K  S  N  F  F  E  K  N  *  N  *  K  F  F  *  K  N  *  L  K  L  G  H  D  E  T  N  N  H  T  F  A  S  V  T  V  S  G  *  T  A  A  A  I  I  E  *  R  F  I  A  R  R  R  T  R  *  Q  Q  Q  Q  R  R  W  E  C  C  S  E  I  A  I  S  G  G  R  R  R  Y  D  G  G  M  C  G  G  G  V  L  L  S  L  R  D  S  E  F  V  G  S  S  G  V  *  G  S  G  W  T  L  *  K  G  F  E  E  K  S  P  G  S  V  D  E  K  G  A  F  A  G  D  G  K  W  T  L  *  L  *  *  N  G  A  S  C  L  P  D  F  *  S  D  C  D  G  R  R  R  R  R  K  P  S  N  R  *  G  C  F  G  A  G  E  G  N  V  G  *  V  L  R  Y  W  V  L  E  E  P  I  S  T  K  *  N  V  T  :  A  W  D  E  L  M  C  I  G  G  *  M  K  K  R  E  K  L  F  Y  F  F  *  K  K  I  L  *  T  L  F  V  I  K  N  S  C  I  H  Q  A  I  L  V  L  Y  S  S  I  S  L  S  Y  F  H  F  K  N  R  N  Q </second_frame>
            <third_frame>   N  S  P  A  F  S  E  R  G  N  L  F  P  F  *  R  S  N  K  S  S  S  P  T  P  K  I  S  S  S  L  *  N  R  I  F  S  K  K  I  K  I  K  N  F  F  K  K  I  N  *  N  *  G  M  T  R  P  I  I  I  P  S  P  P  L  L  S  L  D  K  R  Q  P  L  L  S  S  N  D  S  S  R  G  V  V  R  G  S  S  S  S  S  G  G  G  S  V  V  R  R  S  R  L  A  E  V  A  G  G  T  T  A  E  C  A  A  V  A  C  C  C  P  C  G  I  A  N  L  L  V  L  A  V  Y  K  V  P  A  G  L  C  R  K  A  L  R  K  N  R  R  D  R  L  M  K  K  G  L  L  P  A  T  G  S  G  H  C  S  C  D  E  M  E  L  H  A  Y  Q  I  S  S  P  I  A  M  V  G  A  G  A  G  N  L  A  T  D  K  D  A  L  E  L  E  K  E  M  W  D  K  F  Y  G  T  G  F  W  R  S  P  S  Q  R  S  E  M  *  R :   L  G  M  N  *  C  V  *  V  V  E  *  R  R  G  R  S  C  S  I  F  F  K  K  K  S  C  K  L  S  L  *  L  K  T  L  V  S  T  K  Q  S  L  Y  Y  I  L  Q  F  L  C  H  I  F  I  S  R  I  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95038" stop="95559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMTRPIIIPSPPLLSLDKRQPLLSSNDSSRGVVRGSSSSSGGGSVVRRSRLAEVAGGTTAECAAVACCCPCGIANLLVLAVYKVPAGLCRKALRKNRRDRLMKKGLLPATGSGHCSCDEMELHAYQISSPIAMVGAGAGNLATDKDALELEKEMWDKFYGTGFWRSPSQRSEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="109042" PGL_stop="113133"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109065" e_stop="109142"/>
            <exon e_start="109608" e_stop="109758"/>
            <exon e_start="109869" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112620"/>
            <exon e_start="112762" e_stop="112869"/>
            <exon e_start="112986" e_stop="113133"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.529" e_score="0.998"/>
          <exon-intron don_prob="0.901" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109065" e_stop="109142" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109608" e_stop="109758" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109869" e_stop="109915" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="112012" e_stop="112620" e_length="609"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.529">
            <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112762" e_stop="112869" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.967">
            <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="112986" e_stop="113133" e_length="148"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109065" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109073" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109085" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109085" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109094" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109618" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111901" stop="111916"/>
              <exon start="112012" stop="112565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112028" stop="112492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112031" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112141" stop="112571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112255" stop="112620"/>
              <exon start="112762" stop="112779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112323" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG : GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG : AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA : ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCTGGAAACT</gDNA_template>
            <first_frame> E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L   : G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A  C  V  W  L  P  *  R  I  S  I  F  F  F  H  L  I  S  E  F  H  K  L  A  C  S  V  Y  L  Y  L  F  F  I  H  G  T  P  V  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  P  S  F  S  S  K  *  S  T  F  C  F  I  I  W  F  R  S  N  A  C  H  S  T  R  T  I  *  W  *  *  :  K  L  F  *  F  I  L  Y  T  N  P  *  E  S  W  T  I  R  V  A  V  I  F  R  V  L  E  I  S  I  *  F  Y  V  N  E  :  I  *  R  I  D  L  K  E  Y  T  R  V  E  G  E  I  V  F  S  K  F  F  N  A  G  C  W  S  C  *  E  R  V  K  C  W  N  C  *  S  I  S  P  D  G  T  S  G  N  </first_frame>
            <second_frame>  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  :  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  V  C  G  C  L  K  G  *  A  F  S  F  F  I  *  F  L  S  F  T  S  *  H  V  L  F  T  S  I  Y  S  S  F  M  A  L  Q  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y  L  P  S  V  Q  S  D  Q  L  S  A  L  S  S  G  S  V  L  T  P  A  T  A  Q  G  L  S  S  G  D  R :   S  S  S  S  S  S  F  T  P  I  H  R  R  A  G  P  S  E  L  Q  S  F  S  E  S  W  R  S  R  F  S  S  M  S  M  K :   Y  K  E  S  I  S  K  N  T  R  E  W  K  E  R  L  F  S  R  S  S  S  M  P  D  A  G  P  V  R  R  E  S  N  V  G  I  A  S  L  S  H  L  M  E  H  L  E  T </second_frame>
            <third_frame>   K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R :   *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  M  C  V  A  A  L  K  D  K  H  F  L  F  S  S  D  F  *  V  S  Q  A  S  M  F  C  L  P  L  F  I  L  H  S  W  H  S  S  Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L  T  F  L  Q  F  K  V  I  N  F  L  L  Y  H  L  V  P  F  *  R  L  P  Q  H  K  D  Y  L  V  V  I   : E  A  L  L  V  H  P  L  H  Q  S  I  G  E  L  D  H  Q  S  C  S  H  F  Q  S  P  G  D  L  D  L  V  L  C  Q  *   : N  I  K  N  R  S  Q  R  I  H  E  S  G  R  R  D  C  F  L  E  V  L  Q  C  R  M  L  V  L  L  G  E  S  Q  M  L  E  L  L  V  Y  L  T  *  W  N  I  W  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112187" stop="112620"/>
                    <exon start="112762" stop="112869"/>
                    <exon start="112986" stop="113133"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVLFTSIYSSFMALQLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPYLPSVQSDQLSALSSGSVLTPATAQGLSSGDRSSSSSSFTPIHRRAGPSELQSFSESWRSRFSSMSMKYKESISKNTREWKERLFSRSSSMPDAGPVRRESNVGIASLSHLMEHLET</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109132" stop="109142"/>
                    <exon start="109608" stop="109758"/>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112144"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIRFVRFLGMDEVKKSEGHMTSPAAFVEGGIQDACDDACSICLEAFCESDPPSVTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHVCGCLKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109060" e_stop="109142"/>
            <exon e_start="109608" e_stop="109758"/>
            <exon e_start="109869" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112120"/>
            <exon e_start="112232" e_stop="112620"/>
            <exon e_start="112762" e_stop="112869"/>
            <exon e_start="112986" e_stop="113126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.529" e_score="0.992"/>
          <exon-intron don_prob="0.901" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109060" e_stop="109142" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109608" e_stop="109758" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109869" e_stop="109915" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112012" e_stop="112120" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="112232" e_stop="112620" e_length="389"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.529">
            <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112762" e_stop="112869" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.967">
            <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.972">
            <gDNA_exon_boundary e_start="112986" e_stop="113126" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109060" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109064" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109065" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109071" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109073" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109077" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109094" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109617" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109618" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109618" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112255" stop="112620"/>
              <exon start="112762" stop="112779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112323" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG : GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG : AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA : ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCT</gDNA_template>
            <first_frame> F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  :  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y  L  P  S  V  Q  S  D  Q  L  S  A  L  S  S  G  S  V  L  T  P  A  T  A  Q  G  L  S  S  G  D  R :   S  S  S  S  S  S  F  T  P  I  H  R  R  A  G  P  S  E  L  Q  S  F  S  E  S  W  R  S  R  F  S  S  M  S  M  K :   Y  K  E  S  I  S  K  N  T  R  E  W  K  E  R  L  F  S  R  S  S  S  M  P  D  A  G  P  V  R  R  E  S  N  V  G  I  A  S  L  S  H  L  M  E  H   </first_frame>
            <second_frame>  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R :   *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L  T  F  L  Q  F  K  V  I  N  F  L  L  Y  H  L  V  P  F  *  R  L  P  Q  H  K  D  Y  L  V  V  I   : E  A  L  L  V  H  P  L  H  Q  S  I  G  E  L  D  H  Q  S  C  S  H  F  Q  S  P  G  D  L  D  L  V  L  C  Q  *   : N  I  K  N  R  S  Q  R  I  H  E  S  G  R  R  D  C  F  L  E  V  L  Q  C  R  M  L  V  L  L  G  E  S  Q  M  L  E  L  L  V  Y  L  T  *  W  N  I  </second_frame>
            <third_frame>   P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L   : G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  P  S  F  S  S  K  *  S  T  F  C  F  I  I  W  F  R  S  N  A  C  H  S  T  R  T  I  *  W  *  *  :  K  L  F  *  F  I  L  Y  T  N  P  *  E  S  W  T  I  R  V  A  V  I  F  R  V  L  E  I  S  I  *  F  Y  V  N  E  :  I  *  R  I  D  L  K  E  Y  T  R  V  E  G  E  I  V  F  S  K  F  F  N  A  G  C  W  S  C  *  E  R  V  K  C  W  N  C  *  S  I  S  P  D  G  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109132" stop="109142"/>
                    <exon start="109608" stop="109758"/>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112120"/>
                    <exon start="112232" stop="112620"/>
                    <exon start="112762" stop="112869"/>
                    <exon start="112986" stop="113124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIRFVRFLGMDEVKKSEGHMTSPAAFVEGGIQDACDDACSICLEAFCESDPPSVTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPYLPSVQSDQLSALSSGSVLTPATAQGLSSGDRSSSSSSFTPIHRRAGPSELQSFSESWRSRFSSMSMKYKESISKNTREWKERLFSRSSSMPDAGPVRRESNVGIASLSHLMEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109042" e_stop="109142"/>
            <exon e_start="109608" e_stop="109758"/>
            <exon e_start="109869" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="111994" e_stop="112120"/>
            <exon e_start="112232" e_stop="112620"/>
            <exon e_start="112762" e_stop="112869"/>
            <exon e_start="112986" e_stop="113126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.941"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.979"/>
          <exon-intron don_prob="0.560" acc_prob="0.181" e_score="1.000"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="0.953"/>
          <exon-intron don_prob="0.981" acc_prob="0.529" e_score="0.992"/>
          <exon-intron don_prob="0.901" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="109042" e_stop="109142" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="109608" e_stop="109758" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.979">
            <gDNA_exon_boundary e_start="109869" e_stop="109915" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.560" acc_prob="0.181">
            <gDNA_intron_boundary i_start="111917" i_stop="111993" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="111994" e_stop="112120" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="112232" e_stop="112620" e_length="389"/>
          </exon>
          <intron i_serial="6" don_prob="0.981" acc_prob="0.529">
            <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="112762" e_stop="112869" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.967">
            <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116"/>
          </intron>
          <exon e_serial="8" e_score="0.972">
            <gDNA_exon_boundary e_start="112986" e_stop="113126" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109042" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="111994" stop="112120"/>
              <exon start="112232" stop="112321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109073" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112255" stop="112620"/>
              <exon start="112762" stop="112779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112323" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG : GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG : AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA : ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCT</gDNA_template>
            <first_frame> S  S  R  I  S  R  F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  :  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   *  L  P  S  F  S  Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y  L  P  S  V  Q  S  D  Q  L  S  A  L  S  S  G  S  V  L  T  P  A  T  A  Q  G  L  S  S  G  D  R :   S  S  S  S  S  S  F  T  P  I  H  R  R  A  G  P  S  E  L  Q  S  F  S  E  S  W  R  S  R  F  S  S  M  S  M  K :   Y  K  E  S  I  S  K  N  T  R  E  W  K  E  R  L  F  S  R  S  S  S  M  P  D  A  G  P  V  R  R  E  S  N  V  G  I  A  S  L  S  H  L  M  E  H   </first_frame>
            <second_frame>  L  L  E  F  L  G  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R :   *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  D  F  P  L  S  V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L  T  F  L  Q  F  K  V  I  N  F  L  L  Y  H  L  V  P  F  *  R  L  P  Q  H  K  D  Y  L  V  V  I   : E  A  L  L  V  H  P  L  H  Q  S  I  G  E  L  D  H  Q  S  C  S  H  F  Q  S  P  G  D  L  D  L  V  L  C  Q  *   : N  I  K  N  R  S  Q  R  I  H  E  S  G  R  R  D  C  F  L  E  V  L  Q  C  R  M  L  V  L  L  G  E  S  Q  M  L  E  L  L  V  Y  L  T  *  W  N  I  </second_frame>
            <third_frame>   F  S  N  F  *  V  P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L   : G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  L  T  S  L  F  Q  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  P  S  F  S  S  K  *  S  T  F  C  F  I  I  W  F  R  S  N  A  C  H  S  T  R  T  I  *  W  *  *  :  K  L  F  *  F  I  L  Y  T  N  P  *  E  S  W  T  I  R  V  A  V  I  F  R  V  L  E  I  S  I  *  F  Y  V  N  E  :  I  *  R  I  D  L  K  E  Y  T  R  V  E  G  E  I  V  F  S  K  F  F  N  A  G  C  W  S  C  *  E  R  V  K  C  W  N  C  *  S  I  S  P  D  G  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111998" stop="112120"/>
                    <exon start="112232" stop="112620"/>
                    <exon start="112762" stop="112869"/>
                    <exon start="112986" stop="113124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSFSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPYLPSVQSDQLSALSSGSVLTPATAQGLSSGDRSSSSSSFTPIHRRAGPSELQSFSESWRSRFSSMSMKYKESISKNTREWKERLFSRSSSMPDAGPVRRESNVGIASLSHLMEH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109132" stop="109142"/>
                    <exon start="109608" stop="109758"/>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="111994" stop="111997"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIRFVRFLGMDEVKKSEGHMTSPAAFVEGGIQDACDDACSICLEAFCESDPPSVTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="111121" e_stop="111159"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112120"/>
            <exon e_start="112232" e_stop="112620"/>
            <exon e_start="112762" e_stop="112869"/>
            <exon e_start="112986" e_stop="113126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.544" acc_prob="0.990" e_score="0.897"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="0.936"/>
          <exon-intron don_prob="0.981" acc_prob="0.529" e_score="0.992"/>
          <exon-intron don_prob="0.901" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="111121" e_stop="111159" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.544" acc_prob="0.990">
            <gDNA_intron_boundary i_start="111160" i_stop="111853" i_length="694"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.936">
            <gDNA_exon_boundary e_start="112012" e_stop="112120" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="112232" e_stop="112620" e_length="389"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.529">
            <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112762" e_stop="112869" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.967">
            <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="112986" e_stop="113126" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111121" stop="111159"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112255" stop="112620"/>
              <exon start="112762" stop="112779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112323" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG : AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA : ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCT</gDNA_template>
            <first_frame> L  P  S  H  V  P  Q  A  I  Q  F  H  Q  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  P  S  F  S  S  K  *  S  T  F  C  F  I  I  W  F  R  S  N  A  C  H  S  T  R  T  I  *  W  *  *  :  K  L  F  *  F  I  L  Y  T  N  P  *  E  S  W  T  I  R  V  A  V  I  F  R  V  L  E  I  S  I  *  F  Y  V  N  E  :  I  *  R  I  D  L  K  E  Y  T  R  V  E  G  E  I  V  F  S  K  F  F  N  A  G  C  W  S  C  *  E  R  V  K  C  W  N  C  *  S  I  S  P  D  G  T  S </first_frame>
            <second_frame>  F  L  H  M  C  R  R  R  S  S  F  T  R :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y  L  P  S  V  Q  S  D  Q  L  S  A  L  S  S  G  S  V  L  T  P  A  T  A  Q  G  L  S  S  G  D  R :   S  S  S  S  S  S  F  T  P  I  H  R  R  A  G  P  S  E  L  Q  S  F  S  E  S  W  R  S  R  F  S  S  M  S  M  K :   Y  K  E  S  I  S  K  N  T  R  E  W  K  E  R  L  F  S  R  S  S  S  M  P  D  A  G  P  V  R  R  E  S  N  V  G  I  A  S  L  S  H  L  M  E  H   </second_frame>
            <third_frame>   S  F  T  C  A  A  G  D  P  V  S  P   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L  T  F  L  Q  F  K  V  I  N  F  L  L  Y  H  L  V  P  F  *  R  L  P  Q  H  K  D  Y  L  V  V  I   : E  A  L  L  V  H  P  L  H  Q  S  I  G  E  L  D  H  Q  S  C  S  H  F  Q  S  P  G  D  L  D  L  V  L  C  Q  *   : N  I  K  N  R  S  Q  R  I  H  E  S  G  R  R  D  C  F  L  E  V  L  Q  C  R  M  L  V  L  L  G  E  S  Q  M  L  E  L  L  V  Y  L  T  *  W  N  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111122" stop="111159"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112120"/>
                    <exon start="112232" stop="112620"/>
                    <exon start="112762" stop="112869"/>
                    <exon start="112986" stop="113124"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHMCRRRSSFTRCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPYLPSVQSDQLSALSSGSVLTPATAQGLSSGDRSSSSSSFTPIHRRAGPSELQSFSESWRSRFSSMSMKYKESISKNTREWKERLFSRSSSMPDAGPVRRESNVGIASLSHLMEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="109047" e_stop="109142"/>
            <exon e_start="109608" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112120"/>
            <exon e_start="112232" e_stop="112620"/>
            <exon e_start="112762" e_stop="112869"/>
            <exon e_start="112986" e_stop="113126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.529" e_score="0.992"/>
          <exon-intron don_prob="0.901" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109047" e_stop="109142" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109608" e_stop="109915" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="112012" e_stop="112120" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="112232" e_stop="112620" e_length="389"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.529">
            <gDNA_intron_boundary i_start="112621" i_stop="112761" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="112762" e_stop="112869" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.901" acc_prob="0.967">
            <gDNA_intron_boundary i_start="112870" i_stop="112985" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="0.972">
            <gDNA_exon_boundary e_start="112986" e_stop="113126" e_length="141"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109047" stop="109142"/>
              <exon start="109608" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112255" stop="112620"/>
              <exon start="112762" stop="112779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112323" stop="112620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112455" stop="112620"/>
              <exon start="112762" stop="112869"/>
              <exon start="112986" stop="113126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249300" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTACCTTCCTTCAGTTCAAAGTGATCAACTTTCTGCTTTATCATCTGGTTCCGTTCTAACGCCTGCCACAGCACAAGGACTATCTAGTGGTGATAG : AAGCTCTTCTAGTTCATCCTTTACACCAATCCATAGGAGAGCTGGACCATCAGAGTTGCAGTCATTTTCAGAGTCCTGGAGATCTCGATTTAGTTCTATGTCAATGAA : ATATAAAGAATCGATCTCAAAGAATACACGAGAGTGGAAGGAGAGATTGTTTTCTCGAAGTTCTTCAATGCCGGATGCTGGTCCTGTTAGGAGAGAGTCAAATGTTGGAATTGCTAGTCTATCTCACCTGATGGAACATCT</gDNA_template>
            <first_frame> S  N  F  *  V  P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L  G  E  C  *  R  L  P  V  V  K  C  L  I  F  V  M  L  C  T  L  L  P  *  *  L  *  *  C  V  Y  I  C  F  F  L  L  *  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y  L  P  S  V  Q  S  D  Q  L  S  A  L  S  S  G  S  V  L  T  P  A  T  A  Q  G  L  S  S  G  D  R :   S  S  S  S  S  S  F  T  P  I  H  R  R  A  G  P  S  E  L  Q  S  F  S  E  S  W  R  S  R  F  S  S  M  S  M  K :   Y  K  E  S  I  S  K  N  T  R  E  W  K  E  R  L  F  S  R  S  S  S  M  P  D  A  G  P  V  R  R  E  S  N  V  G  I  A  S  L  S  H  L  M  E  H   </first_frame>
            <second_frame>  R  I  S  R  F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  V  N  A  K  D  C  L  *  L  N  V  *  Y  L  *  C  Y  V  L  Y  Y  H  S  D  F  D  S  V  Y  I  S  V  F  F  F  C  R  *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L  T  F  L  Q  F  K  V  I  N  F  L  L  Y  H  L  V  P  F  *  R  L  P  Q  H  K  D  Y  L  V  V  I   : E  A  L  L  V  H  P  L  H  Q  S  I  G  E  L  D  H  Q  S  C  S  H  F  Q  S  P  G  D  L  D  L  V  L  C  Q  *   : N  I  K  N  R  S  Q  R  I  H  E  S  G  R  R  D  C  F  L  E  V  L  Q  C  R  M  L  V  L  L  G  E  S  Q  M  L  E  L  L  V  Y  L  T  *  W  N  I  </second_frame>
            <third_frame>   E  F  L  G  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R  *  M  L  K  T  A  C  S  *  M  F  D  I  C  N  V  M  Y  S  I  T  I  V  T  L  I  V  C  I  Y  L  F  F  S  S  V  G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  P  S  F  S  S  K  *  S  T  F  C  F  I  I  W  F  R  S  N  A  C  H  S  T  R  T  I  *  W  *  *  :  K  L  F  *  F  I  L  Y  T  N  P  *  E  S  W  T  I  R  V  A  V  I  F  R  V  L  E  I  S  I  *  F  Y  V  N  E  :  I  *  R  I  D  L  K  E  Y  T  R  V  E  G  E  I  V  F  S  K  F  F  N  A  G  C  W  S  C  *  E  R  V  K  C  W  N  C  *  S  I  S  P  D  G  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112120"/>
                    <exon start="112232" stop="112620"/>
                    <exon start="112762" stop="112869"/>
                    <exon start="112986" stop="113124"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>855</number_coding_nucleotides>
                  <number_encoded_amino_acids>285</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPYLPSVQSDQLSALSSGSVLTPATAQGLSSGDRSSSSSSFTPIHRRAGPSELQSFSESWRSRFSSMSMKYKESISKNTREWKERLFSRSSSMPDAGPVRRESNVGIASLSHLMEH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 140 chains have been computed
$ 
$ memory statistics:
$ 340064 bytes spliced alignments in total
$ 118 spliced alignments have been stored
$ 2881 bytes was the average size of a spliced alignment
$ 29952 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1872 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 149 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:03:32
-->
