<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:06:13"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601119" ref_strand="+" ref_description="SGN-U601119 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caggaccaagtgcgcaaaggtgtcacattctaacatgtttgtgttctccctttcagttaggggctttcagagttacatatctgtatcagaatcaatgaagttataatgtgtttaatgtgtcgctttcttcctgttgaccacctgatttataagcctttgcagctttatattttaattcaattccaacaaacttctacaattggaagaatcggtattttgaagtgcatgtcttgcataatttaatgcgatatttgagcagatataagttgtcatctctcggactctcgcaacttcattttcaccattatgaccttcagctgtttagtaatatagtaaagttctgagagacaatttgtattcctctacattactagaatgttcttccatatgccccctctatttcatatttttctctcaatgtgtacttcaactaacttagggttcatgtggttaattaagaattatagttcaatttgtaggttaattagcacaatatatacataagccaaatgagcttaaaataatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="1877" stop="3002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2176" g_stop="2702" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U601119" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2176" e_stop="2702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGACCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</genome_strand>
        <mrna_strand>CAGGACCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTA-GGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTTCACCATTATGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567532" ref_strand="+" ref_description="SGN-U567532 Tomato 200607#2 [12 ESTs aligned] (*GB) gi|195624052|gb|ACG33856.1| (e_value=7e-75) hypothetical; (*ATH) AT3G58470.1 (e_value=7e-72) | Symbol: None | expressed protein, several hypothetical proteins - Saccharomyces cerevisiae | chr3:21637648-21639546 REVERSE | Aliases: F14P22.60; (*SWP) sp|Q8WVE0|N6MT2_HUMAN (e_value=2e-44) N(6)-adenine-specific DNA methyltransferase 2 OS=Homo sapiens GN=N6AMT2; ">
      <seq>gggggggtttagcaaacattacactttttacactaaaatggagacagcgagagacaccgtacagcacgacgccgttctgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaggagttccttgctgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgtgaaacagctgaaactgtcgctaatgaagtccttaatctctgtcgatcgattgattcgccggcgattgcctgcattgcttgtcccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatcttccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagttgctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtgaagtgcaaagtggtagggcttccgagctcttgggtttacgtccatgcgcttttaggccagatcactccagcaaactaggcaatgaatttcgactgtttacaaactatgacccagggacaaggctaggtggctgggagcaggtgtaacaaacacttctccaattggaaatcttcttctccaaagaaaccgtaggttgacattggtttgcaatagaagttttttcaaacatactttgaatctacacatccttccatggaatatcatctctaaatcttacctaaacatatctgaaagagtacaaaatattactatgattatatagttgtatcttgtatgtattctggtttcgcttgagttacttgtttctttctataggaaccatttaaggtcctgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7347" stop="11478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7645" g_stop="7999" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="514" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10361" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="596" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10775" g_stop="11181" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="995" r_length="399" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U567532" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1003</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7645" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10361"/>
          <exon e_start="10775" e_stop="11181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGGGTTTAGCAAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCTCTGCCTGTGTTCATTCTTCATGGTTGTCATCAAACTGTTCACTAATTTTATTAGTTGCAAACATTATGTTGATGAAAAAGTTGAAACTATCAAATGAGTTAGCATCAAGGTTTATCGATTTTCAGACGCCTCCTAAGCAAAAAGAGGAACTTTTTTTGAAGCAGAAATTACTGAAGAAAAGAAAGGAGAAAGAGTGGAGAAAATGAAGAAGGATATCCTGTCTTTAAAATAACCAGAGTAAATATGCCTCAAATGTTATCACTTCTCTTTCTCTTTTGGACATGCAGGTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCATAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCTAAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAGGTCCTGGAA</genome_strand>
        <mrna_strand>GGGGGGGTTTAGCAAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCGTAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCT-AA--A---TC--TTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTATATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAGGTCCTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571733" ref_strand="+" ref_description="SGN-U571733 Tomato 200607#2 [14 ESTs aligned] (*GB) gi|157349969|emb|CAO39868.1| (e_value=9e-92) unnamed; (*ATH) AT3G58460.1 (e_value=2e-87) | Symbol: None | rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain | chr3:21634160-21637420 REVERSE | Aliases: F14P22.50; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=2e-86) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460; ">
      <seq>aaattggaaatctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattgttggttgcccataatccccttcatccttatccatactttatggacgagtgtgctataggtttctcagggatcttattttcaatgattgtgatggagacaagtctcagtggggcccaaactagaagtgtgtttgggctttttaatgtgccagctaaatggtatgcattgatcttactggtggtttttcagcttgttatgactaatgtctctttacttggacatctttgtggtattttgtcctggatttgcatatacatatggattgttcaatgtcttaatacctgggacatctttcttctcggctattgaatcttccacttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13649" stop="17676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13949" g_stop="14019" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="237" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="541" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="574" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17053" g_stop="17144" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="667" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160">
            <donor d_prob="0.837" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17305" g_stop="17376" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="739" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U571733" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13949" e_stop="14019"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17144"/>
          <exon e_start="17305" e_stop="17376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGT-CTGGATTTGCATGTAAGTTACTTCCATTATGCTGGACCCTCTTCAAGTTTTTCAAATTCTATTCTATGTTATTTTTGGTATCATGATAATTATATGAACAATCTTTATATATTTGTGGTCGCTTAACTTATAATTTTTTTTCTTTTTTCCTTCTTTTTCTTGATGGTACCAGATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</genome_strand>
        <mrna_strand>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG............................................................................................GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCCTGGATTTGCAT................................................................................................................................................................ATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589744" ref_strand="+" ref_description="SGN-U589744 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349969|emb|CAO39868.1| (e_value=3e-43) unnamed; (*ATH) AT3G58460.1 (e_value=8e-44) | Symbol: None | rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain | chr3:21634160-21637420 REVERSE | Aliases: F14P22.50; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=7e-43) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460; ">
      <seq>gctctgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggtaggacatgtgtggcttcttgttcaattttatacaagattatatgtgcactcccaaagttggacggcgtagttgttcgctaaagccaagcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgtcttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggattttcacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaagattatgggatcagtgcgcctgttatatataattgttctgttggccattagcaatgccttactccatcttcttatagcattggttggttgcccataatcccccttcatccttatccatacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13660" stop="16887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13959" g_stop="14019" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15095" i_length="1076">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15096" g_stop="15184" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="150" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15185" i_stop="15379" i_length="195">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="316" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16369" g_stop="16587" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="537" r_length="221" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U589744" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13959" e_stop="14019"/>
          <exon e_start="15096" e_stop="15184"/>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATT-GTTGGTTGCCCATAAT-CCCCTTCATCCTTATCCATACTTTA</genome_strand>
        <mrna_strand>GCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAA...................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAAGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGGTTGGTTGCCCATAATCCCCCTTCATCCTTATCCATACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589745" ref_strand="+" ref_description="SGN-U589745 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349969|emb|CAO39868.1| (e_value=5e-24) unnamed; (*ATH) AT3G58460.1 (e_value=1e-25) | Symbol: None | rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain | chr3:21634160-21637420 REVERSE | Aliases: F14P22.50; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=9e-25) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460; ">
      <seq>tgaagaagaagaagaagaaaaaactcagcgaaaatgagaccaaatattgtttctgaggcgggactacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcaatagtggttgtttgtgggataatatacttggtttgccttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaaggtaggttcacttatagtgctgtttttccttacttaaaaaaacaaggtgtacatatatagtgctgctgatacattaaaatgtgccttttaaaaagaaattctgcctgcactcaaattactctattcttagtggaaagactaatttgatggaatcttgtcaactatttgaggataattatacattgctattgcttagtgatcattgatgagttgtttggggggtggtttcacttagagtgctgtttttccttcctaaaaaaacaaggtttgcatatatagtgctgctcatacatcaaaatgtgcctgcactgaaattgctctattcttagctgaaaganaaatttgatgaaacttgtcaacgattaggataattatacattgctattgcttagtaatcattgatgagttnnttggggganngggggggagcaatgtggctgaggnngtnantttgnantaggaactactttctgcctatcaattgatcaatgtcttnagttgntcactttctttganantttgnannntactctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="13663" stop="16356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13963" g_stop="14019" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15380" g_stop="16079" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="758" r_length="701" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U589745" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U589745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13963" e_stop="14019"/>
          <exon e_start="15380" e_stop="16079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAGGTATTGTTTTTCTCATTATTATCATACTTAGATCTATAAGTTGTTCATATTGTATGTACTGAAATGTCAATGTAGATGCTAGGGTTTTGATTGAAGTTAGGAATTTGGTGAGGTCTTAAATATGTAGTGAAAGTGCTTTGATTTTTGAGTTTTGAATCTCTGATCATGTTATTTATGGAGAAATAGAGTTAATTGAGGTTAATTTTTTAGCTTCATTTGGAAATTATAGTGATTTTCATGATGGGGAAGTTAGAAAAGTGGTGTGATTTTAAAGGTGTTGAGGAAATGCTTGGTTTTTGAATTCTGAAGCTCTGATCATGTTATTTTTGGAGAAAAGAGTAAATTGAGGTTAACTTTTAGCTTCATTTGGAAATTCTAGTGATTTTCATGATGGGGGAGTTAGGAAAGTAGGGTGTAGTGGAAATGCTTGATTTTTTATTCTGAATCTCTGATCATGTTATTTATGGAGAGACAGAGTAAATTGAGGTTGTTATTTTAGCTTCATACGGAAATTATAGTGATTTTCATGATGGGAGAGTTAGAAAAGTAGTGGCTTGATTTTTTATTTTGAATTTCTGATCATGCATTTATGGAGAAATAGAGTAAATAGAGATTATTTTTAGCTTCATTTGGAAATTATATGGGATTTTCATGATGGTTAAGTTAGTAAATGCACTGGGGTTTTAAAGATGTAGTGGAAATGCTTGATTTCTGAATTCTGAATCTCTGGTCATTTTTATGGAGAAATGGAGTAAATAGAGGTTATTTTCTTAGCTTCATTTGAAAGATCTTCATGACAAGGAAGTTAGTTTTCATTGTTGGTCATTTATTGAGGGACTATTTTTGGGAAATGGGGGTACTCTGTTTAGTTTATGTAACTGCAACGCATGCAACATAAAATGATGATAGTACGATCAATTTCAGACTATGTTGTTGATTTCAGCTGGCAACTATGACCTTTCAGTTTGGGTGGGCACAAGTAGACACTTAGTTTATGTATAAAATTGAACAAATAAACACATTCATCCTACATGACAATTTTGTGTCCTACTTGATGTCCTATATGTTTATGTCAGGTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAAGTTAAGGGTCATATTTATGTATTATGCCCAAAAAAGAAGAGAACTTGTACTCTACAAATTCCTACATTAAACAACTAAAATGTCACATATTTCTTAATACTTCATAATGCCTAGCTTGGACATTGAAAGCAAGACAAGAATCTGTGGGAGAAGTAGCTTTTACGTTAACTCTAACTTGTTCCAATTTGTTTGTAGGCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGG-GGTGGGGGGAGCAATGTGGCTGAGGTGGTTA-TTTG-AGTAGG-ACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTC</genome_strand>
        <mrna_strand>TGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGCCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTACTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGANAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACATTGCTATTGCTTAGTAATCATTGATGAGTTNNTTGGGGGANNGGGGGGGAGCAATGTGGCTGAGGNNGTNANTTTGNANTAGGAACTACTTTCTGCCTATCAATTGATCAATGTCTTNAGTTGNTCACTTTC-TTTG-ANANTTTG-NANNNTACTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594967" ref_strand="+" ref_description="SGN-U594967 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349969|emb|CAO39868.1| (e_value=5e-13) unnamed; (*ATH) AT3G58460.1 (e_value=2e-12) | Symbol: None | rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain | chr3:21634160-21637420 REVERSE | Aliases: F14P22.50; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=2e-11) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460; ">
      <seq>gagtgctttctggaaatatttgggagaacctttcttcgtggatgccacagagagagagctctctctctgctcagccggtgacagatgatagcaggtttcctgggagaggaagaactctgagttcccagaccaccacgactaatcatgattcaacgttacaggctaggctcctggatggtagcagcagccctgagcgtagttcacctactgctacaataggtggagagcggagcttagctggaaggtgctagaaacagactgttattacatgctaaattgttaatactcatatatctgttttgtatttgactaaatcattggttggtgcactaagatggatccgttttagttatattttcatgtgctgctgaaactgctctccagttgaacggtttgctgtaaaacgaggtgtttaaattggttgatccagtaaccaagtttaagttatatcgctatagaaaggaaaagctggattttcttcaatccgttcacaaaatacaattcctatgattcttttttttctctggataggttcttctggattttctgatttctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="17872" stop="19378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18171" g_stop="18244" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18600" g_stop="19078" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="558" r_length="484" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U594967" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18171" e_stop="18244"/>
          <exon e_start="18600" e_stop="19078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAGGTATGACAGATTATTGAAACTTACTCATCCGATATGTCCCATTGACTGGTTAGAAAGAGTTGAGAGGCTTCCTTTTCTTGTCAGCAGAAATTTCTTTTCTTGTTAAGTAGAGTAGATATGCAATGGCGCTTGATCTATAATGGGTTGTGAACAAGGAGGAATTGATACCATTTTATCTGTGTATTGATGAGTCTCTCATATGTATCAATCAACCCTTCTCTTGAAGAATTTTCAACTGCACAACTGCTTAATAGACTTACCTAGTTCTCTTGTCTGTGTGGCCTAATGTATAAATAAGAACAAAAAACATGGATTATAATGAAGTAGTTAATATATTACTTTGTTCAAATTGCAGCCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACT--ATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGT-AAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGA-T-TTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATC</genome_strand>
        <mrna_strand>GAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACGACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGGTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTATTACATGCTAAATTGTTAATACTCATATATCTGTTTTGTATTTGACTAAATCATTGGTTGGTGCACTAAGATGGATCCGTTTTAGTTATATTTTCATGTGCTGCTGAAACTGCTCTCCAGTTGAACGGTTTGCTGTAAAACGAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTATAGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCACAAAATACAATTCCTATGATTCTTTTTTTTCTCTGGATAGGTTCTTCTGGATTTTCTGATTTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582721" ref_strand="-" ref_description="SGN-U582721 Tomato 200607#2 [6 ESTs aligned] (*GB) gi|147773437|emb|CAN73436.1| (e_value=2e-26) hypothetical; (*ATH) AT3G58460.1 (e_value=5e-25) | Symbol: None | rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein, contains Pfam profiles PF01694: Rhomboid family, PF00627: UBA/TS-N domain | chr3:21634160-21637420 REVERSE | Aliases: F14P22.50; (*SWP) sp|Q8LB17|Y3846_ARATH (e_value=4e-24) Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460; ">
      <seq>tcgtggatgccacagagagagagctctctctctgctcagccggtgacagatgatagcaggtttcctgggagaggaagaactctgagttcccagaccaccaccactaatcatgattcaacgttacaggctaggctcctggatggtagcagcagccctgagcgtagttcacctactgctacaatagctggagagcggagcttagctggaagactatcagcagttgatactaccaccacagctacaagaccgctaggacagcaggcttccattccctcagatgaagaagttcagaaacttgttgcaatgggttttgagaagacacaagtagaagttgcactggctgcagccgaaggggacttgaatgttgctgtggaaattttaatgagccaacagggttaatatgaaaggatataacatcaagatttgactcaaaaagccgaggctctgcaaaactagtaatctaattcctcgagccctcgttgttttcctcttctttttggttgtatataatcttacagcaaatttacacaattcttagagagatggaagaccttcttagtgtgtgatttacgcctaatccccataaaacagagatgaattgtatatctaccttcatgattttagatgctgcaatatcaatgaatcattttatatttaaaaaaaaaaaaaaaaaaaaaccccgggtttttttttttttttttttttttttttttttcaaaaaaaaaaaattttttttttttttaaaaaggggggggaaatatattttttaaaaacccccttttttttttgcccaaaaaaaccccccccccactatttttaccccccccacccccccaccgaaaatactccggtggtattaccccgggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="17906" stop="62496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18206" g_stop="18244" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18600" g_stop="18769" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="209" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19239" g_stop="19290" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="261" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19369" g_stop="19425" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="318" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19551" g_stop="19625" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="393" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19709" g_stop="19971" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="656" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="19972" i_stop="20071" i_length="100">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.698" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="20072" g_stop="20110" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="693" r_length="37" r_score="0.615"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="20111" i_stop="20816" i_length="706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="20817" g_stop="20839" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="716" r_length="23" r_score="0.783"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="20840" i_stop="21063" i_length="224">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="21064" g_stop="21074" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="727" r_length="11" r_score="0.909"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="21075" i_stop="21442" i_length="368">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="21443" g_stop="21591" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="728" r_stop="869" r_length="142" r_score="0.523"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U582721" ref_strand="-">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582721" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18206" e_stop="18244"/>
          <exon e_start="18600" e_stop="18769"/>
          <exon e_start="19239" e_stop="19290"/>
          <exon e_start="19369" e_stop="19425"/>
          <exon e_start="19551" e_stop="19625"/>
          <exon e_start="19709" e_stop="19971"/>
          <exon e_start="20072" e_stop="20110"/>
          <exon e_start="20817" e_stop="20839"/>
          <exon e_start="21064" e_stop="21074"/>
          <exon e_start="21443" e_stop="21591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAGGTATGACAGATTATTGAAACTTACTCATCCGATATGTCCCATTGACTGGTTAGAAAGAGTTGAGAGGCTTCCTTTTCTTGTCAGCAGAAATTTCTTTTCTTGTTAAGTAGAGTAGATATGCAATGGCGCTTGATCTATAATGGGTTGTGAACAAGGAGGAATTGATACCATTTTATCTGTGTATTGATGAGTCTCTCATATGTATCAATCAACCCTTCTCTTGAAGAATTTTCAACTGCACAACTGCTTAATAGACTTACCTAGTTCTCTTGTCTGTGTGGCCTAATGTATAAATAAGAACAAAAAACATGGATTATAATGAAGTAGTTAATATATTACTTTGTTCAAATTGCAGCCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACTATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGTAAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGATTTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATCTTGATCAAAGTAAAGCCTCCAATTACCATAATTACCTGGCGTTCTTATTGTGGGTCGAGCTTGAATGTTTGATAGCTCAACTTTATTGTTAAAACTAAGAGCTTGGTGTCTGTGATTTGCTCTAAACACAGTTATATTTTGATTCTGTGTGACATCTCAGACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAGGTATATGACCTGAACTTGGACCACTTGCTAAGTGTTTATGTTTATTATCGTTAGTGCTAAAGTTATTTTTGCATATAGGCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAGGTACAGTTGTTTGAATGCATCACTTCCTTATAATTTGAGGAGCACAAATATTATCACTTATCACAGCTTTCTGAGATATATCTTGCAAATTAACTTCTAGATCGCTAATAGTCTTGATTTCTCAGACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAGGTACTTCTTTTCGGGTGTTATTAATCGCAGTCATAAAGGGACTCGTCATTCTTAACGAATCTTTCAAAATGCCTCATATGCAGGGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTTTCTTAGCCTATACCCAATGTGAGAATGAGTCCTTTTTCTCTTCTTTTAATTACAATCCCGTGCTAGTATAACTCACTGCCTATCAGTTATAATATTATAGACTAAAAACACTGCTAAATGAGCCCTCGGGGTTTTGGTTCCACGCGGCAAAAGATAGAACAACGCCCGTGGTGTATGATTGATCCTACATGACTGTGAATCTTGATAGTGAACCAAGTTTGATCATAGTTTCCATTTATGGATTATACCGAGTATGTTATTGTTATAAGATTAGATAGATCGTACATTGTAAGTTTGAATCTTGATAGTGAACCAACCACACACCAGTGCTGGTGAATCCTCTTCCTAAATCCTAACTATTTATAAACATATACAACACCATACTAGTGTATCTCGTTAGTGGCATACGGAGAGGATGGTGTTTATCCGTCTTCCCTTTACTATAGAAAGATATAAAGAAGTTGTTTCTGATAGATACGAGTAAAATGTTGAAATTAAATGTCCCTTCCCACATCGTTTTAGTGAACAATTTTAATGCTCTTAATATGTAACTCTCAGGCACAAACAGAGCAATCCGATCACATGTTGACGTGAATGGGCTATAACCCGTCCTATTGGATGGGCCAGGCCCAGGAAAGTCCCCGGGCCCATAACCGCAGAGATGCGGGCTCAGAAATGAGTTATGCTTCATGGGCTGGAATCCAAAACTCATAAATGGGTTTGGGCTGAGACGAGGTGGAGCCTATGATTCCGGCCCAGAAGCCCAATTGGCTAATAAAACAGTTATTCACGTGGTCTAGTTAAAAACCTAGATTAACTGAACGGGGCTTACAGTCATGTGGTCATTCTTTTTGTTTTTTTATTTAGCATTTGAATTTATTGACAATTATTTCGACAGACTAGAGAGATTTTAAACATCGAATAGGGGCCATTTACTTCATTATTTTGTTTTATGATTTTGTAGATACAACATGTAAAGTTTAGTGATAATATATGTATCTCATAAAATTGATCTTTCACTTTTTCCGGAGAAGAAGCAATGATGGTATCTGGGAAATAAGCATCGGCTAACTCTGTGCTAGCACTCGCGGTAAAAAGAAAAAGCAAGTCTGTGCATACCATACTCTCTCTGTTCTTCTCCTAATGGGCCAACTCGAAATGGATCAATTCGAGAAAAGGGTTGCACAAGGACACTTATCACGAGAAGCAGAGTTTGATAGTGAAATTCAAGATTAAGAGTACTGCAAAACATCAACTTTGGTTGATTATGAAATTCAATGTCAAAGAGATGACTTCTGTTGAACTCTTCCTTTACATGAAGGGAATGAATGTCTTAATGAAATGAAATTCGGGATCCAAGTAGATTAGGGGTTGCTGAGTATTAAAAACTTATTACTCGGAATCCTATTTTTTTAGAACGAGTTTGAAGGCGTAGGCATTGTAGAAATCTTCCAACTGCCCCTTCTTTGTCATTGAGTTTTTTTTTAGGAGATTGACAAGTTAATATATATATATATATATTGATTTTTTTAATAAATCCACAGAAAAAACAACGAAATTCATTTATACCCACGAACACCCACTTAGTTCTTTATCCTGGGACCTCTTTATCCTGGGACC</genome_strand>
        <mrna_strand>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG...................................................................................................................................................................................................................................................................................................................................................................CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG..............................................................................GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG.............................................................................................................................ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG...................................................................................GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTT....................................................................................................A-AAAAAAAAAAAAAAAAAAAACCC-CGGGTTTTTTTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTC................................................................................................................................................................................................................................AAAAAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTTTA--AAAAGGGGGGGGAAATATAT-TTTTTAAAAACCCCCTTTTTT-TTTTGCCCAAAAAAACCCCCCCCCCACT-ATTTTTACCC-CCCCCACCCCCCCA-CCGAAAATACTCCGGTGGTATTACCCCGGGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567027" ref_strand="+" ref_description="SGN-U567027 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157349974|emb|CAO39873.1| (e_value=1e-171) unnamed; (*ATH) AT5G06600.1 (e_value=1e-162) | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 12 GI:11993471 (Arabidopsis thaliana), one amino acid difference | chr5:2019108-2027944 REVERSE | Aliases: F15M7.13, F15M7_13; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=1e-161) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12; ">
      <seq>gattgactggatttgctcctgaccaaaaaaattaaactttttgaggaaataaagtttgaaaccttctgtcatgtgtgcgggagggggcccaaaggcttcttttccatttaggcggattgaaaataggggatatgatatgctttcaaaaaaaaacttctcctgaagttgaagaacaagtccgatttccagatgttccttcatatatggagtatgtcaaaaatcgccagcttgtccacttcagagcactggaaaaaccgaaggaggatgatttttgtctggagttagcaaaaagtgatacatatgatgaagtagtggatagagtggctcagaggcttggtgtggatgattcctccaaaattaggcttactcctcacaactgctactcacagcaacccaagcccaaccccatcaaatatcggtctgtggatcatttggtagacatgcttatccattacaatcagatctccgatattctgtattatgaagttctggacatacctctgccagaattacaatgtctgaagacgctcaaagttgccttccatcattctacgaaggatgagattgaaattctgaatgtaagattgcctaagcagagtacagtgggggatgtacttgaggaaatcaaatcaaaggtagagttgtcccatccaaatgcagagctcagattactcgaggtcttctatcacaagatttataagatctttccgctcagtgaaaagattgagaatataaatgaccaatattggacattgcgggcagaggaaataccagaagaggagaaaaaccttggtccccacgatcgtctaattcatgtttaccatttcacaaaagagactccacaaaatcaaatgcaagtgcagaattttggagaacctttctttctggtcatccatgaaggtgaaactttagcggaaattaaagtgcggattcaaaagaaattgcaggtctcggatgaggagttctctaagtggaaatttgcatttttatcattggggcgcccagaataccttcaggactcagatattgtatccaaccgttttcagaggagagatgtttatggtgcttgggagcagtaccttggattggagcatgcagataatacatctaagaggccatatattaatcagaaccgtcacacattcgaaaagccagtcaagatatacaactgaaagaggcttgtgatatttcagctgggttttggttgtagcgttcactcctcacgagcttagaagggagaaatgtaaaagagtttgtagctatgacatgatgataagtagaaggcagagaggggattggcatgaaaaccgttttcatttaggggatttcaccacctttgtctcctcctgatgatttggtcagattttgcaggctttatgttttcccttcgatttcgtttggggagggagatttgtttctctttagtttagttaggatgtgcgctgcagtttctgccctcgccttcagctattacaccgctgagggttggttcttttgatgttgtcttctgcatagtttattctgcatataagattttggttgaagggaatgtatagctgatatagtcgtcgggtgccttctgggcatgtaccatctatctgttacttctgtatgaatttccccattcctctttttgttgtatttaatgtcataggagtggggaatggatctgtataagttttctctatagcattggtatatgttttctatgcttcattttctgtctttgttgttgttactgttggtttagtttggcaggaaatgacaaaaacctccttcaattgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="29151" stop="21584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28852" g_stop="28809" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28808" i_stop="28710" i_length="99">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="1.000" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28709" g_stop="28641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="115" r_length="70" r_score="0.783"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28640" i_stop="28552" i_length="89">
            <donor d_prob="0.952" d_score="0.74"/>
            <acceptor a_prob="0.864" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28551" g_stop="28441" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="227" r_length="112" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28440" i_stop="26067" i_length="2374">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="26066" g_stop="26011" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="283" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="26010" i_stop="25919" i_length="92">
            <donor d_prob="0.069" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25918" g_stop="25741" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="461" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="25740" i_stop="25618" i_length="123">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="25617" g_stop="25516" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="563" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="25515" i_stop="25434" i_length="82">
            <donor d_prob="0.318" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="25433" g_stop="25362" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="635" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="25361" i_stop="24486" i_length="876">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="24485" g_stop="24420" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="701" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="24161" g_stop="24096" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="767" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="23779" g_stop="23693" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="854" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84">
            <donor d_prob="0.788" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="23608" g_stop="23492" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="971" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126">
            <donor d_prob="0.757" d_score="1.00"/>
            <acceptor a_prob="0.311" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="23365" g_stop="23291" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1046" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="23290" i_stop="23162" i_length="129">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="23161" g_stop="23078" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1130" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="23077" i_stop="22540" i_length="538">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="22539" g_stop="21884" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1131" r_stop="1787" r_length="657" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U567027" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1783</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28852" e_stop="28809"/>
          <exon e_start="28709" e_stop="28641"/>
          <exon e_start="28551" e_stop="28441"/>
          <exon e_start="26066" e_stop="26011"/>
          <exon e_start="25918" e_stop="25741"/>
          <exon e_start="25617" e_stop="25516"/>
          <exon e_start="25433" e_stop="25362"/>
          <exon e_start="24485" e_stop="24420"/>
          <exon e_start="24161" e_stop="24096"/>
          <exon e_start="23779" e_stop="23693"/>
          <exon e_start="23608" e_stop="23492"/>
          <exon e_start="23365" e_stop="23291"/>
          <exon e_start="23161" e_stop="23078"/>
          <exon e_start="22539" e_stop="21884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGCTGGATTTGCTCCTGACC-AAGAAATTGAACTTTTTGAGGTGTGCTTTTGTCTCCTTCTCTCTGTTGTTGATGCACTTATCGTTCTATTGATGTCATTGATTGATATAACATGAGAATTTGGTCTTTTTTCTTTACAGGAAATAAAGTTTG-AACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAGGTTTTTGTCCTTTCTGTTTTCCCTGCTCGATTGCTGAAAGCTTTTCTCTTCTCAGATTTGGATTTGCTTTGCTGACTTAGTTCTTACAGATTGAAGAT-GGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAGGTGAATCTCCATGAGTTCCAGTTTCTGTAAGGCTGTTGATGCCCCTATATGTAGTATAAATATTTTCTACTCTATTTTTTTTTGAGAAGGTTAACTGGTATTATAAACAAAAGGAGTACATGAATTGTGTGCTCCTACAAATTACATCAAAAGTATGAAGGTTTAACCCAAAACAAAATCTATCACCTATATCCCTTATAAACTGTCGAAAAATAAGGTAATGTCCCCTATATCCTTAGGTACAGAGTGGAGACACCATTCTGCTCCTCTATTTTTCGGGTTTATGGTCCTCTAGTTTTGGTACCGTGCGTTGCACGTTTGGCCCTACTACTATTTAAAATTTATGTAGACCTAACTCTTGTTGATAATAAGGTAGTACCTTTATTTTACTGTGTCCTTCGTCCCTTGAATCTTTGTAACTCAAAACATCTGTCAAGAATAAACTATTAAATAGCTTTAGAAAAACTCCATTTATAAGTGGAAAGTGTCATTACACGGAACGGATAACTTGTTACATGATTATCATTGAATTCGAATCATACATTGACTTGGAGGGAGTATAGTATTTATAGCCAACAAAAACTAAATTTAAAATTGACATACAAATCTAAAAAACTCACTCTTGCAACTTCAAGTATCATCAAATTTTAGTATGTATTTAAAGGGTAAATATGTATTTATTATAAGTGATCTTTACGTTTTTCTATGTGAAATTTTATGGAGCTATCTAAGCATCAACAAACCTTTAGTCGATCCAATTTTGTCTATCTAGCATTCTAACTACGTTATTGTGTTTTAAAGAGCTAATTACTATTTTGTAATTACTCAAAAGCATTATAATCTTTCAATGATTTAATATAAGTTAAAAAGAGTAAAATGGACGTTCAACTTTTGATTGACATTTTGGTAATTCAATTTTTTTAGCATTAAATGTTCTTACTATGAATATTACAAATATGATTAGAAAAACAAGTGGTTTTCCTTCTGGGTCGAGCTAGTCACACCGGGCTTGCCTAGTGCGGGTTACCTCTCATGTATGGTTTGCCAGCTATTCCATAGGAGCGGGGTTTTTACTCGGGTGGCGGTTGTGTGTTTCCTTAGCATAAAAAAAAGAATAGTATAGATATGAAAATATAGACTTAAACAAAGAGGATGTTGTCTAAAGTAAGAGCATTTATAGAGGTTGTACCATTTTTATTGCTAAAAAAATCATTTTTTTTTCAATTTTCAAATGTGGAAGATTTTTAAAGAAATTACTCTAAAATCTTCAAACAACATGCTAAATTAGCTACTTTATTGGACAATACAATAAATATCTGTATCCAACATTACATGTTCTATTAATTTATAATTTATTAGAATACATAACCTTAGAAAGTTATAAAAGTGAATTTGTACAAATTGAAATAAAGAATGAAAGCTAAAGAGAACATTTTAATAGAAGTCAATTAATGTAAAAAACAATAAAATACACAATGAGTTGCACCGGGCTTGCCTAGTGTGGGTCCTCACCTGTGTGGTTTGCGAGCTATTGCATAGAGTGAGGTTTTTACTCTATGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCTTTGTCATAATAAAAGTCACAACCCTTTGAAAAAGTCACCGTCCGTTGAAAAAGGCTAACTCTATGTAAAAATCACAACCCTTCTAATAAGTCATCGTTCATGTAAAACATAAATAAAAATATAGAACATAGAAGATTTACTAAATTGGATTACTAGCCATTTATGGTTTATAGAAAGTTTACTATCTATAGGTTTCAAGATAGATAGTATTAAATTTACGACTACAAATGACGCTCAAGTTTTATGAAAGTATAGAAATAGTTAAAAAATCAGAGAAAACCACTGTATTTATAGCCAACAAGGGGTGGTATGGTCAGGTGAGTATTGGGGCTTTTCGTAAAAGTCACAATCCTTCGGCAAAGTCACAACCCCTTTTGTAAAGATATGACACCCCGGCCTAACTCAACCCCAAAAGCTAGTTATGAGGGGAAGTTTGTCCATGTTCATATAATGAGATGAATTTCCTATCCCTCTACCGATGTGGAACTTCTTAACACCTTTAATGTGGAAAGTTGCCTCCTTTAGAAGATATACTAAAATGAGTGTTTTTAATTGGGAGTATTATAGTTATTTAACATTCAAGTTAGGAAGTTCATGTTTTAAAGGTTGTATAGATAGATTGGTAGATATAGATATTAGATAGATAGATAGATGATGATATGATGTATGATATGATATATTATGATGATATGACAATGATATGATATATGATGTATGATATGATATATGATGATATGATCTTCTCCCATTTTTCATTTCTCATATCTGAGTTTATTATTTCCAGCTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTTGTGAGTTTATTTGGTACCTCTATCCTACACTTCAGTGCAGAGCAAATGCTTCTGATACATCTGTGACCATCTTTTTGTTGTTAATACTACAGAGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAGGTTTGTTAACATGAGTTGACTTCATCTTGGAAGCACATGGTGACTTTTAATGCTTGCTCATCATAACAATGGCATATTACAACCATGTCTCAACTTTTTTCTTTATTTTTTTGGTGGTGATAGATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAGGTTTCTCTAAATTTGGCAAAAAACATTTTTATCCCATCAAACTATTACCCTTCCTCATTACATTTGTTTTCATTGCTTTCAGATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAGGTATGGATACATGTTTATAAACTATAATTGTGGTACTGAGTCTCTGAAAAGGATGCAAGCAATTTCCACACCTTTCAGTAAAAAATAAGCAGTTTACTCGTGGTAGATTTCTGATCTCTTGATAGTTATATGTTTTTAGTTGATTTATGCACCATTACTGTTAATGTTGTTTGATGGATTCAGGTTCTGTGGATAGCATATAGGGAAAGGGTACAATCTAGTGTAACTTGTATTATTTACCCTAATAATTGAAGAGTTGGTATTTACATTTGCTGCCTACACTACGCCAGCGTGTGCTTTTCTGCTACTTTGGATAATATTTTTTTTTTAATATTGACTAGTTATAACTAAGATTCCGTTTCCAGTATCTTAGTCAATTACTATGCATATAAGATCTCTGTGATGATTGTCCTAAATAAGACTTCTCAAGTGTCACATTGAGGCGTCTTTTGAAAATATAATTTAGAGATTTGGAAATGACATGAGAAGTACAAGTTAGCCAAACATGCTTGATTTAGTTGATTATACAAAAATCACTTGTTGACATTAGGAGTTGGCAATCTTTTCGTGATATTTTTTGACTTTGATAATGGCAATCTTCCTTCCTTTTTTGAGCAAGGGGAGTACTCTCTTTCCTATGAGATTATCTTGTATAAAACCATTAATAAAGGATGACAAATGTGCACCCTAATGTACGTCTCTTGTTGGTGTATATATTATGAAGAAACCATTTTACATGCATTTTTCAAGGACATGTAAGATTTAGACTGTCATGTACATTCTGGACCAATGTTATGTCTCTAATGTTTTCTGTTCAATGGTGGCTTCCATTTATGTATGAGAATATAACTTCTGGCATATGGTGTGCTGCAATAGGTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAGGTGAGGAGTCCTAATATAAGTTTACTACTTTGTCCTTTACTTGAATCTATAAATATGGCTTCTAGCACAGGCTTTGTGCTCTTGACTAATACAATAGTTACCTTTCTCTAAAAATACTTTTCTTCTTTATTAGATTTGTGCTGACATTTTAGTTTGATTGCTAGATGACCTTTCAAGACTTCTTCTGTTAGCTTAGGTGTTCTTTTTGTCTGTCTGTATCTGATCCACCACCCTTTCATTACCATTTCTAATCTGCAGATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAAGTAAGTTTTCTAGGTGTTATATGGCTGATTTCTTCTTCTTCTTCTTCTTCTTTACTTTTCTAAAAATATGTTGCTGAGGTTTTGAAGTTTAAGCAGAGATTTGGATACATATCCCCTTCCTTCCCCACCCTCTTTTAAAAAGGAGAATCTAGGGTCTGAGCTTTAATTTGATTGCTATGCTTTATAGGTGTCTTCTGTTCCACTGACCCCTCTGCTTTAGATTGTTGATTAAAAATTAATAATGATATTCTGTGGTATATGTTGTTCCACCGACCTATTTGTAATACTCTGTCTGTTTTATTTTAATTTTTTGTAGATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATGGTAATACAAATAGTCTTGATTAATTGTTACTGATGTACTGCTGCATCTGACTTCAAAATTAGTAATTGGATTGGTCTTCAACAGCAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAGGTACAGTGCTTTAGCACAAGCCTAAGCAGCAACTGGAATATTCTTGCATACTTTTAGCATTGTGGTTTATTTTTTAAAGGCCTATGATTGACGGACGGGTTGACTCTGTAATTTTTTGATGGCTAGTGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAGGTTAGTGTATCCCCGCCTCCCCCCCTGAAGGTCCACGTGAAACTCCTTTTATGTTTGTATGTCAGCTATAGCTGCGCCTTCTTTTTTCTAAATTCTGCCCAAGCTGAAGATGCTTGTATCCTGTTGCAGAGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAGGTAGACTCTTAGATCTTACTAGAACCCTTTTAGTTATTAGTTAAAACATACCAGTGGTTCTATTGTAGTATCTTAATTTGCCTCCTCCTAAAAGCTGTTAATTTATGATATTTTATCTAGTGGAACCTGCTTTTTAATGTTTGAGGAGCTTTCAGGGGTCAAGTTAAGATTTACTTTGTCTTAACTATAGTTCCAGTGACTAGACTATGAACTAGATCTTACTATGTCACAAGGCATTCGGTTAGTAGATTGTTAATTAAAAATAAAAAATAATTTCTCTAATAGTTGCGCATATGGTTTAATTTCTATGGACCTTCTCTTTTGGGTGTGTGTGATCAGATATTGAGATGTAATCTATGTTTCCATTTCGCTCGACGACAATCACTGACTAGTCACATATTTTGATAGTTGCAGAATTATTTAACATCGTTTCTCCGCTGGACCCCCTACACTTTGAGCTGCTTATTACTTGATAATCTTGGTCATTATATGTTGAAAAAACCTCTACTGTGCTTTAATAATTACTCTGATATTGCAGAACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCA-TTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGC</genome_strand>
        <mrna_strand>GATTGACTGGATTTGCTCCTGACCAAAAAAATTAAACTTTTTGAG...................................................................................................GAAATAAAGTTTGAAACCTTCTGTCATGTGTGCGGGAGGGGGCCCAAAGGCTTCTTTTCCATTTAGGCGG.........................................................................................ATTGAAAATAGGGGATATGATATGCTTTCAAAAAAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTT............................................................................................AGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAG...........................................................................................................................ATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAG..................................................................................ATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAG..................................................................................................................................................................................................................................................................ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA............................................................................................................................................................................................................................................................................................................................ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG....................................................................................CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG..............................................................................................................................TGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAG.................................................................................................................................AGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCATTTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567023" ref_strand="+" ref_description="SGN-U567023 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157349974|emb|CAO39873.1| (e_value=2e-85) unnamed; (*ATH) AT3G11910.1 (e_value=4e-79)  Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 12 (UBP12) (Arabidopsis thaliana) GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain | chr3:... ; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=4e-78) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13; ">
      <seq>cggcccaatcgcccattaactccgcaggaggaactacaaacagtttgtcagttgagggaagtttctaacaagaacaacaatgctgagttaaaattatttttggaagtggactgtggcctggatttcattcctgttcctccacctgacaaaagcaaggatgatatactccttttctttaagctttatgatcctgagaaagaagagctccgttatgttggtaggcttttcgtgaagagtactagtaagccagttgagatacttccaaaacttaatgaattggctggatttgctcctgaccaagaaattgaactttttgaggaaataaagtttgaaccttctgtcatgtgtgaaagactagacagaaaggcttcatttcgatttagccagattgaagatggggatattatatgctttcagaagaaaacttctcctgaagttgaagaacaagtccgatttccagatgttccttcatatatggagtatgtcaaaaatcgccagcttgtccacttcagagcactggaaaaaccgaaggaggatgatttctgtctggagttagcaaaaagtgatacatatgatgaagtagtggatagagtggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="32524" stop="25575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32224" g_stop="32183" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32182" i_stop="29276" i_length="2907">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29275" g_stop="29198" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="120" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29197" i_stop="29096" i_length="102">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29095" g_stop="29007" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="209" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29006" i_stop="28918" i_length="89">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28917" g_stop="28809" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="318" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="28808" i_stop="28710" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28709" g_stop="28641" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="387" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28640" i_stop="28552" i_length="89">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.864" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28551" g_stop="28441" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="498" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="28440" i_stop="26067" i_length="2374">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26066" g_stop="26011" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="554" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26010" i_stop="25919" i_length="92">
            <donor d_prob="0.069" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="25918" g_stop="25875" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="598" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U567023" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32224" e_stop="32183"/>
          <exon e_start="29275" e_stop="29198"/>
          <exon e_start="29095" e_stop="29007"/>
          <exon e_start="28917" e_stop="28809"/>
          <exon e_start="28709" e_stop="28641"/>
          <exon e_start="28551" e_stop="28441"/>
          <exon e_start="26066" e_stop="26011"/>
          <exon e_start="25918" e_stop="25875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCCCAATCGCCCATTAACTCCGCATGAGGAACTACAAACAGTGAGTTCTTATATCTTTCTCATTCTCATTCTGTGTCTTTAGTATTTGTTATGATGGTATTTCCCTGTTTTGGCTAATTATACTTGTCAAAGTTTCATCGCCTGTTTGCTTTAATATTGACTGCTTAATTTCTGAGTAAGTTGGATTCATTCTTTGCTGTTGAAGGTGGGTTTTCCTTTTCCAATATCAGTGTGCACCATAAGGAGGTGGTAATATGACAAGGTCTTGTGTTATGTTCTTTGGAAATGATTGGTACTTATAATTAATCAGAGGATGCTCTAATATCGCTTCTTAGGTGGTGTAACGTTTATCATGATTTTGAACTTTCAAACTTCTCGGAAACTTGTTCTATTGAAAATTGCTTGCTGGTATCATCTTCCAGACTTTTCTGATGTCTTTACCAACTTTCCATATGCTCCAGCTTCCTACTGCTTCCTTTGATTACTTGACATGACACTGAGTCCAAAATTAGTGTAAAACATAATCCAAATATCATTTGCAGCTGTACAAATGCAAATAGAAGATGGCTGATTGTCTCTTCAGTTTGATAGCTCATATAGCATCTGTTTGCCATCCGGAATTTCCTTCACTTGAGATTGTCCTGTGTCAAAGATGCCCTCTGGAGGGCTATCCAACTCCTAATCATTCCCTTAAAACCAAATGTCTTTTACTTTTGTTAGTTGGTTACACCTTTTCTCTATTAATTCTTCATTCCAGTTCTCAGATTTTGTTAGCTCCTTGAGAATAGCCTAGCTGTTTGTATGGGGGCCATTTGCACCTTTTGTAATCGGTTATAAGCAAAGATTTAACACTGGCCGTCATATCTCTTTCATCATAAGAAAAACATGAGTGCTTCTCAGTGAGAACTTGACTACCATTCTCATTATATTTAGAAGTTATCACAGAAAGAAAAATTTTCAGTCCAATATAGGGAAATCAAAATGGTGGAGGATTCACAGGGCAACTTTTTTTTTACACTGGTGGTACCCGGCCAACACATTGACTATTCCATCAGTGTGCTACCACTCACCAGCACAAGTTGCCGTGTAACTTTGCCAACCAAATTTTAGGCAGATGTCACCTAGCCTTTTGCCTTTGGATTTGAACTATTGTCTCCAAGGTTGACCACTAGGCCATATTCTTGGGTGCTTTGGCAACATGGTTTTTGATTCAGTCTTTCCAAAATTTCCTAGCGAACCTTCTAAAATGTTTTCCCAAGTCTACCCATCCAACTTAACAATGAAAAAGTTCTGCTCACCCAAGTTAAAGTTATTCTTAGTTTAGGTTATACAATTACATTTCATCTGTGGTGTAACTCTCTGTTGTCCTGTCAAATTAATTAATAAATCTTGGTGATATAATTGTTGGTTTCTCAAAATGTTTGCACTTGTTAATGTATAATCATTTTTACAAAGTTTTGATTGCCAGTAAACGGTTAATCCTTGTCCTATTGATTTGATTGCCTTCCTGCAAAACCAAATCAAATATATGATGATGGACTGTCTTAATAGGCAACATTAGATTACTTCGAATTCTGTTTTTAGGTGGAAAAGCTTTTCCAATTTGTGTTTGGCCTTTCAGATATTTATACGTCAGTAGAAAATATAAAGAACTTGTAGTACTTTTAATGCCTATTATTATTTCCGTTATTATTATTATTGGCCTAAAGATGAACTTAATGGAGTAACATGGTTACTGAGGAACTGAGGTTCATATAGCCCAACCCAACTTGCTTGGGACTGATGTGTAGTTGATGTTGTTGAGGTCTTCCCATTTGCCTAAGCGTTGATGGTCAAAAGTACTTGGTAGCTGTATTGTTGGGAGATGTAGGGGTCGGTTAGTTGATGTTGTTGAGGTCTTCCCATTTGCCTAAGCGTTGATGGTCAAAAGTACTTGGTAGCTGTATTGTTGGGAGATGTAGGGGTTGGTTAGTTGATGTTGTTGAGGTCTTCCCATTTGCCTAAGCGTTGATGGTCAAAAGTACTTGGTAGCTGTATTGTTGGGAGATGTAGGGGTCGGTTAAATAGTCAAGGTGCATTCTAGGTGTGCCAAAGTCCAAACACCACCAATAAAAACCTTTGCACACAGGAGGCAAAAATACATTTTTGTTTTGTCTAATGATTTATGTTCTGAAGGGGTTTAGAAGTAATCAATCACTTCCCCCGTCTCAAATTGATCAATTTTTGGTTTGGCATCAGAAGAATGATTAATATATCCCGTGAAAATAAATATTATGGATTTAGAGATTGCATTTTTTTTAATGAACATCAATCAGTAGAATGTTGGAATCAAGTGGGTATAAATGGAGTAAAATGGCTGCAGATGCTTCTTATAAGTAGGCCAAACCAGTTACGATTGACAGTAGTATTCGTAAGTATTGACTATATTCTTTATGTAGATGTACTTATCTAATAGATTGACTGCATAGGAATCTGATCGTGCACTGTGTTTTACAATTAAAGTGATGGCTCATTCATATTTTGGTCATCTTGTATACTTGTTCCAGTACGTGAATGATATTTTCAGTTCTGGTCCTTTAAAGATTCAAGTTTATCCTGGTATATCACATTTTTGATTTCTTTAATGTTTTAATCTGATGATTTCTGGAAGTTATTTCTGTACTTCGCATGATGTTCTAGTTCGTACATTCTCTTCCTATGTTGCGCTGTCTCTCCAAATTTTGGCCCACCCGTGTCGGATCCTCCAAAATTGCACTACTTTTGGAGGATCCGACAAGCAACCAACTGCATTTTTGGAGAGTCAGAGCAATATAGTTTTCTTCTGCCGTCCTATGAAAACACTTTTGCTTTATTTACTCCTATTATTCTTTATGATAATTATTTCCTAGCTTGTAACGTTTCTTGAAAGATGTACATTGTTGCCTTAGACATCCATCTGCAAGTGCAGGTTTGTCAGTTAAGGGAAGTTTCTAACAAGAACAACAACGCTGAGTTAAAATTATTTTTGGAAGTGGACTATGGCCTGGTACCTTCCTCAACTCTCTTATTGATTGCCATGGATTACTCCCCTTTGTTGACATTTGTTTTTTGATTCTTTACTTTACCTTTAACTTGTTTAATATATCAGGATTTCATTCCTGGTCCTCCACCTGACAAAAGCAAGGATGATATACTCCTTTTCTTTAAGCTTTATGATCCTGAGAAAGAAGAGCTCCGGTAAGTTGTTTGCTCTTAAAAGAGCTCACATGGGAGATATATTTTTGTGGCAAGATAACATCAAGATTTTTTCCTTTGTGTATTTCTAGTTATGTTGGTAGGCTTTTCGTGAAGAGTACTAGTAAGCCAGTTGAGATACTTCCAAAACTTAATGAATTGGCTGGATTTGCTCCTGACCAAGAAATTGAACTTTTTGAGGTGTGCTTTTGTCTCCTTCTCTCTGTTGTTGATGCACTTATCGTTCTATTGATGTCATTGATTGATATAACATGAGAATTTGGTCTTTTTTCTTTACAGGAAATAAAGTTTGAACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAGGTTTTTGTCCTTTCTGTTTTCCCTGCTCGATTGCTGAAAGCTTTTCTCTTCTCAGATTTGGATTTGCTTTGCTGACTTAGTTCTTACAGATTGAAGATGGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAGGTGAATCTCCATGAGTTCCAGTTTCTGTAAGGCTGTTGATGCCCCTATATGTAGTATAAATATTTTCTACTCTATTTTTTTTTGAGAAGGTTAACTGGTATTATAAACAAAAGGAGTACATGAATTGTGTGCTCCTACAAATTACATCAAAAGTATGAAGGTTTAACCCAAAACAAAATCTATCACCTATATCCCTTATAAACTGTCGAAAAATAAGGTAATGTCCCCTATATCCTTAGGTACAGAGTGGAGACACCATTCTGCTCCTCTATTTTTCGGGTTTATGGTCCTCTAGTTTTGGTACCGTGCGTTGCACGTTTGGCCCTACTACTATTTAAAATTTATGTAGACCTAACTCTTGTTGATAATAAGGTAGTACCTTTATTTTACTGTGTCCTTCGTCCCTTGAATCTTTGTAACTCAAAACATCTGTCAAGAATAAACTATTAAATAGCTTTAGAAAAACTCCATTTATAAGTGGAAAGTGTCATTACACGGAACGGATAACTTGTTACATGATTATCATTGAATTCGAATCATACATTGACTTGGAGGGAGTATAGTATTTATAGCCAACAAAAACTAAATTTAAAATTGACATACAAATCTAAAAAACTCACTCTTGCAACTTCAAGTATCATCAAATTTTAGTATGTATTTAAAGGGTAAATATGTATTTATTATAAGTGATCTTTACGTTTTTCTATGTGAAATTTTATGGAGCTATCTAAGCATCAACAAACCTTTAGTCGATCCAATTTTGTCTATCTAGCATTCTAACTACGTTATTGTGTTTTAAAGAGCTAATTACTATTTTGTAATTACTCAAAAGCATTATAATCTTTCAATGATTTAATATAAGTTAAAAAGAGTAAAATGGACGTTCAACTTTTGATTGACATTTTGGTAATTCAATTTTTTTAGCATTAAATGTTCTTACTATGAATATTACAAATATGATTAGAAAAACAAGTGGTTTTCCTTCTGGGTCGAGCTAGTCACACCGGGCTTGCCTAGTGCGGGTTACCTCTCATGTATGGTTTGCCAGCTATTCCATAGGAGCGGGGTTTTTACTCGGGTGGCGGTTGTGTGTTTCCTTAGCATAAAAAAAAGAATAGTATAGATATGAAAATATAGACTTAAACAAAGAGGATGTTGTCTAAAGTAAGAGCATTTATAGAGGTTGTACCATTTTTATTGCTAAAAAAATCATTTTTTTTTCAATTTTCAAATGTGGAAGATTTTTAAAGAAATTACTCTAAAATCTTCAAACAACATGCTAAATTAGCTACTTTATTGGACAATACAATAAATATCTGTATCCAACATTACATGTTCTATTAATTTATAATTTATTAGAATACATAACCTTAGAAAGTTATAAAAGTGAATTTGTACAAATTGAAATAAAGAATGAAAGCTAAAGAGAACATTTTAATAGAAGTCAATTAATGTAAAAAACAATAAAATACACAATGAGTTGCACCGGGCTTGCCTAGTGTGGGTCCTCACCTGTGTGGTTTGCGAGCTATTGCATAGAGTGAGGTTTTTACTCTATGCGCACCCAAAGGGTAGCGGCTGCGGGTTCCTTTGTCATAATAAAAGTCACAACCCTTTGAAAAAGTCACCGTCCGTTGAAAAAGGCTAACTCTATGTAAAAATCACAACCCTTCTAATAAGTCATCGTTCATGTAAAACATAAATAAAAATATAGAACATAGAAGATTTACTAAATTGGATTACTAGCCATTTATGGTTTATAGAAAGTTTACTATCTATAGGTTTCAAGATAGATAGTATTAAATTTACGACTACAAATGACGCTCAAGTTTTATGAAAGTATAGAAATAGTTAAAAAATCAGAGAAAACCACTGTATTTATAGCCAACAAGGGGTGGTATGGTCAGGTGAGTATTGGGGCTTTTCGTAAAAGTCACAATCCTTCGGCAAAGTCACAACCCCTTTTGTAAAGATATGACACCCCGGCCTAACTCAACCCCAAAAGCTAGTTATGAGGGGAAGTTTGTCCATGTTCATATAATGAGATGAATTTCCTATCCCTCTACCGATGTGGAACTTCTTAACACCTTTAATGTGGAAAGTTGCCTCCTTTAGAAGATATACTAAAATGAGTGTTTTTAATTGGGAGTATTATAGTTATTTAACATTCAAGTTAGGAAGTTCATGTTTTAAAGGTTGTATAGATAGATTGGTAGATATAGATATTAGATAGATAGATAGATGATGATATGATGTATGATATGATATATTATGATGATATGACAATGATATGATATATGATGTATGATATGATATATGATGATATGATCTTCTCCCATTTTTCATTTCTCATATCTGAGTTTATTATTTCCAGCTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTTGTGAGTTTATTTGGTACCTCTATCCTACACTTCAGTGCAGAGCAAATGCTTCTGATACATCTGTGACCATCTTTTTGTTGTTAATACTACAGAGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTC</genome_strand>
        <mrna_strand>CGGCCCAATCGCCCATTAACTCCGCAGGAGGAACTACAAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTCAGTTGAGGGAAGTTTCTAACAAGAACAACAATGCTGAGTTAAAATTATTTTTGGAAGTGGACTGTGGCCTG......................................................................................................GATTTCATTCCTGTTCCTCCACCTGACAAAAGCAAGGATGATATACTCCTTTTCTTTAAGCTTTATGATCCTGAGAAAGAAGAGCTCCG.........................................................................................TTATGTTGGTAGGCTTTTCGTGAAGAGTACTAGTAAGCCAGTTGAGATACTTCCAAAACTTAATGAATTGGCTGGATTTGCTCCTGACCAAGAAATTGAACTTTTTGAG...................................................................................................GAAATAAAGTTTGAACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAG.........................................................................................ATTGAAGATGGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTCTGTCTGGAGTT............................................................................................AGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598296" ref_strand="+" ref_description="SGN-U598296 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|186520708|ref|NP_001119179.1| (e_value=3e-68) UBP12; (*ATH) AT5G06600.1 (e_value=3e-70) | Symbol: None | ubiquitin-specific protease 12 (UBP12), almost identical to ubiquitin-specific protease 12 GI:11993471 (Arabidopsis thaliana), one amino acid difference | chr5:2019108-2027944 REVERSE | Aliases: F15M7.13, F15M7_13; (*SWP) sp|Q9FPT1|UBP12_ARATH (e_value=3e-69) Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12; ">
      <seq>ttgtctcctgatgcagataggagtgtacggaatctctatacacttcatagtgtgttggttcatagcggcggtgtgcatggtggacattattatgctttcatcaggccaacactgtcagatcaatggtataagtttgatgatgaacgggtgacaaaagaagacaataagagggctctagaggaacaatatggtggagaagaggagttgccacagacaaatcccggtttcaataacactcccttcaagtttactaaatactccaatgcttacatgcttgtttatatacgtgagagtgacaaggataaaataatctgtgatgttggtgagaaggacattgcggaacacttaaggataaggttgaagaaagaacaagaagaaaaggaggacaagagacgatacacagcacaggcccacctgtatacaatcatcaaggttgcacgggatgaggatcttagagaacagattggtaaggagatatattttgatcttggtgatcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="39042" stop="36142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38742" g_stop="38693" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38692" i_stop="37286" i_length="1407">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37285" g_stop="37211" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="125" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37210" i_stop="37035" i_length="176">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37034" g_stop="36956" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="204" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="36955" i_stop="36893" i_length="63">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36892" g_stop="36746" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="351" r_length="147" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36745" i_stop="36664" i_length="82">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36663" g_stop="36583" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="432" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36582" i_stop="36510" i_length="73">
            <donor d_prob="0.961" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="36509" g_stop="36442" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="500" r_length="68" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U598296" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38742" e_stop="38693"/>
          <exon e_start="37285" e_stop="37211"/>
          <exon e_start="37034" e_stop="36956"/>
          <exon e_start="36892" e_stop="36746"/>
          <exon e_start="36663" e_stop="36583"/>
          <exon e_start="36509" e_stop="36442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAGGTAAATTTAGCTCTCTTCTCGATGTGTATGTGCAGATAAACACACTGGCATGCAGTCCCAATTATTGTCTTTCTTTGAACTTCATTGTCTATTCAGCATAGTATGAAGTGTCTGTCTTTTTCGCTGATAAGCAAAGTTATTATATTCACATTAAATCAAAAGCTAAGTTGGTGCTATGTAAGCTTTTCAATTACATCTCTTAGACGCACAGGATGAGTCATTGCATCTTCCTGATTAGTCTGCATCCTTCAAAAATTTAAGCGAAAATAGAACATGTTTTGTGAAACATCTATGCTTCAAGCTATACACTGTTCTTACCTCCCTCTCTCTCTCTCTCTCCTCTTTTTTTTTTAAGTTATAAATATCTGAGAGATCTCCAAGGATCAGTGGTGTATGATTCGAAATTTGGTGCATAATGCGCCCACCCTCTTACCTTCTCCATTAGTACCTGACTTTTGTCTGCAGCAGGATTCAGACCAACGATTTGCGCCTAACCCACAAATAATGCGGTGGGCTCTTGGCTCTAGACAAAGCCTTTGGTGTGTGTGTGTGTCAAAATATCAACTATTTTTTTCTGTTTATATATGCCACATAATGCATAAGTGAGCAGTAAGCTGTATCCGCAACTTCTTCTTTGCGGATTATTCACTTCTCATGCTTGAAGCATTTATTACTTACCTAAATCAGATAATCCATTACTTGACATAAGCATGATTTAGAGAACTTCTCTATGAAGCTGCTGTGTTTTCCCCAACTCTGTATTCTGGCCCAAAATACCCATGTAACATGGAGCAAAGCTGACTTACAAATAATTCCCAGTCCTCGAGTATCAACTATGACTTTGCTATGGTTTCCCCATTATCTAGTTGTCTAGGACTACGGTGTGAAGTCTTCGGTGTAACTCAACTATGCTTAATTCACTTACATCTATTTTTGTGTCTGCTTCTTCTTCTAAACCACATGTACCACGAAGATCTGTTTGTAGTTGCTAAGATTCAATTTTTCTTTTTTGTTCTAAATCTTATTTACCCTCTCCTTTTTTTTTCCTTACAAAATTTTAGTTACTTGCTTTCATTAACCTAGGTTTTATCTATTTAATATTTTACTAGGAATGTCACCTTTCTGCGTTTTGTTGGTTAGCATGTGTAGAGCTCAGCAGTTCTGATTACAAATATGTTGGAAATATTGAAAACAATGAATCGATAAACTGTCATTGAATCTGATAAGTTTGGCCTTTGAGGGCTTTGTTTGTGTTTTGATATTTTGGGACATATGATTATGAGATTCCTTATAACGAAACTATTTCCTTTTGTGTTGTGATAGTTTCAAGCCATTGGCTTACCTAGGTGTGTGGCATTGTCTTTTATCTTTCTACTATGAGTATCAGCTTGCTTTTCTTAATGGCAGTGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATGGTATGCACTCTTTGTAAAACATTTTCTTCGTCACTGTCTCTACTGTACATTTCCTGCAGTATCACAGAGCAGTAGGGAAAATTCTGCATCATATCGTATTGTCATACAGTTAAAATTAATTAATTGATGATGTAAGTTGAGCTCTGATTGAATGTGATTATTTCGTTCCATATTAGGTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAGGTATACGCTCTAACAGCACATCTAATTTGTGTCATGCTTTGATTCTTACTTCTGCTTTTACAGTTGCCACAGACAAATCCCGGCTTCAATAACACTCCCTTCAAGTTTACTAAATATTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATCGCGGAACACTTAAGGGTATGATTGTCAAAAGTTTCCATGCAAGAAATAGATATTCTGTACCTGTCGTTCAGTTCACCATGTTTTTGTTCCATTTTAGATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACAAAGCACAGGCCCACCTGTATACAATCATCAAGGTCATTTTCAAATGGTTTAGTTGTCCAATATTAAGTTTCTCTCAACATGCTGTGTTAATCTATTCGTATGTAGGTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGTTGATCATGA</genome_strand>
        <mrna_strand>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATG................................................................................................................................................................................GTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAG...............................................................TTGCCACAGACAAATCCCGGTTTCAATAACACTCCCTTCAAGTTTACTAAATACTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATTGCGGAACACTTAAGG..................................................................................ATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACACAGCACAGGCCCACCTGTATACAATCATCAAG.........................................................................GTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGGTGATCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599449" ref_strand="+" ref_description="SGN-U599449 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349974|emb|CAO39873.1| (e_value=3e-80) unnamed; (*ATH) AT3G11910.1 (e_value=1e-75)  Symbol: None | ubiquitin-specific protease, putative, strong similarity to ubiquitin-specific protease 12 (UBP12) (Arabidopsis thaliana) GI:11993471; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF00917: MATH domain | chr3:... ; (*SWP) sp|Q84WU2|UBP13_ARATH (e_value=1e-74) Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13; ">
      <seq>gcacccccccatctgaactcatttcttcatataccccccacccccacccaccccaccctaccccctactcacctcgcccacatcgccggtgattagttgatcggacggtgactctttatcctcaaacatgaccatgctgaatcctcaaccgctggatcagcaggaagacgaggagatgcttgtgccacattctgaattagttgaaggtcctcagcctttagttgaagggcctcagccaatggaagtggcagcttctgagaatgctactactggggagaaccaagccgtggacgagcctcaggcttcccggtttacatggacaattgatgaattctctcggttatctgtgaagaagctatattctgagccttttgttgttggtagttataaatggagagtgcttatatttccaaaaggaaacaacgtggagtgtttgtcaatgtatttagatgtggcagattcagctacattgccatatgggtggaacagatatgcacagttcagcttaacagttgtaaatcagataaaccccaaatattcagtgaaaaaagagacgcagcaccagtttaaccaaagagagagtgattggggcttcacatcattcatgcttctaagtgatctttatgatcccaataagggatatcttgtaaatgataaagttgttattgaagctgatgttgctgtaaggaaggtcattgattactggacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="44925" stop="41573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44626" g_stop="44470" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44469" i_stop="43774" i_length="696">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.833" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43773" g_stop="43686" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="245" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43685" i_stop="43558" i_length="128">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43557" g_stop="43410" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="393" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43409" i_stop="43316" i_length="94">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43315" g_stop="43158" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="551" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43157" i_stop="42035" i_length="1123">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42034" g_stop="41873" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="713" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U599449" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44626" e_stop="44470"/>
          <exon e_start="43773" e_stop="43686"/>
          <exon e_start="43557" e_stop="43410"/>
          <exon e_start="43315" e_stop="43158"/>
          <exon e_start="42034" e_stop="41873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGATGTGAGTCTTCTCTACATTTCTTCTCTGAATTTTTCATTTTTTCAATCGGTATCTGTTTGTGTTTTGTAGGTTTAGTTTTTGTGAAATTCTGGTGTTAGTTACACAGATATGGTTTGCATTTGTGATCGGATAGGGTTTTTTATTTGCGGAGAGTTAGGGTTTAGGGATTGAATTGTGTTCATTGTTTTTAATTTTGAGTTGCGATGTCAGGGATGTGAAAAAGGTTGGATTTTTGATTCGTGTGAGGGAGTTAGGGTTTTACTAGTCAATAGATCATGCTTTCGACTTGATTTTATAATGCATGTATTACTGTTCAGGCACATTTGATCTTGTATCCTCCATCAGGTTGGCCGTAGAACATTCAAATTGCAGAAACACTTGCCGCGACACCAATGCTATCAAATTAAAAACAGATGCCTAATCTGAACTCATCTACCCCAAATAAAGCAAGCATCTTTACTAGGTCCTAGTAAAGCTGCTTGCTTTATTTGGGGTAGATGAGCTCAGGTTGGTGTTTTTATTTGATTCTTTTGATAACCATTGGTGTTGCGGAAAGTTTTTCTGCATTATGAATGATCTACGGGCAGCCTGATGGAGGATACAAGCGTATGTGTTGGGTAAATTTGTCTGGGAAGGTTGGGACAGATGAGCTCACACTAATCTCTGAAATCCTTTTTTTTTCTTGGGACAATTCAGCAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAGGTTGTTCCTCTTTTAGTTGTTACTGTTTTGGTCTCTTCTATGTTTAAGAATAGTTTAATTAGGCTTATGTTTGGCTTAGTTTTTGTTATAACATTTTGATGTGATCATATGGTGAATTTACTTAACAGTGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATGGTGAGTGGCATTTCTCATTTACACTGGTGGTTAAATTTTGATTTTTTTTTTAAAATTGGGTTATAATTGTCCTATGGCTGGCATTGGTTTGTAGGAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAGGTATTTTCTTGTCATGTATTCGTGCAGCTTAAGATTGAATCCCAAATTCGTCTGTATGATTATTTGGAAGTCAGTTTTATTTCCCTTGGTTGCCATTTCATCTGTCTAGAAATATTCTCTGTTTCTCCCTCAGTTGAAGTACACTTATTTGAACTCTGTTTAGGAAAAAGAATTAAAAAACAGTGTCAAACCTTTCCTGACATTGTATGTCTATTTTTAATTTTCTTTTGAATTGACTTCCTTTTCTTATTGTCATAAAAACCAACATCTTCTGAAACTTTTTGAAATGATATGGCCTAGCACTCACAACGTATCACCAACACAAGAAAATATCAAGTCATCGGAGTGATACAAAAGGTGCCATTTATAACATTACCGTTTTCAAAAAAAAAAGGTGCCATTTATGTAATAATCGAAGTTTCTTTTATTAATAAGTAATTCTAGGGTTTAGTTTTATTAGTCTAGTCTAGATTTTGGTGAATGAGTGTTCTACTCGTTGGTGGTGATTAAGGAATATCCCTATAGTGAACCCATTTGGATTTCCCTTGTTATGGTGGACGGTGGACCCATTAGTGAGTTCAATCTCTCTTCCCTTGGATTCGTTGTCCATGCTTTCTTCTAAATTCTGTTTTCCCCTTGTCTAATTTCTTTTGTTATCCCCTTGTTTTATCTTATTTCTTTACTTGTCTAATTTCCCTCTGACCCTGTCCAGCCCGGGACAAACATATTTATTGCATTTAATATGTGGAAATATACTTCATCCTATTGCTTTAAGCAAATTTGCAACTTTGTTACTCCAGGCTGCTCCAAATTCCTGAACGAGGCATCATAAACTTTATTAAGCTTGCTGTTAGTAGTCACAAAAAATCATTAAAAAGAAAGAATGAGATTCCTTAAACTGAAAATTGCAAGTCAAAGGTTTTTGAGCTTTTGACATTATATGAGTAATTTCTTTGGCCTGTGAACTGTATAGGATTAAGTGATGTACAAGTTTGTTAGGAGATTGTCTTGATTGTGAGATTCGTGAACTGAATGGCCAGGGAGCCCGAGATGTCGGTTAGTGCTGAACGATGTGAGTTTGATTCATCCTGGCATGAATTTGATATTTTTTTCTTTGTTGCAGAGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGGACATATG</genome_strand>
        <mrna_strand>GCACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAG................................................................................................................................TGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATG..............................................................................................GAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGGACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601646" ref_strand="+" ref_description="SGN-U601646 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ttggggaaacaaaaaccaaaaaaaanaaatacacaaatttagggttttcaattcccttcttttctctctcccacgtttaatttgtttcttttttttttttccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="50505" stop="51208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50805" g_stop="50909" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U601646" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>105</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50805" e_stop="50909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGGAAACAAAAACCAAAAAAAAGAAATACACAAATTTAGGGTTTTCAATTCCCTTCTTTTCTCTCTCCCACGTTTAATTTGTTTCTTTTTTTTTTTTCCTCT</genome_strand>
        <mrna_strand>TTGGGGAAACAAAAACCAAAAAAAANAAATACACAAATTTAGGGTTTTCAATTCCCTTCTTTTCTCTCTCCCACGTTTAATTTGTTTCTTTTTTTTTTTTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U569376" ref_strand="+" ref_description="SGN-U569376 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157349987|emb|CAO39886.1| (e_value=3e-19) unnamed; (*ATH) AT5G06560.1 (e_value=5e-17) | Symbol: None | expressed protein, contains Pfam profile PF04576: Protein of unknown function, DUF593 | chr5:2003305-2006189 REVERSE | Aliases: F15M7.9, F15M7_9; ">
      <seq>gtctctctctatctctctattttcatttttctcccttggttttctcgatttcttcaattctccgggaagctagaacgataatttccatttttttccgggagaatttcacctccgtttctcagctacagctataccgtatgattttcaggaatgtgtattctgtattgcaactgagggaaggaggaattcatcctacgtgaagtcgaggggtatacatatatacataatcattttatcgaagatggagggattgagagcttgttgtacaggattaatcgtcttttaatttgtggtatttctgttattttttcctggttttcttttatgattctatttgaggaatcaatttctgaattgaggctggacgattgattggatgtgcaatagaatatggattctcaaaattcgcccccgacgaccagccaggtcaactgttgttactgcgggtgcagcagttgttctgcaatgaacaggtcctattcagggacttggctccgatctgtgaagcgaaaatttgatgaatataatgagaataagtttatgatcccaggctttgtcttacctctgaatgctcgtattgaaattgaaaatgaatgtacagcacttagggaaatggtaagtaagcaacaacacacaattcaggatttaggtgctgagttggaggaagaacgaaatgcgtcttcctcggcagcgaatgaggccatgtccatgattttgaggctgcaaggaaaaaaggcagagggtcagatggaatttaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="50625" stop="52659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50924" g_stop="51071" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51749" g_stop="52359" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="759" r_length="611" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U569376" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U569376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50924" e_stop="51071"/>
          <exon e_start="51749" e_stop="52359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAGGTACCTTAATATCATGGTCGTTTTTTTTTTTTAATTTTTTGTTTTTCGATCAATTTTAGATGTGTAAATATATATTTGTTCGTATTTATGTGCATCGATTTGCGTTTGTTTGATTTTTTGTGGTTTTCATATAAGGAATATTGATCATGTTTAAATGCAATGTCTGTTTTGATTGATTATAATTTTCATTTTGCGTAAGGATTGATTTGGTGTGATAATTGTATTAACGTAGGTTTAATGGTTCAGATTGTTGACGTGTGATATTATGTAACGATGGAGAAGAATATGATCTATTCAAACATTGTACTTCGTAAAATAATGCAGTACGGTATGATATGTTACTTTATGAAATAATACGTAACAGCCATACAAACAGAGTAGGGATACAACCATTTTGTTTTGGGTAGAAACCTCTGCTTAATTTATGTGAAATGTGTAGTTTCTTTGATAATGGTGGCGATGTAGAATTATTTATGTATTGAGTAAAATGTGGAAATACATATGGGCATCAACATTGATGGTATGAAGCTAATCTTGGCCTAGGCATTGCACATAGCTATTCATGTATTAATTATTGTTGGTGTCAGCTATTTTTTTTTGGAGTATAGCAATGTGAACCTAACTATAGGGTATTGTGCGGTAGGATTGGAATTGAAAAAAATGTGGTGTTTTTGCAGGAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGCAAGGAGAAAAGGCAGAGGTTCAGATGGAATTTAAA</genome_strand>
        <mrna_strand>GTCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTACGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACAATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGCAAGGAAAAAAGGCAGAGGGTCAGATGGAATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571658" ref_strand="+" ref_description="SGN-U571658 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|15240088|ref|NP_196274.1| (e_value=1e-80) expressed protein [Arabidopsis thaliana]; (*ATH) AT5G06560.1 (e_value=9e-83) | Symbol: None | expressed protein, contains Pfam profile PF04576: Protein of unknown function, DUF593 | chr5:2003305-2006189 REVERSE | Aliases: F15M7.9, F15M7_9; ">
      <seq>gagactatcaatgggcaattcgaagttcctcccttcgattaccctccattgaaatgcactattaatgaaaatcaagtatacacagaatttgataatgacattgttgatgttgagaaatatgcatttgaagagaccccacgttcgtgtgaccaattgcgggatttggagcataggatcaatcaattggagaggacgccaagaagcactgatggggatcttttcaagaacaacatacttgaaaaagtgatagttggtcattccccaaggaggaatagacatcttagaaagttttcaactgatagtgtaggatctcccttcattacaaataaagaaattaactcagatttcatctcagattctccaagatttggtgggagtattagaaaaacagaatattcacaaacagaagagcgttcaaacttgaggaaggtggataattcatcagaaattggagatgacatgagtgaccgagtttatacaattgattctgtacatcagggggctggatataatggtgtgtcagaactcaagtcttcagctggaatggttgacgactataccccaagggattcattaaataacacagattttggagatccagaggtcacaaagttgtattttaggctccaggcacttgaggctgaccgggaatcaatgagacaggctatgattgctatgcggactgataaagcacaggtgatattgctcaaggagattgctcagcagttatgcaaagagatgtctccagccgtgagaaaacctgcaaagaagacatctgtaattgggagcttttcatgcatgtctatattcaagtggatcacatgctttgttttatggagaagaaaagcacgcagatgcaagtacccatttggatcatcgaccaacaatccaggcttgctaatgcttttagacaagggacctcatgtggagcagtggagatgtctgatgagcacgcaggtgtaaaaaccagctccaagtagtccacatcgatcactgaagactgtaacataaacgtcagtaccgaaagggattgtagtcagattgattgctttttcattttactttctttctcccccttgtatttcttgctgcagcaaattgtgggttcactctgcactgtgttcttccccttaattcatggaattgtaacctttggctgaaccagtgtcatcgaaaatatagatgttccactgccagtttggaacttgtgaataattgtgatcaatatggcttgtttggtctctactcaagtttttatttttctttttacctgtatattacaacttgtgaatgaattttttctcttggtactttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="52279" stop="55884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52579" g_stop="53391" g_length="813"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="813" r_length="813" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53392" i_stop="54900" i_length="1509">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54901" g_stop="54947" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="860" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54948" i_stop="55126" i_length="179">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55127" g_stop="55584" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="861" r_stop="1319" r_length="459" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U571658" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1318</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52579" e_stop="53391"/>
          <exon e_start="54901" e_stop="54947"/>
          <exon e_start="55127" e_stop="55584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTACACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAGAAGACATCTGTAATTGGGAGCTTTTCATGCATGTCTATATTCAAGGTATTATTATTCTGTGTTAACTTTATGGTTTGCAATAGCTTGGTTTTCTCAGTTATGACTATACTTATGGTCTTTGTCCAAAGTGAAAGCACAAATTTTGGGCTATTGGCTCATTGCATGGACATTTAGAAGCAATTTTGTGACAGTAAAATACACTCCCTCCATTTCAATTTCCTTTTTTAATCTTAGTTTGACTTTCACTTGACATGAAGTTTAAGAAATAAAGAACACTTTTGAATTTTGTAGTTAAACTAAAAATGTGTGTAATGTACCAAAATGCCATAATGTAAGTGTTTTTGCTGTGACGTTTAAAATTTTTTGGGGTAATCTATTAATGCCAAAGTTATGTAATTATACAATGTATTAGAAAGGTTGATACATAGAACACACTTTTGTCATTGTGTTACTTAATTAATGTGCTTGAGTTCTTGTTGCAATTATCTAAAAACAAAAAGGCTTGAGTTCTTTCGAGTGCTTTATTTCATGCAAGATGGTGATTTATTTGCTGCACTCTGAATATAGTGCTGTGAGAATCTGTCTTCCCATTTCTTAGCTTTCTTCTTGTTGAGACTTTGGGGGCAATCTTTGTAAGCTGCTTTGTGTATTAAGATAAACCATTTAGAATTTAGGATAAATAGAACATTTTCTGCTGAGCATGGAGCGAGAGAAACCTTCGGTCACCTAAAAAGGAAAAACTGAGAATGGATTAGGTTGTGTCTTTTCTGAAACCTCTGCCGGATCTTGAGTTAGCTTTTGTGATATTGTCTTTTTCTTTTTGGATAAACTATGAGTGAGGTTTGATGTGGCTCAGTGCTGGTGTTTGGAGCAAATTATGTTTAAAATGTTTCAATAAGTTTAATCCAAATACACTTGATCTTCAATCAAGTCACCAGATAATATCATAAGAATTAGTGTCTTGGGCTTATGTCTAATCAAGAAGTGCATTCTCAAATTGGAAGAGCTGTCCTAACCCATGTAATGCGAAAGCAGAATGACATTTCAAATGGCAAGCATACAGATTATTTTGCCAGGTCATTATGATATTACTTGGATCTTGATGCATTTTCACAGGCATCTTCCTGTATAGCCATGTTTGTCCTTTTTGGACATGGACAGTAAACACAAAGCTCTCTACTTTAGTTACTTCAGGTGGGCCACTTGGACTCTAAACAAATGGGCTAGAACTAATTGTTTATTTCCTGTGAGGAGAAGGGGTTCTAGGGTCAAAATATCATAATTACCATTTGATTTTTCTTCTATTACATTGATGACACTAAAAGTGAACAAGGTAGACCTAAAGTCATGTTGTTAAGTTGTCTCAAATGACCTACAATCTCTAGAAACAATGTGGACCTAGCTTAGGATCATAGAAAATCAATTTGTTTTATTCTGACATCAATATTTCTCTCTCATCTCCGTCAATCCGCCTTTCTTATTTTGCCTTCCTGTTTCTGTGTTGTCTTCTGATTTATACTTAAGCTGATTTATCTTATTTTCTTTTTTATTCAGTGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAAGTGAGTTGATCATTGCGATTCTGTTTCTTTTCAATAAATTGTTTCTATACTCCTTCAACTTCCTACGATTCTCTTACCTTAGAAAAGAAAGCAACAACCTATTTCCCTTTCTGTCTGCTTGAGTTTAGTTGTTTGTTTGAGCAACTTTTAACATTCGATTAAATCTTGATACTTGTTAGGTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTA-CGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</genome_strand>
        <mrna_strand>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTATACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAGAAGACATCTGTAATTGGGAGCTTTTCATGCATGTCTATATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAA...................................................................................................................................................................................GTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACCGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599355" ref_strand="+" ref_description="SGN-U599355 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147840343|emb|CAN75104.1| (e_value=3e-50) hypothetical; (*ATH) AT5G06550.1 (e_value=4e-51)  Symbol: None | similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:At1g78280.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_327705.1); contains InterPro domain Cyclin-like F-box (Inte... ; (*SWP) sp|Q67XX3|FB252_ARATH (e_value=3e-50) F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550; ">
      <seq>gtacgttctaaaccaggggcaaaaccccctttgtttttgtaggagaaactgcaaatactactctcagtgaaaaacctcaaggctttggcggctcaaactatacttcacaacttcaacaatgctgggttccaagagcttgttattcaagcagcaaaaacgaaagagaaaaaatggtaagattaagaaatcgaagagaatttctgtttctgcaaaagaagaaactgtagcggaaccatgccaaatagccccagaagaagaagaagaagaagaggaggaaggtttcagtttgaaatctacagcacaatcagattcctacggagttcagccacttgggaatctttatttcaacccatcatcttataattcaagaaatactggtctaggtaatcttcagactttaactgatgagcttgttcttgatattttaggtcttttggaaggtacccatttaggtattttgtcaactgttagcaaaggtttctatattttctgtaatcatgaacccctttggaggaatcttgtattgnagacttgtaaaggtgggtttttgtttaaggggngttnnaggtctacttttattagtgcatataggccttcatttccagttttganttttggtttgaaagttagagacttttattctgantacttgtttcnnanttggtnatgtgctaatcttgaaatgaaacctgaatggntagagaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="56069" stop="57376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56369" g_stop="57076" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="708" r_length="708" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U599355" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56369" e_stop="57076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGGTCTAAACCAGGGGCAAAACCCCCTTTGTTTTTGTAGGAGAAACTGCAAATACTACTCTCAGTGAAAAACCTCAAGGCTTTGGCGGCTCAAACTATACTTCACAACTTCAACAATGCTGGGTTCCAAGAGCTTGTTATTCAAGCAGCAAAAACGAAAGAGAAAAAATGGTAAGATTAAGAAATCGAAGAGAATTTCTGTTTCTGCAAAAGAAGAAACTGTAGCGGAACCATGCCAAATAGCCCCAGAAGAAGAAGAAGAAGAAGAGGAGGAAGGTTTCAGTTTGAAATCTACAGCACAATCAGATTCCTACGGAGTTCAGCCACTTGGGAATCTTTATTTCAACCCATCATCTCATAATTCAAGAAATACTGGTCTAGGTAATCTTCAGACTTTAACTGATGAGCTTGTTCTTGATATTTTAGGTCTTTTGGAAGGTACCCATTTAGGTATTTTGTCAACTGTTAGCAAAGGTTTCTATATTTTCTGTAATCATGAACCCCTTTGGAGGAATCTTGTATTGGAGACTTGTAAAGGTGGGTTTTTGTTTAAGGGGTGTTGGAGGTCTACTTTTATTAGTGCATATAGGCCTTCATTTCCAGTTTTGAGTTTTGGTTTGAAAGTTAGAGACTTTTATTCTGATTACTTGTTTCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACCTGAATGGCTAGAGAGGGA</genome_strand>
        <mrna_strand>GTACGTTCTAAACCAGGGGCAAAACCCCCTTTGTTTTTGTAGGAGAAACTGCAAATACTACTCTCAGTGAAAAACCTCAAGGCTTTGGCGGCTCAAACTATACTTCACAACTTCAACAATGCTGGGTTCCAAGAGCTTGTTATTCAAGCAGCAAAAACGAAAGAGAAAAAATGGTAAGATTAAGAAATCGAAGAGAATTTCTGTTTCTGCAAAAGAAGAAACTGTAGCGGAACCATGCCAAATAGCCCCAGAAGAAGAAGAAGAAGAAGAGGAGGAAGGTTTCAGTTTGAAATCTACAGCACAATCAGATTCCTACGGAGTTCAGCCACTTGGGAATCTTTATTTCAACCCATCATCTTATAATTCAAGAAATACTGGTCTAGGTAATCTTCAGACTTTAACTGATGAGCTTGTTCTTGATATTTTAGGTCTTTTGGAAGGTACCCATTTAGGTATTTTGTCAACTGTTAGCAAAGGTTTCTATATTTTCTGTAATCATGAACCCCTTTGGAGGAATCTTGTATTGNAGACTTGTAAAGGTGGGTTTTTGTTTAAGGGGNGTTNNAGGTCTACTTTTATTAGTGCATATAGGCCTTCATTTCCAGTTTTGANTTTTGGTTTGAAAGTTAGAGACTTTTATTCTGANTACTTGTTTCNNANTTGGTNATGTGCTAATCTTGAAATGAAACCTGAATGGNTAGAGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601317" ref_strand="+" ref_description="SGN-U601317 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147840343|emb|CAN75104.1| (e_value=9e-145) hypothetical; (*ATH) AT5G06550.1 (e_value=5e-134)  Symbol: None | similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:At1g78280.1); similar to hypothetical protein [Neurospora crassa] (GB:XP_327705.1); contains InterPro domain Cyclin-like F-box (Inte... ; (*SWP) sp|Q67XX3|FB252_ARATH (e_value=5e-133) F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550; ">
      <seq>ggccggttttgttagaagggtgtttggagaattggcctggattggagaaatggaatagggattatcttgttaagaaatgtggggatgtgaaattttctgttgggccggtggaaatgaaacttgaagactactttaagtactctgatcaagtgagggaagaaaggcccttgtatttgtttgacccaaagtttgcggagaaaattcctcaattaggaaaggattatgatgtcccaatgtacttcaatgaggatttgtttagtgttttgggtaatgagaggccagattataggtggattataattggacctgcagggtctggctcgtcatttcacatcgatccaaattctacctctgcttggaatgcggtaaccaaaggatccaagaaatggatattatttcccccggatgtggtgccaccaggggttcatccaagccctgacggtgcagaagtagcaagtcctgtttcaatcatagaatggttcatgaacttttacaacgcaaccaagaattggaaaaagagacctatcgaatgtatctgcaaggcgggtgaagttatttttgtacctaatggatggtggcatttggtcatcaatttagaggattcaattgccattacacagaacttcgttagcaggaggaatttagtgaatgttttggagttcctaaaaaggccaaatgcttgcactcttgtgtctggaacaagcgacagagtcaatttgcacgacaaatttaagaatgccatcgaagcacatcttcctggtactattgatgagttgactctgaaagccgaggagaaaaaggcgcagcagaacaaacccttcttctgggagtcagtcactgatttcaatgcaggcgttttccaaattttctttttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="56843" stop="59348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57142" g_stop="57775" g_length="634"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="634" r_length="634" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57776" i_stop="58806" i_length="1031">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58807" g_stop="59048" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="877" r_length="243" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U601317" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57142" e_stop="57775"/>
          <exon e_start="58807" e_stop="59048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAGGTATGCTACTTTTGTCTCCTATATTTCTGTCACTTGATAAAATTTGATATTGTTTTCATGCTTGCTGACAAATAATTATATGTACTAGTTTCCTTAATAGCATGTAATGGTTCTGTTTTATAAGGTGGACACTAGATATAATGCAAAAGTTCACTATTGGTTTAGTAGCTGTAATTTAATATCACATATACTCTCAGGTTAAGCTCATTAACTAGAAAAACGAACCCATCAACTCACGAATGTTTGCTTGTTTCGATCTTTTATCACTGTAAACATTTCCTCTCATGTGATAGTTTTGGATAGACCACCTTAAAGCTTGAGATGTTTTTACTGATAAAAGACCTAAACAAACAAACTTTAGTGAGTTCGTGAACTATGGTGACTCATTTTTGTAGTATGGGATTGAATGTTTGTTGTGGGCTTCTTTTTAAGAAAAGATACTTCTTTAGTGTTCTATTCTTTCTCCCCTTTCTTCTAATCCTCACATATCCTAGTCAGGATTAATTAAGTCAAACCACGATAACCTCATCACTTGAAGATTTGTTCTCAAACACAGATATGCATAATCATTCTTAACTGAATTTGCTACTCCATTGTGAAAGAGTGCTGATGTTGATGCCTATCTGGAGAGAAAGTTGTATCATCATTTTGCAGCCTTAGGTATGCAGCTTTTCTTGTGCTATGGATAAGATGATATCTTCCCTAGACATGTGACGTGATCTCTTCTGTAGCTATTACTTTCATTTTCATCTTCTTGATGCTTTTTTTTAATTGGAACTGCTTACTTCATCTAAAAAAGAAAACTTTCCTCGATAACACTCTGAGCCCTGCACTTATGTCTGCTTAGGATCACCACCAATATTTTCTAAGACAACTCTCTTCATCCCCTTGTGTATCTGTTTAGGATCTCCTTCCCGGTGTGTCTATTTAGGATCTCCAGTGAGTTTGGAGAGGATAACTCTTTCAGAATTCCCTTGCTCGGTCCAATATCAATTTTTTGCTGTATTTTCAACTGTCATTTCGCCTTGCAGGAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGCAGAACAAACCTTCCTTCTGGGAGTCAGTCACTGATTCAAATGCAGGCGTTTT-CAGATTTTCTTTTTGAT</genome_strand>
        <mrna_strand>GGCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGCAGAACAAACCCTTCTTCTGGGAGTCAGTCACTGATTTCAATGCAGGCGTTTTCCAAATTTTCTTTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584987" ref_strand="+" ref_description="SGN-U584987 Tomato 200607#2 [31 ESTs aligned] (*GB) gi|75159637|sp|Q8S4R4|CRTSO_SOLLC (e_value=0) RecName:; (*ATH) AT1G06820.1 (e_value=0)  Symbol: None | carotenoid isomerase, putative, similar to carotenoid isomerase from Lycopersicon esculentum (gi:19550437); contains Pfam profile: PF02032 Phytoene dehydrogenase related enzyme | chr1:2092996-2096231 REVERSE | Aliases: F4H5.10, F4H5_1... ; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=0) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO; ">
      <seq>ataggagaaacctaaaagataactaaccattaaccaaagccagcaagcaccaaaaatttggccagcaaaaaaataccatattgtctcattccactttgaatcacaaaagtagaatcatgccaatccacttctctttccatttcaagcactacaaacaagggaagaacccttcactttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaatattctctgcttttgcagttgcagaggtaaagagttgtcaagattccatttttgtagtttattgtgtttgtaatcttgggtttccagcaatttaaagaaaaaaagattcaatctttttaatttatcagtattttggcagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaatagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgagaattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggacaaggctaagggaagaagagggggtactgtttccaatttgaaagcagttgtagatgtagacaaaagagtggagagctatggcagtagtgatgtagaaggaaatgagagtggcagctatgatgccattgttataggttcaggaataggtggattggtggcagcgacgcagctggcggttaagggagctaaggttttagttctggagaagtatgttattcctggtggaagctctggcttttacgagagggatggttataagtttgatgttggttcatcagtgatgtttggattcagtgataagggaaacctcaatttaattactcaagcattggcagcagtaggacgtaaattagaagttatacctgacccaacaactgtacatttccacctgccaaatgacctttctgttcgtatacaccgagagtatgatgacttcattgaagagcttgtgagtaaatttccacatgaaaaggaagggattatcaaattttacagtgaatgctggaagatctttaattctctgaattcattggaactgaagtctttggaggaacccatctacctttttggccagttctttaagaagccccttgaatgcttgactcttgcctactatttgccccagaatgctggtagcatcgctcggaagtatataagagatcctgggttgctgtcttttatagatgcagagtgctttatcgtgagtacagttaatgcattacaaacaccaatgatcaatgcaagcatggttctatgtgacagacattttggcggaatcaactaccccgttggtggagttggcgagatcgccaaatccttagcaaaaggcttggatgatcacggaagtcagatactttatagggcaaatgttacaagtatcattttggacaatggcaaagctgtgggagcgaagctttctgacgggaggaagttttatgctaaaaccatagtatcgaatgctaccagatgggatacttttggaaagcttttaaaagctgagaatctgccaaaagaagaagaaaatttccagaaagcttatgtaaaagcaccttcttttctttctattcatatgggagttaaagcagatgtactcccaccagacacagattgtcaccattttgtcctcgaggatgattggacaaatttggagaaaccatatggaagtatattcttgagtattccaacagttcttgattcctcattggccccagaaggacaccatattcttcacatttttacaacatcgagcattgaagattgggagggactctctccgaaagactatgaagcgaagaaagaggttgttgctgaaaggattataagcagacttgaaaaaacactcttcccagggcttaagtcatctattctctttaaggaggtgggaactccaaagacccacagacgataccttgctcgtgatagtggtacctatggaccaatgccacgcggaacacctaagggactcctgggaatgcctttcaataccactgctatagatggtctatattgtgttggcgatagttgcttcccaggacaaggtgttatagctgtagccttttcaggagtaatgtgcgctcatcgtgttgcagctgacttagggtttgaaaaaaaatcagatgtgctggacagtgctcttcttagactacttggttggttaaggacactagcatgatatctacttgttaagctaaaaagaaacatttgacacaaaaaaagaaagttcattatgtatttactttttctttatatcaataaactggaaaatgaggttccaattgaggttcctccagtatagaaatcacagattttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71617" stop="65753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71317" g_stop="70263" g_length="1055"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1054" r_length="1054" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69834" g_stop="69628" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1055" r_stop="1261" r_length="207" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90">
            <donor d_prob="0.357" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69537" g_stop="69438" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1361" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.883" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69046" g_stop="68964" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1362" r_stop="1444" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68876" g_stop="68820" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1445" r_stop="1501" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="68739" g_stop="68587" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1502" r_stop="1654" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="67954" g_stop="67876" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1655" r_stop="1733" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.918" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="67736" g_stop="67588" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1734" r_stop="1882" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="67509" g_stop="67375" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1883" r_stop="2017" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67268" g_stop="67155" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="2018" r_stop="2131" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="67006" g_stop="66896" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="2132" r_stop="2242" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="66803" g_stop="66695" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="2243" r_stop="2351" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430">
            <donor d_prob="0.074" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="66264" g_stop="66052" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="2352" r_stop="2564" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U584987" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71317" e_stop="70263"/>
          <exon e_start="69834" e_stop="69628"/>
          <exon e_start="69537" e_stop="69438"/>
          <exon e_start="69046" e_stop="68964"/>
          <exon e_start="68876" e_stop="68820"/>
          <exon e_start="68739" e_stop="68587"/>
          <exon e_start="67954" e_stop="67876"/>
          <exon e_start="67736" e_stop="67588"/>
          <exon e_start="67509" e_stop="67375"/>
          <exon e_start="67268" e_stop="67155"/>
          <exon e_start="67006" e_stop="66896"/>
          <exon e_start="66803" e_stop="66695"/>
          <exon e_start="66264" e_stop="66052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGAAACCTAAAAGATAACTACCCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAGGTTAGTTGTCTAAATACTTGCTTTCTGTTATTTAGGACATAACACAGAATACTTGCTTTATTTAGACAGAAAGCAAGTATTTAGACAAGTACACTAAATATCACGAATCGATCAACAAGTACACAACACACACCGCTCCATAGTCTGAAAGTGTGGAAGTGATTATGTTTTCATTCAAGAATGCATCCAAATATTACGTATAATGACTACATCTTTAACAATTTTTTTTAATCAAGTATGGTTTTCATTGATAATAACAAGGCCAACTTGGTCATATACAAGAGATATACCAAAAAGGTCATTAACATAGTTTATACTGGCCATGGTGTATGCTTTTTACTATTGTATATGGTCTGCAGTGCTTCCACGTGATTGGACTACTGTTGTTCCTGGTTAGATTTAAACTAATGTCTCACATCTTTTGACAGGGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAGGTTTGTCTTCATTAAGGTGTCTGCAGGTTTGGCTTAAATTTTGGACTCCTTGATTTAGACTCAAATCATATGATGAATATGGATGCACAGATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTGGTAAGTTTTTCCTTGCTTTAACTTCAAATATAGTATTCCTTGAATTCGCACATATCCATTGGTTGGACTAATTCAGTAATAAGTCCCCAATCATGGAGTCACTTTTTATCCCCAAGGGCTTAGTTCAAGTAGCAAAGTTTGTGGGACTTGTGACTTTGGTCACCGGTTTGAGCCCTGTGGCATGCGAACAAAGCTAGTTATTTAAGTGAAGAATGGTAAAGGGGAGGGGCCATTATCCCCGAGTTTTGAGCACTATTGATGGTCCTGAGTGTTTGCCCTCGGTCATCAAAAAAATTTAAGGAGTCATCTTTCACGCTGATGTGTGCAGCGCGCGACGTGCTTAATTATCCTACCGTAGAATCTTAATTTATGCCATCATTATTCATTACAGCCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAGGTGAGGCGAATAATCTGTGTTACTTATTATCAGCTCCAATGATTTCTTTACCTCTTAAAGAATTCAACTCCATTGTCTCTTTTGCAGTGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATGGTAATTCTGCATATTAACCTTAGGCCGTGTTGTGTTTCGTGATATTCAGTTCCACTTCCTCGTGAGTTTTCTTTCTGCAGGTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCTGTGAGTTTTCTGTCGTAAGACTATTTAACTTTTCTTATGATTGATTATTCCCATCATAAAATGCAAAAGCTGTAGTCTGGTGTTTGTGTTAGAAAGTTGTAGCCGACACTCTTTTGATGTTCAAGGACTCATGCTTCACACACTCATAACTGTGGTAAAATCTTCTTCCCATGTGATACGCCTTTGGTGTCCCTAAATGCATGCCGTTTTAAAATTTAAGGTTACATTAGCATGTCAGAGTGTTAAAACATTATAAGAAAAGAATTGGCTAGTAAGTATATAGAAAAAGAAGAAAAGAATGAGGAGAACGAAGAGGGAAGAACAAATTACTTCTGTTAAAATGTCATGCATTTGTTATAGTTGATTGTAATTGATATAGTGTACTATTTTGCTTATCACAACATTGTGTAGATTCACATCCCCTTTAATTGTATTTCAGTTACATCCCTGAAGTTATTCTACTGATGTAGGGTCTGTACTTTTACTGTTCTACATACATGAATAAATTGTACCTAACAATATAATGACATTGTATGTTGCCATGTCATAATGGTGTCTTGTGTAGCATCTTCAATGTTGTCTTTGCCAGTATCTGCGCAAGTTCATTTTCTCTAATTCTTCTTTTTCTTTAGGTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTGGTTAGTTTACAAGGAATCCAGCAAAACTTATATGTTTTCTTAAGATTCTTTCGTCTTAGGGCCAGTACTGTGGTATTCTTGCACATATTTGATTCTCTTTAAATCTCGTCATCTCATGTCAAGTGTCTTACATCTGTAGGAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAGGTACTACGGCAGTTCAATTGATTTGCTATTTATTTTTTCATACTTGATGTTCCCATTCATGATTCCTTGATTTTACAGGATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAGGTAAATTCAGTACACTCCTTGAGTGTTGTTGGTAGTAACCTCTTCCACATCTATGTCTCTTTTTCCTTTTTATGGAAATTAAAGTATGGCCCTTTATCCTTACTAGGGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAGGTTAAGTTCGTGATTTTATGAACTCAATAGTTGTTCATAATGAGCAATATTATCTGTCTTCAATAGCAAATCCACATGCTCTTATGCTTGCTGAAATAGTTTTGGCCGTGGAGTTACACCATCTATGTTTACAATTGAATTCTTGTAGGTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACTGTGAGTTAATCATCCTTTACGTATGTAGTTGCTTTTATTGTTCTGCTGGTACAAACAGAATAAACTGTTCCGTAATGTTTCTGAGCTTACAGGCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAGGTAAACATGATAGTCCAAATAGTTCATTTTCTGAGCTTGAAAATCCTAATAACATTTGTGCAATATCTATTTACACATCATAAGCTCGACCAAATATTTATAATGTGGCCTTCAAAAATGAAAATGAATGAGTATTTACAACGTCGAGCATCAATAGCCCCTTAAATTTGCTAGTAAATTTCATTTAGACACTCTAACTATAACATATTACAATTGAGCACGTGAACACATGATAAAGCGCCTGTTATATAAGATAAGTCAACCACACAAAATATGTGACCTCCTCCTTCAACTATACACATCAGCTTTAATTGGAACAAGGGAGAGGTTTATGGCTTAGTCAAGGGTTGTCGATGTGTTCCGCCTTAATTTGAAGTCCATATAAGTAACTGTCTGTTTGGTTTGACATCTTCTCTTTTTTCTGTCACAGGGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTTTAA</genome_strand>
        <mrna_strand>ATAGGAGAAACCTAAAAGATAACTAACCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATATTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAAT-AGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGAGAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG..........................................................................................ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG.......................................................................................TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG................................................................................GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAGCGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG...........................................................................................................................................GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG..............................................................................GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG..........................................................................................................GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG....................................................................................................................................................GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT............................................................................................GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584988" ref_strand="+" ref_description="SGN-U584988 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|75159637|sp|Q8S4R4|CRTSO_SOLLC (e_value=9e-30) RecName:; (*SWP) sp|Q8S4R4|CRTSO_SOLLC (e_value=7e-31) Carotenoid isomerase, chloroplastic OS=Solanum lycopersicum GN=CRTISO; ">
      <seq>ataggagaaacctaaaagataactaaccattaaccaaagccagcaagcaccaaaaatttggccagcaaaaaaataccatattgtctcattccactttgaatcacaaaagtagaatcatgccaatccacttctctttccatttcaagcactacaaacaagggaagaacccttcactttgctcatacccacctcatcaaaatccacctaaatacttctctcactttgctcaatcatctatatagcctaagaattgtcaagattccatttttatagttgttggtgtctgtaatcttggaatttgaacaatttaaagtgaaaagattcaagtttttagaatattctctgcttttgcagttgcagagctgcagaagtaaagaattggatagcttgaaacccacaaggcaaaagttctagtcttgtttggttaactttccagggagcccaaaattttgtgaaataagagaaatgtgtaccttgagttttatgtatcctaattcacttcttgatggtacctgcaagactgtagctttgggtgatagcaaaccaagatacaataaacagagaagttcttgttttgaccctttgagaattggaaattgtactgatcagcagcagctttgtggcttgagttggggggtggacaaggctaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71617" stop="70253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71317" g_stop="70956" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70955" i_stop="70843" i_length="113">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.890" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70842" g_stop="70553" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="652" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U584988" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71317" e_stop="70956"/>
          <exon e_start="70842" e_stop="70553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGAGAAACCTAAAAGATAACTACCCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGG</genome_strand>
        <mrna_strand>ATAGGAGAAACCTAAAAGATAACTAACCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATATTCTCTGCTTTTGCAGTTGCAGAG.................................................................................................................CTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGAGAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575212" ref_strand="+" ref_description="SGN-U575212 Tomato 200607#2 [20 ESTs aligned] (*GB) gi|28190687|gb|AAO33160.1|AF493563_1 (e_value=0) sucrose-phosphatase; (*ATH) AT2G35840.1 (e_value=1e-176) | Symbol: None | sucrose-phosphatase 1 (SPP1), identical to sucrose-phosphatase (SPP1) (Arabidopsis thaliana) GI:11127757 | chr2:15060702-15063084 FORWARD | Aliases: F11F19.25, F11F19_25; ">
      <seq>attgggttagctttgtgcttacaaaagaagcgccaaacaatttggatccacatggctatacgcaattaactgtcttttgcctatttgcgatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggttgaagccaatttacatcaatcatggataggctaaccagtgctgcacgtctcatgatagtctcggatcttgaccatacaatggtagatcatcatgattccgagaacctttctctgcttaggttcaatgctttatgggaggccaattatcgtgataactctttgttagtgttctctactgggagatcacctacactatacaaggaattgaggaaagaaaagcccatgctaaccccagatattacaattatgtctgtgggaactgaaataacatatggtaacgctatggtgcctgatgatggttgggaaacttttctgaataacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcagagaggtgtgctgccggtatcatacaagccattggtcatttcaacctaggtccaagtacctccccaagagatgttacagatttatcagattgcaagatggacaactttgttcctgcctatgaagttgtcaaattttacctgttttttgagaaatggaggcgtggagaaattgagcattctgagcattatctgtcaaacctgaaagcagtgtgtagaccatctggtacttttgttcacccatctggtgttgagaaatcccttcaggaatgtgtaactacattcggaacatgtcatgctgacaaacatgggaaacaatatcgtgtttgggtcgatcaagttttaccttcacaggttggttcagactcatggttagtgagtttcaagaagtgggagctctctggtgaaaacaggcgatgctgcataactacagtcctattaagttcaaagaataagactgttgcagacgggctcacttggactcacgtacatcagacatggctgcacgacgatgcatcaagtgactccgcgtcctggttcttttagattgcctttctcagtgtattaactctgaaaactcagcaccccttttaccagtttcacacccagaataaacacaatatacaaactatagttgataatcaatgtattaactttctcctcctttgataatcaattattaccatctaaaccagtgaagatggctttgccttttttgtgtagtataaagaattatattaatatctatagttcttctatttgattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71602" stop="78148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71902" g_stop="72043" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73912" g_stop="73994" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="225" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.916" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74061" g_stop="74360" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="525" r_length="300" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="627" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="822" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="75090" g_stop="75380" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="823" r_stop="1113" r_length="291" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479">
            <donor d_prob="0.859" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="75860" g_stop="76046" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1114" r_stop="1300" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="77395" g_stop="77441" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1301" r_stop="1347" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="77531" g_stop="77848" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1348" r_stop="1665" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U575212" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71902" e_stop="72043"/>
          <exon e_start="73912" e_stop="73994"/>
          <exon e_start="74061" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75380"/>
          <exon e_start="75860" e_stop="76046"/>
          <exon e_start="77395" e_stop="77441"/>
          <exon e_start="77531" e_stop="77848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAATTTGAGTTATGATGTTGAAGTGGGAATTTCCCCCCTAATTTAAAGGTTTTTATAGTTGGAAATGGATAAAACGTTGCCATACACTTGTATCCAGGGGTGAAGCTAGTCGGAGTGAAGGGGGTTCGGTTGAATCCCCTTCCCCGAAAACTGGCTTTGTTCAAACTAGTGGGGTAAGTGAACAAGACAGGTATACAAGAAAGACATAAAATAAGAGATTTTTTTACTGCTATATGAGTTTTCATGAAGCTGGACTTAAACCTTTAATATTTCATATTCAACAGAGATATTTCTTTCTACTTGTCTCTCATTTCTTAATGGTGTCCATCTTTCTTTGTGGGGTATGTTGAGTTAAAATTGGATGGATACTTTTGCTTGATATACTAATGAATATTACTAGCTCCAGGGAACTTTTCATTCTCTAGGTTCTTTTGTTTTATAGATAATATCATTGAGACTCATTTACCCTATATGTTCCTATATGATCGAACAACTTATATTGGGGAAAGGGGATGGATTTCTATAATTCGACCATTATGGATTAGCTGGTCATATCTGACTATCTCAGCATGCTCCACCCTGAAAGAAAGCCTGTTCTGTCCCTCATGGGTAATTTTGTGTAAGAGAGGAATTTCCTTGGAATGAGACTTGATAAAATTAAAAAACTATATCCAGTAAACTCATCTCTAGTTATATAGTCTTACCAAATCTCGCTCGTGCACCAAACAATTCTTATGGGTTCTATAAGTAATTGTGGACATATTGTGATTGGGTCACAATCATTGACTGCACTATATAGAGAAAAAGCTGGCTTCTGTGTACTAGTGGGTTTCTGTTATGAGCTTATCTCTAATTGACAAGCTTTTGATGTTGCTCTCATGAGTGCTATCTAAACGATGATAAAGCTAGCACTTTTTAGGAAAACGTGTCTCTATTATCCTCGAGAATATTATGTTATCTACTGTTGCTTCCATTTTTATTGTTCATTGTTTTTCATATCGTTGTGTGTTCCAGAGGATAGGCAAGTTTAGCAATAATTCTGAACTTCTTCAACTTTTTTATTCCATTTTGTTCTAGGTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATGGTGGGTGTCTAGTTGTCATTTCTCCTCCATATGCTGCTGTAACTTACATAAGACCTTGCTTTACAGGTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGTGTATGTTTATCACCCTATACCTACTGTAATTTCTTGTCTTATGAGTAGTGATGTGTATTTCTTATTTTCGTGTATGAATTTAACAGTGCATTCTAAAGAATTTTTCCTCCCCGAGTCTGGACAGAATATAAGCACTATATTGTATTTTTTACTTGTAGCTTCAATTGAAGTATCCTCCTTGTGTTGCTGACTCTCTCCACCATCATAAAGAGAATCCTGACTTACTCCACTACTAAGAGAAGCCTGTATAGTTATATTTGTGGTAGCTACATATATGAACTTAAAGTAACAAACTATAAAGCAGTATTATATGCTCAATTAAAAAGAAGTGATATCGTATACGTTCCATGTACTCTCTCTGGTTTTTGTTTTTATGGTTGAGTGGGAGGCTTAAGGTGAGAGCTGGGTTTAATTGAGGCCATTGCTTCTCATTGTGGTTGGAGATCCTTATTTTATTTTAAACTCTTCTGTTGCTGCAGAGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTGGTGAGTATATGTTACCTCATGAGCTGGTCTTTCATTTTGCTCTCAGCTTTGTAGTACATGCTCCTAAATGTCACTGTATTTCTCTTCACTTTTTTTTTTTACAATCTATCACATGCTTTTCCCACATTGAGCGTTTGTCGTAATACTTCCAACTTCATTTACTAAATCCTGGCCCTCCCTCGGTGTGTTTGTGTGAATCAAACACCCTTTTGTTGGATCTGCTCTCCATCTTAATGAATAATGAAGATATGTTTTCTTCCTTCCATGGTAGTGAAGTAATTTTCTGAAGAGGCTTAAGGAGGTGTACCCAAGACTCTTGTAGTTCATTAACATAACTTGGTATTAGATCTGCTTACATTTGAAATTCACGTCTTAAACGGAGATGGGATAAGAGATATTACTTGTGTTGTTGAAAGTAGAAATCTTTTGGGACTGAGGCCTAGTAGTTATTATTGAAATAGAAATCTTTTGTTCATTTCAAGCATGTATACTTCATTTGATGTCAGGCTTTGTGCATGTTGATGTTGAAGCTCTATTCCAGCAATAGAGACGACTATTAGGAAACAGCTGATGCCCAAAGCCATTCTTAAATATGCCTAAAATAAGATAATCATTTTTGCTCATTCTGCTGGATTGCTTTCTCTTGCTAGCTCAATCATACAGCAGGATTACTTGAACATTCCTGCAATCACCACCATCATAATCTACCAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATTTTTTTCTCTTTGCTGTCTAACAAATTGTTAATTCGTGCAGGTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAGGTAAAATTTCAACATTACAGACGGAAAGGAATTTTTCCGCGTAAAAATCATACAACTGAAACCCGTTGCAATCTCCTCTTTACTCGCAGAATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAG</genome_strand>
        <mrna_strand>ATTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG..................................................................GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG.........................................................................................AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587787" ref_strand="+" ref_description="SGN-U587787 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggatctctttacacccaaaagattcatttttttgtttccccaaatccaatttcaggtaacccttttgctccctctttacatttttgtacatttctggtgattaatttgtatctcgactaatttgtactttgaaggaacccttttgaaaactatattgtgggaatagagaaaagattagtttttttatatgtatgaagtgttgaatccctttgttatagtgaagtggcaaaagggtgttcaagattatgttagatcataggttaaaattttaggtgtaatgggccatatgtgttagtattagatttgctgctgaggattaactaatctgttcaacctgtattgggatttgaagtaagaatgcggttctgagtagaatctgattgtctctgtataaatttgtgtatactgaggaagatgtgaggatgaacttgattgaattttggtgttgggttgagttgatttggattttctttggtgattttgggtaaaaaatgttattttgattgattcaggactctagacctagatcccttttcgtggggtttcttttattcgtgaagacttgatgagtagttattgaatttaggagtagtaatccaagaattggctttggaatgaaaaatggaagttctcgacatcccattttacagtcccctttttcttgatcctgtatttgggtttcagagtttaaggatataacctaacttgtcttaaatttttcgcatttactgtactgtacacaacagataagatgacagatctcctctgtagagaatttggtactttaacatgctagtttgtgaatctgttaaatacttgtcaaatttaagcttgttcaagtaatatttatctttaattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="71690" stop="73137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71989" g_stop="72837" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="860" r_length="860" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U587787" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71989" e_stop="72837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTG-----CGTGT-ATCTCGAC--T-AATT--TGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</genome_strand>
        <mrna_strand>GGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGTATCTCGACTAATTTGTACTTTGAAGGAACCCTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATGTGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTACACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601138" ref_strand="+" ref_description="SGN-U601138 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caaccatacacgaaattatctgtttcttatcctactaaacttctagagcatacaccaaatccactgttaagctcatacaaaacctcttcaagcttcaactgtggataatgatagttgaagcatagagagtcgagcatagtaatgagtcaagcatttagctttttcagttgagcttgtgtgaggtttaggtgcccctgatcattggattacagtgcctacacagctttggtctgataagaaagtctaacctcaatagtcttaccaccgaatacgctccctatttcctatctgatttcaccgcaggtagtcaagtttaggtaaactatcatgcgtattcctgcttttgatgggatgtgagatgagttcatgtaatgtagcttctgatatttcatgccgttactcctttcataaggtcgttaatggtcggtctgtactggatcagcacagtagcggagcagctcctgcatgcctttacctgcaacaaatggacttaactgttagtctctgaaggaaaaagggggctgtcaataaataaccatcaatttgttgcaagcaggataattaatgcttatgcaacacttgcattttcgatctcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="76455" stop="77654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76755" g_stop="77354" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U601138" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76755" e_stop="77354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATT</genome_strand>
        <mrna_strand>CAACCATACACGAAATTATCTGTTTCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAATAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570582" ref_strand="+" ref_description="SGN-U570582 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|4105784|gb|AAD02549.1| (e_value=5e-44) PGPS/D7 [Petunia x hybrida]; ">
      <seq>ttttttttcccattatctttctttttaataaattaaaaagaaagacaatggcatcttttaacaaaattattattgtatttaccatttctttattctttacaacaattccttctaaggcatataatattcaacctaaaccccatgcaccttcccatgcaccaattaaaccatcctcatcctcgtcctcgtcctcgaaggcaactattgaaattccgaaaaatatacctatcgtcccaaatactagagatgtatccgtatttatcaactcgatgatggaagcaacgatgggaaagacagaagaatttatcgcgaatgtgattgaacaacgtctagaggaacctgatactgacatatacgcgacggattgtctagagacatgtaaatcagtgtatcaagatgctgtagatgcaatgaagaaagctgaagaagatgtgaaatcaaaagaatattataaagcagatttggatattagtgcaataacaacagatattgatacttgcaatgaatgtgctgtttcaatatatggagaggatactgaatttaggcaatttgataattggattcaaggggttgctactgagtgccttgataaaattagtgccttaactaaataaattttgataaatatgttgttttgagattaaatatggaaagatttggtgatgaaatcttggaacaaccaaaatattttaggttaacaaaaggaacaacacactatatgatagtgtttgatnttnt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="-" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="80660" stop="79320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80360" g_stop="79618" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="-" ref_id="SGN-U570582" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U570582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80360" e_stop="79618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCCGTTATCTTTCTTTTTTATTTATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCGTCCTCTAAGGCAACTATTGAAATTCCGAAAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGTGAATGTGATTGAACAACGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTAACTAAATAAA-TTTGATAAATATGTTGTTTTGAGATTAAATATGGAAAGACTTGGTGATGAAATCTTGTAACAACCAAAATATTTTAGGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATCTTTC</genome_strand>
        <mrna_strand>TTTTTTTTCCCATTATCTTTCTTTTTAATAAATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCG------AAGGCAACTATTGAAATTCCGAAAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGCGAATGTGATTGAACAACGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTAACTAAATAAATTTTGATAAATATGTTGTTTTGAGATTAAATATGGAAAGATTTGGTGATGAAATCTTGGAACAACCAAAATATTTTAGGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATNTTNT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596912" ref_strand="+" ref_description="SGN-U596912 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>aaaagatcaaacactatcatatagtgtgttgttccttttgttaacctaaaatattttggttgttacaagatttcatcaccaaatcttttcatatttaatatcaaaacaacatttatcaaaatttatttagtcagggcactaattttatcaaggcactatgtagcaacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="79319" stop="80089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79618" g_stop="79789" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U596912" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79618" e_stop="79789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGATCAAACACTATCATATAGTGTGTTGTTCCTTTTGTTAACCTAAAATATTTTGGTTGTTACAAGATTTCATCACCAAGTCTTTCCATATTTAATCTCAAAACAACATATTTATCAAATTTATTTAGTTAAGGCACTAATTTTATCAAGGCACTCAGTAGCAACCCCT</genome_strand>
        <mrna_strand>AAAAGATCAAACACTATCATATAGTGTGTTGTTCCTTTTGTTAACCTAAAATATTTTGGTTGTTACAAGATTTCATCACCAAATCTTTTCATATTTAATATCAAAACAACAT-TTATCAAAATTTATTTAGTCAGGGCACTAATTTTATCAAGGCACTATGTAGCAACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582731" ref_strand="+" ref_description="SGN-U582731 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>caattcaaaatttgaaatgaaagcaactttttttcaacctctatttaaaattcaacttccccactccactctctccagatctaaatctcaatatctctctcttccatggcgattcgaactatctacggattgatattcttagcaacatccagcttttgcttcatcttcctctatctcgctcttcaaccaatcttctatttcacctcctaacaccgccggcggtgccactatgaaccgaccgatatggtggaccggtagcagagtcgatgaagaacaatttttttttccttccacggcggcgacgcgaaattccggcagatcggttcgtagatgaatacaagtatgttgaatgtatacttttgttttcattttagtttagaacggaaaaatcacagtgatatttggtttttgttttgacggatctggatttgatatttttgtgatttcgtttgtttcagcttgaaattttgttgttaatcatagagatttataattttgcaaaaattaatttcttcgaacgattatgaatttatgaattcattttgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="87105" stop="88253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87405" g_stop="87953" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U582731" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U582731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87405" e_stop="87953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTTCGAACGATTATGAATTTATGAATTCATTTTGTTGT</genome_strand>
        <mrna_strand>CAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGTTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCAAAAATTAATTTCTTCGAACGATTATGAATTTATGAATTCATTTTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571551" ref_strand="+" ref_description="SGN-U571551 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|157343365|emb|CAO67416.1| (e_value=2e-15) unnamed; (*ATH) AT2G27180.1 (e_value=2e-16) | Symbol: None | expressed protein | chr2:11627311-11628252 FORWARD | Aliases: T22O13.5, T22O13_5; ">
      <seq>ttaattctccagctattttcggagaggggtaatttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgcttaccagatttctagtccgattgcgatggtcggcgccggcgccggaaacctagcaaccgataaggatgctttggagctggagaaggaaatgtgggataagttttacggtactgggttctggagaagcccatctcaacgaagtgaaatgtaacggcttgggatgaattaatgtgtataggtggttgaatgaagaagagggagaaattgttctattttctttcttttttaatattttaaactctctttgtaattaaaaactcttttaaactcttgtatccaccaaagcaatctttgtattatattcttcaatttctttgtcatattttcatttcaagaatcaaaatcaaagtatattgttcatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94577" stop="96452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94877" g_stop="95561" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95953" g_stop="96152" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="896" r_length="212" r_score="0.810"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U571551" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>885</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U571551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94877" e_stop="95561"/>
          <exon e_start="95953" e_stop="96152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTCCAGCT-TTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACGGTAATTTATACGATTAATTTATAAAATAAGTTAATTCTATATATCAAAAATCAAAATTAGACTTTCAATTTATCATAATAATAATAGAGTGTTAAATAGTCACTCATTATGCTATTATCGAACTAAATTTATGATGAATTTCGGAAAATAAAGTGAAAACGCAACATCCTTTATCCATTACTTCGAAATCTTTCGTAAATTCATATCAATTCCTCTTTGTAGCTCGTAAAATGAATTAATTTCATAAATTCCATAATATTGGTATTTCATCATGCTTGTTTTAGGTAATTTTTTTAATTTATAAATATTATTTATCTTGTAAAATTAATCGAGGTATAATTTGCGATTATTATGATTATAATCAATTGTGTATGTTTGTTGTAATTTTCAGGCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATT---AA-------AAACTCTTGTATCCACC-AAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATC-AAGTATATTGTTCAATTCC</genome_strand>
        <mrna_strand>TTAATTCTCCAGCTATTTTCGGAGAGGGGTAATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGAAGCCCATCTCAACGAAGTGAAATGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAATTGTTCTATTTTCTTTCTTTTTTAATATTTTAAACTCTCTTTGTAATTAAAAACTCTTTTAAACTCTTGTATCCACCAAAGCAATCTTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCAAAATCAAAGTATATTGTTCATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583320" ref_strand="+" ref_description="SGN-U583320 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|30688252|ref|NP_851051.1| (e_value=1e-47) zinc finger (C3HC4-type RING finger) protein family [Arabidopsis thaliana]; (*ATH) AT5G22000.1 (e_value=1e-50) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:7277199-7280258 FORWARD | Aliases: None; ">
      <seq>ttgtctctgtcttctcgaatttctaggttcctgaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtgaatgctaaagactgcctgtagttaaatgtttgatatttgtaatgttatgtactctattaccatagtgactttgatagtgtgtatatatctgtttttttcttctgtaggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatgtacctggcgacattaaagaacaagaacttgcttttttcatctgatttctgagtttcacaagctagcangttctgtttacctctatttattcttcattcatggnactccagttacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108733" stop="112538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109033" g_stop="109142" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109915" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="418" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="481" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="112012" g_stop="112238" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="708" r_length="227" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U583320" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109033" e_stop="109142"/>
          <exon e_start="109608" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCTGTCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTG</genome_strand>
        <mrna_strand>TTGTCTCTGTCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTACCTGGCGACATTAAAGAACAAGAACTTGCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCANGTTCTGTTTACCTCTATTTATTCTTCATTCATGGNACTCCAGTTACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U587832" ref_strand="+" ref_description="SGN-U587832 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|18420424|ref|NP_568410.1| (e_value=7e-57) zinc finger (C3HC4-type RING finger) protein family [Arabidopsis thaliana]; (*ATH) AT5G22000.1 (e_value=6e-59) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:7277199-7280258 FORWARD | Aliases: None; ">
      <seq>tcttctctaatttctaggttcctcaaaggggccttatcgggtcaacaattaattttcttcttcatccaatttccggagcctttttctaaattcatatcatgtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaacgaggaattcaagatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgctaaagcgatcctccctcggttactagctgcaagcatgaatttcatctgcagtgcgtcctgcaatggtgtcagataagttctaattgtcctatgtgttggcagtccatatgtctgatagatcagatgagttgacttccctctttcagtcaagaattgttcgaggctgtggaacaagaaaggaattttagagttaatgcataaagaaatgctacagtatttcaacttactgcgctgggagattttgaactacagcatttacctgtggatattgatgatcctgaactagaagagcgcattcttcaacatttggctgttgctgcttcaatgggaagagctcaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108742" stop="112620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109042" g_stop="109142" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="251" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="298" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="0.91"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="361" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="111993" i_length="77">
            <donor d_prob="0.560" d_score="0.96"/>
            <acceptor a_prob="0.181" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111994" g_stop="112120" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="488" r_length="127" r_score="0.953"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="0.92"/>
            <acceptor a_prob="0.969" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112321" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="489" r_stop="578" r_length="90" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U587832" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U587832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109042" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="111994" e_stop="112120"/>
          <exon e_start="112232" e_stop="112321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCG</genome_strand>
        <mrna_strand>TCTTCTCTAATTTCTAGGTTCCTCAAAGGGGCCTTATCGGGTCAAC-AATTAATTTTCTTCTTCATCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAACGAGGAATTCAAGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCTAAAGCGATCCTCCCTCG..............................................................................................................GTTACTAGCTGCAAGCATGAATTTCATCTGCAGTGCGTCCTGCAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGATAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATATGTCTGATAGATCAGATGAG.............................................................................TTGACTTCCCTCTTTCAGTCAAGAATTGTTCGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCATAAAGAAATGCTACAGTATTTCAACTTACTGCGCTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTAGAAGAGCGCATTCTTCAACATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583318" ref_strand="+" ref_description="SGN-U583318 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157350007|emb|CAO39906.1| (e_value=2e-73) unnamed; (*ATH) AT5G22000.1 (e_value=7e-75) | Symbol: None | zinc finger (C3HC4-type RING finger) family protein, contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) | chr5:7277199-7280258 FORWARD | Aliases: None; ">
      <seq>ggttcctgaaaggggccttatcggttcaacaaattaattttcttcttcacccaatttccggagcctttttctaaattcatatcaggtttgtaaggtttttgggaatggatgaggtcaagaaatcagagggtcatatgacatcccctgcagcttttgtggaaggaggaattcaggatgcatgtgatgatgcttgcagcatttgtctcgaggctttctgcgaaagcgatcctccctcggtaactagctgcaagcatgagtttcatctccagtgcgtcctggaatggtgtcagagaagttctaattgtcctatgtgttggcagtccataagtctgaaagatcagatgagtcaagaattgtttgaggctgtggaacaagaaaggaattttagagttaatgcagaaagaaatgctacagtatttcagtttcctgcactgggagattttgaactacagcatttacctgtggatattgatgatcctgaacttgaagagcgcattcttcagcatttggctgttgctgcttcaatgggaagagctcaccatgcgggtcgaagggagggctcaagaaatcgttcatccaccaataaccgtccacaacttttagtatttccaactcatcataattcatctcctaccgcttctgtttcaccttatcctactggatcactttctgatcctgctgcaatcacaacagttgattcccctcttcccattagctccggtagcagtgattcaccacgacagatgccttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="108758" stop="112828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109058" g_stop="109142" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109608" g_stop="109758" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="236" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109869" g_stop="109915" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="283" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111854" g_stop="111916" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95">
            <donor d_prob="0.560" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="112012" g_stop="112120" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="455" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111">
            <donor d_prob="0.341" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="112232" g_stop="112528" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="752" r_length="297" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="SGN-U583318" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109058" e_stop="109142"/>
          <exon e_start="109608" e_stop="109758"/>
          <exon e_start="109869" e_stop="109915"/>
          <exon e_start="111854" e_stop="111916"/>
          <exon e_start="112012" e_stop="112120"/>
          <exon e_start="112232" e_stop="112528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAGGTAAAAATAAAAAATTCACAATTTTGCGAAATGCTACGTGAAATTCTATGTATTTTGTTCGAAATTTGATTTTTTTGAATTGCTAATTTTGGTGTTTTGAGGGTATTTTTTAGGATATGGAATGTAATAAGGTGAGATTTTAGATTGTTTATGTGTAAAGTTTGAATCTTTATTGAGATTAATGTTGTTTGGGGAAACTAAAGATTCCTAAATTTTTTTGTTTGTGTGTGTATTTGTAGAATTAAAATATGTATATGGTGTTAGTGTTGGATTAAGAAATTGCCCATGTTTGTTGAAAGTATTAATATGGGTGATCTCTTGTTGGGAAAAGAGATGAGAAATTTGCAGTTCTTTGGTTACTTTTTTTTCTAGTCTGGGATCTGTTTTTACAAATTTTTAGCTTTTAGAGGAGGCTAGTTTGTGTTATGAGATCTGAAATTGGGCTTGTTATTGGGGATTTGTTAGGTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATGGTATGTATCTTTAAAAATCCTGTCTTTACTATCTTTGTTGATTTTGAGGATATCAATTTGCTATTCTAATTTTTGTTAGGCAAGTAAAATATTAGTGAGGTATTTAAGATCAGCTGACCTAGAGAGGGCAACAATTGAATTAGATTGCTATTGTGTATTTTGCTCTTTTTTCCTTTTGTGTGTGTGTGTGGGTGGGGGGGGGGATGATGTTTGTAACAAAATATGAGATTGAATAGCAAATAAAAAGGTGAGAAAGTTGTTGCTTTAACTAGTCGCAAGATGATCCAGGGAAAGTAGATCGTATTTGAGCAAATTATCTGTCACAACTTTGAAAATCAATGTTACCTAACGAGGGATAAGTGTATAATGTACACACACACCTATTGGTCCTATTGCAAGGTACTGAAGAAGAAGAGAAATCTGTTAAAAGAATTGAAGTGATGTTATGATTCTATTGCTATGGACTTGAGTCCCACACTTGTTTGATTGGGAGTGACATGGGGCTTATATAGCCTTGGGCTCTCCCACCGCAGTAGCTGCTTTTGGGGTGTGGTTATCCTTGGGTTGTATCAAGTGGTCTTTGAAAGGTGATTGGTGGAACTTGACATAAGTGAGTCTATTGGTGGTTGTTATTGTTTCTTTTTTGGGTCAAAAGGGTGGTTGTTATTGCCGTTGGCATATGGAACTGGCTCTTTTTTTTCCTTCCCTTTCCAACCATCTTTTAGTACTACCTCCATTTCAAAAAGGATGACCTAGTTTGACTTGGAACGGAGTGTAAGAAAAGAAAGAAGACTTCTTAATCTTGTGATTCTAAATTATAGCTATGTCAAATATACCAAAATGCCCTTTAATCTTGTGTTTTTAAACATGCCACGTGAAAAGTTAAAGTTAAAGTGTTGCCAAAAAAGGAAAGGGGTCATTCTTTTTTAAACAAACTAAAAAGGAAATAGGGACATTCTTTTTGAAATGGAGGGAGTAGTAGTTACTCAATGCTGTATATTCTTTATCACATAGTTTTTTGGACCATTTTTGTTTAGCATATTGCTTGCTTTCAGAAAACCAAATAGTTGAAGTGCAAGCAAGTTGGCCGTGATACTGCCTTTATGAGAAAGAAAATGAAAAGAACTACTACTACTATCTCTTGATCTCAAGATAGTTAGAGTCGGCTATATATTGAATACCAAGGCTCCCACAAAGATTGCTTGCTTCCTTCACATGTGCCGCAGGCGATCCAGTTTCACCAGGTAAGGAAACTGGGATGTGTAGTTGATGTTGCACGGGCAAAAAACATAGAGAGGATTAAACCATTTACTTCAATACTGTGAGTTTGCAGAGCTTTATGTATTCTTAGTTCCACTTCGCTTGGGTTTTAACAAACACATAAAGGAAATGCTAGCGACATTGAGATTAGACAGGGTAAAGAGCAACAGAAGGCATGCTGATAGCTCTTTTGAGTGCTTTTTGGATGTATTGTAGTAAGGAACAAAAGGTTTGACGGAGTGGAGAAACAAGCACGAGGCATATAGAGTTCAGTATTATTCTGTATTAAGCGGTCCTACTTGAACAGCCATTTGGATAGACTTATTGGAAGTCAATGTTGAGCTTTTGTATTACTTGTTACCATATTGGTAGGGATTAATTAATTACCTCTTCAGTTTATCAAATATAATGAAAGACCTAAAAATCATTGCCAATAAATGAAATTGGTAGTTGTGTTTATAAAAATGCATCGTATACCGTGCGTGAAATTATGTGTCTCAAAAGTTATTTCCCCCCCTCCGAATAATCCTTTATTTTGGGTGGGGTTGTTTGATGGGCGTGGCTTATAGACTGGATGTTAATTCTGGAACATGAGAAATAAATGATTTAGGGACTATACTAGTCATGATGAACATTGAAGTAAACAGTCTAATTAGTTTAATTTTTTTGTTAAAACAGGTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAGGTTTCTTTGGCTTCATTTATTTCAGTTCATAATTTTTATGATCATGATTCACTGGTACAGCCGTTACTTGACATCAGTTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTAC</genome_strand>
        <mrna_strand>GGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG..............................................................................................................GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG...............................................................................................TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT...............................................................................................................TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAAGGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2176" PGL_stop="2702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2176" e_stop="2702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="2176" e_stop="2702" e_length="527"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2176" stop="2702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601119" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATGACCAAGTGCGCAAAGGTGTCACATTCTAACATGTTTGTGTTCTCCCTTTCAGTTAGGGGGCTTTCAGAGTTACATATCTGTATCAGAATCAATGAAGTTATAATGTGTTTAATGTGTCGCTTTCTTCCTGTTGACCACCTGATTTATAAGCCTTTGCAGCTTTATATTTTAATTCAATTCCAACAAACTTCTACAATTGGAAGAATCGGTATTTTGAAGTGCATGTCTTGCATAATTTAATGCGATATTTGAGCAGATATAAGTTGTCATCTCTCGGACTCTCGCAACTTCATTTCCACCATTTTGACCTTCAGCTGTTTAGTAATATAGTAAAGTTCTGAGAGACAATTTGTATTCCTCTACATTACTAGAATGTTCTTCCATATGCCCCCTCTATTTCATATTTTTCTCTCAATGTGTACTTCAACTAACTTAGGGTTCATGTGGTTAATTAAGAATTATAGTTCAATTTGTAGGTTAATTAGCACAATATATACATAAGCCAAATGAGCTTAAAATAATC</gDNA_template>
            <first_frame> D  D  Q  V  R  K  G  V  T  F  *  H  V  C  V  L  P  F  S  *  G  A  F  R  V  T  Y  L  Y  Q  N  Q  *  S  Y  N  V  F  N  V  S  L  S  S  C  *  P  P  D  L  *  A  F  A  A  L  Y  F  N  S  I  P  T  N  F  Y  N  W  K  N  R  Y  F  E  V  H  V  L  H  N  L  M  R  Y  L  S  R  Y  K  L  S  S  L  G  L  S  Q  L  H  F  H  H  F  D  L  Q  L  F  S  N  I  V  K  F  *  E  T  I  C  I  P  L  H  Y  *  N  V  L  P  Y  A  P  S  I  S  Y  F  S  L  N  V  Y  F  N  *  L  R  V  H  V  V  N  *  E  L  *  F  N  L  *  V  N  *  H  N  I  Y  I  S  Q  M  S  L  K  *   </first_frame>
            <second_frame>  M  T  K  C  A  K  V  S  H  S  N  M  F  V  F  S  L  S  V  R  G  L  S  E  L  H  I  C  I  R  I  N  E  V  I  M  C  L  M  C  R  F  L  P  V  D  H  L  I  Y  K  P  L  Q  L  Y  I  L  I  Q  F  Q  Q  T  S  T  I  G  R  I  G  I  L  K  C  M  S  C  I  I  *  C  D  I  *  A  D  I  S  C  H  L  S  D  S  R  N  F  I  S  T  I  L  T  F  S  C  L  V  I  *  *  S  S  E  R  Q  F  V  F  L  Y  I  T  R  M  F  F  H  M  P  P  L  F  H  I  F  L  S  M  C  T  S  T  N  L  G  F  M  W  L  I  K  N  Y  S  S  I  C  R  L  I  S  T  I  Y  T  *  A  K  *  A  *  N  N  </second_frame>
            <third_frame>   *  P  S  A  Q  R  C  H  I  L  T  C  L  C  S  P  F  Q  L  G  G  F  Q  S  Y  I  S  V  S  E  S  M  K  L  *  C  V  *  C  V  A  F  F  L  L  T  T  *  F  I  S  L  C  S  F  I  F  *  F  N  S  N  K  L  L  Q  L  E  E  S  V  F  *  S  A  C  L  A  *  F  N  A  I  F  E  Q  I  *  V  V  I  S  R  T  L  A  T  S  F  P  P  F  *  P  S  A  V  *  *  Y  S  K  V  L  R  D  N  L  Y  S  S  T  L  L  E  C  S  S  I  C  P  L  Y  F  I  F  F  S  Q  C  V  L  Q  L  T  *  G  S  C  G  *  L  R  I  I  V  Q  F  V  G  *  L  A  Q  Y  I  H  K  P  N  E  L  K  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2177" stop="2419"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTKCAKVSHSNMFVFSLSVRGLSELHICIRINEVIMCLMCRFLPVDHLIYKPLQLYILIQFQQTSTIGRIGILKCMSCII*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7645" PGL_stop="11181"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7645" e_stop="7999"/>
            <exon e_start="9053" e_stop="9211"/>
            <exon e_start="10280" e_stop="10361"/>
            <exon e_start="10775" e_stop="11181"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.992"/>
          <exon-intron don_prob="0.559" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="7645" e_stop="7999" e_length="355"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9053" e_stop="9211" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.559" acc_prob="0.987">
            <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10280" e_stop="10361" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="10775" e_stop="11181" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7645" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10361"/>
              <exon start="10775" stop="11181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGAGGGTTTAGCAAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG : AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG : AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG : GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCCAGGGACAAGGCTAGGTGGCTGGGAGCAGGTGTAACAAACACTTCTCCAATTGGAAATCTTCTTCTCCAAAGAAACCATAGGTTGACATTGGTTTGCAATAGAAGTTTTTTCAAACATACTTTGAATCTACACATCCTTCCATGGAATATCATCTCTAAATCATCTTCAGTTACCTAAACATATCTGAAAGAGTACAAAATATTACTATGATTTTATAGTTGTATCTTGTATGTATTCTGGTTTCGCTTGAGTTACTTGTTTCTTTCTATAGGAACCATTTAAGGTCCTGGAA</gDNA_template>
            <first_frame> S  R  V  *  Q  T  L  H  F  L  H  *  N  G  D  S  E  R  H  R  T  A  R  R  R  S  A  G  R  R  R  *  Y  S  D  V  K  L  S  R  S  R  S  T  E  G  V  P  C  *  A  E  P  S  S  *  G  S  F  V  S  C  G  G  G  *  R  G  A  G  I  G  G  L  A  A  K  P  V  L  V  *  P  *  N  S  *  N  C  R  *  *  S  P  *  S  L  S  I  D  *  F  A  G  D  C  L  H  C  L  S  H  T  L  C  L  S  Q   : E  N  *  P  *  C  T  C  T  N  S  R  V  *  Q  T  V  *  T  V  W  K  *  V  H  I  L  R  L  Q  P  T  R  R  S  S  F  F  N  E  T  L  I  S  N  N  C  C  R  S  S  L  P   : E  S  G  M  L  R  E  S  C  *  N  N  F  F  S  H  E  T  R  T  S  L  L  A  F  T  H  R :   *  S  A  K  W  *  G  F  R  A  L  G  F  T  S  M  R  F  *  A  R  S  L  Q  Q  T  R  Q  *  I  S  T  V  Y  K  L  *  P  R  D  K  A  R  W  L  G  A  G  V  T  N  T  S  P  I  G  N  L  L  L  Q  R  N  H  R  L  T  L  V  C  N  R  S  F  F  K  H  T  L  N  L  H  I  L  P  W  N  I  I  S  K  S  S  S  V  T  *  T  Y  L  K  E  Y  K  I  L  L  *  F  Y  S  C  I  L  Y  V  F  W  F  R  L  S  Y  L  F  L  S  I  G  T  I  *  G  P  G  </first_frame>
            <second_frame>  R  G  F  S  K  H  Y  T  F  Y  T  K  M  E  T  A  R  D  T  V  Q  H  D  A  V  L  P  A  G  D  D  D  T  P  T  L  S  S  H  A  L  E  A  L  K  E  F  L  A  E  Q  S  R  A  V  E  E  A  S  S  A  A  A  E  D  D  V  A  L  V  S  E  D  W  R  L  S  Q  F  W  Y  N  R  E  T  A  E  T  V  A  N  E  V  L  N  L  C  R  S  I  D  S  P  A  I  A  C  I  A  C  P  T  L  Y  A  Y  L  K  :  K  I  D  P  N  A  P  A  Q  I  L  E  Y  D  K  R  F  E  Q  Y  G  S  E  F  T  F  Y  D  Y  N  L  P  E  D  L  P  S  S  M  K  H  S  Y  P  I  I  V  A  D  P  P  Y  L  :  S  Q  E  C  L  E  K  V  A  K  T  I  S  F  L  T  R  P  G  Q  A  Y  L  L  L  L  T   : G  E  V  Q  S  G  R  A  S  E  L  L  G  L  R  P  C  A  F  R  P  D  H  S  S  K  L  G  N  E  F  R  L  F  T  N  Y  D  P  G  T  R  L  G  G  W  E  Q  V  *  Q  T  L  L  Q  L  E  I  F  F  S  K  E  T  I  G  *  H  W  F  A  I  E  V  F  S  N  I  L  *  I  Y  T  S  F  H  G  I  S  S  L  N  H  L  Q  L  P  K  H  I  *  K  S  T  K  Y  Y  Y  D  F  I  V  V  S  C  M  Y  S  G  F  A  *  V  T  C  F  F  L  *  E  P  F  K  V  L  E </second_frame>
            <third_frame>   E  G  L  A  N  I  T  L  F  T  L  K  W  R  Q  R  E  T  P  Y  S  T  T  P  F  C  R  P  A  T  M  I  L  R  R  *  A  L  T  L  *  K  H  *  R  S  S  L  L  S  R  A  E  Q  L  R  K  L  R  Q  L  R  R  R  M  T  W  R  W  Y  R  R  I  G  G  *  A  S  S  G  I  T  V  K  Q  L  K  L  S  L  M  K  S  L  I  S  V  D  R  L  I  R  R  R  L  P  A  L  L  V  P  H  F  M  L  I  S  R :   K  L  T  L  M  H  L  H  K  F  S  S  M  T  N  G  L  N  S  M  E  V  S  S  H  S  T  T  T  T  Y  Q  K  I  F  L  L  Q  *  N  T  H  I  Q  *  L  L  Q  I  L  L  T  * :   V  R  N  A  *  R  K  L  L  K  Q  F  L  F  S  R  D  Q  D  K  P  T  C  F  Y  S  Q  :  V  K  C  K  V  V  G  L  P  S  S  W  V  Y  V  H  A  L  L  G  Q  I  T  P  A  N  *  A  M  N  F  D  C  L  Q  T  M  T  Q  G  Q  G  *  V  A  G  S  R  C  N  K  H  F  S  N  W  K  S  S  S  P  K  K  P  *  V  D  I  G  L  Q  *  K  F  F  Q  T  Y  F  E  S  T  H  P  S  M  E  Y  H  L  *  I  I  F  S  Y  L  N  I  S  E  R  V  Q  N  I  T  M  I  L  *  L  Y  L  V  C  I  L  V  S  L  E  L  L  V  S  F  Y  R  N  H  L  R  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7646" stop="7999"/>
                    <exon start="9053" stop="9211"/>
                    <exon start="10280" stop="10361"/>
                    <exon start="10775" stop="10923"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>741</number_coding_nucleotides>
                  <number_encoded_amino_acids>247</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RGFSKHYTFYTKMETARDTVQHDAVLPAGDDDTPTLSSHALEALKEFLAEQSRAVEEASSAAAEDDVALVSEDWRLSQFWYNRETAETVANEVLNLCRSIDSPAIACIACPTLYAYLKKIDPNAPAQILEYDKRFEQYGSEFTFYDYNLPEDLPSSMKHSYPIIVADPPYLSQECLEKVAKTISFLTRPGQAYLLLLTGEVQSGRASELLGLRPCAFRPDHSSKLGNEFRLFTNYDPGTRLGGWEQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="13949" PGL_stop="17376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13949" e_stop="14019"/>
            <exon e_start="15380" e_stop="15545"/>
            <exon e_start="16369" e_stop="16672"/>
            <exon e_start="16928" e_stop="16960"/>
            <exon e_start="17053" e_stop="17144"/>
            <exon e_start="17305" e_stop="17376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.444" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.837" acc_prob="0.966" e_score="0.978"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13949" e_stop="14019" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15380" e_stop="15545" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16369" e_stop="16672" e_length="304"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16928" e_stop="16960" e_length="33"/>
          </exon>
          <intron i_serial="4" don_prob="0.444" acc_prob="0.968">
            <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="17053" e_stop="17144" e_length="92"/>
          </exon>
          <intron i_serial="5" don_prob="0.837" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17305" e_stop="17376" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13949" stop="14019"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17144"/>
              <exon start="17305" stop="17376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571733" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTGGAAATCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG : GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG : TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG : TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG : GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTGGATTTGCAT : ATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGC</gDNA_template>
            <first_frame> K  L  E  I  S  E  E  E  E  E  E  K  T  Q  R  K  *  D  Q  I  L  F  L  R :   R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  :  F  T  G  F  S  P  Q  F  C  F  M  V  L  Y  C  M  F  C  L  I  C  *  L  W  S  L  W  V  Q  S  W  R  G  L  W  D  Q  C  A  C  Y  I  *  L  F  C  W  P  L  A  M  P  Y  S  I  F  L  *  H  C  W  L  P  I  I  P  F  I  L  I  H  T  L  W  T  S  V  L  *  V  S  Q  G  S  Y  F  Q  *  L  *  W  R  Q  V  S  V  G  P  K  L  E   : V  C  L  G  F  L  M  C  Q  L  N   : G  M  H  *  S  Y  W  W  F  F  S  L  L  *  L  M  S  L  Y  L  D  I  F  V  V  F  C  L  D  L  H  :  I  H  M  D  C  S  M  S  *  Y  L  G  H  L  S  S  R  L  L  N  L  P  L  G </first_frame>
            <second_frame>  N  W  K  S  L  K  K  K  K  K  K  K  L  S  E  N  E  T  K  Y  C  F  *   : G  G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  S :   L  Q  D  F  H  L  N  S  V  S  W  F  S  T  A  C  S  V  *  Y  V  S  F  G  P  F  G  F  R  A  G  E  D  Y  G  I  S  A  P  V  I  Y  N  C  S  V  G  H  *  Q  C  L  T  P  S  S  Y  S  I  V  G  C  P  *  S  P  S  S  L  S  I  L  Y  G  R  V  C  Y  R  F  L  R  D  L  I  F  N  D  C  D  G  D  K  S  Q  W  G  P  N  *  K  :  C  V  W  A  F  *  C  A  S  *  M  :  V  C  I  D  L  T  G  G  F  S  A  C  Y  D  *  C  L  F  T  W  T  S  L  W  Y  F  V  W  I  C  I :   Y  I  W  I  V  Q  C  L  N  T  W  D  I  F  L  L  G  Y  *  I  F  H  L   </second_frame>
            <third_frame>   I  G  N  L  *  R  R  R  R  R  K  N  S  A  K  M  R  P  N  I  V  S  E  :  A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q   : V  Y  R  I  F  T  S  I  L  F  H  G  S  L  L  H  V  L  F  N  M  L  A  L  V  P  L  G  S  E  L  E  R  I  M  G  S  V  R  L  L  Y  I  I  V  L  L  A  I  S  N  A  L  L  H  L  L  I  A  L  L  V  A  H  N  P  L  H  P  Y  P  Y  F  M  D  E  C  A  I  G  F  S  G  I  L  F  S  M  I  V  M  E  T  S  L  S  G  A  Q  T  R  S :   V  F  G  L  F  N  V  P  A  K  W :   Y  A  L  I  L  L  V  V  F  Q  L  V  M  T  N  V  S  L  L  G  H  L  C  G  I  L  S  G  F  A   : Y  T  Y  G  L  F  N  V  L  I  P  G  T  S  F  F  S  A  I  E  S  S  T  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13966" stop="14019"/>
                    <exon start="15380" stop="15545"/>
                    <exon start="16369" stop="16672"/>
                    <exon start="16928" stop="16960"/>
                    <exon start="17053" stop="17144"/>
                    <exon start="17305" stop="17375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>720</number_coding_nucleotides>
                  <number_encoded_amino_acids>240</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRRKNSAKMRPNIVSEAGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQVYRIFTSILFHGSLLHVLFNMLALVPLGSELERIMGSVRLLYIIVLLAISNALLHLLIALLVAHNPLHPYPYFMDECAIGFSGILFSMIVMETSLSGAQTRSVFGLFNVPAKWYALILLVVFQLVMTNVSLLGHLCGILSGFAYTYGLFNVLIPGTSFFSAIESSTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13963" e_stop="14019"/>
            <exon e_start="15380" e_stop="16079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13963" e_stop="14019" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14020" i_stop="15379" i_length="1360"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="15380" e_stop="16079" e_length="700"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13963" stop="14019"/>
              <exon start="15380" stop="16079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589745" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG : GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTC</gDNA_template>
            <first_frame> *  R  R  R  R  R  K  N  S  A  K  M  R  P  N  I  V  S  E  :  A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q  G  R  F  T  Y  S  A  V  F  P  S  L  K  K  Q  G  V  H  I  *  C  C  *  Y  I  K  M  C  L  L  K  R  N  S  A  C  T  Q  I  T  L  F  L  V  E  R  L  I  *  W  N  L  V  N  Y  L  R  I  I  I  H  C  Y  C  L  V  I  I  D  E  L  F  G  G  W  F  H  L  E  C  C  F  S  F  L  K  K  Q  G  L  H  I  *  C  C  S  Y  I  K  M  C  L  H  *  N  C  S  I  L  S  *  K  I  N  L  M  K  L  V  N  D  *  D  N  Y  T  M  L  L  L  S  N  H  *  *  V  V  W  G  G  G  G  S  N  V  A  E  V  V  I  *  V  G  L  L  S  A  Y  Q  L  I  N  F  F  S  C  S  L  S  F  E  D  F  V  T  L  L  F  </first_frame>
            <second_frame>  E  E  E  E  E  E  K  T  Q  R  K  *  D  Q  I  L  F  L  R :   R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  V  G  S  L  I  V  L  F  F  L  P  *  K  N  K  V  Y  I  Y  S  A  A  D  T  L  K  C  A  F  *  K  E  I  L  P  A  L  K  L  L  Y  S  *  W  K  D  *  F  D  G  I  L  S  T  I  *  G  *  L  Y  I  A  I  A  *  *  S  L  M  S  C  L  G  G  G  F  T  *  S  A  V  F  P  S  *  K  N  K  V  C  I  Y  S  A  A  H  T  S  K  C  A  C  T  E  I  A  L  F  L  A  E  R  *  I  *  *  N  L  S  T  I  R  I  I  I  Q  C  Y  C  L  V  I  I  D  E  L  F  G  G  V  G  G  A  M  W  L  R  W  L  F  E  *  D  Y  F  L  P  I  N  *  S  I  S  L  V  V  H  F  L  L  K  T  L  *  P  Y  S  F </second_frame>
            <third_frame>   K  K  K  K  K  K  K  L  S  E  N  E  T  K  Y  C  F  *   : G  G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  R  *  V  H  L  *  C  C  F  S  F  L  K  K  T  R  C  T  Y  I  V  L  L  I  H  *  N  V  P  F  K  K  K  F  C  L  H  S  N  Y  S  I  L  S  G  K  T  N  L  M  E  S  C  Q  L  F  E  D  N  Y  T  L  L  L  L  S  D  H  *  *  V  V  W  G  V  V  S  L  R  V  L  F  F  L  P  K  K  T  R  F  A  Y  I  V  L  L  I  H  Q  N  V  P  A  L  K  L  L  Y  S  *  L  K  D  K  F  D  E  T  C  Q  R  L  G  *  L  Y  N  A  I  A  *  *  S  L  M  S  C  L  G  G  W  G  E  Q  C  G  *  G  G  Y  L  S  R  T  T  F  C  L  S  I  D  Q  F  L  *  L  F  T  F  F  *  R  L  C  N  L  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13966" stop="14019"/>
                    <exon start="15380" stop="15604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRRRRKNSAKMRPNIVSEAGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQGRFTYSAVFPSLKKQGVHI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13959" e_stop="14019"/>
            <exon e_start="15096" e_stop="15184"/>
            <exon e_start="15380" e_stop="15545"/>
            <exon e_start="16369" e_stop="16587"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.669" e_score="0.984"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="13959" e_stop="14019" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.669">
            <gDNA_intron_boundary i_start="14020" i_stop="15095" i_length="1076"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15096" e_stop="15184" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="15185" i_stop="15379" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15380" e_stop="15545" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="16369" e_stop="16587" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13959" stop="14019"/>
              <exon start="15096" stop="15184"/>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589744" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGAAGAAGAAGAAGAAGAAAAAACTCAGCGAAAATGAGACCAAATATTGTTTCTGAG : GTAGGACATGTGTGGCTTCTTGTTCAATTTTATACAAGATTATATGTGCACTCCCAAAGTTGGACGGCGTAGTTGTTCGCTAAAGCCAA : GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG : TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTA</gDNA_template>
            <first_frame> S  L  K  K  K  K  K  K  K  L  S  E  N  E  T  K  Y  C  F  *   : G  R  T  C  V  A  S  C  S  I  L  Y  K  I  I  C  A  L  P  K  L  D  G  V  V  V  R  *  S  Q  :  A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q   : V  Y  R  I  F  T  S  I  L  F  H  G  S  L  L  H  V  L  F  N  M  L  A  L  V  P  L  G  S  E  L  E  R  I  M  G  S  V  R  L  L  Y  I  I  V  L  L  A  I  S  N  A  L  L  H  L  L  I  A  L  L  V  A  H  N  P  L  H  P  Y  P  Y  F  </first_frame>
            <second_frame>  L  *  R  R  R  R  R  K  N  S  A  K  M  R  P  N  I  V  S  E  :  V  G  H  V  W  L  L  V  Q  F  Y  T  R  L  Y  V  H  S  Q  S  W  T  A  *  L  F  A  K  A  K :   R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  :  F  T  G  F  S  P  Q  F  C  F  M  V  L  Y  C  M  F  C  L  I  C  *  L  W  S  L  W  V  Q  S  W  R  G  L  W  D  Q  C  A  C  Y  I  *  L  F  C  W  P  L  A  M  P  Y  S  I  F  L  *  H  C  W  L  P  I  I  P  F  I  L  I  H  T  L </second_frame>
            <third_frame>   S  E  E  E  E  E  E  K  T  Q  R  K  *  D  Q  I  L  F  L  R :   *  D  M  C  G  F  L  F  N  F  I  Q  D  Y  M  C  T  P  K  V  G  R  R  S  C  S  L  K  P   : S  G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  S :   L  Q  D  F  H  L  N  S  V  S  W  F  S  T  A  C  S  V  *  Y  V  S  F  G  P  F  G  F  R  A  G  E  D  Y  G  I  S  A  P  V  I  Y  N  C  S  V  G  H  *  Q  C  L  T  P  S  S  Y  S  I  V  G  C  P  *  S  P  S  S  L  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15179" stop="15184"/>
                    <exon start="15380" stop="15545"/>
                    <exon start="16369" stop="16586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQAGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQVYRIFTSILFHGSLLHVLFNMLALVPLGSELERIMGSVRLLYIIVLLAISNALLHLLIALLVAHNPLHPYPYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="18171" PGL_stop="21591"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18171" e_stop="18244"/>
            <exon e_start="18600" e_stop="19078"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.986"/>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="18171" e_stop="18244" e_length="74"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="18600" e_stop="19078" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18171" stop="18244"/>
              <exon start="18600" stop="19078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594967" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGTGCTTTCTGGAAATATTTGGGAGAACCTTTCTTCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG : CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAGGTGCTAGAAACAGACTGTTGTTACATGCTAAATTGTTAATACTCATATATCTGTTCTGTATTTGACTATCATTGGTTGGTGCACTAAGATAGATCCGTTTTAGTTATATTTTCATGTGATGCTGAAACTGCTCTCCGATTGAACGGTTTGCTGTAAACAAGGTGTTTAAATTGGTTGATCCAGTAACCAAGTTTAAGTTATATCGCTACGGAAAGGAAAAGCTGGATTTTCTTCAATCCGTTCATAAAATACAATTCCTATGATTTTTTTTTCTCTGTATAGTTTCTTCTGGATAATCTGATTTCTATC</gDNA_template>
            <first_frame> K  C  F  L  E  I  F  G  R  T  F  L  R  G  C  H  R  E  R  A  L  S  L  L  S :   R  *  Q  M  I  A  G  F  L  G  E  E  E  L  *  V  P  R  P  P  P  L  I  M  I  Q  R  Y  R  L  G  S  W  M  V  A  A  A  L  S  V  V  H  L  L  L  Q  *  L  E  S  G  A  *  L  E  G  A  R  N  R  L  L  L  H  A  K  L  L  I  L  I  Y  L  F  C  I  *  L  S  L  V  G  A  L  R  *  I  R  F  S  Y  I  F  M  *  C  *  N  C  S  P  I  E  R  F  A  V  N  K  V  F  K  L  V  D  P  V  T  K  F  K  L  Y  R  Y  G  K  E  K  L  D  F  L  Q  S  V  H  K  I  Q  F  L  *  F  F  F  L  C  I  V  S  S  G  *  S  D  F  Y  </first_frame>
            <second_frame>  S  A  F  W  K  Y  L  G  E  P  F  F  V  D  A  T  E  R  E  L  S  L  C  S   : A  G  D  R  *  *  Q  V  S  W  E  R  K  N  S  E  F  P  D  H  H  H  *  S  *  F  N  V  T  G  *  A  P  G  W  *  Q  Q  P  *  A  *  F  T  Y  C  Y  N  S  W  R  A  E  L  S  W  K  V  L  E  T  D  C  C  Y  M  L  N  C  *  Y  S  Y  I  C  S  V  F  D  Y  H  W  L  V  H  *  D  R  S  V  L  V  I  F  S  C  D  A  E  T  A  L  R  L  N  G  L  L  *  T  R  C  L  N  W  L  I  Q  *  P  S  L  S  Y  I  A  T  E  R  K  S  W  I  F  F  N  P  F  I  K  Y  N  S  Y  D  F  F  F  S  V  *  F  L  L  D  N  L  I  S  I </second_frame>
            <third_frame>   V  L  S  G  N  I  W  E  N  L  S  S  W  M  P  Q  R  E  S  S  L  S  A  Q  :  P  V  T  D  D  S  R  F  P  G  R  G  R  T  L  S  S  Q  T  T  T  T  N  H  D  S  T  L  Q  A  R  L  L  D  G  S  S  S  P  E  R  S  S  P  T  A  T  I  A  G  E  R  S  L  A  G  R  C  *  K  Q  T  V  V  T  C  *  I  V  N  T  H  I  S  V  L  Y  L  T  I  I  G  W  C  T  K  I  D  P  F  *  L  Y  F  H  V  M  L  K  L  L  S  D  *  T  V  C  C  K  Q  G  V  *  I  G  *  S  S  N  Q  V  *  V  I  S  L  R  K  G  K  A  G  F  S  S  I  R  S  *  N  T  I  P  M  I  F  F  S  L  Y  S  F  F  W  I  I  *  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18173" stop="18244"/>
                    <exon start="18600" stop="18776"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLSGNIWENLSSWMPQRESSLSAQPVTDDSRFPGRGRTLSSQTTTTNHDSTLQARLLDGSSSPERSSPTATIAGERSLAGRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="18206" e_stop="18244"/>
            <exon e_start="18600" e_stop="18769"/>
            <exon e_start="19239" e_stop="19290"/>
            <exon e_start="19369" e_stop="19425"/>
            <exon e_start="19551" e_stop="19625"/>
            <exon e_start="19709" e_stop="19971"/>
            <exon e_start="20072" e_stop="20110"/>
            <exon e_start="20817" e_stop="20839"/>
            <exon e_start="21064" e_stop="21074"/>
            <exon e_start="21443" e_stop="21591"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.937" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.698" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.615"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.783"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.909"/>
          <exon-only e_score="0.523"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18206" e_stop="18244" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18245" i_stop="18599" i_length="355"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18600" e_stop="18769" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.981">
            <gDNA_intron_boundary i_start="18770" i_stop="19238" i_length="469"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19239" e_stop="19290" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="19291" i_stop="19368" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19369" e_stop="19425" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="19426" i_stop="19550" i_length="125"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19551" e_stop="19625" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.937" acc_prob="0.899">
            <gDNA_intron_boundary i_start="19626" i_stop="19708" i_length="83"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="19709" e_stop="19971" e_length="263"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.698">
            <gDNA_intron_boundary i_start="19972" i_stop="20071" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="0.615">
            <gDNA_exon_boundary e_start="20072" e_stop="20110" e_length="39"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20111" i_stop="20816" i_length="706"/>
          </intron>
          <exon e_serial="8" e_score="0.783">
            <gDNA_exon_boundary e_start="20817" e_stop="20839" e_length="23"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20840" i_stop="21063" i_length="224"/>
          </intron>
          <exon e_serial="9" e_score="0.909">
            <gDNA_exon_boundary e_start="21064" e_stop="21074" e_length="11"/>
          </exon>
          <intron i_serial="9" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21075" i_stop="21442" i_length="368"/>
          </intron>
          <exon e_serial="10" e_score="0.523">
            <gDNA_exon_boundary e_start="21443" e_stop="21591" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18206" stop="18244"/>
              <exon start="18600" stop="18769"/>
              <exon start="19239" stop="19290"/>
              <exon start="19369" stop="19425"/>
              <exon start="19551" stop="19625"/>
              <exon start="19709" stop="19971"/>
              <exon start="20072" stop="20110"/>
              <exon start="20817" stop="20839"/>
              <exon start="21064" stop="21074"/>
              <exon start="21443" stop="21591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582721" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTGGATGCCACAGAGAGAGAGCTCTCTCTCTGCTCAG : CCGGTGACAGATGATAGCAGGTTTCCTGGGAGAGGAAGAACTCTGAGTTCCCAGACCACCACCACTAATCATGATTCAACGTTACAGGCTAGGCTCCTGGATGGTAGCAGCAGCCCTGAGCGTAGTTCACCTACTGCTACAATAGCTGGAGAGCGGAGCTTAGCTGGAAG : ACTATCAGCAGTTGATACTACCACCACAGCTACAAGACCGCTAGGACAGCAG : GCTTCCATTCCCTCAGATGAAGAAGTTCAGAAACTTGTTGCAATGGGTTTTGAGAAG : ACACAAGTAGAAGTTGCACTGGCTGCAGCCGAAGGGGACTTGAATGTTGCTGTGGAAATTTTAATGAGCCAACAG : GGTTAATATGAAAGGATATAACATCAAGATTTGACTCAAAAAGCCGAGGCTCTGCAAAACTAGTAATCTAATTCCTCGAGCCCTCGTTGTTTTCCTCTTCTTTTTGGTTGTATATAATCTTACAGCAAATTTACACAATTCTTAGAGAGATGGAAGACCTTCTTAGTGTGTGATTTACGCCTAATCCCCATAAAACAGAGATGAATTGTATATCTACCTTCATGATTTTAGATGCTGCAATATCAATGAATCATTTTATATTT : ACTAAAAACACTGCTAAATGAGCCCTCGGGGTTTTGGTT : TTCTTTTTGTTTTTTTATTTAGC : AAAAAGAAAAA : ATTGAGTTTTTTTTTAGGAGATTGACAAGTTAATATATATATATATATATTGATTTTTTTAATAAATCCACAGAAAAAACAACGAAATTCATTTATACCCACGAACACCCACTTAGTTCTTTATCCTGGGACCTCTTTATCCTGGGACC</gDNA_template>
            <first_frame> S  W  M  P  Q  R  E  S  S  L  S  A  Q  :  P  V  T  D  D  S  R  F  P  G  R  G  R  T  L  S  S  Q  T  T  T  T  N  H  D  S  T  L  Q  A  R  L  L  D  G  S  S  S  P  E  R  S  S  P  T  A  T  I  A  G  E  R  S  L  A  G  R :   L  S  A  V  D  T  T  T  T  A  T  R  P  L  G  Q  Q  :  A  S  I  P  S  D  E  E  V  Q  K  L  V  A  M  G  F  E  K  :  T  Q  V  E  V  A  L  A  A  A  E  G  D  L  N  V  A  V  E  I  L  M  S  Q  Q  :  G  *  Y  E  R  I  *  H  Q  D  L  T  Q  K  A  E  A  L  Q  N  *  *  S  N  S  S  S  P  R  C  F  P  L  L  F  G  C  I  *  S  Y  S  K  F  T  Q  F  L  E  R  W  K  T  F  L  V  C  D  L  R  L  I  P  I  K  Q  R  *  I  V  Y  L  P  S  *  F  *  M  L  Q  Y  Q  *  I  I  L  Y  L :   L  K  T  L  L  N  E  P  S  G  F  W  F :   S  F  C  F  F  I  *   : Q  K  E  K  :  I  E  F  F  F  R  R  L  T  S  *  Y  I  Y  I  Y  I  D  F  F  N  K  S  T  E  K  T  T  K  F  I  Y  T  H  E  H  P  L  S  S  L  S  W  D  L  F  I  L  G   </first_frame>
            <second_frame>  R  G  C  H  R  E  R  A  L  S  L  L  S :   R  *  Q  M  I  A  G  F  L  G  E  E  E  L  *  V  P  R  P  P  P  L  I  M  I  Q  R  Y  R  L  G  S  W  M  V  A  A  A  L  S  V  V  H  L  L  L  Q  *  L  E  S  G  A  *  L  E   : D  Y  Q  Q  L  I  L  P  P  Q  L  Q  D  R  *  D  S  R :   L  P  F  P  Q  M  K  K  F  R  N  L  L  Q  W  V  L  R  R :   H  K  *  K  L  H  W  L  Q  P  K  G  T  *  M  L  L  W  K  F  *  *  A  N  R :   V  N  M  K  G  Y  N  I  K  I  *  L  K  K  P  R  L  C  K  T  S  N  L  I  P  R  A  L  V  V  F  L  F  F  L  V  V  Y  N  L  T  A  N  L  H  N  S  *  R  D  G  R  P  S  *  C  V  I  Y  A  *  S  P  *  N  R  D  E  L  Y  I  Y  L  H  D  F  R  C  C  N  I  N  E  S  F  Y  I   : Y  *  K  H  C  *  M  S  P  R  G  F  G   : F  L  F  V  F  L  F  S  :  K  K  K  K :   L  S  F  F  L  G  D  *  Q  V  N  I  Y  I  Y  I  L  I  F  L  I  N  P  Q  K  K  Q  R  N  S  F  I  P  T  N  T  H  L  V  L  Y  P  G  T  S  L  S  W  D  </second_frame>
            <third_frame>   V  D  A  T  E  R  E  L  S  L  C  S   : A  G  D  R  *  *  Q  V  S  W  E  R  K  N  S  E  F  P  D  H  H  H  *  S  *  F  N  V  T  G  *  A  P  G  W  *  Q  Q  P  *  A  *  F  T  Y  C  Y  N  S  W  R  A  E  L  S  W  K  :  T  I  S  S  *  Y  Y  H  H  S  Y  K  T  A  R  T  A   : G  F  H  S  L  R  *  R  S  S  E  T  C  C  N  G  F  *  E   : D  T  S  R  S  C  T  G  C  S  R  R  G  L  E  C  C  C  G  N  F  N  E  P  T   : G  L  I  *  K  D  I  T  S  R  F  D  S  K  S  R  G  S  A  K  L  V  I  *  F  L  E  P  S  L  F  S  S  S  F  W  L  Y  I  I  L  Q  Q  I  Y  T  I  L  R  E  M  E  D  L  L  S  V  *  F  T  P  N  P  H  K  T  E  M  N  C  I  S  T  F  M  I  L  D  A  A  I  S  M  N  H  F  I  F  :  T  K  N  T  A  K  *  A  L  G  V  L  V  :  F  F  L  F  F  Y  L  A :   K  R  K   : N  *  V  F  F  *  E  I  D  K  L  I  Y  I  Y  I  Y  *  F  F  *  *  I  H  R  K  N  N  E  I  H  L  Y  P  R  T  P  T  *  F  F  I  L  G  P  L  Y  P  G  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18206" stop="18244"/>
                    <exon start="18600" stop="18769"/>
                    <exon start="19239" stop="19290"/>
                    <exon start="19369" stop="19425"/>
                    <exon start="19551" stop="19625"/>
                    <exon start="19709" stop="19714"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SWMPQRESSLSAQPVTDDSRFPGRGRTLSSQTTTTNHDSTLQARLLDGSSSPERSSPTATIAGERSLAGRLSAVDTTTTATRPLGQQASIPSDEEVQKLVAMGFEKTQVEVALAAAEGDLNVAVEILMSQQG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="32224" PGL_stop="21884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32224" e_stop="32183"/>
            <exon e_start="29275" e_stop="29198"/>
            <exon e_start="29095" e_stop="29007"/>
            <exon e_start="28917" e_stop="28809"/>
            <exon e_start="28709" e_stop="28641"/>
            <exon e_start="28551" e_stop="28441"/>
            <exon e_start="26066" e_stop="26011"/>
            <exon e_start="25918" e_stop="25741"/>
            <exon e_start="25617" e_stop="25516"/>
            <exon e_start="25433" e_stop="25362"/>
            <exon e_start="24485" e_stop="24420"/>
            <exon e_start="24161" e_stop="24096"/>
            <exon e_start="23779" e_stop="23693"/>
            <exon e_start="23608" e_stop="23492"/>
            <exon e_start="23365" e_stop="23291"/>
            <exon e_start="23161" e_stop="23078"/>
            <exon e_start="22539" e_stop="21884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.902" acc_prob="1.000" e_score="0.962"/>
          <exon-intron don_prob="0.965" acc_prob="0.985" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.864" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.956" e_score="1.000"/>
          <exon-intron don_prob="0.069" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.318" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.788" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.757" acc_prob="0.311" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="32224" e_stop="32183" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="32182" i_stop="29276" i_length="2907"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="29275" e_stop="29198" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29197" i_stop="29096" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="29095" e_stop="29007" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.985">
            <gDNA_intron_boundary i_start="29006" i_stop="28918" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="28917" e_stop="28809" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="28808" i_stop="28710" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28709" e_stop="28641" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.952" acc_prob="0.864">
            <gDNA_intron_boundary i_start="28640" i_stop="28552" i_length="89"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="28551" e_stop="28441" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.930" acc_prob="0.956">
            <gDNA_intron_boundary i_start="28440" i_stop="26067" i_length="2374"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26066" e_stop="26011" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="0.069" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26010" i_stop="25919" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="25918" e_stop="25741" e_length="178"/>
          </exon>
          <intron i_serial="8" don_prob="0.901" acc_prob="0.937">
            <gDNA_intron_boundary i_start="25740" i_stop="25618" i_length="123"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="25617" e_stop="25516" e_length="102"/>
          </exon>
          <intron i_serial="9" don_prob="0.318" acc_prob="0.983">
            <gDNA_intron_boundary i_start="25515" i_stop="25434" i_length="82"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="25433" e_stop="25362" e_length="72"/>
          </exon>
          <intron i_serial="10" don_prob="0.995" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25361" i_stop="24486" i_length="876"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="24485" e_stop="24420" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.996" acc_prob="0.970">
            <gDNA_intron_boundary i_start="24419" i_stop="24162" i_length="258"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="24161" e_stop="24096" e_length="66"/>
          </exon>
          <intron i_serial="12" don_prob="0.936" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24095" i_stop="23780" i_length="316"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="23779" e_stop="23693" e_length="87"/>
          </exon>
          <intron i_serial="13" don_prob="0.788" acc_prob="0.653">
            <gDNA_intron_boundary i_start="23692" i_stop="23609" i_length="84"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="23608" e_stop="23492" e_length="117"/>
          </exon>
          <intron i_serial="14" don_prob="0.757" acc_prob="0.311">
            <gDNA_intron_boundary i_start="23491" i_stop="23366" i_length="126"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="23365" e_stop="23291" e_length="75"/>
          </exon>
          <intron i_serial="15" don_prob="0.844" acc_prob="0.927">
            <gDNA_intron_boundary i_start="23290" i_stop="23162" i_length="129"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="23161" e_stop="23078" e_length="84"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="23077" i_stop="22540" i_length="538"/>
          </intron>
          <exon e_serial="17" e_score="0.997">
            <gDNA_exon_boundary e_start="22539" e_stop="21884" e_length="656"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32224" stop="32183"/>
              <exon start="29275" stop="29198"/>
              <exon start="29095" stop="29007"/>
              <exon start="28917" stop="28809"/>
              <exon start="28709" stop="28641"/>
              <exon start="28551" stop="28441"/>
              <exon start="26066" stop="26011"/>
              <exon start="25918" stop="25875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28852" stop="28809"/>
              <exon start="28709" stop="28641"/>
              <exon start="28551" stop="28441"/>
              <exon start="26066" stop="26011"/>
              <exon start="25918" stop="25741"/>
              <exon start="25617" stop="25516"/>
              <exon start="25433" stop="25362"/>
              <exon start="24485" stop="24420"/>
              <exon start="24161" stop="24096"/>
              <exon start="23779" stop="23693"/>
              <exon start="23608" stop="23492"/>
              <exon start="23365" stop="23291"/>
              <exon start="23161" stop="23078"/>
              <exon start="22539" stop="21884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCCCAATCGCCCATTAACTCCGCATGAGGAACTACAAACA : GTTTGTCAGTTAAGGGAAGTTTCTAACAAGAACAACAACGCTGAGTTAAAATTATTTTTGGAAGTGGACTATGGCCTG : GATTTCATTCCTGGTCCTCCACCTGACAAAAGCAAGGATGATATACTCCTTTTCTTTAAGCTTTATGATCCTGAGAAAGAAGAGCTCCG : TTATGTTGGTAGGCTTTTCGTGAAGAGTACTAGTAAGCCAGTTGAGATACTTCCAAAACTTAATGAATTGGCTGGATTTGCTCCTGACCAAGAAATTGAACTTTTTGAG : GAAATAAAGTTTGAACCTTCTGTCATGTGTGAAAGACTAGACAGAAAGGCTTCATTTCGATTTAGCCAG : ATTGAAGATGGGGATATTATATGCTTTCAGAAGAAAACTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCAGATGTTCCTTCATATATGGAGTATGTCAAAAATCGCCAG : CTTGTCCACTTCAGAGCACTGGAAAAACCGAAGGAGGATGATTTTTGTCTGGAGTT : AGCAAAAAGTGATACATATGATGAAGTAGTGGATAGAGTGGCTCAGAGGCTTGGTGTGGATGATTCCTCCAAAATTAGGCTTACTCCTCACAACTGCTACTCACAGCAACCCAAGCCCAACCCCATCAAATATCGGTCTGTGGATCATTTGGTAGACATGCTTATCCATTACAATCAG : ATCTCCGATATTCTGTATTATGAAGTTCTGGACATACCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCCTTCCATCATTCTACGAAGGATGAG : ATTGAAATTCTGAATGTAAGATTGCCTAAGCAGAGTACAGTGGGGGATGTACTTGAGGAAATCAAATCAAAG : GTAGAGTTGTCCCATCCAAATGCAGAGCTCAGATTACTCGAGGTCTTCTATCACAAGATTTATAAG : ATCTTTCCGCTCAGTGAAAAGATTGAGAATATAAATGACCAATATTGGACATTGCGGGCAGAGGAA : ATACCAGAAGAGGAGAAAAACCTTGGTCCCCACGATCGTCTAATTCATGTTTACCATTTCACAAAAGAGACTCCACAAAATCAAATG : CAAGTGCAGAATTTTGGAGAACCTTTCTTTCTGGTCATCCATGAAGGTGAAACTTTAGCGGAAATTAAAGTGCGGATTCAAAAGAAATTGCAGGTCTCGGATGAGGAGTTCTCTAAG : TGGAAATTTGCATTTTTATCATTGGGGCGCCCAGAATACCTTCAGGACTCAGATATTGTATCCAACCGTTTTCAG : AGGAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGATTGGAGCATGCAGATAATACATCTAAGAGGCCATATATTAATCAG : AACCGTCACACATTCGAAAAGCCAGTCAAGATATACAACTGAAAGAGGCTTGTGATATTTCAGCTGGGTTTTGGTTGTAGCGTTCACTCCTCACGAGCTTAGAAGGGAGAAATGTAAAAGAGTTTGTAGCTATGACATGATGATAAGTAGAAGGCAGAGAGGGGATTGGCATGAAAACCGTTTTCATTTAGGGGATTTCACCACCTTTGTCTCCTCCTGATGATTTGGTCAGATTTTGCAGGCTTTATGTTTTCCCTTCGATTTCGTTTGGGGAGGGAGATTTGTTTCTCTTTAGTTTAGTTAGGATGTGCGCTGCAGTTTCTGCCCTCGCCTTCAGCTATTACACCGCTGAGGGTTGGTTCTTTTGATGTTGTCTTCTGCATAGTTTATTCTGCATATAAGATTTTGGTTGAAGGGAATGTATAGCTGATATAGTCGTCGGGTGCCTTCTGGGCATGTACCATCTATCTGTTACTTCTGTATGAATTTCCCCATTCCTCTTTTTGTTGTATTTAATGTCATAGGAGTGGGGAATGGATCTGTATAAGTTTTCTCTATAGCATTGGTATATGTTTTCTATGCTTCATTTCTGTCTTTGTTGTTGTTACTGTTGGTTTAGTTTGGCAGGAAATGACAAAAACCTCCTTCAATTGAGC</gDNA_template>
            <first_frame> R  P  N  R  P  L  T  P  H  E  E  L  Q  T  :  V  C  Q  L  R  E  V  S  N  K  N  N  N  A  E  L  K  L  F  L  E  V  D  Y  G  L  :  D  F  I  P  G  P  P  P  D  K  S  K  D  D  I  L  L  F  F  K  L  Y  D  P  E  K  E  E  L  R :   Y  V  G  R  L  F  V  K  S  T  S  K  P  V  E  I  L  P  K  L  N  E  L  A  G  F  A  P  D  Q  E  I  E  L  F  E  :  E  I  K  F  E  P  S  V  M  C  E  R  L  D  R  K  A  S  F  R  F  S  Q  :  I  E  D  G  D  I  I  C  F  Q  K  K  T  S  P  E  V  E  E  Q  V  R  F  P  D  V  P  S  Y  M  E  Y  V  K  N  R  Q  :  L  V  H  F  R  A  L  E  K  P  K  E  D  D  F  C  L  E  L :   A  K  S  D  T  Y  D  E  V  V  D  R  V  A  Q  R  L  G  V  D  D  S  S  K  I  R  L  T  P  H  N  C  Y  S  Q  Q  P  K  P  N  P  I  K  Y  R  S  V  D  H  L  V  D  M  L  I  H  Y  N  Q  :  I  S  D  I  L  Y  Y  E  V  L  D  I  P  L  P  E  L  Q  C  L  K  T  L  K  V  A  F  H  H  S  T  K  D  E  :  I  E  I  L  N  V  R  L  P  K  Q  S  T  V  G  D  V  L  E  E  I  K  S  K  :  V  E  L  S  H  P  N  A  E  L  R  L  L  E  V  F  Y  H  K  I  Y  K  :  I  F  P  L  S  E  K  I  E  N  I  N  D  Q  Y  W  T  L  R  A  E  E  :  I  P  E  E  E  K  N  L  G  P  H  D  R  L  I  H  V  Y  H  F  T  K  E  T  P  Q  N  Q  M  :  Q  V  Q  N  F  G  E  P  F  F  L  V  I  H  E  G  E  T  L  A  E  I  K  V  R  I  Q  K  K  L  Q  V  S  D  E  E  F  S  K  :  W  K  F  A  F  L  S  L  G  R  P  E  Y  L  Q  D  S  D  I  V  S  N  R  F  Q  :  R  R  D  V  Y  G  A  W  E  Q  Y  L  G  L  E  H  A  D  N  T  S  K  R  P  Y  I  N  Q  :  N  R  H  T  F  E  K  P  V  K  I  Y  N  *  K  R  L  V  I  F  Q  L  G  F  G  C  S  V  H  S  S  R  A  *  K  G  E  M  *  K  S  L  *  L  *  H  D  D  K  *  K  A  E  R  G  L  A  *  K  P  F  S  F  R  G  F  H  H  L  C  L  L  L  M  I  W  S  D  F  A  G  F  M  F  S  L  R  F  R  L  G  R  E  I  C  F  S  L  V  *  L  G  C  A  L  Q  F  L  P  S  P  S  A  I  T  P  L  R  V  G  S  F  D  V  V  F  C  I  V  Y  S  A  Y  K  I  L  V  E  G  N  V  *  L  I  *  S  S  G  A  F  W  A  C  T  I  Y  L  L  L  L  Y  E  F  P  H  S  S  F  C  C  I  *  C  H  R  S  G  E  W  I  C  I  S  F  L  Y  S  I  G  I  C  F  L  C  F  I  S  V  F  V  V  V  T  V  G  L  V  W  Q  E  M  T  K  T  S  F  N  *   </first_frame>
            <second_frame>  G  P  I  A  H  *  L  R  M  R  N  Y  K  Q :   F  V  S  *  G  K  F  L  T  R  T  T  T  L  S  *  N  Y  F  W  K  W  T  M  A  W :   I  S  F  L  V  L  H  L  T  K  A  R  M  I  Y  S  F  S  L  S  F  M  I  L  R  K  K  S  S   : V  M  L  V  G  F  S  *  R  V  L  V  S  Q  L  R  Y  F  Q  N  L  M  N  W  L  D  L  L  L  T  K  K  L  N  F  L  R :   K  *  S  L  N  L  L  S  C  V  K  D  *  T  E  R  L  H  F  D  L  A  R :   L  K  M  G  I  L  Y  A  F  R  R  K  L  L  L  K  L  K  N  K  S  D  F  Q  M  F  L  H  I  W  S  M  S  K  I  A  S :   L  S  T  S  E  H  W  K  N  R  R  R  M  I  F  V  W  S   : *  Q  K  V  I  H  M  M  K  *  W  I  E  W  L  R  G  L  V  W  M  I  P  P  K  L  G  L  L  L  T  T  A  T  H  S  N  P  S  P  T  P  S  N  I  G  L  W  I  I  W  *  T  C  L  S  I  T  I  R :   S  P  I  F  C  I  M  K  F  W  T  Y  L  C  Q  N  Y  N  V  *  R  R  S  K  L  P  S  I  I  L  R  R  M  R :   L  K  F  *  M  *  D  C  L  S  R  V  Q  W  G  M  Y  L  R  K  S  N  Q  R :   *  S  C  P  I  Q  M  Q  S  S  D  Y  S  R  S  S  I  T  R  F  I  R :   S  F  R  S  V  K  R  L  R  I  *  M  T  N  I  G  H  C  G  Q  R  K :   Y  Q  K  R  R  K  T  L  V  P  T  I  V  *  F  M  F  T  I  S  Q  K  R  L  H  K  I  K  C :   K  C  R  I  L  E  N  L  S  F  W  S  S  M  K  V  K  L  *  R  K  L  K  C  G  F  K  R  N  C  R  S  R  M  R  S  S  L  S :   G  N  L  H  F  Y  H  W  G  A  Q  N  T  F  R  T  Q  I  L  Y  P  T  V  F  R :   G  E  M  F  M  V  L  G  S  S  T  L  D  W  S  M  Q  I  I  H  L  R  G  H  I  L  I  R :   T  V  T  H  S  K  S  Q  S  R  Y  T  T  E  R  G  L  *  Y  F  S  W  V  L  V  V  A  F  T  P  H  E  L  R  R  E  K  C  K  R  V  C  S  Y  D  M  M  I  S  R  R  Q  R  G  D  W  H  E  N  R  F  H  L  G  D  F  T  T  F  V  S  S  *  *  F  G  Q  I  L  Q  A  L  C  F  P  F  D  F  V  W  G  G  R  F  V  S  L  *  F  S  *  D  V  R  C  S  F  C  P  R  L  Q  L  L  H  R  *  G  L  V  L  L  M  L  S  S  A  *  F  I  L  H  I  R  F  W  L  K  G  M  Y  S  *  Y  S  R  R  V  P  S  G  H  V  P  S  I  C  Y  F  C  M  N  F  P  I  P  L  F  V  V  F  N  V  I  G  V  G  N  G  S  V  *  V  F  S  I  A  L  V  Y  V  F  Y  A  S  F  L  S  L  L  L  L  L  L  V  *  F  G  R  K  *  Q  K  P  P  S  I  E  </second_frame>
            <third_frame>   A  Q  S  P  I  N  S  A  *  G  T  T  N   : S  L  S  V  K  G  S  F  *  Q  E  Q  Q  R  *  V  K  I  I  F  G  S  G  L  W  P   : G  F  H  S  W  S  S  T  *  Q  K  Q  G  *  Y  T  P  F  L  *  A  L  *  S  *  E  R  R  A  P  :  L  C  W  *  A  F  R  E  E  Y  *  *  A  S  *  D  T  S  K  T  *  *  I  G  W  I  C  S  *  P  R  N  *  T  F  *   : G  N  K  V  *  T  F  C  H  V  *  K  T  R  Q  K  G  F  I  S  I  *  P   : D  *  R  W  G  Y  Y  M  L  S  E  E  N  F  S  *  S  *  R  T  S  P  I  S  R  C  S  F  I  Y  G  V  C  Q  K  S  P   : A  C  P  L  Q  S  T  G  K  T  E  G  G  *  F  L  S  G  V  :  S  K  K  *  Y  I  *  *  S  S  G  *  S  G  S  E  A  W  C  G  *  F  L  Q  N  *  A  Y  S  S  Q  L  L  L  T  A  T  Q  A  Q  P  H  Q  I  S  V  C  G  S  F  G  R  H  A  Y  P  L  Q  S   : D  L  R  Y  S  V  L  *  S  S  G  H  T  S  A  R  I  T  M  S  E  D  A  Q  S  C  L  P  S  F  Y  E  G  *   : D  *  N  S  E  C  K  I  A  *  A  E  Y  S  G  G  C  T  *  G  N  Q  I  K   : G  R  V  V  P  S  K  C  R  A  Q  I  T  R  G  L  L  S  Q  D  L  *   : D  L  S  A  Q  *  K  D  *  E  Y  K  *  P  I  L  D  I  A  G  R  G   : N  T  R  R  G  E  K  P  W  S  P  R  S  S  N  S  C  L  P  F  H  K  R  D  S  T  K  S  N   : A  S  A  E  F  W  R  T  F  L  S  G  H  P  *  R  *  N  F  S  G  N  *  S  A  D  S  K  E  I  A  G  L  G  *  G  V  L  *   : V  E  I  C  I  F  I  I  G  A  P  R  I  P  S  G  L  R  Y  C  I  Q  P  F  S   : E  E  R  C  L  W  C  L  G  A  V  P  W  I  G  A  C  R  *  Y  I  *  E  A  I  Y  *  S   : E  P  S  H  I  R  K  A  S  Q  D  I  Q  L  K  E  A  C  D  I  S  A  G  F  W  L  *  R  S  L  L  T  S  L  E  G  R  N  V  K  E  F  V  A  M  T  *  *  *  V  E  G  R  E  G  I  G  M  K  T  V  F  I  *  G  I  S  P  P  L  S  P  P  D  D  L  V  R  F  C  R  L  Y  V  F  P  S  I  S  F  G  E  G  D  L  F  L  F  S  L  V  R  M  C  A  A  V  S  A  L  A  F  S  Y  Y  T  A  E  G  W  F  F  *  C  C  L  L  H  S  L  F  C  I  *  D  F  G  *  R  E  C  I  A  D  I  V  V  G  C  L  L  G  M  Y  H  L  S  V  T  S  V  *  I  S  P  F  L  F  L  L  Y  L  M  S  *  E  W  G  M  D  L  Y  K  F  S  L  *  H  W  Y  M  F  S  M  L  H  F  C  L  C  C  C  Y  C  W  F  S  L  A  G  N  D  K  N  L  L  Q  L  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32224" stop="32183"/>
                    <exon start="29275" stop="29198"/>
                    <exon start="29095" stop="29007"/>
                    <exon start="28917" stop="28809"/>
                    <exon start="28709" stop="28641"/>
                    <exon start="28551" stop="28441"/>
                    <exon start="26066" stop="26011"/>
                    <exon start="25918" stop="25741"/>
                    <exon start="25617" stop="25516"/>
                    <exon start="25433" stop="25362"/>
                    <exon start="24485" stop="24420"/>
                    <exon start="24161" stop="24096"/>
                    <exon start="23779" stop="23693"/>
                    <exon start="23608" stop="23492"/>
                    <exon start="23365" stop="23291"/>
                    <exon start="23161" stop="23078"/>
                    <exon start="22539" stop="22498"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1440</number_coding_nucleotides>
                  <number_encoded_amino_acids>480</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPNRPLTPHEELQTVCQLREVSNKNNNAELKLFLEVDYGLDFIPGPPPDKSKDDILLFFKLYDPEKEELRYVGRLFVKSTSKPVEILPKLNELAGFAPDQEIELFEEIKFEPSVMCERLDRKASFRFSQIEDGDIICFQKKTSPEVEEQVRFPDVPSYMEYVKNRQLVHFRALEKPKEDDFCLELAKSDTYDEVVDRVAQRLGVDDSSKIRLTPHNCYSQQPKPNPIKYRSVDHLVDMLIHYNQISDILYYEVLDIPLPELQCLKTLKVAFHHSTKDEIEILNVRLPKQSTVGDVLEEIKSKVELSHPNAELRLLEVFYHKIYKIFPLSEKIENINDQYWTLRAEEIPEEEKNLGPHDRLIHVYHFTKETPQNQMQVQNFGEPFFLVIHEGETLAEIKVRIQKKLQVSDEEFSKWKFAFLSLGRPEYLQDSDIVSNRFQRRDVYGAWEQYLGLEHADNTSKRPYINQNRHTFEKPVKIYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="38742" PGL_stop="36442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38742" e_stop="38693"/>
            <exon e_start="37285" e_stop="37211"/>
            <exon e_start="37034" e_stop="36956"/>
            <exon e_start="36892" e_stop="36746"/>
            <exon e_start="36663" e_stop="36583"/>
            <exon e_start="36509" e_stop="36442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="0.980"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38742" e_stop="38693" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.963">
            <gDNA_intron_boundary i_start="38692" i_stop="37286" i_length="1407"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37285" e_stop="37211" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="37210" i_stop="37035" i_length="176"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37034" e_stop="36956" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.977">
            <gDNA_intron_boundary i_start="36955" i_stop="36893" i_length="63"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="36892" e_stop="36746" e_length="147"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="36745" i_stop="36664" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="36663" e_stop="36583" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36582" i_stop="36510" i_length="73"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="36509" e_stop="36442" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38742" stop="38693"/>
              <exon start="37285" stop="37211"/>
              <exon start="37034" stop="36956"/>
              <exon start="36892" stop="36746"/>
              <exon start="36663" stop="36583"/>
              <exon start="36509" stop="36442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCTCCTGATGCAGATAGGAGTGTACGGAATCTCTATACACTTCATAG : TGTGTTGGTTCATAGCGGCGGTGTGCATGGTGGACATTATTATGCTTTCATCAGGCCAACACTGTCAGATCAATG : GTATAAGTTTGATGATGAACGGGTGACAAAAGAAGACAATAAGAGGGCTCTAGAGGAACAATATGGTGGAGAAGAGGAG : TTGCCACAGACAAATCCCGGCTTCAATAACACTCCCTTCAAGTTTACTAAATATTCCAATGCTTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATCTGTGATGTTGGTGAGAAGGACATCGCGGAACACTTAAGG : ATAAGGTTGAAGAAAGAACAAGAAGAAAAGGAGGACAAGAGACGATACAAAGCACAGGCCCACCTGTATACAATCATCAAG : GTTGCACGGGATGAGGATCTTAGAGAACAGATTGGTAAGGAGATATATTTTGATCTTGTTGATCATGA</gDNA_template>
            <first_frame> L  S  P  D  A  D  R  S  V  R  N  L  Y  T  L  H  S :   V  L  V  H  S  G  G  V  H  G  G  H  Y  Y  A  F  I  R  P  T  L  S  D  Q  W :   Y  K  F  D  D  E  R  V  T  K  E  D  N  K  R  A  L  E  E  Q  Y  G  G  E  E  E  :  L  P  Q  T  N  P  G  F  N  N  T  P  F  K  F  T  K  Y  S  N  A  Y  M  L  V  Y  I  R  E  S  D  K  D  K  I  I  C  D  V  G  E  K  D  I  A  E  H  L  R  :  I  R  L  K  K  E  Q  E  E  K  E  D  K  R  R  Y  K  A  Q  A  H  L  Y  T  I  I  K  :  V  A  R  D  E  D  L  R  E  Q  I  G  K  E  I  Y  F  D  L  V  D  H   </first_frame>
            <second_frame>  C  L  L  M  Q  I  G  V  Y  G  I  S  I  H  F  I   : V  C  W  F  I  A  A  V  C  M  V  D  I  I  M  L  S  S  G  Q  H  C  Q  I  N   : G  I  S  L  M  M  N  G  *  Q  K  K  T  I  R  G  L  *  R  N  N  M  V  E  K  R  S :   C  H  R  Q  I  P  A  S  I  T  L  P  S  S  L  L  N  I  P  M  L  T  C  L  F  I  Y  V  R  V  T  R  I  K  *  S  V  M  L  V  R  R  T  S  R  N  T  *  G :   *  G  *  R  K  N  K  K  K  R  R  T  R  D  D  T  K  H  R  P  T  C  I  Q  S  S  R :   L  H  G  M  R  I  L  E  N  R  L  V  R  R  Y  I  L  I  L  L  I  M  </second_frame>
            <third_frame>   V  S  *  C  R  *  E  C  T  E  S  L  Y  T  S  *  :  C  V  G  S  *  R  R  C  A  W  W  T  L  L  C  F  H  Q  A  N  T  V  R  S  M  :  V  *  V  *  *  *  T  G  D  K  R  R  Q  *  E  G  S  R  G  T  I  W  W  R  R  G   : V  A  T  D  K  S  R  L  Q  *  H  S  L  Q  V  Y  *  I  F  Q  C  L  H  A  C  L  Y  T  *  E  *  Q  G  *  N  N  L  *  C  W  *  E  G  H  R  G  T  L  K   : D  K  V  E  E  R  T  R  R  K  G  G  Q  E  T  I  Q  S  T  G  P  P  V  Y  N  H  Q   : G  C  T  G  *  G  S  *  R  T  D  W  *  G  D  I  F  *  S  C  *  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38742" stop="38693"/>
                    <exon start="37285" stop="37211"/>
                    <exon start="37034" stop="36956"/>
                    <exon start="36892" stop="36746"/>
                    <exon start="36663" stop="36583"/>
                    <exon start="36509" stop="36444"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDNKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICDVGEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLREQIGKEIYFDLVDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="44626" PGL_stop="41873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44626" e_stop="44470"/>
            <exon e_start="43773" e_stop="43686"/>
            <exon e_start="43557" e_stop="43410"/>
            <exon e_start="43315" e_stop="43158"/>
            <exon e_start="42034" e_stop="41873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.833" e_score="0.994"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.844" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.625" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="44626" e_stop="44470" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.833">
            <gDNA_intron_boundary i_start="44469" i_stop="43774" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43773" e_stop="43686" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43685" i_stop="43558" i_length="128"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43557" e_stop="43410" e_length="148"/>
          </exon>
          <intron i_serial="3" don_prob="0.844" acc_prob="0.979">
            <gDNA_intron_boundary i_start="43409" i_stop="43316" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43315" e_stop="43158" e_length="158"/>
          </exon>
          <intron i_serial="4" don_prob="0.625" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43157" i_stop="42035" i_length="1123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="42034" e_stop="41873" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44626" stop="44470"/>
              <exon start="43773" stop="43686"/>
              <exon start="43557" stop="43410"/>
              <exon start="43315" stop="43158"/>
              <exon start="42034" stop="41873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599449" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCACCCCCCCATCTGAACTCATTTCTTCATATACCCCCCACCCCCACCCACCCCACCCTACCCCCTACTCACCTCGCCCACATCGCCGGTGATTAGTTGATCGGACGGTGACTCTTTATCCTCAAACATGACCATGCTGAATCCTCAACCGCTGGAT : CAGCAGGAAGACGAGGAGATGCTTGTGCCACATTCTGAATTAGTTGAAGGTCCTCAGCCTTTAGTTGAAGGGCCTCAGCCAATGGAAG : TGGCAGCTTCTGAGAATGCTACTACTGGGGAGAACCAAGCCGTGGACGAGCCTCAGGCTTCCCGGTTTACATGGACAATTGATGAATTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGCCTTTTGTTGTTGGTAGTTATAAATG : GAGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAGTGTTTGTCAATGTATTTAGATGTGGCAGATTCAGCTACATTGCCATATGGGTGGAACAGATATGCACAGTTCAGCTTAACAGTTGTAAATCAGATAAACCCCAAATATTCAGTGAAAAAAG : AGACGCAGCACCAGTTTAACCAAAGAGAGAGTGATTGGGGCTTCACATCATTCATGCTTCTAAGTGATCTTTATGATCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAAGCTGATGTTGCTGTAAGGAAGGTCATTGATTACTGGACATATG</gDNA_template>
            <first_frame> P  P  P  H  L  N  S  F  L  H  I  P  P  T  P  T  H  P  T  L  P  P  T  H  L  A  H  I  A  G  D  *  L  I  G  R  *  L  F  I  L  K  H  D  H  A  E  S  S  T  A  G   : S  A  G  R  R  G  D  A  C  A  T  F  *  I  S  *  R  S  S  A  F  S  *  R  A  S  A  N  G  S :   G  S  F  *  E  C  Y  Y  W  G  E  P  S  R  G  R  A  S  G  F  P  V  Y  M  D  N  *  *  I  L  S  V  I  C  E  E  A  I  F  *  A  F  C  C  W  *  L  *  M  :  E  S  A  Y  I  S  K  R  K  Q  R  G  V  F  V  N  V  F  R  C  G  R  F  S  Y  I  A  I  W  V  E  Q  I  C  T  V  Q  L  N  S  C  K  S  D  K  P  Q  I  F  S  E  K  R :   D  A  A  P  V  *  P  K  R  E  *  L  G  L  H  I  I  H  A  S  K  *  S  L  *  S  Q  *  G  I  S  C  K  *  *  S  C  Y  *  S  *  C  C  C  K  E  G  H  *  L  L  D  I   </first_frame>
            <second_frame>  H  P  P  I  *  T  H  F  F  I  Y  P  P  P  P  P  T  P  P  Y  P  L  L  T  S  P  T  S  P  V  I  S  *  S  D  G  D  S  L  S  S  N  M  T  M  L  N  P  Q  P  L  D  :  Q  Q  E  D  E  E  M  L  V  P  H  S  E  L  V  E  G  P  Q  P  L  V  E  G  P  Q  P  M  E   : V  A  A  S  E  N  A  T  T  G  E  N  Q  A  V  D  E  P  Q  A  S  R  F  T  W  T  I  D  E  F  S  R  L  S  V  K  K  L  Y  S  E  P  F  V  V  G  S  Y  K  W :   R  V  L  I  F  P  K  G  N  N  V  E  C  L  S  M  Y  L  D  V  A  D  S  A  T  L  P  Y  G  W  N  R  Y  A  Q  F  S  L  T  V  V  N  Q  I  N  P  K  Y  S  V  K  K   : E  T  Q  H  Q  F  N  Q  R  E  S  D  W  G  F  T  S  F  M  L  L  S  D  L  Y  D  P  N  K  G  Y  L  V  N  D  K  V  V  I  E  A  D  V  A  V  R  K  V  I  D  Y  W  T  Y  </second_frame>
            <third_frame>   T  P  P  S  E  L  I  S  S  Y  T  P  H  P  H  P  P  H  P  T  P  Y  S  P  R  P  H  R  R  *  L  V  D  R  T  V  T  L  Y  P  Q  T  *  P  C  *  I  L  N  R  W  I :   S  R  K  T  R  R  C  L  C  H  I  L  N  *  L  K  V  L  S  L  *  L  K  G  L  S  Q  W  K  :  W  Q  L  L  R  M  L  L  L  G  R  T  K  P  W  T  S  L  R  L  P  G  L  H  G  Q  L  M  N  S  L  G  Y  L  *  R  S  Y  I  L  S  L  L  L  L  V  V  I  N   : G  E  C  L  Y  F  Q  K  E  T  T  W  S  V  C  Q  C  I  *  M  W  Q  I  Q  L  H  C  H  M  G  G  T  D  M  H  S  S  A  *  Q  L  *  I  R  *  T  P  N  I  Q  *  K  K  :  R  R  S  T  S  L  T  K  E  R  V  I  G  A  S  H  H  S  C  F  *  V  I  F  M  I  P  I  R  D  I  L  *  M  I  K  L  L  L  K  L  M  L  L  *  G  R  S  L  I  T  G  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44526" stop="44470"/>
                    <exon start="43773" stop="43686"/>
                    <exon start="43557" stop="43410"/>
                    <exon start="43315" stop="43158"/>
                    <exon start="42034" stop="41874"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>612</number_coding_nucleotides>
                  <number_encoded_amino_acids>204</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDGDSLSSNMTMLNPQPLDQQEDEEMLVPHSELVEGPQPLVEGPQPMEVAASENATTGENQAVDEPQASRFTWTIDEFSRLSVKKLYSEPFVVGSYKWRVLIFPKGNNVECLSMYLDVADSATLPYGWNRYAQFSLTVVNQINPKYSVKKETQHQFNQRESDWGFTSFMLLSDLYDPNKGYLVNDKVVIEADVAVRKVIDYWTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50805" PGL_stop="50909"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50805" e_stop="50909"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="50805" e_stop="50909" e_length="105"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50805" stop="50909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGGGAAACAAAAACCAAAAAAAAGAAATACACAAATTTAGGGTTTTCAATTCCCTTCTTTTCTCTCTCCCACGTTTAATTTGTTTCTTTTTTTTTTTTCCTCT</gDNA_template>
            <first_frame> L  G  K  Q  K  P  K  K  R  N  T  Q  I  *  G  F  Q  F  P  S  F  L  S  P  T  F  N  L  F  L  F  F  F  S  S </first_frame>
            <second_frame>  W  G  N  K  N  Q  K  K  E  I  H  K  F  R  V  F  N  S  L  L  F  S  L  P  R  L  I  C  F  F  F  F  F  P   </second_frame>
            <third_frame>   G  E  T  K  T  K  K  K  K  Y  T  N  L  G  F  S  I  P  F  F  S  L  S  H  V  *  F  V  S  F  F  F  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0021O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="50924" PGL_stop="52359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50924" e_stop="51071"/>
            <exon e_start="51749" e_stop="52359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.993"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="50924" e_stop="51071" e_length="148"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="51072" i_stop="51748" i_length="677"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="51749" e_stop="52359" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50924" stop="51071"/>
              <exon start="51749" stop="52359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U569376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCTCTCTATCTCTCTATTTTCATTTTTCTCCCTTGGTTTTCTCGATTTCTTCAATTCTCCGGGAAGCTAGAACGATAATTTCCATTTTTTTCCGGGAGAATTTCACCTCCGTTTCTCAGCTACAGCTATACCGTATGATTTTCAG : GAATGTGTATTCTGTATTGCAACTGAGGGAAGGAGGAATTCATCCTATGTGAAGTCGAGGGGTATACATATATACATAATCATTTTATCGAAGATGGAGGGATTGAGAGCTTGTTGTACAGGATTAATCGTCTTTTAATTTGTGGTATTTCTGTTATTTTTTCCTGGTTTTCTTTTATGATTCTATTTGAGGAATCAATTTCTGAATTGAGGCTGGACGATTGATTGGATGTGCAATAGAATATGGATTCTCAAAATTCGCCCCCGACGACCAGCCAGGTCAACTGTTGTTACTGCGGGTGCAGCAGTTGTTCTGCAATGAACAGGTCCTATTCAGGGACTTGGCTCCGATCTGTGAAGCGAAAATTTGATGAATATAATGAGAATAAGTTTATGATCCCAGGCTTTGTCTTACCTCTGAATGCTCGTATTGAAATTGAAAATGAATGTACAGCACTTAGGGAAATGGTAAGTAAGCAACAACACACGATTCAGGATTTAGGTGCTGAGTTGGAGGAAGAACGAAATGCGTCTTCCTCGGCAGCGAATGAGGCCATGTCCATGATTTTGAGGCTGCAAGGAGAAAAGGCAGAGGTTCAGATGGAATTTAAA</gDNA_template>
            <first_frame> L  S  L  Y  L  S  I  F  I  F  L  P  W  F  S  R  F  L  Q  F  S  G  K  L  E  R  *  F  P  F  F  S  G  R  I  S  P  P  F  L  S  Y  S  Y  T  V  *  F  S   : G  M  C  I  L  Y  C  N  *  G  K  E  E  F  I  L  C  E  V  E  G  Y  T  Y  I  H  N  H  F  I  E  D  G  G  I  E  S  L  L  Y  R  I  N  R  L  L  I  C  G  I  S  V  I  F  S  W  F  S  F  M  I  L  F  E  E  S  I  S  E  L  R  L  D  D  *  L  D  V  Q  *  N  M  D  S  Q  N  S  P  P  T  T  S  Q  V  N  C  C  Y  C  G  C  S  S  C  S  A  M  N  R  S  Y  S  G  T  W  L  R  S  V  K  R  K  F  D  E  Y  N  E  N  K  F  M  I  P  G  F  V  L  P  L  N  A  R  I  E  I  E  N  E  C  T  A  L  R  E  M  V  S  K  Q  Q  H  T  I  Q  D  L  G  A  E  L  E  E  E  R  N  A  S  S  S  A  A  N  E  A  M  S  M  I  L  R  L  Q  G  E  K  A  E  V  Q  M  E  F  K </first_frame>
            <second_frame>  S  L  S  I  S  L  F  S  F  F  S  L  G  F  L  D  F  F  N  S  P  G  S  *  N  D  N  F  H  F  F  P  G  E  F  H  L  R  F  S  A  T  A  I  P  Y  D  F  Q  :  E  C  V  F  C  I  A  T  E  G  R  R  N  S  S  Y  V  K  S  R  G  I  H  I  Y  I  I  I  L  S  K  M  E  G  L  R  A  C  C  T  G  L  I  V  F  *  F  V  V  F  L  L  F  F  P  G  F  L  L  *  F  Y  L  R  N  Q  F  L  N  *  G  W  T  I  D  W  M  C  N  R  I  W  I  L  K  I  R  P  R  R  P  A  R  S  T  V  V  T  A  G  A  A  V  V  L  Q  *  T  G  P  I  Q  G  L  G  S  D  L  *  S  E  N  L  M  N  I  M  R  I  S  L  *  S  Q  A  L  S  Y  L  *  M  L  V  L  K  L  K  M  N  V  Q  H  L  G  K  W  *  V  S  N  N  T  R  F  R  I  *  V  L  S  W  R  K  N  E  M  R  L  P  R  Q  R  M  R  P  C  P  *  F  *  G  C  K  E  K  R  Q  R  F  R  W  N  L   </second_frame>
            <third_frame>   L  S  L  S  L  Y  F  H  F  S  P  L  V  F  S  I  S  S  I  L  R  E  A  R  T  I  I  S  I  F  F  R  E  N  F  T  S  V  S  Q  L  Q  L  Y  R  M  I  F  R :   N  V  Y  S  V  L  Q  L  R  E  G  G  I  H  P  M  *  S  R  G  V  Y  I  Y  T  *  S  F  Y  R  R  W  R  D  *  E  L  V  V  Q  D  *  S  S  F  N  L  W  Y  F  C  Y  F  F  L  V  F  F  Y  D  S  I  *  G  I  N  F  *  I  E  A  G  R  L  I  G  C  A  I  E  Y  G  F  S  K  F  A  P  D  D  Q  P  G  Q  L  L  L  L  R  V  Q  Q  L  F  C  N  E  Q  V  L  F  R  D  L  A  P  I  C  E  A  K  I  *  *  I  *  *  E  *  V  Y  D  P  R  L  C  L  T  S  E  C  S  Y  *  N  *  K  *  M  Y  S  T  *  G  N  G  K  *  A  T  T  H  D  S  G  F  R  C  *  V  G  G  R  T  K  C  V  F  L  G  S  E  *  G  H  V  H  D  F  E  A  A  R  R  K  G  R  G  S  D  G  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51988" stop="52359"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMDSQNSPPTTSQVNCCYCGCSSCSAMNRSYSGTWLRSVKRKFDEYNENKFMIPGFVLPLNARIEIENECTALREMVSKQQHTIQDLGAELEEERNASSSAANEAMSMILRLQGEKAEVQMEFK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50997" stop="51071"/>
                    <exon start="51749" stop="51886"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NDNFHFFPGEFHLRFSATAIPYDFQECVFCIATEGRRNSSYVKSRGIHIYIIILSKMEGLRACCTGLIVF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="52579" PGL_stop="55584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52579" e_stop="53391"/>
            <exon e_start="54901" e_stop="54947"/>
            <exon e_start="55127" e_stop="55584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.999" e_score="0.999"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="52579" e_stop="53391" e_length="813"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.999">
            <gDNA_intron_boundary i_start="53392" i_stop="54900" i_length="1509"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54901" e_stop="54947" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="54948" i_stop="55126" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="55127" e_stop="55584" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52579" stop="53391"/>
              <exon start="54901" stop="54947"/>
              <exon start="55127" stop="55584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGACTATCAATGGGCAATTCGAAGTTCCTCCCTTCGATTACCCTCCATTGAAATGCACTATTAATGAAAATCAAGTATACACAGAATTTGATAATGACATTGTTGATGTTGAGAAATATGCATTTGAAGAGACCCCACGTTCGTGTGACCAATTGCGGGATTTGGAGCATAGGATCAATCAATTGGAGAGGACGCCAAGAAGCACTGATGGGGATCTTTTCAAGAACAACATACTTGAAAAAGTGATAGTTGGTCATTCCCCAAGGAGGAATAGACATCTTAGAAAGTTTTCAACTGATAGTGTAGGATCTCCCTTCATTACAAATAAAGAAATTAACTCAGATTTCATCTCAGATTCTCCAAGATTTGGTGGGAGTATTAGAAAAACAGAATATTCACAAACAGAAGAGCGTTCAAACTTGAGGAAGGTGGATAATTCATCAGAAATTGGAGATGACATGAGTGACCGAGTTTACACAATTGATTCTGTACATCAGGGGGCTGGATATAATGGTGTGTCAGAACTCAAGTCTTCAGCTGGAATGGTTGACGACTATACCCCAAGGGATTCATTAAATAACACAGATTTTGGAGATCCAGAGGTCACAAAGTTGTATTTTAGGCTCCAGGCACTTGAGGCTGACCGGGAATCAATGAGACAGGCTATGATTGCTATGCGGACTGATAAAGCACAGGTGATATTGCTCAAGGAGATTGCTCAGCAGTTATGCAAAGAGATGTCTCCAGCCGTGAGAAAACCTGCAAAGAAGACATCTGTAATTGGGAGCTTTTCATGCATGTCTATATTCAAG : TGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAA : GTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</gDNA_template>
            <first_frame> E  T  I  N  G  Q  F  E  V  P  P  F  D  Y  P  P  L  K  C  T  I  N  E  N  Q  V  Y  T  E  F  D  N  D  I  V  D  V  E  K  Y  A  F  E  E  T  P  R  S  C  D  Q  L  R  D  L  E  H  R  I  N  Q  L  E  R  T  P  R  S  T  D  G  D  L  F  K  N  N  I  L  E  K  V  I  V  G  H  S  P  R  R  N  R  H  L  R  K  F  S  T  D  S  V  G  S  P  F  I  T  N  K  E  I  N  S  D  F  I  S  D  S  P  R  F  G  G  S  I  R  K  T  E  Y  S  Q  T  E  E  R  S  N  L  R  K  V  D  N  S  S  E  I  G  D  D  M  S  D  R  V  Y  T  I  D  S  V  H  Q  G  A  G  Y  N  G  V  S  E  L  K  S  S  A  G  M  V  D  D  Y  T  P  R  D  S  L  N  N  T  D  F  G  D  P  E  V  T  K  L  Y  F  R  L  Q  A  L  E  A  D  R  E  S  M  R  Q  A  M  I  A  M  R  T  D  K  A  Q  V  I  L  L  K  E  I  A  Q  Q  L  C  K  E  M  S  P  A  V  R  K  P  A  K  K  T  S  V  I  G  S  F  S  C  M  S  I  F  K  :  W  I  T  C  F  V  L  W  R  R  K  A  R  R  C  K :   Y  P  F  G  S  S  T  N  N  P  G  L  L  M  L  L  D  K  G  P  H  V  E  Q  W  R  C  L  M  S  T  Q  V  *  K  P  A  P  S  S  P  H  R  S  L  K  T  V  T  *  T  S  V  R  K  G  L  *  S  D  *  L  L  F  H  F  T  F  F  L  P  L  V  F  L  A  A  A  N  C  G  F  T  L  H  C  V  L  P  L  N  S  W  N  C  N  L  W  L  N  Q  C  H  R  K  Y  R  C  S  T  A  S  L  E  L  V  N  N  C  D  Q  Y  G  L  F  G  L  Y  S  S  F  Y  F  S  F  Y  L  Y  I  T  T  C  E  *  I  F  S  L  G  T  F  S  </first_frame>
            <second_frame>  R  L  S  M  G  N  S  K  F  L  P  S  I  T  L  H  *  N  A  L  L  M  K  I  K  Y  T  Q  N  L  I  M  T  L  L  M  L  R  N  M  H  L  K  R  P  H  V  R  V  T  N  C  G  I  W  S  I  G  S  I  N  W  R  G  R  Q  E  A  L  M  G  I  F  S  R  T  T  Y  L  K  K  *  *  L  V  I  P  Q  G  G  I  D  I  L  E  S  F  Q  L  I  V  *  D  L  P  S  L  Q  I  K  K  L  T  Q  I  S  S  Q  I  L  Q  D  L  V  G  V  L  E  K  Q  N  I  H  K  Q  K  S  V  Q  T  *  G  R  W  I  I  H  Q  K  L  E  M  T  *  V  T  E  F  T  Q  L  I  L  Y  I  R  G  L  D  I  M  V  C  Q  N  S  S  L  Q  L  E  W  L  T  T  I  P  Q  G  I  H  *  I  T  Q  I  L  E  I  Q  R  S  Q  S  C  I  L  G  S  R  H  L  R  L  T  G  N  Q  *  D  R  L  *  L  L  C  G  L  I  K  H  R  *  Y  C  S  R  R  L  L  S  S  Y  A  K  R  C  L  Q  P  *  E  N  L  Q  R  R  H  L  *  L  G  A  F  H  A  C  L  Y  S  S :   G  S  H  A  L  F  Y  G  E  E  K  H  A  D  A   : S  T  H  L  D  H  R  P  T  I  Q  A  C  *  C  F  *  T  R  D  L  M  W  S  S  G  D  V  *  *  A  R  R  C  K  N  Q  L  Q  V  V  H  I  D  H  *  R  L  *  H  K  R  Q  Y  E  R  D  C  S  Q  I  D  C  F  F  I  L  L  S  F  S  P  L  Y  F  L  L  Q  Q  I  V  G  S  L  C  T  V  F  F  P  L  I  H  G  I  V  T  F  G  *  T  S  V  I  E  N  I  D  V  P  L  P  V  W  N  L  *  I  I  V  I  N  M  A  C  L  V  S  T  Q  V  F  I  F  L  F  T  C  I  L  Q  L  V  N  E  F  F  L  L  V  L  F  L </second_frame>
            <third_frame>   D  Y  Q  W  A  I  R  S  S  S  L  R  L  P  S  I  E  M  H  Y  *  *  K  S  S  I  H  R  I  *  *  *  H  C  *  C  *  E  I  C  I  *  R  D  P  T  F  V  *  P  I  A  G  F  G  A  *  D  Q  S  I  G  E  D  A  K  K  H  *  W  G  S  F  Q  E  Q  H  T  *  K  S  D  S  W  S  F  P  K  E  E  *  T  S  *  K  V  F  N  *  *  C  R  I  S  L  H  Y  K  *  R  N  *  L  R  F  H  L  R  F  S  K  I  W  W  E  Y  *  K  N  R  I  F  T  N  R  R  A  F  K  L  E  E  G  G  *  F  I  R  N  W  R  *  H  E  *  P  S  L  H  N  *  F  C  T  S  G  G  W  I  *  W  C  V  R  T  Q  V  F  S  W  N  G  *  R  L  Y  P  K  G  F  I  K  *  H  R  F  W  R  S  R  G  H  K  V  V  F  *  A  P  G  T  *  G  *  P  G  I  N  E  T  G  Y  D  C  Y  A  D  *  *  S  T  G  D  I  A  Q  G  D  C  S  A  V  M  Q  R  D  V  S  S  R  E  K  T  C  K  E  D  I  C  N  W  E  L  F  M  H  V  Y  I  Q   : V  D  H  M  L  C  F  M  E  K  K  S  T  Q  M  Q  :  V  P  I  W  I  I  D  Q  Q  S  R  L  A  N  A  F  R  Q  G  T  S  C  G  A  V  E  M  S  D  E  H  A  G  V  K  T  S  S  K  *  S  T  S  I  T  E  D  C  N  I  N  V  S  T  K  G  I  V  V  R  L  I  A  F  S  F  Y  F  L  S  P  P  C  I  S  C  C  S  K  L  W  V  H  S  A  L  C  S  S  P  *  F  M  E  L  *  P  L  A  E  P  V  S  S  K  I  *  M  F  H  C  Q  F  G  T  C  E  *  L  *  S  I  W  L  V  W  S  L  L  K  F  L  F  F  F  L  P  V  Y  Y  N  L  *  M  N  F  F  S  W  Y  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52579" stop="53391"/>
                    <exon start="54901" stop="54947"/>
                    <exon start="55127" stop="55229"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETINGQFEVPPFDYPPLKCTINENQVYTEFDNDIVDVEKYAFEETPRSCDQLRDLEHRINQLERTPRSTDGDLFKNNILEKVIVGHSPRRNRHLRKFSTDSVGSPFITNKEINSDFISDSPRFGGSIRKTEYSQTEERSNLRKVDNSSEIGDDMSDRVYTIDSVHQGAGYNGVSELKSSAGMVDDYTPRDSLNNTDFGDPEVTKLYFRLQALEADRESMRQAMIAMRTDKAQVILLKEIAQQLCKEMSPAVRKPAKKTSVIGSFSCMSIFKWITCFVLWRRKARRCKYPFGSSTNNPGLLMLLDKGPHVEQWRCLMSTQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55311" stop="55559"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHFTFFLPLVFLAAANCGFTLHCVLPLNSWNCNLWLNQCHRKYRCSTASLELVNNCDQYGLFGLYSSFYFSFYLYITTCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="56369" PGL_stop="57076"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56369" e_stop="57076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="56369" e_stop="57076" e_length="708"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56369" stop="57076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTACGGTCTAAACCAGGGGCAAAACCCCCTTTGTTTTTGTAGGAGAAACTGCAAATACTACTCTCAGTGAAAAACCTCAAGGCTTTGGCGGCTCAAACTATACTTCACAACTTCAACAATGCTGGGTTCCAAGAGCTTGTTATTCAAGCAGCAAAAACGAAAGAGAAAAAATGGTAAGATTAAGAAATCGAAGAGAATTTCTGTTTCTGCAAAAGAAGAAACTGTAGCGGAACCATGCCAAATAGCCCCAGAAGAAGAAGAAGAAGAAGAGGAGGAAGGTTTCAGTTTGAAATCTACAGCACAATCAGATTCCTACGGAGTTCAGCCACTTGGGAATCTTTATTTCAACCCATCATCTCATAATTCAAGAAATACTGGTCTAGGTAATCTTCAGACTTTAACTGATGAGCTTGTTCTTGATATTTTAGGTCTTTTGGAAGGTACCCATTTAGGTATTTTGTCAACTGTTAGCAAAGGTTTCTATATTTTCTGTAATCATGAACCCCTTTGGAGGAATCTTGTATTGGAGACTTGTAAAGGTGGGTTTTTGTTTAAGGGGTGTTGGAGGTCTACTTTTATTAGTGCATATAGGCCTTCATTTCCAGTTTTGAGTTTTGGTTTGAAAGTTAGAGACTTTTATTCTGATTACTTGTTTCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACCTGAATGGCTAGAGAGGGA</gDNA_template>
            <first_frame> V  R  S  K  P  G  A  K  P  P  L  F  L  *  E  K  L  Q  I  L  L  S  V  K  N  L  K  A  L  A  A  Q  T  I  L  H  N  F  N  N  A  G  F  Q  E  L  V  I  Q  A  A  K  T  K  E  K  K  W  *  D  *  E  I  E  E  N  F  C  F  C  K  R  R  N  C  S  G  T  M  P  N  S  P  R  R  R  R  R  R  R  G  G  R  F  Q  F  E  I  Y  S  T  I  R  F  L  R  S  S  A  T  W  E  S  L  F  Q  P  I  I  S  *  F  K  K  Y  W  S  R  *  S  S  D  F  N  *  *  A  C  S  *  Y  F  R  S  F  G  R  Y  P  F  R  Y  F  V  N  C  *  Q  R  F  L  Y  F  L  *  S  *  T  P  L  E  E  S  C  I  G  D  L  *  R  W  V  F  V  *  G  V  L  E  V  Y  F  Y  *  C  I  *  A  F  I  S  S  F  E  F  W  F  E  S  *  R  L  L  F  *  L  L  V  S  E  L  V  M  C  *  S  *  N  E  T  *  M  A  R  E  G </first_frame>
            <second_frame>  Y  G  L  N  Q  G  Q  N  P  L  C  F  C  R  R  N  C  K  Y  Y  S  Q  *  K  T  S  R  L  W  R  L  K  L  Y  F  T  T  S  T  M  L  G  S  K  S  L  L  F  K  Q  Q  K  R  K  R  K  N  G  K  I  K  K  S  K  R  I  S  V  S  A  K  E  E  T  V  A  E  P  C  Q  I  A  P  E  E  E  E  E  E  E  E  E  G  F  S  L  K  S  T  A  Q  S  D  S  Y  G  V  Q  P  L  G  N  L  Y  F  N  P  S  S  H  N  S  R  N  T  G  L  G  N  L  Q  T  L  T  D  E  L  V  L  D  I  L  G  L  L  E  G  T  H  L  G  I  L  S  T  V  S  K  G  F  Y  I  F  C  N  H  E  P  L  W  R  N  L  V  L  E  T  C  K  G  G  F  L  F  K  G  C  W  R  S  T  F  I  S  A  Y  R  P  S  F  P  V  L  S  F  G  L  K  V  R  D  F  Y  S  D  Y  L  F  Q  S  W  L  C  A  N  L  E  M  K  P  E  W  L  E  R   </second_frame>
            <third_frame>   T  V  *  T  R  G  K  T  P  F  V  F  V  G  E  T  A  N  T  T  L  S  E  K  P  Q  G  F  G  G  S  N  Y  T  S  Q  L  Q  Q  C  W  V  P  R  A  C  Y  S  S  S  K  N  E  R  E  K  M  V  R  L  R  N  R  R  E  F  L  F  L  Q  K  K  K  L  *  R  N  H  A  K  *  P  Q  K  K  K  K  K  K  R  R  K  V  S  V  *  N  L  Q  H  N  Q  I  P  T  E  F  S  H  L  G  I  F  I  S  T  H  H  L  I  I  Q  E  I  L  V  *  V  I  F  R  L  *  L  M  S  L  F  L  I  F  *  V  F  W  K  V  P  I  *  V  F  C  Q  L  L  A  K  V  S  I  F  S  V  I  M  N  P  F  G  G  I  L  Y  W  R  L  V  K  V  G  F  C  L  R  G  V  G  G  L  L  L  L  V  H  I  G  L  H  F  Q  F  *  V  L  V  *  K  L  E  T  F  I  L  I  T  C  F  R  V  G  Y  V  L  I  L  K  *  N  L  N  G  *  R  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56439" stop="57074"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSRLWRLKLYFTTSTMLGSKSLLFKQQKRKRKNGKIKKSKRISVSAKEETVAEPCQIAPEEEEEEEEEGFSLKSTAQSDSYGVQPLGNLYFNPSSHNSRNTGLGNLQTLTDELVLDILGLLEGTHLGILSTVSKGFYIFCNHEPLWRNLVLETCKGGFLFKGCWRSTFISAYRPSFPVLSFGLKVRDFYSDYLFQSWLCANLEMKPEWLER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="57142" PGL_stop="59048"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57142" e_stop="57775"/>
            <exon e_start="58807" e_stop="59048"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.976" e_score="0.998"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="57142" e_stop="57775" e_length="634"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.976">
            <gDNA_intron_boundary i_start="57776" i_stop="58806" i_length="1031"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="58807" e_stop="59048" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57142" stop="57775"/>
              <exon start="58807" stop="59048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCGGTTTTGTTAGAAGGGTGTTTGGAGAATTGGCCTGGATTGGAGAAATGGAATAGGGATTATCTTGTTAAGAAATGTGGGGATGTGAAATTTTCTGTTGGGCCGGTGGAAATGAAACTTGAAGACTACTTTAAGTACTCTGATCAAGTGAGGGAAGAAAGGCCCTTGTATTTGTTTGACCCAAAGTTTGCGGAGAAAATTCCTCAATTAGGAAAGGATTATGATGTCCCAATGTACTTCAATGAGGATTTGTTTAGTGTTTTGGGTAATGAGAGGCCAGATTATAGGTGGATTATAATTGGACCTGCAGGGTCTGGCTCGTCATTTCACATCGATCCAAATTCTACCTCTGCTTGGAATGCGGTAACCAAAGGATCCAAGAAATGGATATTATTTCCCCCGGATGTGGTGCCACCAGGGGTTCATCCAAGCCCTGACGGTGCAGAAGTAGCAAGTCCTGTTTCAATCATAGAATGGTTCATGAACTTTTACAACGCAACCAAGAATTGGAAAAAGAGACCTATCGAATGTATCTGCAAGGCGGGTGAAGTTATTTTTGTACCTAATGGATGGTGGCATTTGGTCATCAATTTAGAGGATTCAATTGCCATTACACAGAACTTCGTTAGCAG : GAGGAATTTAGTGAATGTTTTGGAGTTCCTAAAAAGGCCAAATGCTTGCACTCTTGTGTCTGGAACAAGCGACAGAGTCAATTTGCACGACAAATTTAAGAATGCCATCGAAGCACATCTTCCTGGTACTATTGATGAGTTGACTCTGAAAGCCGAGGAGAAAAAGGCGCAGCAGAACAAACCTTCCTTCTGGGAGTCAGTCACTGATTCAAATGCAGGCGTTTTCAGATTTTCTTTTTGAT</gDNA_template>
            <first_frame> S  R  F  C  *  K  G  V  W  R  I  G  L  D  W  R  N  G  I  G  I  I  L  L  R  N  V  G  M  *  N  F  L  L  G  R  W  K  *  N  L  K  T  T  L  S  T  L  I  K  *  G  K  K  G  P  C  I  C  L  T  Q  S  L  R  R  K  F  L  N  *  E  R  I  M  M  S  Q  C  T  S  M  R  I  C  L  V  F  W  V  M  R  G  Q  I  I  G  G  L  *  L  D  L  Q  G  L  A  R  H  F  T  S  I  Q  I  L  P  L  L  G  M  R  *  P  K  D  P  R  N  G  Y  Y  F  P  R  M  W  C  H  Q  G  F  I  Q  A  L  T  V  Q  K  *  Q  V  L  F  Q  S  *  N  G  S  *  T  F  T  T  Q  P  R  I  G  K  R  D  L  S  N  V  S  A  R  R  V  K  L  F  L  Y  L  M  D  G  G  I  W  S  S  I  *  R  I  Q  L  P  L  H  R  T  S  L  A   : G  G  I  *  *  M  F  W  S  S  *  K  G  Q  M  L  A  L  L  C  L  E  Q  A  T  E  S  I  C  T  T  N  L  R  M  P  S  K  H  I  F  L  V  L  L  M  S  *  L  *  K  P  R  R  K  R  R  S  R  T  N  L  P  S  G  S  Q  S  L  I  Q  M  Q  A  F  S  D  F  L  F  D </first_frame>
            <second_frame>  A  G  F  V  R  R  V  F  G  E  L  A  W  I  G  E  M  E  *  G  L  S  C  *  E  M  W  G  C  E  I  F  C  W  A  G  G  N  E  T  *  R  L  L  *  V  L  *  S  S  E  G  R  K  A  L  V  F  V  *  P  K  V  C  G  E  N  S  S  I  R  K  G  L  *  C  P  N  V  L  Q  *  G  F  V  *  C  F  G  *  *  E  A  R  L  *  V  D  Y  N  W  T  C  R  V  W  L  V  I  S  H  R  S  K  F  Y  L  C  L  E  C  G  N  Q  R  I  Q  E  M  D  I  I  S  P  G  C  G  A  T  R  G  S  S  K  P  *  R  C  R  S  S  K  S  C  F  N  H  R  M  V  H  E  L  L  Q  R  N  Q  E  L  E  K  E  T  Y  R  M  Y  L  Q  G  G  *  S  Y  F  C  T  *  W  M  V  A  F  G  H  Q  F  R  G  F  N  C  H  Y  T  E  L  R  *  Q  :  E  E  F  S  E  C  F  G  V  P  K  K  A  K  C  L  H  S  C  V  W  N  K  R  Q  S  Q  F  A  R  Q  I  *  E  C  H  R  S  T  S  S  W  Y  Y  *  *  V  D  S  E  S  R  G  E  K  G  A  A  E  Q  T  F  L  L  G  V  S  H  *  F  K  C  R  R  F  Q  I  F  F  L   </second_frame>
            <third_frame>   P  V  L  L  E  G  C  L  E  N  W  P  G  L  E  K  W  N  R  D  Y  L  V  K  K  C  G  D  V  K  F  S  V  G  P  V  E  M  K  L  E  D  Y  F  K  Y  S  D  Q  V  R  E  E  R  P  L  Y  L  F  D  P  K  F  A  E  K  I  P  Q  L  G  K  D  Y  D  V  P  M  Y  F  N  E  D  L  F  S  V  L  G  N  E  R  P  D  Y  R  W  I  I  I  G  P  A  G  S  G  S  S  F  H  I  D  P  N  S  T  S  A  W  N  A  V  T  K  G  S  K  K  W  I  L  F  P  P  D  V  V  P  P  G  V  H  P  S  P  D  G  A  E  V  A  S  P  V  S  I  I  E  W  F  M  N  F  Y  N  A  T  K  N  W  K  K  R  P  I  E  C  I  C  K  A  G  E  V  I  F  V  P  N  G  W  W  H  L  V  I  N  L  E  D  S  I  A  I  T  Q  N  F  V  S  R :   R  N  L  V  N  V  L  E  F  L  K  R  P  N  A  C  T  L  V  S  G  T  S  D  R  V  N  L  H  D  K  F  K  N  A  I  E  A  H  L  P  G  T  I  D  E  L  T  L  K  A  E  E  K  K  A  Q  Q  N  K  P  S  F  W  E  S  V  T  D  S  N  A  G  V  F  R  F  S  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57144" stop="57775"/>
                    <exon start="58807" stop="59047"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>870</number_coding_nucleotides>
                  <number_encoded_amino_acids>290</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVLLEGCLENWPGLEKWNRDYLVKKCGDVKFSVGPVEMKLEDYFKYSDQVREERPLYLFDPKFAEKIPQLGKDYDVPMYFNEDLFSVLGNERPDYRWIIIGPAGSGSSFHIDPNSTSAWNAVTKGSKKWILFPPDVVPPGVHPSPDGAEVASPVSIIEWFMNFYNATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEDSIAITQNFVSRRNLVNVLEFLKRPNACTLVSGTSDRVNLHDKFKNAIEAHLPGTIDELTLKAEEKKAQQNKPSFWESVTDSNAGVFRFSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71317" PGL_stop="66052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71317" e_stop="70263"/>
            <exon e_start="69834" e_stop="69628"/>
            <exon e_start="69537" e_stop="69438"/>
            <exon e_start="69046" e_stop="68964"/>
            <exon e_start="68876" e_stop="68820"/>
            <exon e_start="68739" e_stop="68587"/>
            <exon e_start="67954" e_stop="67876"/>
            <exon e_start="67736" e_stop="67588"/>
            <exon e_start="67509" e_stop="67375"/>
            <exon e_start="67268" e_stop="67155"/>
            <exon e_start="67006" e_stop="66896"/>
            <exon e_start="66803" e_stop="66695"/>
            <exon e_start="66264" e_stop="66052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.996" e_score="0.996"/>
          <exon-intron don_prob="0.357" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.883" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.918" e_score="0.987"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.074" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="71317" e_stop="70263" e_length="1055"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.996">
            <gDNA_intron_boundary i_start="70262" i_stop="69835" i_length="428"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69834" e_stop="69628" e_length="207"/>
          </exon>
          <intron i_serial="2" don_prob="0.357" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69627" i_stop="69538" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69537" e_stop="69438" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.883">
            <gDNA_intron_boundary i_start="69437" i_stop="69047" i_length="391"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="68964" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68963" i_stop="68877" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68876" e_stop="68820" e_length="57"/>
          </exon>
          <intron i_serial="5" don_prob="0.949" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68819" i_stop="68740" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="68739" e_stop="68587" e_length="153"/>
          </exon>
          <intron i_serial="6" don_prob="0.885" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68586" i_stop="67955" i_length="632"/>
          </intron>
          <exon e_serial="7" e_score="0.987">
            <gDNA_exon_boundary e_start="67954" e_stop="67876" e_length="79"/>
          </exon>
          <intron i_serial="7" don_prob="0.843" acc_prob="0.918">
            <gDNA_intron_boundary i_start="67875" i_stop="67737" i_length="139"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="67736" e_stop="67588" e_length="149"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67587" i_stop="67510" i_length="78"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="67509" e_stop="67375" e_length="135"/>
          </exon>
          <intron i_serial="9" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="67374" i_stop="67269" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="67268" e_stop="67155" e_length="114"/>
          </exon>
          <intron i_serial="10" don_prob="0.889" acc_prob="0.996">
            <gDNA_intron_boundary i_start="67154" i_stop="67007" i_length="148"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="67006" e_stop="66896" e_length="111"/>
          </exon>
          <intron i_serial="11" don_prob="0.992" acc_prob="0.797">
            <gDNA_intron_boundary i_start="66895" i_stop="66804" i_length="92"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="66803" e_stop="66695" e_length="109"/>
          </exon>
          <intron i_serial="12" don_prob="0.074" acc_prob="0.998">
            <gDNA_intron_boundary i_start="66694" i_stop="66265" i_length="430"/>
          </intron>
          <exon e_serial="13" e_score="0.995">
            <gDNA_exon_boundary e_start="66264" e_stop="66052" e_length="213"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71317" stop="70263"/>
              <exon start="69834" stop="69628"/>
              <exon start="69537" stop="69438"/>
              <exon start="69046" stop="68964"/>
              <exon start="68876" stop="68820"/>
              <exon start="68739" stop="68587"/>
              <exon start="67954" stop="67876"/>
              <exon start="67736" stop="67588"/>
              <exon start="67509" stop="67375"/>
              <exon start="67268" stop="67155"/>
              <exon start="67006" stop="66896"/>
              <exon start="66803" stop="66695"/>
              <exon start="66264" stop="66052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGAGAAACCTAAAAGATAACTACCCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAGGTAAAGAGTTGTCAAGATTCCATTTTTGTAGTTTATTGTGTTTGTAATCTTGGGTTTCCAGCAATTTAAAGAAAAAAAGATTCAATCTTTTTAATTTATCAGTATTTTGGCAGCTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGGGAAGAAGAGGGGGTACTGTTTCCAATTTGAAAGCAGTTGTAGATGTAGACAAAAGAGTGGAGAGCTATGGCAGTAGTGATGTAGAAGGAAATGAGAGTGGCAGCTATGATGCCATTGTTATAGGTTCAGGAATAGGTGGATTGGTGGCAGCGACGCAGCTGGCGGTTAAGGGAGCTAAGGTTTTAGTTCTGGAGAAGTATGTTATTCCTGGTGGAAGCTCTGGCTTTTACGAGAGGGATGGTTATAAGTTTGATGTTGGTTCATCAGTGATGTTTGGATTCAGTGATAAG : GGAAACCTCAATTTAATTACTCAAGCATTGGCAGCAGTAGGACGTAAATTAGAAGTTATACCTGACCCAACAACTGTACATTTCCACCTGCCAAATGACCTTTCTGTTCGTATACACCGAGAGTATGATGACTTCATTGAAGAGCTTGTGAGTAAATTTCCACATGAAAAGGAAGGGATTATCAAATTTTACAGTGAATGCTGGAAG : ATCTTTAATTCTCTGAATTCATTGGAACTGAAGTCTTTGGAGGAACCCATCTACCTTTTTGGCCAGTTCTTTAAGAAGCCCCTTGAATGCTTGACTCTTG : CCTACTATTTGCCCCAGAATGCTGGTAGCATCGCTCGGAAGTATATAAGAGATCCTGGGTTGCTGTCTTTTATAGATGCAGAG : TGCTTTATCGTGAGTACAGTTAATGCATTACAAACACCAATGATCAATGCAAGCATG : GTTCTATGTGACAGACATTTTGGCGGAATCAACTACCCCGTTGGTGGAGTTGGCGAGATCGCCAAATCCTTAGCAAAAGGCTTGGATGATCACGGAAGTCAGATACTTTATAGGGCAAATGTTACAAGTATCATTTTGGACAATGGCAAAGCT : GTGGGAGTGAAGCTTTCTGACGGGAGGAAGTTTTATGCTAAAACCATAGTATCGAATGCTACCAGATGGGATACTTTTG : GAAAGCTTTTAAAAGCTGAGAATCTGCCAAAAGAAGAAGAAAATTTCCAGAAAGCTTATGTAAAAGCACCTTCTTTTCTTTCTATTCATATGGGAGTTAAAGCAGATGTACTCCCACCAGACACAGATTGTCACCATTTTGTCCTCGAG : GATGATTGGACAAATTTGGAGAAACCATATGGAAGTATATTCTTGAGTATTCCAACAGTTCTTGATTCCTCATTGGCCCCAGAAGGACACCATATTCTTCACATTTTTACAACATCGAGCATTGAAGATTGGGAG : GGACTCTCTCCGAAAGACTATGAAGCGAAGAAAGAGGTTGTTGCTGAAAGGATTATAAGCAGACTTGAAAAAACACTCTTCCCAGGGCTTAAGTCATCTATTCTCTTTAAGGAG : GTGGGAACTCCAAAGACCCACAGACGATACCTTGCTCGTGATAGTGGTACCTATGGACCAATGCCACGCGGAACACCTAAGGGACTCCTGGGAATGCCTTTCAATACCACT : GCTATAGATGGTCTATATTGTGTTGGCGATAGTTGCTTCCCAGGACAAGGTGTTATAGCTGTAGCCTTTTCAGGAGTAATGTGCGCTCATCGTGTTGCAGCTGACTTAG : GGTTTGAAAAAAAATCAGATGTGCTGGACAGTGCTCTTCTTAGACTACTTGGTTGGTTAAGGACACTAGCATGATATCTACTTGTTAAGCTAAAAAGAAACATTTGACACAAAAAAAGAAAGTTCATTATGTATTTACTTTTTCTTTATATCAATAAACTGGAAAATGAGGTTCCAATTGAGGTTCCTCCAGTATAGAAATCACAGATTTTAA</gDNA_template>
            <first_frame> I  G  E  T  *  K  I  T  T  H  *  P  K  P  A  S  T  K  N  L  A  S  K  K  I  P  Y  C  L  I  P  L  *  I  T  K  V  E  S  C  Q  S  T  S  L  S  I  S  S  T  T  N  K  G  R  T  L  H  F  A  H  T  H  L  I  K  I  H  L  N  T  S  L  T  L  L  N  H  L  Y  S  L  R  I  V  K  I  P  F  L  *  L  L  V  S  V  I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  R  *  R  V  V  K  I  P  F  L  *  F  I  V  F  V  I  L  G  F  Q  Q  F  K  E  K  K  I  Q  S  F  *  F  I  S  I  L  A  A  A  E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G  G  W  T  R  L  R  E  E  E  G  V  L  F  P  I  *  K  Q  L  *  M  *  T  K  E  W  R  A  M  A  V  V  M  *  K  E  M  R  V  A  A  M  M  P  L  L  *  V  Q  E  *  V  D  W  W  Q  R  R  S  W  R  L  R  E  L  R  F  *  F  W  R  S  M  L  F  L  V  E  A  L  A  F  T  R  G  M  V  I  S  L  M  L  V  H  Q  *  C  L  D  S  V  I  R :   E  T  S  I  *  L  L  K  H  W  Q  Q  *  D  V  N  *  K  L  Y  L  T  Q  Q  L  Y  I  S  T  C  Q  M  T  F  L  F  V  Y  T  E  S  M  M  T  S  L  K  S  L  *  V  N  F  H  M  K  R  K  G  L  S  N  F  T  V  N  A  G  R :   S  L  I  L  *  I  H  W  N  *  S  L  W  R  N  P  S  T  F  L  A  S  S  L  R  S  P  L  N  A  *  L  L  :  P  T  I  C  P  R  M  L  V  A  S  L  G  S  I  *  E  I  L  G  C  C  L  L  *  M  Q  S :   A  L  S  *  V  Q  L  M  H  Y  K  H  Q  *  S  M  Q  A  W :   F  Y  V  T  D  I  L  A  E  S  T  T  P  L  V  E  L  A  R  S  P  N  P  *  Q  K  A  W  M  I  T  E  V  R  Y  F  I  G  Q  M  L  Q  V  S  F  W  T  M  A  K  L :   W  E  *  S  F  L  T  G  G  S  F  M  L  K  P  *  Y  R  M  L  P  D  G  I  L  L  :  E  S  F  *  K  L  R  I  C  Q  K  K  K  K  I  S  R  K  L  M  *  K  H  L  L  F  F  L  F  I  W  E  L  K  Q  M  Y  S  H  Q  T  Q  I  V  T  I  L  S  S  R :   M  I  G  Q  I  W  R  N  H  M  E  V  Y  S  *  V  F  Q  Q  F  L  I  P  H  W  P  Q  K  D  T  I  F  F  T  F  L  Q  H  R  A  L  K  I  G  R :   D  S  L  R  K  T  M  K  R  R  K  R  L  L  L  K  G  L  *  A  D  L  K  K  H  S  S  Q  G  L  S  H  L  F  S  L  R  R :   W  E  L  Q  R  P  T  D  D  T  L  L  V  I  V  V  P  M  D  Q  C  H  A  E  H  L  R  D  S  W  E  C  L  S  I  P  L :   L  *  M  V  Y  I  V  L  A  I  V  A  S  Q  D  K  V  L  *  L  *  P  F  Q  E  *  C  A  L  I  V  L  Q  L  T  *  :  G  L  K  K  N  Q  M  C  W  T  V  L  F  L  D  Y  L  V  G  *  G  H  *  H  D  I  Y  L  L  S  *  K  E  T  F  D  T  K  K  E  S  S  L  C  I  Y  F  F  F  I  S  I  N  W  K  M  R  F  Q  L  R  F  L  Q  Y  R  N  H  R  F  * </first_frame>
            <second_frame>  *  E  K  P  K  R  *  L  P  I  N  Q  S  Q  Q  A  P  K  I  W  P  A  K  K  Y  H  I  V  S  F  H  F  E  S  Q  K  *  N  H  A  N  P  L  L  F  P  F  Q  A  L  Q  T  R  E  E  P  F  T  L  L  I  P  T  S  S  K  S  T  *  I  L  L  S  L  C  S  I  I  Y  I  A  *  E  L  S  R  F  H  F  Y  S  C  W  C  L  *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R  G  K  E  L  S  R  F  H  F  C  S  L  L  C  L  *  S  W  V  S  S  N  L  K  K  K  R  F  N  L  F  N  L  S  V  F  W  Q  L  Q  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  G  G  Q  G  *  G  K  K  R  G  Y  C  F  Q  F  E  S  S  C  R  C  R  Q  K  S  G  E  L  W  Q  *  *  C  R  R  K  *  E  W  Q  L  *  C  H  C  Y  R  F  R  N  R  W  I  G  G  S  D  A  A  G  G  *  G  S  *  G  F  S  S  G  E  V  C  Y  S  W  W  K  L  W  L  L  R  E  G  W  L  *  V  *  C  W  F  I  S  D  V  W  I  Q  *  *   : G  K  P  Q  F  N  Y  S  S  I  G  S  S  R  T  *  I  R  S  Y  T  *  P  N  N  C  T  F  P  P  A  K  *  P  F  C  S  Y  T  P  R  V  *  *  L  H  *  R  A  C  E  *  I  S  T  *  K  G  R  D  Y  Q  I  L  Q  *  M  L  E   : D  L  *  F  S  E  F  I  G  T  E  V  F  G  G  T  H  L  P  F  W  P  V  L  *  E  A  P  *  M  L  D  S  C :   L  L  F  A  P  E  C  W  *  H  R  S  E  V  Y  K  R  S  W  V  A  V  F  Y  R  C  R   : V  L  Y  R  E  Y  S  *  C  I  T  N  T  N  D  Q  C  K  H   : G  S  M  *  Q  T  F  W  R  N  Q  L  P  R  W  W  S  W  R  D  R  Q  I  L  S  K  R  L  G  *  S  R  K  S  D  T  L  *  G  K  C  Y  K  Y  H  F  G  Q  W  Q  S   : C  G  S  E  A  F  *  R  E  E  V  L  C  *  N  H  S  I  E  C  Y  Q  M  G  Y  F  W :   K  A  F  K  S  *  E  S  A  K  R  R  R  K  F  P  E  S  L  C  K  S  T  F  F  S  F  Y  S  Y  G  S  *  S  R  C  T  P  T  R  H  R  L  S  P  F  C  P  R   : G  *  L  D  K  F  G  E  T  I  W  K  Y  I  L  E  Y  S  N  S  S  *  F  L  I  G  P  R  R  T  P  Y  S  S  H  F  Y  N  I  E  H  *  R  L  G   : G  T  L  S  E  R  L  *  S  E  E  R  G  C  C  *  K  D  Y  K  Q  T  *  K  N  T  L  P  R  A  *  V  I  Y  S  L  *  G   : G  G  N  S  K  D  P  Q  T  I  P  C  S  *  *  W  Y  L  W  T  N  A  T  R  N  T  *  G  T  P  G  N  A  F  Q  Y  H   : C  Y  R  W  S  I  L  C  W  R  *  L  L  P  R  T  R  C  Y  S  C  S  L  F  R  S  N  V  R  S  S  C  C  S  *  L  R :   V  *  K  K  I  R  C  A  G  Q  C  S  S  *  T  T  W  L  V  K  D  T  S  M  I  S  T  C  *  A  K  K  K  H  L  T  Q  K  K  K  V  H  Y  V  F  T  F  S  L  Y  Q  *  T  G  K  *  G  S  N  *  G  S  S  S  I  E  I  T  D  F   </second_frame>
            <third_frame>   R  R  N  L  K  D  N  Y  P  L  T  K  A  S  K  H  Q  K  F  G  Q  Q  K  N  T  I  L  S  H  S  T  L  N  H  K  S  R  I  M  P  I  H  F  S  F  H  F  K  H  Y  K  Q  G  K  N  P  S  L  C  S  Y  P  P  H  Q  N  P  P  K  Y  F  S  H  F  A  Q  S  S  I  *  P  K  N  C  Q  D  S  I  F  I  V  V  G  V  C  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  V  K  S  C  Q  D  S  I  F  V  V  Y  C  V  C  N  L  G  F  P  A  I  *  R  K  K  D  S  I  F  L  I  Y  Q  Y  F  G  S  C  R  S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G  V  D  K  A  K  G  R  R  G  G  T  V  S  N  L  K  A  V  V  D  V  D  K  R  V  E  S  Y  G  S  S  D  V  E  G  N  E  S  G  S  Y  D  A  I  V  I  G  S  G  I  G  G  L  V  A  A  T  Q  L  A  V  K  G  A  K  V  L  V  L  E  K  Y  V  I  P  G  G  S  S  G  F  Y  E  R  D  G  Y  K  F  D  V  G  S  S  V  M  F  G  F  S  D  K  :  G  N  L  N  L  I  T  Q  A  L  A  A  V  G  R  K  L  E  V  I  P  D  P  T  T  V  H  F  H  L  P  N  D  L  S  V  R  I  H  R  E  Y  D  D  F  I  E  E  L  V  S  K  F  P  H  E  K  E  G  I  I  K  F  Y  S  E  C  W  K  :  I  F  N  S  L  N  S  L  E  L  K  S  L  E  E  P  I  Y  L  F  G  Q  F  F  K  K  P  L  E  C  L  T  L   : A  Y  Y  L  P  Q  N  A  G  S  I  A  R  K  Y  I  R  D  P  G  L  L  S  F  I  D  A  E  :  C  F  I  V  S  T  V  N  A  L  Q  T  P  M  I  N  A  S  M  :  V  L  C  D  R  H  F  G  G  I  N  Y  P  V  G  G  V  G  E  I  A  K  S  L  A  K  G  L  D  D  H  G  S  Q  I  L  Y  R  A  N  V  T  S  I  I  L  D  N  G  K  A  :  V  G  V  K  L  S  D  G  R  K  F  Y  A  K  T  I  V  S  N  A  T  R  W  D  T  F   : G  K  L  L  K  A  E  N  L  P  K  E  E  E  N  F  Q  K  A  Y  V  K  A  P  S  F  L  S  I  H  M  G  V  K  A  D  V  L  P  P  D  T  D  C  H  H  F  V  L  E  :  D  D  W  T  N  L  E  K  P  Y  G  S  I  F  L  S  I  P  T  V  L  D  S  S  L  A  P  E  G  H  H  I  L  H  I  F  T  T  S  S  I  E  D  W  E  :  G  L  S  P  K  D  Y  E  A  K  K  E  V  V  A  E  R  I  I  S  R  L  E  K  T  L  F  P  G  L  K  S  S  I  L  F  K  E  :  V  G  T  P  K  T  H  R  R  Y  L  A  R  D  S  G  T  Y  G  P  M  P  R  G  T  P  K  G  L  L  G  M  P  F  N  T  T  :  A  I  D  G  L  Y  C  V  G  D  S  C  F  P  G  Q  G  V  I  A  V  A  F  S  G  V  M  C  A  H  R  V  A  A  D  L   : G  F  E  K  K  S  D  V  L  D  S  A  L  L  R  L  L  G  W  L  R  T  L  A  *  Y  L  L  V  K  L  K  R  N  I  *  H  K  K  R  K  F  I  M  Y  L  L  F  L  Y  I  N  K  L  E  N  E  V  P  I  E  V  P  P  V  *  K  S  Q  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70263"/>
                    <exon start="69834" stop="69628"/>
                    <exon start="69537" stop="69438"/>
                    <exon start="69046" stop="68964"/>
                    <exon start="68876" stop="68820"/>
                    <exon start="68739" stop="68587"/>
                    <exon start="67954" stop="67876"/>
                    <exon start="67736" stop="67588"/>
                    <exon start="67509" stop="67375"/>
                    <exon start="67268" stop="67155"/>
                    <exon start="67006" stop="66896"/>
                    <exon start="66803" stop="66695"/>
                    <exon start="66264" stop="66191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1896</number_coding_nucleotides>
                  <number_encoded_amino_acids>632</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWGVDKAKGRRGGTVSNLKAVVDVDKRVESYGSSDVEGNESGSYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGFYERDGYKFDVGSSVMFGFSDKGNLNLITQALAAVGRKLEVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSKFPHEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNAGSIARKYIRDPGLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVKLSDGRKFYAKTIVSNATRWDTFGKLLKAENLPKEEENFQKAYVKAPSFLSIHMGVKADVLPPDTDCHHFVLEDDWTNLEKPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSIEDWEGLSPKDYEAKKEVVAERIISRLEKTLFPGLKSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDSALLRLLGWLRTLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71315" stop="71076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNLKDNYPLTKASKHQKFGQQKNTILSHSTLNHKSRIMPIHFSFHFKHYKQGKNPSLCSYPPHQNPPKYFSHFAQSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71317" e_stop="70956"/>
            <exon e_start="70842" e_stop="70553"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.890" e_score="0.994"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="71317" e_stop="70956" e_length="362"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.890">
            <gDNA_intron_boundary i_start="70955" i_stop="70843" i_length="113"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="70842" e_stop="70553" e_length="290"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71317" stop="70956"/>
              <exon start="70842" stop="70553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584988" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGGAGAAACCTAAAAGATAACTACCCATTAACCAAAGCCAGCAAGCACCAAAAATTTGGCCAGCAAAAAAATACCATATTGTCTCATTCCACTTTGAATCACAAAAGTAGAATCATGCCAATCCACTTCTCTTTCCATTTCAAGCACTACAAACAAGGGAAGAACCCTTCACTTTGCTCATACCCACCTCATCAAAATCCACCTAAATACTTCTCTCACTTTGCTCAATCATCTATATAGCCTAAGAATTGTCAAGATTCCATTTTTATAGTTGTTGGTGTCTGTAATCTTGGAATTTGAACAATTTAAAGTGAAAAGATTCAAGTTTTTAGAATTTTCTCTGCTTTTGCAGTTGCAGAG : CTGCAGAAGTAAAGAATTGGATAGCTTGAAACCCACAAGGCAAAAGTTCTAGTCTTGTTTGGTTAACTTTCCAGGGAGCCCAAAATTTTGTGAAATAAGAGAAATGTGTACCTTGAGTTTTATGTATCCTAATTCACTTCTTGATGGTACCTGCAAGACTGTAGCTTTGGGTGATAGCAAACCAAGATACAATAAACAGAGAAGTTCTTGTTTTGACCCTTTGATAATTGGAAATTGTACTGATCAGCAGCAGCTTTGTGGCTTGAGTTGGGGGGTGGACAAGGCTAAGG</gDNA_template>
            <first_frame> I  G  E  T  *  K  I  T  T  H  *  P  K  P  A  S  T  K  N  L  A  S  K  K  I  P  Y  C  L  I  P  L  *  I  T  K  V  E  S  C  Q  S  T  S  L  S  I  S  S  T  T  N  K  G  R  T  L  H  F  A  H  T  H  L  I  K  I  H  L  N  T  S  L  T  L  L  N  H  L  Y  S  L  R  I  V  K  I  P  F  L  *  L  L  V  S  V  I  L  E  F  E  Q  F  K  V  K  R  F  K  F  L  E  F  S  L  L  L  Q  L  Q  S :   C  R  S  K  E  L  D  S  L  K  P  T  R  Q  K  F  *  S  C  L  V  N  F  P  G  S  P  K  F  C  E  I  R  E  M  C  T  L  S  F  M  Y  P  N  S  L  L  D  G  T  C  K  T  V  A  L  G  D  S  K  P  R  Y  N  K  Q  R  S  S  C  F  D  P  L  I  I  G  N  C  T  D  Q  Q  Q  L  C  G  L  S  W  G  V  D  K  A  K  </first_frame>
            <second_frame>  *  E  K  P  K  R  *  L  P  I  N  Q  S  Q  Q  A  P  K  I  W  P  A  K  K  Y  H  I  V  S  F  H  F  E  S  Q  K  *  N  H  A  N  P  L  L  F  P  F  Q  A  L  Q  T  R  E  E  P  F  T  L  L  I  P  T  S  S  K  S  T  *  I  L  L  S  L  C  S  I  I  Y  I  A  *  E  L  S  R  F  H  F  Y  S  C  W  C  L  *  S  W  N  L  N  N  L  K  *  K  D  S  S  F  *  N  F  L  C  F  C  S  C  R   : A  A  E  V  K  N  W  I  A  *  N  P  Q  G  K  S  S  S  L  V  W  L  T  F  Q  G  A  Q  N  F  V  K  *  E  K  C  V  P  *  V  L  C  I  L  I  H  F  L  M  V  P  A  R  L  *  L  W  V  I  A  N  Q  D  T  I  N  R  E  V  L  V  L  T  L  *  *  L  E  I  V  L  I  S  S  S  F  V  A  *  V  G  G  W  T  R  L  R </second_frame>
            <third_frame>   R  R  N  L  K  D  N  Y  P  L  T  K  A  S  K  H  Q  K  F  G  Q  Q  K  N  T  I  L  S  H  S  T  L  N  H  K  S  R  I  M  P  I  H  F  S  F  H  F  K  H  Y  K  Q  G  K  N  P  S  L  C  S  Y  P  P  H  Q  N  P  P  K  Y  F  S  H  F  A  Q  S  S  I  *  P  K  N  C  Q  D  S  I  F  I  V  V  G  V  C  N  L  G  I  *  T  I  *  S  E  K  I  Q  V  F  R  I  F  S  A  F  A  V  A  E  :  L  Q  K  *  R  I  G  *  L  E  T  H  K  A  K  V  L  V  L  F  G  *  L  S  R  E  P  K  I  L  *  N  K  R  N  V  Y  L  E  F  Y  V  S  *  F  T  S  *  W  Y  L  Q  D  C  S  F  G  *  *  Q  T  K  I  Q  *  T  E  K  F  L  F  *  P  F  D  N  W  K  L  Y  *  S  A  A  A  L  W  L  E  L  G  G  G  Q  G  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70790" stop="70554"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCLVNFPGSPKFCEIREMCTLSFMYPNSLLDGTCKTVALGDSKPRYNKQRSSCFDPLIIGNCTDQQQLCGLSWGVDKAK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71315" stop="71076"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRNLKDNYPLTKASKHQKFGQQKNTILSHSTLNHKSRIMPIHFSFHFKHYKQGKNPSLCSYPPHQNPPKYFSHFAQSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="71902" PGL_stop="77848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71902" e_stop="72043"/>
            <exon e_start="73912" e_stop="73994"/>
            <exon e_start="74061" e_stop="74360"/>
            <exon e_start="74529" e_stop="74630"/>
            <exon e_start="74797" e_stop="74991"/>
            <exon e_start="75090" e_stop="75380"/>
            <exon e_start="75860" e_stop="76046"/>
            <exon e_start="77395" e_stop="77441"/>
            <exon e_start="77531" e_stop="77848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.916" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.859" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71902" e_stop="72043" e_length="142"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72044" i_stop="73911" i_length="1868"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="73912" e_stop="73994" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.916">
            <gDNA_intron_boundary i_start="73995" i_stop="74060" i_length="66"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74061" e_stop="74360" e_length="300"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.912">
            <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74529" e_stop="74630" e_length="102"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="74797" e_stop="74991" e_length="195"/>
          </exon>
          <intron i_serial="5" don_prob="0.748" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="75090" e_stop="75380" e_length="291"/>
          </exon>
          <intron i_serial="6" don_prob="0.859" acc_prob="0.991">
            <gDNA_intron_boundary i_start="75381" i_stop="75859" i_length="479"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="75860" e_stop="76046" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="0.929" acc_prob="0.998">
            <gDNA_intron_boundary i_start="76047" i_stop="77394" i_length="1348"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77395" e_stop="77441" e_length="47"/>
          </exon>
          <intron i_serial="8" don_prob="0.916" acc_prob="0.000">
            <gDNA_intron_boundary i_start="77442" i_stop="77530" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="77531" e_stop="77848" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71902" stop="72043"/>
              <exon start="73912" stop="73994"/>
              <exon start="74061" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75380"/>
              <exon start="75860" stop="76046"/>
              <exon start="77395" stop="77441"/>
              <exon start="77531" stop="77848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575212" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGGTTAGCTTTGTGCTTACAAAAGAAGCGCCAAACAATTTGGATCCACATGGCTATACGCAATTAACTGTCTTTTGCCTATTTGCGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAG : GTTGAAGCCAATTTACATCAATCATGGATAGGCTAACCAGTGCTGCACGTCTCATGATAGTCTCGGATCTTGACCATACAATG : GTAGATCATCATGATTCCGAGAACCTTTCTCTGCTTAGGTTCAATGCTTTATGGGAGGCCAATTATCGTGATAACTCTTTGTTAGTGTTCTCTACTGGGAGATCACCTACACTATACAAGGAATTGAGGAAAGAAAAGCCCATGCTAACCCCAGATATTACAATTATGTCTGTGGGAACTGAAATAACATATGGTAACGCTATGGTGCCTGATGATGGTTGGGAAACTTTTCTGAATAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG : TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG : CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG : GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTGGTCATTTCAACCTAGGTCCAAGTACCTCCCCAAGAGATGTTACAGATTTATCAGATTGCAAGATGGACAACTTTGTTCCTGCCTATGAAGTTGTCAAATTTTACCTGTTTTTTGAGAAATGGAGGCGTGGAGAAATTGAGCATTCTGAGCATTATCTGTCAAACCTGAAAGCAGTGTGT : AGACCATCTGGTACTTTTGTTCACCCATCTGGTGTTGAGAAATCCCTTCAGGAATGTGTAACTACATTCGGAACATGTCATGCTGACAAACATGGGAAACAATATCGTGTTTGGGTCGATCAAGTTTTACCTTCACAGGTTGGTTCAGACTCATGGTTAGTGAGTTTCAAGAAGTGGGAGCTCTCTG : GTGAAAACAGGCGATGCTGCATAACTACAGTCCTATTAAGTTCAAAG : AATAAGACTGTTGCAGACGGGCTCACTTGGACTCACGTACATCAGACATGGCTGCACGACGATGCATCAAGTGACTCCGCGTCCTGGTTCTTTTAGATTGCCTTTCTCAGTGTATTAACTCTGAAAACTCAGCACCCCTTTTACCAGTTTCACACCCAGAATAAACACAATATACAAACTATAGTTGATAATCAATGTATTAACTTTCTCCTCCTTTGATAATCAATTATTACCATCTAAACCAGTGAAGATGGCTTTGCCTTTTTTGTGTAGTATAAAGAATTATATTAATATCTATAGTTCTTCTATTTGATTCAG</gDNA_template>
            <first_frame> I  G  L  A  L  C  L  Q  K  K  R  Q  T  I  W  I  H  M  A  I  R  N  *  L  S  F  A  Y  L  R  S  L  Y  T  Q  K  I  H  F  F  V  S  P  N  P  I  S   : G  *  S  Q  F  T  S  I  M  D  R  L  T  S  A  A  R  L  M  I  V  S  D  L  D  H  T  M  :  V  D  H  H  D  S  E  N  L  S  L  L  R  F  N  A  L  W  E  A  N  Y  R  D  N  S  L  L  V  F  S  T  G  R  S  P  T  L  Y  K  E  L  R  K  E  K  P  M  L  T  P  D  I  T  I  M  S  V  G  T  E  I  T  Y  G  N  A  M  V  P  D  D  G  W  E  T  F  L  N  N  K  W  D  R  K  I  V  T  E  E  T  S  K  F  P  E  L  S  L  Q  :  S  E  T  E  Q  R  P  H  K  V  S  F  Y  V  Q  K  E  K  A  Q  D  I  M  K  T  L  S  K  R  L  K  E  R  G  :  L  D  V  K  I  I  Y  S  G  G  M  D  L  D  I  L  P  Q  G  A  G  K  G  Q  A  L  A  Y  L  L  K  K  L  K  S  E  G  K  L  P  S  N  T  L  A  C  G  D  S  G  N  D  A  E  L  F  S  I  P  D  V  Y  G  V  M  :  V  A  N  A  Q  E  E  L  L  Q  W  H  A  A  N  A  K  N  N  P  K  V  I  H  A  S  E  R  C  A  A  G  I  I  Q  A  I  G  H  F  N  L  G  P  S  T  S  P  R  D  V  T  D  L  S  D  C  K  M  D  N  F  V  P  A  Y  E  V  V  K  F  Y  L  F  F  E  K  W  R  R  G  E  I  E  H  S  E  H  Y  L  S  N  L  K  A  V  C  :  R  P  S  G  T  F  V  H  P  S  G  V  E  K  S  L  Q  E  C  V  T  T  F  G  T  C  H  A  D  K  H  G  K  Q  Y  R  V  W  V  D  Q  V  L  P  S  Q  V  G  S  D  S  W  L  V  S  F  K  K  W  E  L  S   : G  E  N  R  R  C  C  I  T  T  V  L  L  S  S  K  :  N  K  T  V  A  D  G  L  T  W  T  H  V  H  Q  T  W  L  H  D  D  A  S  S  D  S  A  S  W  F  F  *  I  A  F  L  S  V  L  T  L  K  T  Q  H  P  F  Y  Q  F  H  T  Q  N  K  H  N  I  Q  T  I  V  D  N  Q  C  I  N  F  L  L  L  *  *  S  I  I  T  I  *  T  S  E  D  G  F  A  F  F  V  *  Y  K  E  L  Y  *  Y  L  *  F  F  Y  L  I  Q </first_frame>
            <second_frame>  L  G  *  L  C  A  Y  K  R  S  A  K  Q  F  G  S  T  W  L  Y  A  I  N  C  L  L  P  I  C  D  L  F  T  P  K  R  F  I  F  L  F  P  Q  I  Q  F  Q  :  V  E  A  N  L  H  Q  S  W  I  G  *  P  V  L  H  V  S  *  *  S  R  I  L  T  I  Q  W :   *  I  I  M  I  P  R  T  F  L  C  L  G  S  M  L  Y  G  R  P  I  I  V  I  T  L  C  *  C  S  L  L  G  D  H  L  H  Y  T  R  N  *  G  K  K  S  P  C  *  P  Q  I  L  Q  L  C  L  W  E  L  K  *  H  M  V  T  L  W  C  L  M  M  V  G  K  L  F  *  I  T  S  G  I  E  R  *  *  Q  R  R  Q  A  S  F  L  N  S  V  C  S :   Q  K  Q  S  S  D  H  T  K  S  V  S  M  F  R  K  R  K  L  K  I  *  *  K  L  F  P  S  A  *  K  N  V  G :   W  M  S  K  *  F  T  V  E  G  W  I  *  I  S  Y  H  K  V  L  A  K  D  K  H  L  H  I  C  L  R  N  *  R  A  R  E  N  Y  Q  A  T  P  L  P  A  V  T  P  G  M  T  L  S  Y  S  V  S  Q  M  C  M  V  *  W :   *  L  M  R  R  R  N  Y  C  S  G  M  L  Q  M  Q  K  I  I  P  K  *  F  M  H  Q  R  G  V  L  P  V  S  Y  K  P  L  V  I  S  T  *  V  Q  V  P  P  Q  E  M  L  Q  I  Y  Q  I  A  R  W  T  T  L  F  L  P  M  K  L  S  N  F  T  C  F  L  R  N  G  G  V  E  K  L  S  I  L  S  I  I  C  Q  T  *  K  Q  C  V :   D  H  L  V  L  L  F  T  H  L  V  L  R  N  P  F  R  N  V  *  L  H  S  E  H  V  M  L  T  N  M  G  N  N  I  V  F  G  S  I  K  F  Y  L  H  R  L  V  Q  T  H  G  *  *  V  S  R  S  G  S  S  L  :  V  K  T  G  D  A  A  *  L  Q  S  Y  *  V  Q  R :   I  R  L  L  Q  T  G  S  L  G  L  T  Y  I  R  H  G  C  T  T  M  H  Q  V  T  P  R  P  G  S  F  R  L  P  F  S  V  Y  *  L  *  K  L  S  T  P  F  T  S  F  T  P  R  I  N  T  I  Y  K  L  *  L  I  I  N  V  L  T  F  S  S  F  D  N  Q  L  L  P  S  K  P  V  K  M  A  L  P  F  L  C  S  I  K  N  Y  I  N  I  Y  S  S  S  I  *  F   </second_frame>
            <third_frame>   W  V  S  F  V  L  T  K  E  A  P  N  N  L  D  P  H  G  Y  T  Q  L  T  V  F  C  L  F  A  I  S  L  H  P  K  D  S  F  F  C  F  P  K  S  N  F  R :   L  K  P  I  Y  I  N  H  G  *  A  N  Q  C  C  T  S  H  D  S  L  G  S  *  P  Y  N   : G  R  S  S  *  F  R  E  P  F  S  A  *  V  Q  C  F  M  G  G  Q  L  S  *  *  L  F  V  S  V  L  Y  W  E  I  T  Y  T  I  Q  G  I  E  E  R  K  A  H  A  N  P  R  Y  Y  N  Y  V  C  G  N  *  N  N  I  W  *  R  Y  G  A  *  *  W  L  G  N  F  S  E  *  Q  V  G  *  K  D  S  N  R  G  D  K  Q  V  S  *  T  Q  S  A   : V  R  N  R  A  A  T  T  Q  S  Q  F  L  C  S  E  R  E  S  S  R  Y  N  E  N  S  F  Q  A  L  E  R  T  W   : A  G  C  Q  N  N  L  Q  W  R  D  G  S  R  Y  L  T  T  R  C  W  Q  R  T  S  T  C  I  S  A  *  E  T  E  E  R  G  K  I  T  K  Q  H  P  C  L  R  *  L  R  E  *  R  *  V  I  Q  Y  P  R  C  V  W  C  N   : G  S  *  C  A  G  G  I  T  A  V  A  C  C  K  C  K  K  *  S  Q  S  N  S  C  I  R  E  V  C  C  R  Y  H  T  S  H  W  S  F  Q  P  R  S  K  Y  L  P  K  R  C  Y  R  F  I  R  L  Q  D  G  Q  L  C  S  C  L  *  S  C  Q  I  L  P  V  F  *  E  M  E  A  W  R  N  *  A  F  *  A  L  S  V  K  P  E  S  S  V   : *  T  I  W  Y  F  C  S  P  I  W  C  *  E  I  P  S  G  M  C  N  Y  I  R  N  M  S  C  *  Q  T  W  E  T  I  S  C  L  G  R  S  S  F  T  F  T  G  W  F  R  L  M  V  S  E  F  Q  E  V  G  A  L  W :   *  K  Q  A  M  L  H  N  Y  S  P  I  K  F  K   : E  *  D  C  C  R  R  A  H  L  D  S  R  T  S  D  M  A  A  R  R  C  I  K  *  L  R  V  L  V  L  L  D  C  L  S  Q  C  I  N  S  E  N  S  A  P  L  L  P  V  S  H  P  E  *  T  Q  Y  T  N  Y  S  *  *  S  M  Y  *  L  S  P  P  L  I  I  N  Y  Y  H  L  N  Q  *  R  W  L  C  L  F  C  V  V  *  R  I  I  L  I  S  I  V  L  L  F  D  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73917" stop="73994"/>
                    <exon start="74061" stop="74360"/>
                    <exon start="74529" stop="74630"/>
                    <exon start="74797" stop="74991"/>
                    <exon start="75090" stop="75380"/>
                    <exon start="75860" stop="76046"/>
                    <exon start="77395" stop="77441"/>
                    <exon start="77531" stop="77626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1293</number_coding_nucleotides>
                  <number_encoded_amino_acids>431</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SQFTSIMDRLTSAARLMIVSDLDHTMVDHHDSENLSLLRFNALWEANYRDNSLLVFSTGRSPTLYKELRKEKPMLTPDITIMSVGTEITYGNAMVPDDGWETFLNNKWDRKIVTEETSKFPELSLQSETEQRPHKVSFYVQKEKAQDIMKTLSKRLKERGLDVKIIYSGGMDLDILPQGAGKGQALAYLLKKLKSEGKLPSNTLACGDSGNDAELFSIPDVYGVMVANAQEELLQWHAANAKNNPKVIHASERCAAGIIQAIGHFNLGPSTSPRDVTDLSDCKMDNFVPAYEVVKFYLFFEKWRRGEIEHSEHYLSNLKAVCRPSGTFVHPSGVEKSLQECVTTFGTCHADKHGKQYRVWVDQVLPSQVGSDSWLVSFKKWELSGENRRCCITTVLLSSKNKTVADGLTWTHVHQTWLHDDASSDSASWFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="76755" e_stop="77354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="76755" e_stop="77354" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76755" stop="77354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601138" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACCATACACGAAATCATCTGTTCCTTATCCTACTAAACTTCTAGAGCATACACCAAATCCACTGTTAAGCTCATACAAAACCTCTTCAAGCTTCAACTGTGGATAATGATAGTTGAAGCATAGAGAGTCGAGCATAGTAATGAGTCAAGCATTTAGCTTTTTCAGTTGAGCTTGTGTGAGGTTTAGGTGCCCCTGATCATTGGATTACAGTGCCTACACAGCTTTGGTCTGATAAGAAAGTCTAACCTCAATAGTCTTACCACCGAATACGCTCCCTATTTCCTATCTGATTTCACCGCAGGTAGTCAAGTTTAGGTAAACTATCATGCGTATTCCTGCTTTTGATGGGATGTGAGATGAGTTCATGTAATGTAGCTTCTGATATTTCATGCCGTTACTCCTTTCATAAGGTCGTTAATGGTCGGTCTGTACTGGATCAGCACAGTAGCGGAGCAGCTCCTGCATGCCTTTACCTGCAACAAATGGACTTAACTGTTAGTCTCTGAAGGAAAAAGGGGGCTGTCAATAAGTAACCATCAATTTGTTGCAAGCAGGATAATTAATGCTTATGCAACACTTGCATTTTCGATCTCATATT</gDNA_template>
            <first_frame> Q  P  Y  T  K  S  S  V  P  Y  P  T  K  L  L  E  H  T  P  N  P  L  L  S  S  Y  K  T  S  S  S  F  N  C  G  *  *  *  L  K  H  R  E  S  S  I  V  M  S  Q  A  F  S  F  F  S  *  A  C  V  R  F  R  C  P  *  S  L  D  Y  S  A  Y  T  A  L  V  *  *  E  S  L  T  S  I  V  L  P  P  N  T  L  P  I  S  Y  L  I  S  P  Q  V  V  K  F  R  *  T  I  M  R  I  P  A  F  D  G  M  *  D  E  F  M  *  C  S  F  *  Y  F  M  P  L  L  L  S  *  G  R  *  W  S  V  C  T  G  S  A  Q  *  R  S  S  S  C  M  P  L  P  A  T  N  G  L  N  C  *  S  L  K  E  K  G  G  C  Q  *  V  T  I  N  L  L  Q  A  G  *  L  M  L  M  Q  H  L  H  F  R  S  H  I </first_frame>
            <second_frame>  N  H  T  R  N  H  L  F  L  I  L  L  N  F  *  S  I  H  Q  I  H  C  *  A  H  T  K  P  L  Q  A  S  T  V  D  N  D  S  *  S  I  E  S  R  A  *  *  *  V  K  H  L  A  F  S  V  E  L  V  *  G  L  G  A  P  D  H  W  I  T  V  P  T  Q  L  W  S  D  K  K  V  *  P  Q  *  S  Y  H  R  I  R  S  L  F  P  I  *  F  H  R  R  *  S  S  L  G  K  L  S  C  V  F  L  L  L  M  G  C  E  M  S  S  C  N  V  A  S  D  I  S  C  R  Y  S  F  H  K  V  V  N  G  R  S  V  L  D  Q  H  S  S  G  A  A  P  A  C  L  Y  L  Q  Q  M  D  L  T  V  S  L  *  R  K  K  G  A  V  N  K  *  P  S  I  C  C  K  Q  D  N  *  C  L  C  N  T  C  I  F  D  L  I   </second_frame>
            <third_frame>   T  I  H  E  I  I  C  S  L  S  Y  *  T  S  R  A  Y  T  K  S  T  V  K  L  I  Q  N  L  F  K  L  Q  L  W  I  M  I  V  E  A  *  R  V  E  H  S  N  E  S  S  I  *  L  F  Q  L  S  L  C  E  V  *  V  P  L  I  I  G  L  Q  C  L  H  S  F  G  L  I  R  K  S  N  L  N  S  L  T  T  E  Y  A  P  Y  F  L  S  D  F  T  A  G  S  Q  V  *  V  N  Y  H  A  Y  S  C  F  *  W  D  V  R  *  V  H  V  M  *  L  L  I  F  H  A  V  T  P  F  I  R  S  L  M  V  G  L  Y  W  I  S  T  V  A  E  Q  L  L  H  A  F  T  C  N  K  W  T  *  L  L  V  S  E  G  K  R  G  L  S  I  S  N  H  Q  F  V  A  S  R  I  I  N  A  Y  A  T  L  A  F  S  I  S  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77062" stop="77262"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSLGKLSCVFLLLMGCEMSSCNVASDISCRYSFHKVVNGRSVLDQHSSGAAPACLYLQQMDLTVSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71989" e_stop="72837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="71989" e_stop="72837" e_length="849"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71989" stop="72837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587787" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGATCTCTTTACACCCAAAAGATTCATTTTTTTGTTTCCCCAAATCCAATTTCAGGTAACCCTTTTGCTCCCTCTTTACATTTTTGTACATTTCTGGTGATTAATTTGCGTGTATCTCGACTAATTTGTTTTTGAAAACTATATTGTGGGAATAGAGAAAAGATTAGTTTTTTTATATGTATGAAGTGTTGAATCCCTTTGTTATAGTGAAGTGGCAAAAGGGTGTTCAAGATTATGTTAGATCATAGGTTAAAATTTTAGGTGTAATGGGCCATATGTGTTAGTATTAGATTTGCTGCTGAGGATTAACTAATCTGTTCAACCTGTATTGGGATTTGAAGTAAGAATGCGGTTCTGAGTAGAATCTGATTGTCTCTGTATAAATTTGTGTATACTGAGGAAGATATGAGGATGAACTTGATTGAATTTTGGTGTTGGGTTGAGTTGATTTGGATTTTCTTTGGTGATTTTGGGTAAAAAATGTTATTTTGATTGATTCAGGACTCTAGACCTAGATCCCTTTTCGTGGGGTTTCTTTTATTCGTGAAGACTTGATGAGTAGTTATTGAATTTAGGAGTAGTAATCCAAGAATTGGCTTTGGAATGAAAAATGGAAGTTCTCGACATCCCATTTTACAGTCCCCTTTTTCTTGATCCTGTATTTGGGTTTCAGAGTTTAAGGATATAACCTAACTTGTCTTAAATTTTTCGCATTTACTGTACTGTGCACAACAGATAAGATGACAGATCTCCTCTGTAGAGAATTTGGTACTTTAACATGCTAGTTTGTGAATCTGTTAAATACTTGTCAAATTTAAGCTTGTTCAAGTAATATTTATCTTTAATTAA</gDNA_template>
            <first_frame> R  S  L  Y  T  Q  K  I  H  F  F  V  S  P  N  P  I  S  G  N  P  F  A  P  S  L  H  F  C  T  F  L  V  I  N  L  R  V  S  R  L  I  C  F  *  K  L  Y  C  G  N  R  E  K  I  S  F  F  I  C  M  K  C  *  I  P  L  L  *  *  S  G  K  R  V  F  K  I  M  L  D  H  R  L  K  F  *  V  *  W  A  I  C  V  S  I  R  F  A  A  E  D  *  L  I  C  S  T  C  I  G  I  *  S  K  N  A  V  L  S  R  I  *  L  S  L  Y  K  F  V  Y  T  E  E  D  M  R  M  N  L  I  E  F  W  C  W  V  E  L  I  W  I  F  F  G  D  F  G  *  K  M  L  F  *  L  I  Q  D  S  R  P  R  S  L  F  V  G  F  L  L  F  V  K  T  *  *  V  V  I  E  F  R  S  S  N  P  R  I  G  F  G  M  K  N  G  S  S  R  H  P  I  L  Q  S  P  F  S  *  S  C  I  W  V  S  E  F  K  D  I  T  *  L  V  L  N  F  S  H  L  L  Y  C  A  Q  Q  I  R  *  Q  I  S  S  V  E  N  L  V  L  *  H  A  S  L  *  I  C  *  I  L  V  K  F  K  L  V  Q  V  I  F  I  F  N  * </first_frame>
            <second_frame>  D  L  F  T  P  K  R  F  I  F  L  F  P  Q  I  Q  F  Q  V  T  L  L  L  P  L  Y  I  F  V  H  F  W  *  L  I  C  V  Y  L  D  *  F  V  F  E  N  Y  I  V  G  I  E  K  R  L  V  F  L  Y  V  *  S  V  E  S  L  C  Y  S  E  V  A  K  G  C  S  R  L  C  *  I  I  G  *  N  F  R  C  N  G  P  Y  V  L  V  L  D  L  L  L  R  I  N  *  S  V  Q  P  V  L  G  F  E  V  R  M  R  F  *  V  E  S  D  C  L  C  I  N  L  C  I  L  R  K  I  *  G  *  T  *  L  N  F  G  V  G  L  S  *  F  G  F  S  L  V  I  L  G  K  K  C  Y  F  D  *  F  R  T  L  D  L  D  P  F  S  W  G  F  F  Y  S  *  R  L  D  E  *  L  L  N  L  G  V  V  I  Q  E  L  A  L  E  *  K  M  E  V  L  D  I  P  F  Y  S  P  L  F  L  D  P  V  F  G  F  Q  S  L  R  I  *  P  N  L  S  *  I  F  R  I  Y  C  T  V  H  N  R  *  D  D  R  S  P  L  *  R  I  W  Y  F  N  M  L  V  C  E  S  V  K  Y  L  S  N  L  S  L  F  K  *  Y  L  S  L  I   </second_frame>
            <third_frame>   I  S  L  H  P  K  D  S  F  F  C  F  P  K  S  N  F  R  *  P  F  C  S  L  F  T  F  L  Y  I  S  G  D  *  F  A  C  I  S  T  N  L  F  L  K  T  I  L  W  E  *  R  K  D  *  F  F  Y  M  Y  E  V  L  N  P  F  V  I  V  K  W  Q  K  G  V  Q  D  Y  V  R  S  *  V  K  I  L  G  V  M  G  H  M  C  *  Y  *  I  C  C  *  G  L  T  N  L  F  N  L  Y  W  D  L  K  *  E  C  G  S  E  *  N  L  I  V  S  V  *  I  C  V  Y  *  G  R  Y  E  D  E  L  D  *  I  L  V  L  G  *  V  D  L  D  F  L  W  *  F  W  V  K  N  V  I  L  I  D  S  G  L  *  T  *  I  P  F  R  G  V  S  F  I  R  E  D  L  M  S  S  Y  *  I  *  E  *  *  S  K  N  W  L  W  N  E  K  W  K  F  S  T  S  H  F  T  V  P  F  F  L  I  L  Y  L  G  F  R  V  *  G  Y  N  L  T  C  L  K  F  F  A  F  T  V  L  C  T  T  D  K  M  T  D  L  L  C  R  E  F  G  T  L  T  C  *  F  V  N  L  L  N  T  C  Q  I  *  A  C  S  S  N  I  Y  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0021O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="80360" PGL_stop="79618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80360" e_stop="79618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="80360" e_stop="79618" e_length="743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80360" stop="79618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570582" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTCCCGTTATCTTTCTTTTTTATTTATTAAAAAGAAAGACAATGGCATCTTTTAACAAAATTATTATTGTATTTACCATTTCTTTATTCTTTACAACAATTCCTTCTAAGGCATATAATATTCAACCTAAACCCCATGCACCTTCCCATGCACCAATTAAACCATCCTCATCCTCGTCCTCGTCCTCGTCCTCTAAGGCAACTATTGAAATTCCGAAAAATATACCTATCGTCCCAAATACTAGAGATGTATCCGTATTTATCAACTCGATGATGGAAGCAACGATGGGAAAGACAGAAGAATTTATCGTGAATGTGATTGAACAACGTCTAGAGGAACCTGATACTGACATATACGCGACGGATTGTCTAGAGACATGTAAATCAGTGTATCAAGATGCTGTAGATGCAATGAAGAAAGCTGAAGAAGATGTGAAATCAAAAGAATATTATAAAGCAGATTTGGATATTAGTGCAATAACAACAGATATTGATACTTGCAATGAATGTGCTGTTTCAATATATGGAGAGGATACTGAATTTAGGCAATTTGATAATTGGATTCAAGGGGTTGCTACTGAGTGCCTTGATAAAATTAGTGCCTTAACTAAATAAATTTGATAAATATGTTGTTTTGAGATTAAATATGGAAAGACTTGGTGATGAAATCTTGTAACAACCAAAATATTTTAGGTTAACAAAAGGAACAACACACTATATGATAGTGTTTGATCTTTC</gDNA_template>
            <first_frame> F  F  F  P  L  S  F  F  F  I  Y  *  K  E  R  Q  W  H  L  L  T  K  L  L  L  Y  L  P  F  L  Y  S  L  Q  Q  F  L  L  R  H  I  I  F  N  L  N  P  M  H  L  P  M  H  Q  L  N  H  P  H  P  R  P  R  P  R  P  L  R  Q  L  L  K  F  R  K  I  Y  L  S  S  Q  I  L  E  M  Y  P  Y  L  S  T  R  *  W  K  Q  R  W  E  R  Q  K  N  L  S  *  M  *  L  N  N  V  *  R  N  L  I  L  T  Y  T  R  R  I  V  *  R  H  V  N  Q  C  I  K  M  L  *  M  Q  *  R  K  L  K  K  M  *  N  Q  K  N  I  I  K  Q  I  W  I  L  V  Q  *  Q  Q  I  L  I  L  A  M  N  V  L  F  Q  Y  M  E  R  I  L  N  L  G  N  L  I  I  G  F  K  G  L  L  L  S  A  L  I  K  L  V  P  *  L  N  K  F  D  K  Y  V  V  L  R  L  N  M  E  R  L  G  D  E  I  L  *  Q  P  K  Y  F  R  L  T  K  G  T  T  H  Y  M  I  V  F  D  L   </first_frame>
            <second_frame>  F  F  S  R  Y  L  S  F  L  F  I  K  K  K  D  N  G  I  F  *  Q  N  Y  Y  C  I  Y  H  F  F  I  L  Y  N  N  S  F  *  G  I  *  Y  S  T  *  T  P  C  T  F  P  C  T  N  *  T  I  L  I  L  V  L  V  L  V  L  *  G  N  Y  *  N  S  E  K  Y  T  Y  R  P  K  Y  *  R  C  I  R  I  Y  Q  L  D  D  G  S  N  D  G  K  D  R  R  I  Y  R  E  C  D  *  T  T  S  R  G  T  *  Y  *  H  I  R  D  G  L  S  R  D  M  *  I  S  V  S  R  C  C  R  C  N  E  E  S  *  R  R  C  E  I  K  R  I  L  *  S  R  F  G  Y  *  C  N  N  N  R  Y  *  Y  L  Q  *  M  C  C  F  N  I  W  R  G  Y  *  I  *  A  I  *  *  L  D  S  R  G  C  Y  *  V  P  *  *  N  *  C  L  N  *  I  N  L  I  N  M  L  F  *  D  *  I  W  K  D  L  V  M  K  S  C  N  N  Q  N  I  L  G  *  Q  K  E  Q  H  T  I  *  *  C  L  I  F  </second_frame>
            <third_frame>   F  F  P  V  I  F  L  F  Y  L  L  K  R  K  T  M  A  S  F  N  K  I  I  I  V  F  T  I  S  L  F  F  T  T  I  P  S  K  A  Y  N  I  Q  P  K  P  H  A  P  S  H  A  P  I  K  P  S  S  S  S  S  S  S  S  S  S  K  A  T  I  E  I  P  K  N  I  P  I  V  P  N  T  R  D  V  S  V  F  I  N  S  M  M  E  A  T  M  G  K  T  E  E  F  I  V  N  V  I  E  Q  R  L  E  E  P  D  T  D  I  Y  A  T  D  C  L  E  T  C  K  S  V  Y  Q  D  A  V  D  A  M  K  K  A  E  E  D  V  K  S  K  E  Y  Y  K  A  D  L  D  I  S  A  I  T  T  D  I  D  T  C  N  E  C  A  V  S  I  Y  G  E  D  T  E  F  R  Q  F  D  N  W  I  Q  G  V  A  T  E  C  L  D  K  I  S  A  L  T  K  *  I  *  *  I  C  C  F  E  I  K  Y  G  K  T  W  *  *  N  L  V  T  T  K  I  F  *  V  N  K  R  N  N  T  L  Y  D  S  V  *  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80358" stop="79741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFPVIFLFYLLKRKTMASFNKIIIVFTISLFFTTIPSKAYNIQPKPHAPSHAPIKPSSSSSSSSSSKATIEIPKNIPIVPNTRDVSVFINSMMEATMGKTEEFIVNVIEQRLEEPDTDIYATDCLETCKSVYQDAVDAMKKAEEDVKSKEYYKADLDISAITTDIDTCNECAVSIYGEDTEFRQFDNWIQGVATECLDKISALTK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="79618" PGL_stop="79789"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79618" e_stop="79789"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="79618" e_stop="79789" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79618" stop="79789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596912" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGATCAAACACTATCATATAGTGTGTTGTTCCTTTTGTTAACCTAAAATATTTTGGTTGTTACAAGATTTCATCACCAAGTCTTTCCATATTTAATCTCAAAACAACATATTTATCAAATTTATTTAGTTAAGGCACTAATTTTATCAAGGCACTCAGTAGCAACCCCT</gDNA_template>
            <first_frame> E  R  S  N  T  I  I  *  C  V  V  P  F  V  N  L  K  Y  F  G  C  Y  K  I  S  S  P  S  L  S  I  F  N  L  K  T  T  Y  L  S  N  L  F  S  *  G  T  N  F  I  K  A  L  S  S  N  P  </first_frame>
            <second_frame>  K  D  Q  T  L  S  Y  S  V  L  F  L  L  L  T  *  N  I  L  V  V  T  R  F  H  H  Q  V  F  P  Y  L  I  S  K  Q  H  I  Y  Q  I  Y  L  V  K  A  L  I  L  S  R  H  S  V  A  T  P </second_frame>
            <third_frame>   K  I  K  H  Y  H  I  V  C  C  S  F  C  *  P  K  I  F  W  L  L  Q  D  F  I  T  K  S  F  H  I  *  S  Q  N  N  I  F  I  K  F  I  *  L  R  H  *  F  Y  Q  G  T  Q  *  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0021O12.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="87405" PGL_stop="87953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87405" e_stop="87953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="87405" e_stop="87953" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87405" stop="87953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTCAAAATTTGAAATGAAAGCAACTTTTTTTCAACCTCTATTTAAAATTCAACTTCCCCACTCCACTCTCTCCAGATCTAAATCTCAATATCTCTCTCTTCCATGGCGATTCGAACTATCTACGGATTGATATTCTTAGCAACATCCAGCTTTTGCTTCATCTTCCTCTATCTCGCTCTTCAACCAATCTTCTATTTCACCTCCTAACACCGCCGGCGGTGCCACTATGAACCGACCGATATGGTGGACCGGTAGCAGAGTCGATGAAGAACAATTTTTTTTTCCTTCCACGGCGGCGACGCGAAATTCCGGCAGATCGGTTCGTAGATGAATACAAGTATGTTGAATGTATACTTTTGTTTTCATTTTAGCTTAGAACGGAAAAATCACAGTGATATTTGGTTTTTGTTTTGACGGATCTGGATTTGATATTTTTGTGATTTCGTTTGTTTCAGCTTGAAATTTTGTTGTTAATCATAGAGATTTATAATTTTGCGAAAATTAATTTCTTCGAACGATTATGAATTTATGAATTCATTTTGTTGT</gDNA_template>
            <first_frame> Q  F  K  I  *  N  E  S  N  F  F  S  T  S  I  *  N  S  T  S  P  L  H  S  L  Q  I  *  I  S  I  S  L  S  S  M  A  I  R  T  I  Y  G  L  I  F  L  A  T  S  S  F  C  F  I  F  L  Y  L  A  L  Q  P  I  F  Y  F  T  S  *  H  R  R  R  C  H  Y  E  P  T  D  M  V  D  R  *  Q  S  R  *  R  T  I  F  F  S  F  H  G  G  D  A  K  F  R  Q  I  G  S  *  M  N  T  S  M  L  N  V  Y  F  C  F  H  F  S  L  E  R  K  N  H  S  D  I  W  F  L  F  *  R  I  W  I  *  Y  F  C  D  F  V  C  F  S  L  K  F  C  C  *  S  *  R  F  I  I  L  R  K  L  I  S  S  N  D  Y  E  F  M  N  S  F  C  C </first_frame>
            <second_frame>  N  S  K  F  E  M  K  A  T  F  F  Q  P  L  F  K  I  Q  L  P  H  S  T  L  S  R  S  K  S  Q  Y  L  S  L  P  W  R  F  E  L  S  T  D  *  Y  S  *  Q  H  P  A  F  A  S  S  S  S  I  S  L  F  N  Q  S  S  I  S  P  P  N  T  A  G  G  A  T  M  N  R  P  I  W  W  T  G  S  R  V  D  E  E  Q  F  F  F  P  S  T  A  A  T  R  N  S  G  R  S  V  R  R  *  I  Q  V  C  *  M  Y  T  F  V  F  I  L  A  *  N  G  K  I  T  V  I  F  G  F  C  F  D  G  S  G  F  D  I  F  V  I  S  F  V  S  A  *  N  F  V  V  N  H  R  D  L  *  F  C  E  N  *  F  L  R  T  I  M  N  L  *  I  H  F  V   </second_frame>
            <third_frame>   I  Q  N  L  K  *  K  Q  L  F  F  N  L  Y  L  K  F  N  F  P  T  P  L  S  P  D  L  N  L  N  I  S  L  F  H  G  D  S  N  Y  L  R  I  D  I  L  S  N  I  Q  L  L  L  H  L  P  L  S  R  S  S  T  N  L  L  F  H  L  L  T  P  P  A  V  P  L  *  T  D  R  Y  G  G  P  V  A  E  S  M  K  N  N  F  F  F  L  P  R  R  R  R  E  I  P  A  D  R  F  V  D  E  Y  K  Y  V  E  C  I  L  L  F  S  F  *  L  R  T  E  K  S  Q  *  Y  L  V  F  V  L  T  D  L  D  L  I  F  L  *  F  R  L  F  Q  L  E  I  L  L  L  I  I  E  I  Y  N  F  A  K  I  N  F  F  E  R  L  *  I  Y  E  F  I  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87425" stop="87637"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQLFFNLYLKFNFPTPLSPDLNLNISLFHGDSNYLRIDILSNIQLLLHLPLSRSSTNLLFHLLTPPAVPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="94877" PGL_stop="96152"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94877" e_stop="95561"/>
            <exon e_start="95953" e_stop="96152"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.810"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="94877" e_stop="95561" e_length="685"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391"/>
          </intron>
          <exon e_serial="2" e_score="0.810">
            <gDNA_exon_boundary e_start="95953" e_stop="96152" e_length="200"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94877" stop="95561"/>
              <exon start="95953" stop="96152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571551" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTCTCCAGCTTTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACG : GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATTAAAAACTCTTGTATCCACCAAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATCAAGTATATTGTTCAATTCC</gDNA_template>
            <first_frame> L  I  L  Q  L  F  R  R  G  V  I  Y  F  H  F  E  D  L  I  N  L  L  P  P  L  R  K  Y  H  H  P  Y  E  I  E  F  F  R  K  K  L  K  L  K  I  F  L  K  K  L  I  K  I  R  A  *  R  D  Q  *  S  Y  L  R  L  R  Y  C  L  W  I  N  G  S  R  Y  Y  R  V  T  I  H  R  A  A  S  Y  A  V  A  A  A  A  A  A  V  G  V  L  F  G  D  R  D  *  R  R  S  P  A  V  R  R  R  N  V  R  R  W  R  V  V  V  L  A  G  *  R  I  C  W  F  *  R  C  I  R  F  R  L  D  F  V  E  R  L  *  G  K  I  A  G  I  G  *  *  K  R  G  F  C  R  R  R  E  V  D  I  V  A  V  M  K  W  S  F  M  L  T  R  F  L  V  R  L  R  W  S  A  P  A  P  E  T  *  Q  P  I  R  M  L  W  S  W  R  R  K  C  G  I  S  F  T  V  L  G  S  G  G  A  H  L  N  E  V  K  C  N   : G  L  G  *  I  N  V  Y  R  W  L  N  E  E  E  G  E  V  V  L  F  F  L  K  K  N  L  V  N  S  L  C  N  *  K  L  L  Y  P  P  S  N  P  C  I  I  F  F  N  F  F  V  I  F  S  F  Q  E  S  K  S  S  I  L  F  N  S </first_frame>
            <second_frame>  *  F  S  S  F  F  G  E  G  *  F  I  S  I  L  K  I  *  *  I  F  F  P  H  S  E  N  I  I  I  L  M  K  S  N  F  F  E  K  N  *  N  *  K  F  F  *  K  N  *  L  K  L  G  H  D  E  T  N  N  H  T  F  A  S  V  T  V  S  G  *  T  A  A  A  I  I  E  *  R  F  I  A  R  R  R  T  R  *  Q  Q  Q  Q  R  R  W  E  C  C  S  E  I  A  I  S  G  G  R  R  R  Y  D  G  G  M  C  G  G  G  V  L  L  S  L  R  D  S  E  F  V  G  S  S  G  V  *  G  S  G  W  T  L  *  K  G  F  E  E  K  S  P  G  S  V  D  E  K  G  A  F  A  G  D  G  K  W  T  L  *  L  *  *  N  G  A  S  C  L  P  D  F  *  S  D  C  D  G  R  R  R  R  R  K  P  S  N  R  *  G  C  F  G  A  G  E  G  N  V  G  *  V  L  R  Y  W  V  L  E  E  P  I  S  T  K  *  N  V  T  :  A  W  D  E  L  M  C  I  G  G  *  M  K  K  R  E  K  L  F  Y  F  F  *  K  K  I  L  *  T  L  F  V  I  K  N  S  C  I  H  Q  A  I  L  V  L  Y  S  S  I  S  L  S  Y  F  H  F  K  N  R  N  Q  V  Y  C  S  I   </second_frame>
            <third_frame>   N  S  P  A  F  S  E  R  G  N  L  F  P  F  *  R  S  N  K  S  S  S  P  T  P  K  I  S  S  S  L  *  N  R  I  F  S  K  K  I  K  I  K  N  F  F  K  K  I  N  *  N  *  G  M  T  R  P  I  I  I  P  S  P  P  L  L  S  L  D  K  R  Q  P  L  L  S  S  N  D  S  S  R  G  V  V  R  G  S  S  S  S  S  G  G  G  S  V  V  R  R  S  R  L  A  E  V  A  G  G  T  T  A  E  C  A  A  V  A  C  C  C  P  C  G  I  A  N  L  L  V  L  A  V  Y  K  V  P  A  G  L  C  R  K  A  L  R  K  N  R  R  D  R  L  M  K  K  G  L  L  P  A  T  G  S  G  H  C  S  C  D  E  M  E  L  H  A  Y  Q  I  S  S  P  I  A  M  V  G  A  G  A  G  N  L  A  T  D  K  D  A  L  E  L  E  K  E  M  W  D  K  F  Y  G  T  G  F  W  R  S  P  S  Q  R  S  E  M  *  R :   L  G  M  N  *  C  V  *  V  V  E  *  R  R  G  R  S  C  S  I  F  F  K  K  K  S  C  K  L  S  L  *  L  K  T  L  V  S  T  K  Q  S  L  Y  Y  I  L  Q  F  L  C  H  I  F  I  S  R  I  E  I  K  Y  I  V  Q  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95038" stop="95559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMTRPIIIPSPPLLSLDKRQPLLSSNDSSRGVVRGSSSSSGGGSVVRRSRLAEVAGGTTAECAAVACCCPCGIANLLVLAVYKVPAGLCRKALRKNRRDRLMKKGLLPATGSGHCSCDEMELHAYQISSPIAMVGAGAGNLATDKDALELEKEMWDKFYGTGFWRSPSQRSEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="109033" PGL_stop="112528"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109033" e_stop="109142"/>
            <exon e_start="109608" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109033" e_stop="109142" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109608" e_stop="109915" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="0.943">
            <gDNA_exon_boundary e_start="112012" e_stop="112238" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109033" stop="109142"/>
              <exon start="109608" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583320" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTCTCTGTCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCGGTGAATGCTAAAGACTGCCTGTAGTTAAATGTTTGATATTTGTAATGTTATGTACTCTATTACCATAGTGACTTTGATAGTGTGTATATATCTGTTTTTTTCTTCTGTAGGTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCATGTGTGTGGCTGCCTTAAAGGATAAGCATTTTCTTTTTTCATCTGATTTCTGAGTTTCACAAGCTAGCATGTTCTGTTTACCTCTATTTATTCTTCATTCATGGCACTCCAGTTACCTG</gDNA_template>
            <first_frame> L  S  L  S  S  R  I  S  R  F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  V  N  A  K  D  C  L  *  L  N  V  *  Y  L  *  C  Y  V  L  Y  Y  H  S  D  F  D  S  V  Y  I  S  V  F  F  F  C  R  *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  M  C  V  A  A  L  K  D  K  H  F  L  F  S  S  D  F  *  V  S  Q  A  S  M  F  C  L  P  L  F  I  L  H  S  W  H  S  S  Y  L </first_frame>
            <second_frame>  C  L  C  L  L  E  F  L  G  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R  *  M  L  K  T  A  C  S  *  M  F  D  I  C  N  V  M  Y  S  I  T  I  V  T  L  I  V  C  I  Y  L  F  F  S  S  V  G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A  C  V  W  L  P  *  R  I  S  I  F  F  F  H  L  I  S  E  F  H  K  L  A  C  S  V  Y  L  Y  L  F  F  I  H  G  T  P  V  T   </second_frame>
            <third_frame>   V  S  V  F  S  N  F  *  V  P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L  G  E  C  *  R  L  P  V  V  K  C  L  I  F  V  M  L  C  T  L  L  P  *  *  L  *  *  C  V  Y  I  C  F  F  L  L  *  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  V  C  G  C  L  K  G  *  A  F  S  F  F  I  *  F  L  S  F  T  S  *  H  V  L  F  T  S  I  Y  S  S  F  M  A  L  Q  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112144"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHVCGCLKG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="109058" e_stop="109142"/>
            <exon e_start="109608" e_stop="109758"/>
            <exon e_start="109869" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="112012" e_stop="112120"/>
            <exon e_start="112232" e_stop="112528"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.560" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109058" e_stop="109142" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109608" e_stop="109758" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109869" e_stop="109915" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.560" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111917" i_stop="112011" i_length="95"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="112012" e_stop="112120" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="112232" e_stop="112528" e_length="297"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109058" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="112012" stop="112120"/>
              <exon start="112232" stop="112528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583318" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG : GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCGGGTCGAATGGAGGGCTCAAGAAATCGTTCATCCACCAATAACCGTCCACAACTTTTAGTATTTCCAACTCATCATAATTCATCTCCTACCGCTTCTGTTTCACCTTATCCTACTGGATCACTTTCTGATCCTGCTGCAATCACAACAGTTGATTCCCCTCTTCCCATTAGCTCCGGTAGCAGTGATTCACCACGACAGATGCCTTAC</gDNA_template>
            <first_frame> G  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R :   *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M  R  V  E  W  R  A  Q  E  I  V  H  P  P  I  T  V  H  N  F  *  Y  F  Q  L  I  I  I  H  L  L  P  L  L  F  H  L  I  L  L  D  H  F  L  I  L  L  Q  S  Q  Q  L  I  P  L  F  P  L  A  P  V  A  V  I  H  H  D  R  C  L   </first_frame>
            <second_frame>  V  P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L   : G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  G  S  N  G  G  L  K  K  S  F  I  H  Q  *  P  S  T  T  F  S  I  S  N  S  S  *  F  I  S  Y  R  F  C  F  T  L  S  Y  W  I  T  F  *  S  C  C  N  H  N  S  *  F  P  S  S  H  *  L  R  *  Q  *  F  T  T  T  D  A  L  </second_frame>
            <third_frame>   F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  :  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A  G  R  M  E  G  S  R  N  R  S  S  T  N  N  R  P  Q  L  L  V  F  P  T  H  H  N  S  S  P  T  A  S  V  S  P  Y  P  T  G  S  L  S  D  P  A  A  I  T  T  V  D  S  P  L  P  I  S  S  G  S  S  D  S  P  R  Q  M  P  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109132" stop="109142"/>
                    <exon start="109608" stop="109758"/>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="112012" stop="112120"/>
                    <exon start="112232" stop="112528"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIRFVRFLGMDEVKKSEGHMTSPAAFVEGGIQDACDDACSICLEAFCESDPPSVTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHAGRMEGSRNRSSTNNRPQLLVFPTHHNSSPTASVSPYPTGSLSDPAAITTVDSPLPISSGSSDSPRQMPY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109042" e_stop="109142"/>
            <exon e_start="109608" e_stop="109758"/>
            <exon e_start="109869" e_stop="109915"/>
            <exon e_start="111854" e_stop="111916"/>
            <exon e_start="111994" e_stop="112120"/>
            <exon e_start="112232" e_stop="112321"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="0.941"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="0.915"/>
          <exon-intron don_prob="0.560" acc_prob="0.181" e_score="0.952"/>
          <exon-intron don_prob="0.341" acc_prob="0.969" e_score="0.953"/>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="109042" e_stop="109142" e_length="101"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="109143" i_stop="109607" i_length="465"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="109608" e_stop="109758" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="109759" i_stop="109868" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.915">
            <gDNA_exon_boundary e_start="109869" e_stop="109915" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="109916" i_stop="111853" i_length="1938"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="111854" e_stop="111916" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.560" acc_prob="0.181">
            <gDNA_intron_boundary i_start="111917" i_stop="111993" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="0.953">
            <gDNA_exon_boundary e_start="111994" e_stop="112120" e_length="127"/>
          </exon>
          <intron i_serial="5" don_prob="0.341" acc_prob="0.969">
            <gDNA_intron_boundary i_start="112121" i_stop="112231" i_length="111"/>
          </intron>
          <exon e_serial="6" e_score="0.967">
            <gDNA_exon_boundary e_start="112232" e_stop="112321" e_length="90"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109042" stop="109142"/>
              <exon start="109608" stop="109758"/>
              <exon start="109869" stop="109915"/>
              <exon start="111854" stop="111916"/>
              <exon start="111994" stop="112120"/>
              <exon start="112232" stop="112321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U587832" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCTCGAATTTCTAGGTTCCTGAAAGGGGCCTTATCGGTTCAACAAATTAATTTTCTTCTTCACCCAATTTCCGGAGCCTTTTTCTAAATTCATATCAG : GTTTGTAAGGTTTTTGGGAATGGATGAGGTCAAGAAATCAGAGGGTCATATGACATCCCCTGCAGCTTTTGTGGAAGGAGGAATTCAGGATGCATGTGATGATGCTTGCAGCATTTGTCTCGAGGCTTTCTGCGAAAGCGATCCTCCCTCG : GTAACTAGCTGCAAGCATGAGTTTCATCTCCAGTGCGTCCTGGAATG : GTGTCAGAGAAGTTCTAATTGTCCTATGTGTTGGCAGTCCATAAGTCTGAAAGATCAGATGAG : TTGACTTCCCTCTTTCAGTCAAGAATTGTTTGAGGCTGTGGAACAAGAAAGGAATTTTAGAGTTAATGCAGAAAGAAATGCTACAGTATTTCAGTTTCCTGCACTGGGAGATTTTGAACTACAGCAT : TTACCTGTGGATATTGATGATCCTGAACTTGAAGAGCGCATTCTTCAGCATTTGGCTGTTGCTGCTTCAATGGGAAGAGCTCACCATGCG</gDNA_template>
            <first_frame> S  S  R  I  S  R  F  L  K  G  A  L  S  V  Q  Q  I  N  F  L  L  H  P  I  S  G  A  F  F  *  I  H  I  R :   F  V  R  F  L  G  M  D  E  V  K  K  S  E  G  H  M  T  S  P  A  A  F  V  E  G  G  I  Q  D  A  C  D  D  A  C  S  I  C  L  E  A  F  C  E  S  D  P  P  S  :  V  T  S  C  K  H  E  F  H  L  Q  C  V  L  E  W :   C  Q  R  S  S  N  C  P  M  C  W  Q  S  I  S  L  K  D  Q  M  S :   *  L  P  S  F  S  Q  E  L  F  E  A  V  E  Q  E  R  N  F  R  V  N  A  E  R  N  A  T  V  F  Q  F  P  A  L  G  D  F  E  L  Q  H  :  L  P  V  D  I  D  D  P  E  L  E  E  R  I  L  Q  H  L  A  V  A  A  S  M  G  R  A  H  H  A </first_frame>
            <second_frame>  L  L  E  F  L  G  S  *  K  G  P  Y  R  F  N  K  L  I  F  F  F  T  Q  F  P  E  P  F  S  K  F  I  S   : G  L  *  G  F  W  E  W  M  R  S  R  N  Q  R  V  I  *  H  P  L  Q  L  L  W  K  E  E  F  R  M  H  V  M  M  L  A  A  F  V  S  R  L  S  A  K  A  I  L  P  R :   *  L  A  A  S  M  S  F  I  S  S  A  S  W  N   : G  V  R  E  V  L  I  V  L  C  V  G  S  P  *  V  *  K  I  R  *   : V  D  F  P  L  S  V  K  N  C  L  R  L  W  N  K  K  G  I  L  E  L  M  Q  K  E  M  L  Q  Y  F  S  F  L  H  W  E  I  L  N  Y  S  I :   Y  L  W  I  L  M  I  L  N  L  K  S  A  F  F  S  I  W  L  L  L  L  Q  W  E  E  L  T  M   </second_frame>
            <third_frame>   F  S  N  F  *  V  P  E  R  G  L  I  G  S  T  N  *  F  S  S  S  P  N  F  R  S  L  F  L  N  S  Y  Q  :  V  C  K  V  F  G  N  G  *  G  Q  E  I  R  G  S  Y  D  I  P  C  S  F  C  G  R  R  N  S  G  C  M  *  *  C  L  Q  H  L  S  R  G  F  L  R  K  R  S  S  L   : G  N  *  L  Q  A  *  V  S  S  P  V  R  P  G  M  :  V  S  E  K  F  *  L  S  Y  V  L  A  V  H  K  S  E  R  S  D  E  :  L  T  S  L  F  Q  S  R  I  V  *  G  C  G  T  R  K  E  F  *  S  *  C  R  K  K  C  Y  S  I  S  V  S  C  T  G  R  F  *  T  T  A   : F  T  C  G  Y  *  *  S  *  T  *  R  A  H  S  S  A  F  G  C  C  C  F  N  G  K  S  S  P  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109132" stop="109142"/>
                    <exon start="109608" stop="109758"/>
                    <exon start="109869" stop="109915"/>
                    <exon start="111854" stop="111916"/>
                    <exon start="111994" stop="111997"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHIRFVRFLGMDEVKKSEGHMTSPAAFVEGGIQDACDDACSICLEAFCESDPPSVTSCKHEFHLQCVLEWCQRSSNCPMCWQSISLKDQMS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111916" stop="112120"/>
                    <exon start="112232" stop="112319"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDFPLSVKNCLRLWNKKGILELMQKEMLQYFSFLHWEILNYSIYLWILMILNLKSAFFSIWLLLLQWEELTM</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111998" stop="112120"/>
                    <exon start="112232" stop="112321"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSFSQELFEAVEQERNFRVNAERNATVFQFPALGDFELQHLPVDIDDPELEERILQHLAVAASMGRAHHA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 49 chains have been computed
$ 
$ memory statistics:
$ 145888 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 5210 bytes was the average size of a spliced alignment
$ 30152 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1586 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 51 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:06:48
-->
