<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:16:06"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277473" ref_strand="+" ref_description="SGN-E277473 [cLER-3-E18]">
      <seq>aagctttgttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2352" stop="3446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2652" g_stop="3146" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E277473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2652" e_stop="3146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAA</genome_strand>
        <mrna_strand>AAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283789" ref_strand="+" ref_description="SGN-E283789 [cLES-1-B11]">
      <seq>agctttgttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2353" stop="3419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2653" g_stop="3119" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E283789" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2653" e_stop="3119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCA</genome_strand>
        <mrna_strand>AGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487852" ref_strand="+" ref_description="SGN-E487852 [cSTE-26-D14]">
      <seq>ctctgttcttccatggcgaaacttaccaatcatgaagttgccatagtaatggttccattaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctaacacctcccactccacttcgccggaaccaccgtccacctccgtcaagcaaaaaatcgcatccatggctggaacccactctccacctccaccgtcaaattccacgaattcccaatcccaaattacgaaaccccacctcctaatccaaattcccgtcccaattgatgccctctttccacgccacgagtcatcttcgtcatccaattactgcctttttacaagaactatccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatgctccttctataccaaatgttgagtgttacagctttcgtagcatttcagctttttcgatctactcttgggataaatcctctgttacgccggagtttacagagtataccagagtacaatttgagttcagggaagttgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattggctagcaaaagagaaaagttcgcgtgataaacaatgggctattggtccattgaaccccgtgaaactgtatgataaaaataattcactaatttcacataaatgtatgaattggcttgatgaacaagaacaaattctgtcatattcgtgtctttcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2355" stop="3722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2655" g_stop="3422" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="754" r_length="754" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E487852" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2655" e_stop="3422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGG</genome_strand>
        <mrna_strand>CTCTGTTCTTCCATGGCGAAACTTACCAATCATGAAGTTGCCATAGTAATGGTTCCATTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTAACACCTCCCACTCCACTTCGCCGGAACCACCGTCCACCTCCGTCAAGCAAAAAATCGCATCCATGGCTGGAACCCACTCTCCACCTCCACCGTCAAATTCCACGAATTCCCAATCCCAAATTACGAAA-CCC-C-ACC---TCCTAA-T------CCAAATTCCCGTCCCAATTGATGCCCTCTTTCCACGCCACGAGTCATCTTCGTCATCCAATTACTGCCTTTTTACAAGAACTATCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATGCTCCTTCTATACCAAATGTTGAGTGTTACAGCTTTCGTAGCATTTCAGCTTTTTCGATCTACTCTTGGGATAAATCCTCTGTTACGCCGGAGTTTACAGAGTATACCAGAGTACAATTTGAGTTCAGGGAAGTTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTGGCTAGCAAAAGAGAAAAGTTCGCGTGATAAACAATGGGCTATTGGTCCATTGAACCCCGTGAAACTGTATGATAAAAATAATTCACTAATTTCACATAAATGTATGAATTGGCTTGATGAACAAGAA-CAAATTCTGTCATATTCGTGTCTTTCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211705" ref_strand="+" ref_description="SGN-E211705 [cLEC-66-A21]">
      <seq>tttgttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggataaatccagtgtaacgccggagtttacagagtatagcagagtacaatttgagttcagagaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattttgtagcaaaagagaaaagtgcgcgtaataaacaatgggctattggggacattaanacctgtgaacagtttgataaaaaaaattcattaatttcgcataaatgtatgaattgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2356" stop="3679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2656" g_stop="3381" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E211705" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2656" e_stop="3381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATT-GGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTG</genome_strand>
        <mrna_strand>TTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGGGACATTAANACCTGTG-AACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204260" ref_strand="+" ref_description="SGN-E204260 [cLEC-13-D20]">
      <seq>tttgttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2356" stop="3443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2656" g_stop="3143" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E204260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2656" e_stop="3143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGAT</genome_strand>
        <mrna_strand>TTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375393" ref_strand="+" ref_description="SGN-E375393 [TUS-15-H14]">
      <seq>tggttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggataaatccagtgtaacgccggagtttacagagtatagcagagtacaatttgagttcagagaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattttgtaccaaaagagaaaagtgcgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2359" stop="3591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2657" g_stop="3291" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="635" r_length="635" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E375393" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2657" e_stop="3291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTA</genome_strand>
        <mrna_strand>TGGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTACCAAAAGAGAAAAGTGCGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419599" ref_strand="+" ref_description="SGN-E419599 [STM-29-L10]">
      <seq>gtttttccatggcgaaacttaccaatcatgaagttgccatagtaatgattccattaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctatcacctcccactccacttcgccggaaccaccgtccacctccgtcaagcaaaaaatcgcatccatggctggaacccactctccacctctaccgtcaaattccacgaattcccaaccccaaattacgaaaccccagctcctaatccaaattccacatccaaattcccttctcaattgatgccctctttacacgccacgagtcatcttcgtcatccgattactgcccttttacaagaactatccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatgctccttctatatcaaatgttgagtgttacagctttcgtagcgtttcagctttttcgatttactcttgggataaatcctctgttacgccggaggttacagagtatatcagagtacaatttgaggtcagggaaattgttaattctggcaatttatacaattcttgctatgaaattgaaggattgtatcttgattggctagcaaaagagaaaagttcgcgtgataaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2359" stop="3602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2659" g_stop="3302" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E419599" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2659" e_stop="3302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGG</genome_strand>
        <mrna_strand>GTTTTTCCATGGCGAAACTTACCAATCATGAAGTTGCCATAGTAATGATTCCATTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATCACCTCCCACTCCACTTCGCCGGAACCACCGTCCACCTCCGTCAAGCAAAAAATCGCATCCATGGCTGGAACCCACTCTCCACCTCTACCGTCAAATTCCACGAATTCCCAACCCCAAATTACGAAACCCCAGCTCCTAATCCAAATTCCACATCCAAATTCCCTTCTCAATTGATGCCCTCTTTACACGCCACGAGTCATCTTCGTCATCCGATTACTGCCCTTTTACAAGAACTATCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATGCTCCTTCTATATCAAATGTTGAGTGTTACAGCTTTCGTAGCGTTTCAGCTTTTTCGATTTACTCTTGGGATAAATCCTCTGTTACGCCGGAGGTTACAGAGTATATCAGAGTACAATTTGAGGTCAGGGAAATTGTTAATTCTGGCAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTGGCTAGCAAAAGAGAAAAGTTCGCGTGATAAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444463" ref_strand="+" ref_description="SGN-E444463 [cSTA-43-C3]">
      <seq>gtttttccatggcgaaacttaccaatcatgaagttgccatagtaatgattccattaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctatcacctcccactccacttcgccggaaccaccgtccacctccgtcaagcaaaaaatcgcatccatggctggaacccactctccacctctaccgtcaaattccacgaattcccaaccccaaattacgaaaccccagctcctaatccaaattccacatccaaattcccttctcaattgatgccctctttacacgccacgagtcatcttcgtcatccgattactgcccttttacaagaactatccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatgctccttctatatcaaatgttgagtgttacagctttcgtagcgtttcagctttttcgatttactcttgggataaatcctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2359" stop="3453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2659" g_stop="3153" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E444463" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2659" e_stop="3153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTG</genome_strand>
        <mrna_strand>GTTTTTCCATGGCGAAACTTACCAATCATGAAGTTGCCATAGTAATGATTCCATTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATCACCTCCCACTCCACTTCGCCGGAACCACCGTCCACCTCCGTCAAGCAAAAAATCGCATCCATGGCTGGAACCCACTCTCCACCTCTACCGTCAAATTCCACGAATTCCCAACCCCAAATTACGAAACCCCAGCTCCTAATCCAAATTCCACATCCAAATTCCCTTCTCAATTGATGCCCTCTTTACACGCCACGAGTCATCTTCGTCATCCGATTACTGCCCTTTTACAAGAACTATCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATGCTCCTTCTATATCAAATGTTGAGTGTTACAGCTTTCGTAGCGTTTCAGCTTTTTCGATTTACTCTTGGGATAAATCCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213345" ref_strand="+" ref_description="SGN-E213345 [cLEC-71-A19]">
      <seq>tcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggataaatccagtgtaacgccggagtttacagagtatagcagagtacaatttgagttcagagaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattttgtagcaaaagagaaaagtgcgcgtaataaaacatgggctattggacccattaaacctgtgaaacagtttgataaaaaaaattcattaatttcgcataaatgtatgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2361" stop="3676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2661" g_stop="3376" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E213345" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2661" e_stop="3376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTG</genome_strand>
        <mrna_strand>TCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAAACATGGGCTATTGGACCCATTAAACCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410910" ref_strand="+" ref_description="SGN-E410910 [PPI-18-M20]">
      <seq>ggcgaaacttaccaatcatgaagttgccatagtaatgattccattaccagcacaaggccatttaaaccaactcctccacctctcccgtctcatctccgcctatcacctcccactccacttcgccggaaccaccgtccacctccgtcaagcaaaaaatcgcatccatggctggaacccactctccacctccaccgtcaaattccacgaattcccaaccccaaattacgaaaccccagctcctaatccaaattccaccaccaaattcccttcccaattgatgccctctttccacgccacgagtcatcttcgtcacccgattacttcccttttacaagaactttccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatgctccttctatatcaaatgttgagtgttacagctttcgtagcatttcagctttttcgatctactcttgggataaatcctctgttacgccggagtttacagagtataccagagtacaatttgagttcagggaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattggctagcaaaagagaaaagttcgcgtgataaacaatgggctattggtccattaaacccagtgaaactgtatgagaaaaataattcattaatttcacataaatgtatgaattggcttgatgaaacagaaaccaatctgtcatattcgtgtctttcgggacgacgactacgttttctgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2369" stop="3744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2669" g_stop="3444" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E410910" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E410910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2669" e_stop="3444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATG</genome_strand>
        <mrna_strand>GGCGAAACTTACCAATCATGAAGTTGCCATAGTAATGATTCCATTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGTCTCATCTCCGCCTATCACCTCCCACTCCACTTCGCCGGAACCACCGTCCACCTCCGTCAAGCAAAAAATCGCATCCATGGCTGGAACCCACTCTCCACCTCCACCGTCAAATTCCACGAATTCCCAACCCCAAATTACGAAACCCCAGCTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCCTCTTTCCACGCCACGAGTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTTTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATGCTCCTTCTATATCAAATGTTGAGTGTTACAGCTTTCGTAGCATTTCAGCTTTTTCGATCTACTCTTGGGATAAATCCTCTGTTACGCCGGAGTTTACAGAGTATACCAGAGTACAATTTGAGTTCAGGGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTGGCTAGCAAAAGAGAAAAGTTCGCGTGATAAACAATGGGCTATTGGTCCATTAAACCCAGTGAAACTGTATGAGAAAAATAATTCATTAATTTCACATAAATGTATGAATTGGCTTGATGAAACAGAAACCAA-TCTGTCATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406452" ref_strand="+" ref_description="SGN-E406452 [PPI-3-H20]">
      <seq>gaaaccccagctcctaatccaaattccacaccaaattcccttcccaattgatgccctctttccacgcccacgagtcatcttcgtcacccgattaccttcccttttaccaagaacctttccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatgctccttctataccaaatattgagtgttaccagctttcgtagcatttcagctttttcgatctactcttgggataaatcctctgttacgccggagtttacagagtataccagagtacaatttgaggtcagggaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattggctagcaaaagagaaaagttcgtgtgataaacaatgggctattggtccattaaacccggtgaaactgtatgagaaaaataattcattaatttcacataaatgtatgaattggcttgatgaacaagaaccaaattctgtcatattcgtgtctttcgggacgacgactacgttttctgatgaacaaattaaggaattagcctattggttggagaaaagcgagcagnagattcatatgggtattganggaagctgataaaggtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2595" stop="3827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2895" g_stop="3527" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E406452" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2895" e_stop="3527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACG-CCACGATTCATCTTCGTCACCCGATTA-CTTCCCTTTTA-CAAGAA-CTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTA-CAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAG-AGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGAC</genome_strand>
        <mrna_strand>GAAACCCCAGCTCCTAATCCAAATTCCA-CACCAAATTCCCTTCCCAATTGATGCCCTCTTTCCACGCCCACGAGTCATCTTCGTCACCCGATTACCTTCCCTTTTACCAAGAACCTTTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATGCTCCTTCTATACCAAATATTGAGTGTTACCAGCTTTCGTAGCATTTCAGCTTTTTCGATCTACTCTTGGGATAAATCCTCTGTTACGCCGGAGTTTACAGAGTATACCAGAGTACAATTTGAGGTCAGGGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTGGCTAGCAAAAGAGAAAAGTTCGTGTGATAAACAATGGGCTATTGGTCCATTAAACCCGGTGAAACTGTATGAGAAAAATAATTCATTAATTTCACATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTCATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCCTATTGGTTGGAGAAAAGCGAGCAGNAGATTCATATGGGTATTGANGGAAGCTGATAAAGGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242353" ref_strand="+" ref_description="SGN-E242353 [cLEE-3-I3]">
      <seq>ttaaaccctgtgaaacagtttgataaaaaaaattcattaatttcgcataaatgtatgaattggcttgatgaacaagaaccaaattctgtgatattcgtgtctttcgggacgacgactacgttttctgatgaacaaattaaggaattagcaattgggttggagaaaagtgaacagagatttatatgggtattgagggaagctgataaaggtgacatttttacaggggaaagtagagaagttgagttaccagaagggtatgaagagagagtggggaaaagaggggttatagtgagagattgggcaccacaattggagatattgggacacgagtcgacgggtggattcatgagccattgcgggtggaattcgtgtatggagagtatatcaatgggagtaccaatattagcttggccaatgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtacagttgagggattgggcaaagagagatgagttggtgagttcagttgcagttgcagaatgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3015" stop="4151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3315" g_stop="3851" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E242353" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3315" e_stop="3851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTT</genome_strand>
        <mrna_strand>TTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTACAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484950" ref_strand="+" ref_description="SGN-E484950 [cSTE-16-A3]">
      <seq>cccggtgaaactgtatgagaaaaataattcattaatttcacataaatgtatgaattggcttgatgaacaagaaccaaattctgtcatattcgtgtctttcgggacgacgactacgttttctgatgaacaaattaaggaaatagcaattgggttggagaaaagcgagcagagattcatatgggtattgagggaagctgataaatgtaacatttttacaggggaaagtagggacgttgagttaccagaagggtatgaagaaagagtggggaaaagagggcttattgtgagagattgggcaccacaattggagatattgggacacgagtcgacgggtggattcatgagtcattgcgggtggaattcatgtatggagagtatatcaatgggtgtgccagttttagcttggccaatgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtagaattgagggattgggcaaagagagatgagttggtgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3020" stop="4127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3320" g_stop="3827" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E484950" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3320" e_stop="3827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGT</genome_strand>
        <mrna_strand>CCCGGTGAAACTGTATGAGAAAAATAATTCATTAATTTCACATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTCATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAAATAGCAATTGGGTTGGAGAAAAGCGAGCAGAGATTCATATGGGTATTGAGGGAAGCTGATAAATGTAACATTTTTACAGGGGAAAGTAGGGACGTTGAGTTACCAGAAGGGTATGAAGAAAGAGTGGGGAAAAGAGGGCTTATTGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCATGTATGGAGAGTATATCAATGGGTGTGCCAGTTTTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAATTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485520" ref_strand="+" ref_description="SGN-E485520 [cSTE-18-E24]">
      <seq>cccggtgaaactgtatgagaaaaataattcattaatttcacataaatgtatgaattggcttgatgaacaagaaccaaattctgtcatattcgtgtctttcgggacgacgactacgttttctgatgaacaaattaaggaaatagcaattgggttggagaaaagcgagcagagattcatatgggtattgagggaagctgataaatgtaacatttttacaggggaaagtagggacgttgagttaccagaagggtatgaagaaagagtggggaaaagagggcttattgtgagagattgggcaccacaattggagatattgggacacgagtcgacgggtggattcatgagtcattgcgggtggaattcatgtatggagagtatatcaatgggtgtgccagttttagcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3020" stop="4024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3320" g_stop="3724" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E485520" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3320" e_stop="3724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTG</genome_strand>
        <mrna_strand>CCCGGTGAAACTGTATGAGAAAAATAATTCATTAATTTCACATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTCATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAAATAGCAATTGGGTTGGAGAAAAGCGAGCAGAGATTCATATGGGTATTGAGGGAAGCTGATAAATGTAACATTTTTACAGGGGAAAGTAGGGACGTTGAGTTACCAGAAGGGTATGAAGAAAGAGTGGGGAAAAGAGGGCTTATTGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGTCATTGCGGGTGGAATTCATGTATGGAGAGTATATCAATGGGTGTGCCAGTTTTAGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207210" ref_strand="+" ref_description="SGN-E207210 [cLEC-30-J13]">
      <seq>ctagttaaaatcgccttgtattatctcgtcatatgggcaatgaaagaagccatctctctgccactgccaccaccatccaccactgatttactcaactccataaccctctgtctcatctcatctccttctgcagaatccatcaatctctgaacacattctgcaactgcaactgaactcaccaactcatctctctttgcccaatccctcaactctactccaattttcaacacttcagttaccaaaactgcatttcttggttgatctgaatgcattggccaagctaatattggtactcccattgatatactctccatacacgaattccacccgcaatggctcatgaatccacccgtcgactcgtgtcccaatatctccaattgcggtgcccaatctctcactataacccctctttttcccactctctcttcatacccttctgggaactcaacttctctactttcccctgtaaaaaagtcacctttatcagcttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4300" stop="3209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4000" g_stop="3509" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E207210" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4000" e_stop="3509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTAAAATCGTCTTTTATTATCTCGTAATATGGGCAATGAAAGAAGCCATCTCTCTGCCACTGCCACCACCATCCACCACTGATTTACTCAACTCCATAACCCTCTGTCTCATCTCATCTCCTTCTGCAGAATCCATCAATCTCTTAACACATTCTGCAACTGCAACTGAACTCACCAACTCATCTCTCTTTGCCCAATCCCTCAACTCTACTCCAATTTTCAACACTTCAGTTACCAAAACTGCATTTCTTGGTTGATCTGAATGCATTGGCCAAGCTAATATTGGTACTCCCATTGATATACTCTCCATACACGAATTCCACCCGCAATGGCTCATGAATCCACCCGTCGACTCGTGTCCCAATATCTCCAATTGTGGTGCCCAATCTCTCACTATAACCCCTCTTTTCCCCACTCTCTCTTCATACCCTTCTGGTAACTCAACTTCTCTACTTTCCCCTGTAAAAATGTCACCTTTATCAGCTTCC</genome_strand>
        <mrna_strand>CTAGTTAAAATCGCCTTGTATTATCTCGTCATATGGGCAATGAAAGAAGCCATCTCTCTGCCACTGCCACCACCATCCACCACTGATTTACTCAACTCCATAACCCTCTGTCTCATCTCATCTCCTTCTGCAGAATCCATCAATCTCTGAACACATTCTGCAACTGCAACTGAACTCACCAACTCATCTCTCTTTGCCCAATCCCTCAACTCTACTCCAATTTTCAACACTTCAGTTACCAAAACTGCATTTCTTGGTTGATCTGAATGCATTGGCCAAGCTAATATTGGTACTCCCATTGATATACTCTCCATACACGAATTCCACCCGCAATGGCTCATGAATCCACCCGTCGACTCGTGTCCCAATATCTCCAATTGCGGTGCCCAATCTCTCACTATAACCCCTCTTTTTCCCACTCTCTCTTCATACCCTTCTGGGAACTCAACTTCTCTACTTTCCCCTGTAAAAAAGTCACCTTTATCAGCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375392" ref_strand="+" ref_description="SGN-E375392 [TUS-15-H14](-)">
      <seq>catttttacaggggaaagtagagaagttgaggttaccaaaagggtatgaaaagagaagtggggaaaagaaggggttaatagtgagagattgggcaccacaattggagatattgggacacgagtcgacgggtggattcatgagccattgcgggtggaattcgtgtatggagagtatatcaatgggagtaccaatattagcttggccaatgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtaaagttgagggattgggcaaaaaaagatgagttggtgagttcagttgcagttgcagaatgtgttaaaaaattgatggattctgcagaaggaaatgaaatgaggcagagggttatggagttgagtaaaccactggtgaaaggtggtggcagtggcataaaaatgggttttttcattgcccatattacgagaatatataaaagacgattttacctagattttattccttttaaacgattgtagtgagtttgttgtgccaactttaagtggctatttatgggttacatttataaagaagttcaggtgggttactataattcgactccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3227" stop="4410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3527" g_stop="4110" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="592" polyA_stop="619"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E375392" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3527" e_stop="4110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTACAGGGGAAAGTAGAGAAGTTGA-GTTACCAGAAGGGTATGAAGAGAG-AGTGGGGAAAAG-AGGGGTT-ATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAG-ATA-ATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCA-GTGTGTTACTATAATTCGACTCAAA</genome_strand>
        <mrna_strand>CATTTTTACAGGGGAAAGTAGAGAAGTTGAGGTTACCAAAAGGGTATGAAAAGAGAAGTGGGGAAAAGAAGGGGTTAATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAAAGTTGAGGGATTGGGCAAAAAAAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAAAAATTGATGGATTCTGCAGAAGGAAATGAAATGAGGCAGAGGGTTATGGAGTTGAGTAAACCACTGGTGAAAGGTGGTGGCAGTGGCATAAAAATGGGTTTTTTCATTGCCCATATTACGAGAATATATAAAAGACGATTTTACCTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTTAAGTGGCTATTTATGGGTTACATTTATAAAGAAGTTCAGGTGGGTTACTATAATTCGACTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352442" ref_strand="+" ref_description="SGN-E352442 [cTOS-9-N16]">
      <seq>tggattcatgagccattgcgggtggaattcgtgtatggagagtatatcaatgggagtaccaatattagcttggccaatgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtagagttgagggattgggcaaagagagatgagttggtgagttcagttgcagttgcagaatgtgttaagagattgatggattctgcagaaggagatgagatgagacagagggttatggagttgagtaaatcagtggtggatggtggtggcagtggcagagagatggcttctttcattgcccatattacgagataataaaagacgattttaactagattttattccttttaaacgattgtagtgagtttgttgtgccaacttgaagtggctattgatgggctacatttataaagaagttcagtgtgttactataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3353" stop="4399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3653" g_stop="4109" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E352442" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3653" e_stop="4109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATAATTCGACTCAA</genome_strand>
        <mrna_strand>TGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224594" ref_strand="+" ref_description="SGN-E224594 [cLEL-27-F4](-)">
      <seq>tatggagagtatatcaatgggagtaccaatattagcttggccaatgcattcagatcaacccaagaaatgcagttttggtaactgaagtgttgaaaattggagtagagttgagggattgggcaaagagagatgagttggtgagttcagttgcagttgcagaatgtgttaagagattgatggattctgcagaaggagatgagatgagacagagggttatggagttgagtaaatcagtggtggatggtggtggcagtggcagagagatggcttctttcattgcccatattacgagataataaaagacgattttaactagattttattccttttaaacgattgtagtgagtttgttgtgccaacttgaagtggctattgatgggctacatttataaagaagttcagtgtgttcctataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3386" stop="4399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3686" g_stop="4098" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="415" polyA_stop="432"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E224594" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3686" e_stop="4098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAA-CCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATA</genome_strand>
        <mrna_strand>TATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224670" ref_strand="+" ref_description="SGN-E224670 [cLEL-27-F4](-)">
      <seq>atgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtagagttgagggattgggcaaagagagatgagttggtgagttcagttgcagttgcagaatgtgttaagagattgatggattctgcagaaggagatgagatgagacagagggttatggagttgagtaaatcagtggtggatggtggtggcagtggcagagagatggcttctttcattgcccatattacgagataataaaagacgattttaactagattttattccttttaaacgattgtagtgagtttgttgtgccaacttgaagtggctattgatgggctacatttataaagaagttcagtgtgttnctataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="3429" stop="4399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3729" g_stop="4098" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="388"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E224670" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3729" e_stop="4098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATA</genome_strand>
        <mrna_strand>ATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTNCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245916" ref_strand="+" ref_description="SGN-E245916 [cLEF-51-C7]">
      <seq>ggaaatttccatggcaggcagccaagcgagtttggtttccaaatacgaacaaacaccaacaagaaattacgcctaattacagtgctctctaaacgtatttggatttcttcagtttgttcttctcagtgtttcttttggtgagtttgattcagaaaactcgaaggttttttaaagaatagagaaggaaatagatatgggtatgctcagatagcagttttggtgaccaatttttcacgtctgtgaattttcaagtatcaaatggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcgtttcttgcatttgggtccatttcctttttggtatttgtttatgttgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4479" stop="5787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4779" g_stop="5014" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5487" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="358" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E245916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4779" e_stop="5014"/>
          <exon e_start="5366" e_stop="5487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACGGTTTGTGCTAAACCCTTTTCGATTTTCTTGCTCAATTTGCTTGTATCAGTGAAAATTTCCATGAAAGATTGGATCTTTTTGTTGCTTTGTCGATTATGAAATCACCCAAATTAGCAAAATCTATTTTTGCTGCTTTTTCTGATATGGGTTATGCTGAGACAGCAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTA</genome_strand>
        <mrna_strand>GGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACG...............................................................................................................................................................................................................................................................................................................................................................TCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433412" ref_strand="+" ref_description="SGN-E433412 [STM-58-O6]">
      <seq>ttctaacgttttacagtattgggatttcttcaattgttcttttcactgtttcttttggtgggtttgattcagaaaactcgaagctttttttgaagaacagagaaggaaatagatatgggtctgctcagattgcagttttggtgaccaaattttcacgtcaattttcaagtatcaaatggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcttttcttgcatttgggtccatttcttttttggtatttgtttatgctgctattgtctccaagttgcttccgccattcgataatccgatccttgcagccatacagaacgacagatactattgctttctggttccattaacgcttcccatccttgttgttgctatatatttccactggctcagcatgaagatctttaagcatgcatagctcagacgaggtatggagcttttgtgtaatctcacgaaagatcgttatcaattggttaggtttctgattccaagttgtttgcttgaaacatttgacatgagtagaatgagataagttttcctagtaatgataaatggagatactttcactattaaagtgtagttattttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4592" stop="7451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4855" g_stop="5014" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.856"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351">
            <donor d_prob="0.823" d_score="0.94"/>
            <acceptor a_prob="0.741" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5548" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="336" r_length="179" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6890" g_stop="7151" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="598" r_length="262" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="602" polyA_stop="615"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E433412" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4855" e_stop="5014"/>
          <exon e_start="5366" e_stop="5548"/>
          <exon e_start="6890" e_stop="7151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAG-GTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACGGTTTGTGCTAAACCCTTTTCGATTTTCTTGCTCAATTTGCTTGTATCAGTGAAAATTTCCATGAAAGATTGGATCTTTTTGTTGCTTTGTCGATTATGAAATCACCCAAATTAGCAAAATCTATTTTTGCTGCTTTTTCTGATATGGGTTATGCTGAGACAGCAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAGGTGACTTTCCCTTTGTTCAATTTTATCCAGTTTCTGTTATTTAGTCAAATTAGCTTATGCCTGGCTGTATTGATAGCTATTGGGAATTATTATAATGTAGTGCTTAGTGAAATGCAAACTGTTATTGAGCCTTATCCGGATTGTTTGTCGCTGTTTCACTTTAGAAACTGATTGTTTAGATAAAATTATCTCTAAATTTAGGGATTTGTAAGGAACTTGACACTGTGACATTGTTTTGTAGATCATAAACTGAGTTGAGGTATCGAGATTTTAGATAGTGTTTTGGGATAATAAATGGGTTTGTTCACTTACTATTTATGAATGTTCTTTTGCTGTCCACTGTGTTTGTTACTCTTGACAAATTGTATGATTGGCCTGTTGGTAATAGTTGTTCACAAATTGTATAGATCATAACTTACCGGTTTGGGATCATTTATGCTCTAACTGCAGGGATGTTGATCCCACTCCCATTTAAACTTATTTTACTAGGATCTCGTCTCCATGAAACTTGCATTCATATTTGTGACACTTCTGTCTGTTTAATAATTATCTCGTCTCCCCTTTTTGAAAAATAAAGAGATTTTATCTAGTTCATTGGAAAGGTACTTTTTGGGATTCTGCTTTTAATCATCATGGATATAGAAAGAAGATTACTTAGAAGCCGATGCTGCTGGTCGAAATGTATTATGCTTTCCATACGACCTATAGCTCTTCAGTAAGTTACAACTCGAACATCTAACTGCTTGTGGTTTCAATAAAAAAGTTAATATGCTTAAGAGGTTTACAACTACATGGGTCTCTTCCAACCAGTTAACTGAAAGATCAATTTTGAATAGAAACACTTCCATTTTCTTACTTATTCATCACTCACATTGAGCCGAAGCATTGATTTGGTAGTACCAGACCAGTACTTCTCAATTCTGGATGCTTACATTCATTGTTAATGCATTAGCCAGCTTGCAGCATAATATTACGTACTGGTATGATGATTTGGTAAAAGTTGATTCGATTATGTTATCTTAATACTTTAGTTATACAAGAGTCTTCATTAACTGAATTCGACTTCGTCAATAAAAAGCGGTTATGGCATGAGTGGAATTGTTATTTGGAAAGGAGGATTCTATGAGATATCTTTCTGATTTTGTGATGGTTGTTAGTCTAATATAATCACCGTGCTATAATCAAAATCTTACTAAATGCTTGATGGGTTTTGTAGCTGGACTATCTCATGTTCAATAGTTTACGAATATTCTTCTTCCCCTTATCCCAAATTATCACGTTTGTGTTGGTATAAATAGCGCTTTTAGCCTGTGTTTGAGTTATTTTGTATTTCTGTTTCAGATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTT</genome_strand>
        <mrna_strand>TTCTAACG-T-TTTACA-GTATTGGGATTTCTTCAATT-GTTCTTTTCACTGTTTCTTTTGGTGGGTTTGATTCAGAAAACTCGAAGCTTTTTTTGAAGAACAGAGAAGGAAATAGATATGGGTCTGCTCAGATTGCAGTTTTGGTGACCAAATTTTCACG...............................................................................................................................................................................................................................................................................................................................................................TC----AATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCTTTTCTTGCATTTGGGTCCATTTCTTTTTTGGTATTTGTTTATGCTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGATAATCCGATCCTTGCAGCCATACAGAACGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAAGATCGTTATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTGCTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCCTAGTAATGATAAATGGAGATACTTTCACTATTAAAGTGTAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403425" ref_strand="+" ref_description="SGN-E403425 [PPC-10-H11]">
      <seq>ctctaacgttttacagtattgggatttcttcaattgttcttttcactgtttcttttggtgggtttgattcagaaaactcgaagctttttttgaagaacagagaaggaaatagatatgggtctgctcagattgcagttttggtgaccaaattttcacgtcaattttcaagtatcaaatggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcttttcttgcatttgggtccatttcttttttggtatttgtttatgctgctattgtctccaagttgcttccgccattcgataatccgatccttgcagccatacagaacgacagatactattgctttctggttccattaacgcttcccatccttgttgttgctatatatttccactggctcagcatgaagatctttaagcatgcatagctcagacgaggtatggagcttttgtgtaatctcacgaaggatcgttatcaattggttaggtttctgattccaagttgtttgcttgaaacatttgacatgagtagaatgagataagttttcatagtaatgataaatgaagatactttcactattaaagtgtagttattttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4592" stop="7453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4858" g_stop="5014" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.847"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351">
            <donor d_prob="0.823" d_score="0.94"/>
            <acceptor a_prob="0.741" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5548" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="336" r_length="179" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6890" g_stop="7151" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="598" r_length="262" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="601" polyA_stop="615"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E403425" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4858" e_stop="5014"/>
          <exon e_start="5366" e_stop="5548"/>
          <exon e_start="6890" e_stop="7151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAG-GTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACGGTTTGTGCTAAACCCTTTTCGATTTTCTTGCTCAATTTGCTTGTATCAGTGAAAATTTCCATGAAAGATTGGATCTTTTTGTTGCTTTGTCGATTATGAAATCACCCAAATTAGCAAAATCTATTTTTGCTGCTTTTTCTGATATGGGTTATGCTGAGACAGCAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAGGTGACTTTCCCTTTGTTCAATTTTATCCAGTTTCTGTTATTTAGTCAAATTAGCTTATGCCTGGCTGTATTGATAGCTATTGGGAATTATTATAATGTAGTGCTTAGTGAAATGCAAACTGTTATTGAGCCTTATCCGGATTGTTTGTCGCTGTTTCACTTTAGAAACTGATTGTTTAGATAAAATTATCTCTAAATTTAGGGATTTGTAAGGAACTTGACACTGTGACATTGTTTTGTAGATCATAAACTGAGTTGAGGTATCGAGATTTTAGATAGTGTTTTGGGATAATAAATGGGTTTGTTCACTTACTATTTATGAATGTTCTTTTGCTGTCCACTGTGTTTGTTACTCTTGACAAATTGTATGATTGGCCTGTTGGTAATAGTTGTTCACAAATTGTATAGATCATAACTTACCGGTTTGGGATCATTTATGCTCTAACTGCAGGGATGTTGATCCCACTCCCATTTAAACTTATTTTACTAGGATCTCGTCTCCATGAAACTTGCATTCATATTTGTGACACTTCTGTCTGTTTAATAATTATCTCGTCTCCCCTTTTTGAAAAATAAAGAGATTTTATCTAGTTCATTGGAAAGGTACTTTTTGGGATTCTGCTTTTAATCATCATGGATATAGAAAGAAGATTACTTAGAAGCCGATGCTGCTGGTCGAAATGTATTATGCTTTCCATACGACCTATAGCTCTTCAGTAAGTTACAACTCGAACATCTAACTGCTTGTGGTTTCAATAAAAAAGTTAATATGCTTAAGAGGTTTACAACTACATGGGTCTCTTCCAACCAGTTAACTGAAAGATCAATTTTGAATAGAAACACTTCCATTTTCTTACTTATTCATCACTCACATTGAGCCGAAGCATTGATTTGGTAGTACCAGACCAGTACTTCTCAATTCTGGATGCTTACATTCATTGTTAATGCATTAGCCAGCTTGCAGCATAATATTACGTACTGGTATGATGATTTGGTAAAAGTTGATTCGATTATGTTATCTTAATACTTTAGTTATACAAGAGTCTTCATTAACTGAATTCGACTTCGTCAATAAAAAGCGGTTATGGCATGAGTGGAATTGTTATTTGGAAAGGAGGATTCTATGAGATATCTTTCTGATTTTGTGATGGTTGTTAGTCTAATATAATCACCGTGCTATAATCAAAATCTTACTAAATGCTTGATGGGTTTTGTAGCTGGACTATCTCATGTTCAATAGTTTACGAATATTCTTCTTCCCCTTATCCCAAATTATCACGTTTGTGTTGGTATAAATAGCGCTTTTAGCCTGTGTTTGAGTTATTTTGTATTTCTGTTTCAGATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTT</genome_strand>
        <mrna_strand>CTCTAACGTTTTACAGTATTGGGATTTCTTCAATT-GTTCTTTTCACTGTTTCTTTTGGTGGGTTTGATTCAGAAAACTCGAAGCTTTTTTTGAAGAACAGAGAAGGAAATAGATATGGGTCTGCTCAGATTGCAGTTTTGGTGACCAAATTTTCACG...............................................................................................................................................................................................................................................................................................................................................................TC----AATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCTTTTCTTGCATTTGGGTCCATTTCTTTTTTGGTATTTGTTTATGCTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGATAATCCGATCCTTGCAGCCATACAGAACGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTTATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTGCTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCATAGTAATGATAAATGAAGATACTTTCACTATTAAAGTGTAGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433413" ref_strand="-" ref_description="SGN-E433413 [STM-58-O6]">
      <seq>ctctaagttttacagtatgggattcttcaattgtcttttcactgtttcttttggtgggttgattcagaaaactcgaagcttttttgaagaccagagaaggaaatagatatgggtctgctcagattgcagtttttgtgaccaaatttttcacgtcaattttcaagtatcaaatggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcttttcttgcatttgggtccatttcttttttggtatttgtttatgctgctattgtctccaagttgcttccgccattcgataatccgatccttgcagccatacagaacgacagatactattgctttctggttccattaacgcttcccatccttgttgttgctatatatttccactggctcagcatgaagatctttaagcatgcatagctcagacgaggtatggagcttttgtgtaatctcacgaaggatcgttatcaattggttaggtttctgattccaagttgtttgcttgaaacatttgacatgagtagaatgagataagttttcatagtaatgataaatgaagatactttcactatgagtgagtagttatttcaaaacacccatttgttttataaaaactcgagggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4592" stop="7453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4891" g_stop="5014" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="152" r_length="123" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351">
            <donor d_prob="0.823" d_score="0.90"/>
            <acceptor a_prob="0.741" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5548" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="331" r_length="179" r_score="0.945"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6890" g_stop="7153" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="595" r_length="264" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E433413" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E433413" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4891" e_stop="5014"/>
          <exon e_start="5366" e_stop="5548"/>
          <exon e_start="6890" e_stop="7153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACC-AATTTTTCACGGTTTGTGCTAAACCCTTTTCGATTTTCTTGCTCAATTTGCTTGTATCAGTGAAAATTTCCATGAAAGATTGGATCTTTTTGTTGCTTTGTCGATTATGAAATCACCCAAATTAGCAAAATCTATTTTTGCTGCTTTTTCTGATATGGGTTATGCTGAGACAGCAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAGGTGACTTTCCCTTTGTTCAATTTTATCCAGTTTCTGTTATTTAGTCAAATTAGCTTATGCCTGGCTGTATTGATAGCTATTGGGAATTATTATAATGTAGTGCTTAGTGAAATGCAAACTGTTATTGAGCCTTATCCGGATTGTTTGTCGCTGTTTCACTTTAGAAACTGATTGTTTAGATAAAATTATCTCTAAATTTAGGGATTTGTAAGGAACTTGACACTGTGACATTGTTTTGTAGATCATAAACTGAGTTGAGGTATCGAGATTTTAGATAGTGTTTTGGGATAATAAATGGGTTTGTTCACTTACTATTTATGAATGTTCTTTTGCTGTCCACTGTGTTTGTTACTCTTGACAAATTGTATGATTGGCCTGTTGGTAATAGTTGTTCACAAATTGTATAGATCATAACTTACCGGTTTGGGATCATTTATGCTCTAACTGCAGGGATGTTGATCCCACTCCCATTTAAACTTATTTTACTAGGATCTCGTCTCCATGAAACTTGCATTCATATTTGTGACACTTCTGTCTGTTTAATAATTATCTCGTCTCCCCTTTTTGAAAAATAAAGAGATTTTATCTAGTTCATTGGAAAGGTACTTTTTGGGATTCTGCTTTTAATCATCATGGATATAGAAAGAAGATTACTTAGAAGCCGATGCTGCTGGTCGAAATGTATTATGCTTTCCATACGACCTATAGCTCTTCAGTAAGTTACAACTCGAACATCTAACTGCTTGTGGTTTCAATAAAAAAGTTAATATGCTTAAGAGGTTTACAACTACATGGGTCTCTTCCAACCAGTTAACTGAAAGATCAATTTTGAATAGAAACACTTCCATTTTCTTACTTATTCATCACTCACATTGAGCCGAAGCATTGATTTGGTAGTACCAGACCAGTACTTCTCAATTCTGGATGCTTACATTCATTGTTAATGCATTAGCCAGCTTGCAGCATAATATTACGTACTGGTATGATGATTTGGTAAAAGTTGATTCGATTATGTTATCTTAATACTTTAGTTATACAAGAGTCTTCATTAACTGAATTCGACTTCGTCAATAAAAAGCGGTTATGGCATGAGTGGAATTGTTATTTGGAAAGGAGGATTCTATGAGATATCTTTCTGATTTTGTGATGGTTGTTAGTCTAATATAATCACCGTGCTATAATCAAAATCTTACTAAATGCTTGATGGGTTTTGTAGCTGGACTATCTCATGTTCAATAGTTTACGAATATTCTTCTTCCCCTTATCCCAAATTATCACGTTTGTGTTGGTATAAATAGCGCTTTTAGCCTGTGTTTGAGTTATTTTGTATTTCTGTTTCAGATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCA</genome_strand>
        <mrna_strand>ATTG-TCTTTTCACTGTTTCTTTTGGTGGGT-TGATTCAGAAAACTCGAAGCTTTTTTGAAGACCAGAGAAGGAAATAGATATGGGTCTGCTCAGATTGCAGTTTTTGTGACCAAATTTTTCACG...............................................................................................................................................................................................................................................................................................................................................................TC----AATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCTTTTCTTGCATTTGGGTCCATTTCTTTTTTGGTATTTGTTTATGCTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGATAATCCGATCCTTGCAGCCATACAGAACGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTTATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTGCTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCATAGTAATGATAAATGAAGATACTTTCACTATGAGTGAGTAGTTATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E342013" ref_strand="+" ref_description="SGN-E342013 [cTOF-10-K20]">
      <seq>agttttggtgacaaatttttcacgtctgtgaattttcaagtatcaaatgggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcgtttcttgcatttgggtccatttcctttttggtatttgtttatgttgctattgtctccaagttgcttccgccattcgacaatccgatccttgcagccattcagaatgacagatactattgctttctggttccattaacgcttcccatccttgttgttgctatatatttccactggctcagcatgaagatctttaagcatgcatagctcagacgaggtatggagcttttgtgtaatctcacgaaggatcgtcatcaattggttaggtttctgattccaagttgtttacttgaaacatttgacatgagtagaatgagataagttttcgtagtaatgacaaacgaagatactttcactattaaagtgtagttatttcagccccttttgtgtttctgcatttcccggaacttcagaagttaagaggacaaaatcgcgagcttccttcaaataaataatttgcataaatcaatacttgcttctatccaagatttttgatgaaggaaccgcttatgaagaagacatttangctactaaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="5057" stop="7616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5177" g_stop="5200" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.708"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5201" i_stop="5365" i_length="165">
            <donor d_prob="0.723" d_score="0.00"/>
            <acceptor a_prob="0.741" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5548" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="208" r_length="184" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6890" g_stop="7316" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="635" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E342013" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5177" e_stop="5200"/>
          <exon e_start="5366" e_stop="5548"/>
          <exon e_start="6890" e_stop="7316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAAT-GGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAGGTGACTTTCCCTTTGTTCAATTTTATCCAGTTTCTGTTATTTAGTCAAATTAGCTTATGCCTGGCTGTATTGATAGCTATTGGGAATTATTATAATGTAGTGCTTAGTGAAATGCAAACTGTTATTGAGCCTTATCCGGATTGTTTGTCGCTGTTTCACTTTAGAAACTGATTGTTTAGATAAAATTATCTCTAAATTTAGGGATTTGTAAGGAACTTGACACTGTGACATTGTTTTGTAGATCATAAACTGAGTTGAGGTATCGAGATTTTAGATAGTGTTTTGGGATAATAAATGGGTTTGTTCACTTACTATTTATGAATGTTCTTTTGCTGTCCACTGTGTTTGTTACTCTTGACAAATTGTATGATTGGCCTGTTGGTAATAGTTGTTCACAAATTGTATAGATCATAACTTACCGGTTTGGGATCATTTATGCTCTAACTGCAGGGATGTTGATCCCACTCCCATTTAAACTTATTTTACTAGGATCTCGTCTCCATGAAACTTGCATTCATATTTGTGACACTTCTGTCTGTTTAATAATTATCTCGTCTCCCCTTTTTGAAAAATAAAGAGATTTTATCTAGTTCATTGGAAAGGTACTTTTTGGGATTCTGCTTTTAATCATCATGGATATAGAAAGAAGATTACTTAGAAGCCGATGCTGCTGGTCGAAATGTATTATGCTTTCCATACGACCTATAGCTCTTCAGTAAGTTACAACTCGAACATCTAACTGCTTGTGGTTTCAATAAAAAAGTTAATATGCTTAAGAGGTTTACAACTACATGGGTCTCTTCCAACCAGTTAACTGAAAGATCAATTTTGAATAGAAACACTTCCATTTTCTTACTTATTCATCACTCACATTGAGCCGAAGCATTGATTTGGTAGTACCAGACCAGTACTTCTCAATTCTGGATGCTTACATTCATTGTTAATGCATTAGCCAGCTTGCAGCATAATATTACGTACTGGTATGATGATTTGGTAAAAGTTGATTCGATTATGTTATCTTAATACTTTAGTTATACAAGAGTCTTCATTAACTGAATTCGACTTCGTCAATAAAAAGCGGTTATGGCATGAGTGGAATTGTTATTTGGAAAGGAGGATTCTATGAGATATCTTTCTGATTTTGTGATGGTTGTTAGTCTAATATAATCACCGTGCTATAATCAAAATCTTACTAAATGCTTGATGGGTTTTGTAGCTGGACTATCTCATGTTCAATAGTTTACGAATATTCTTCTTCCCCTTATCCCAAATTATCACGTTTGTGTTGGTATAAATAGCGCTTTTAGCCTGTGTTTGAGTTATTTTGTATTTCTGTTTCAGATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTAGGCTACTAAATCATC</genome_strand>
        <mrna_strand>AGTTTTGGTGACAAATTTTTCACG.....................................................................................................................................................................TCTGTGAATTTTCAAGTATCAAATGGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTANGCTACTAAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217727" ref_strand="+" ref_description="SGN-E217727 [cLEL-25-I1](-)">
      <seq>actaagcataccagtgcattgacactccaggtcctaggcaatgcaaaaggtgcagttgctgtatgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgactgtgatgggagttgttgcttatggagaatccaaaagaaggcacaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaatggtccttatattatatgtttacatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="9908" stop="7978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9608" g_stop="9579" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8732" g_stop="8279" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="485" r_length="455" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="486" polyA_stop="499"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217727" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9608" e_stop="9579"/>
          <exon e_start="8732" e_stop="8279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAGCATACCAGTGCATTGACACTCCAGGTTTGCTCCTCTCCTACCCCTCTTTTTTCCCCTTTAAGTGTAGTGTTATGTGGCAAAAGAAAGATGAAAGCAGAATGATAACCGATGGATGTGGTGGAGTGGTTGGAAATATATTATCCTTAATCAAAAGTCTCGAGTTCAAGTCTGAACCTAGGAATAAAGAACCTTATCGTAGATAGCATTGGCCACTATAGACCACTCCTGGATTAGCATATGTTTTTGTTCTCTTAACTCGACATATTTCTTTAGACTTAAACACGAATGATCACGCCTAGTCTCTGGCCAAGAAAGATTATTTTTTTAAATACATTGTTTGAACACGACTTCCAAATACCCTTTAAACTTCAACCAAATACTATATTGCTCCGACTCTTCAAAAATGCAACCAAGTGTGTATCAAATCCTCCAAAAGTAATGCATCTTTAGAAGATCTGTCAAGATGCAACAACATTCTTTGGTGAGTCTGTGAAACATCAACCAAATACTGTCTAAACACCTACTATTGCCCTTTAGGGTGGCCCAGTGGTTTGGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCAAAAGCAAGGGTTTGTCTTCTGGGTCGAGCTCCTCGCACCAGATTTGTCTAGTGCAGGTTACATCTATATGTGGTTTGCGAGTTATTGCATAAGAGCGGGGATTTTATCGTGTATGCACCCAAGTATAGCGGTTTCGAGTTTCCCTTGTCATCCCCCCTGCCAAAAAAAAAAAAACACCTACTATATTTTTCAAGAATGGTTACTAAATTCTCATAGTAGCTGCAAATGTAACATATTTTTCACTTGTTTGAAATAACTTAACTCTCTATGGACTGGTGCAGGTCCTAGGCAATGCAAAAGGTGCAGTTGCTGT-TGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTTAAA</genome_strand>
        <mrna_strand>ACTAAGCATACCAGTGCATTGACACTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTATGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217680" ref_strand="+" ref_description="SGN-E217680 [cLEL-25-I13](-)">
      <seq>aaaggtgcagttgctgttgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgactgtgatgggagttgttgcttatggagaatccaaaagaaggcacaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaatggtccttatattatatgtttacatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="9017" stop="7978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8717" g_stop="8279" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="453"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217680" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217680" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8717" e_stop="8279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTTAAA</genome_strand>
        <mrna_strand>AAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220933" ref_strand="+" ref_description="SGN-E220933 [cLEL-22-D6](-)">
      <seq>gactaagcataccagtgcattgacactccaggtcctaggcaatgcaaaaggtgcagttgctgttgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgactgtgatgggagttgttgcttatggagaatccaaaagaaggcacaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="9909" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9609" g_stop="9579" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8732" g_stop="8310" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="454" r_length="423" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="469"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E220933" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9609" e_stop="9579"/>
          <exon e_start="8732" e_stop="8310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAGCATACCAGTGCATTGACACTCCAGGTTTGCTCCTCTCCTACCCCTCTTTTTTCCCCTTTAAGTGTAGTGTTATGTGGCAAAAGAAAGATGAAAGCAGAATGATAACCGATGGATGTGGTGGAGTGGTTGGAAATATATTATCCTTAATCAAAAGTCTCGAGTTCAAGTCTGAACCTAGGAATAAAGAACCTTATCGTAGATAGCATTGGCCACTATAGACCACTCCTGGATTAGCATATGTTTTTGTTCTCTTAACTCGACATATTTCTTTAGACTTAAACACGAATGATCACGCCTAGTCTCTGGCCAAGAAAGATTATTTTTTTAAATACATTGTTTGAACACGACTTCCAAATACCCTTTAAACTTCAACCAAATACTATATTGCTCCGACTCTTCAAAAATGCAACCAAGTGTGTATCAAATCCTCCAAAAGTAATGCATCTTTAGAAGATCTGTCAAGATGCAACAACATTCTTTGGTGAGTCTGTGAAACATCAACCAAATACTGTCTAAACACCTACTATTGCCCTTTAGGGTGGCCCAGTGGTTTGGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCAAAAGCAAGGGTTTGTCTTCTGGGTCGAGCTCCTCGCACCAGATTTGTCTAGTGCAGGTTACATCTATATGTGGTTTGCGAGTTATTGCATAAGAGCGGGGATTTTATCGTGTATGCACCCAAGTATAGCGGTTTCGAGTTTCCCTTGTCATCCCCCCTGCCAAAAAAAAAAAAACACCTACTATATTTTTCAAGAATGGTTACTAAATTCTCATAGTAGCTGCAAATGTAACATATTTTTCACTTGTTTGAAATAACTTAACTCTCTATGGACTGGTGCAGGTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</genome_strand>
        <mrna_strand>GACTAAGCATACCAGTGCATTGACACTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220909" ref_strand="+" ref_description="SGN-E220909 [cLEL-22-B6](-)">
      <seq>gcaaaaggtgcagttgctgttgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgtctgtgatgggagttgttgcttatggagaatccaaaagaaggcgcaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttagaaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="9020" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8720" g_stop="8310" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="412" polyA_stop="426"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E220909" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8720" e_stop="8310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</genome_strand>
        <mrna_strand>GCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGTCTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCGCAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGAAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221102" ref_strand="+" ref_description="SGN-E221102 [cLEL-22-B16](-)">
      <seq>aatcgcgggctacacaatgactgtgatgggagttgttgcttatggagaatccaaaagaaggcacaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtaaagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgatgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="8955" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8655" g_stop="8310" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="347" polyA_stop="361"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E221102" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8655" e_stop="8310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</genome_strand>
        <mrna_strand>AATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAAAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGATGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221121" ref_strand="+" ref_description="SGN-E221121 [cLEL-22-D16](-)">
      <seq>ggcccaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="8896" stop="8009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8596" g_stop="8310" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="288" polyA_stop="302"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E221121" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>287</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8596" e_stop="8310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</genome_strand>
        <mrna_strand>GGCCCAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362982" ref_strand="+" ref_description="SGN-E362982 [cLPP-2-K8]">
      <seq>gtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacaccctttttttactgcattgtttgcttatttgatgacaaggaagcaagaagcttgggctacttatggttgccttgttcctgttgttactggggttgttattgcaagtgggggtgagccaagcttccacctttatggatttatcatgtgtattggtgcaactgctgctagagcctttaagtctgttcttcaaggagttcttctttcttctgaaggggaaaagctgaactccatgaatctcctgctctacatgtcaccaattgctgtcgcagtattattgcctgctgcactcattatggagcccaatgttatcgatgtcactgcaacactcgcgactgaacacagataccttggcctgcttattgtggttaattccgcaatggcctatggtgccaatttattgaactttttggtgactaagcataccagtgcattgacactccaggtcctaggcaatgcaaaaggtgcagttgctgttgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgactgtgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="12851" stop="8324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12551" g_stop="12367" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12366" i_stop="10159" i_length="2208">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10158" g_stop="10055" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="290" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10054" i_stop="9808" i_length="247">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9807" g_stop="9579" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="519" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8732" g_stop="8624" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="628" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362982" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12551" e_stop="12367"/>
          <exon e_start="10158" e_stop="10055"/>
          <exon e_start="9807" e_stop="9579"/>
          <exon e_start="8732" e_stop="8624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCC-TTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATCGCAAGTGGGGTATGTTTGCAAACTTTCTAACTTGTTCTTTTTCTTAAATGAATAGTTAATTGCTTGTTTTTTTTGGTTTCCGTGTATTCGTATTCATTTTGGAGCTCGACTAATTTGGATTCAATTTTACTTTGGGATAAAACGCTCTAGAGTTTGAAATTGAGACCTTTGGTTAAAAATAAAGAAGTACTTATAGCTCCACTACAACCTTTGTGGTGAATAGTTAATTGTTTTTTTGGTTTCCGTGTTCTCGACCCATTCTCTAGGGAATAAACGTTCGTAAGGCTTGAACACAAGATCTTTGGTTAAAGATGGAGGAATACTTTTTAGGCTACCTTTGGTGGTGAATAGTTAATTGCTTGTTTTCTCTTTTTTTTTTTGGTTTTGTCTTGTCCCATTTTGGGGTTCGACCAATCTAGATTTAGGAGGTTCCACTTTGAGGATAAAACATGCCTAGGGGTTGAACCCGAGCTCGTTGGTTAAAGATGGAGGAATACTTACAACTTCACCAAGACCTTTGGTAATGAAAAGTAAATTGCTTTTATTTTGTTTTCGTATTTTGTACTCATTATGGGCTCGACTCTAGATTTAGGAGGTCCCACTTTGGGGATAAAACATACATAGGGCTCGAATCAAAGACCTTTGGTTAAAAATGATGCAGTACTTGCAACTCACCATGACTTTTGGTGGTGAACATTTAATTGCTTGTCTTTTTTTTTGGGTTTCCGTGTTTTATACCCTATTTTGGCGCTTGACTATTTTGGATTCAGGAGGTCACTTTGGAGGCAATATGCACCTAGGATTCGAACCTGAGACTTATGGTTAAAGATGGAGGAGCACTTATAGCTCCACCGTGGCCTTTATTGTTGAATATTTAATTGCTTGTTACTTGGTATTATATTTAGTTGATCAGGTTGTAGTATGTTTCGTGTAGAAAAATTGGATCTTTTTCTCTTAAAATTTCTATCCTTTTTTGGGCTGTTTAATTTCATTCCTATTAAAGTTGATGTATGATTTTTTTAACAATGGCAGTAGTTCTTTTAGAAGTCTAGATTAACTGATTGAGATCAGATATGAGAATTTTTATGGATGCTCATATCGATACATTATAACGCCTCGACAATTTGTTGTCAGGCAGATCTAGAATTTAAATTTAATGTGTTCAACACATCATAAGTTTTTATCAAGCCCATTATTCATTCAACTTCGAATCTTTCTAGTAATCTTCCACCTGTATATTGATGCCCCTGTCAAAAATACTTTCCTTTGTGAACAATTCTTACCATTTCTGTGTTTTGCAGTAGTTTGCTTTTCTTTTCGATGGAAATTATGTTACTTTCACATTCTATTTCAATTTTCATAAAGAGCACTGGCTTTTTTAAAATGATAGTGTCTTCCTTGACGACGTTTCCATTGGAGATATTCATTAAAGTGAAGTTTGCTCGGTAGAATGTGTTTTTTTCTTATGATAATCATGATGTCCGAGACCCTTCGGAGTGGCCTAGTGGTTTAGGCTTGGACTTTCATGTTGGAGGTCTCAAGTTCGAAATCCCTTGCTAGCGGAAGCAAGGGATTTGTCTTATGAGTCGAGAGTTCATCGCACCAGATTTGCCTAGTGATGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAAGGGGCTTTACCATGTGCGCACCCAAAGGGTAGCGGCTACGGATTTCCCTTGTCATCCAAAAAAAAGTAAACAATCGTGATGTCCGAGCTAGCTTTAGGGTAACTCTGTCTAGCAAAACTTGAAAATATAGGGATAGATCACCTTGTATCTTTGCCTCTCAAGTCTCAATTGAGTGTGTTTTGATGACATATATACAGAATCAAACACTAGATGATAAATATACTTCAAGCAATTCAGAGATTCTCAATGTCTCATGGTATTAATTTAAGATTTTATTCAGTAAGAAATTGATAGTTAAATTACTTACCTTTGTCTTTTGTTGTGTTATATTTGAAGTTTATTAAGCCATGACAAGTATCCATCTATTGGTTGTTGAAATAGGTTTTGTTTTCTTGTTGAAAATTTTGTAGTAACTTTTATTAAGTATTAATCTACCTCCTAAGGTAGCGGTAAGGTTTGCACACACGCTACCCTCCCCAAATTCCACGTGTGGGATTATCCCGGGTATGTTGTTATTGTTGTTTATTGACTATTAAGTTTCTTGATTTGATGATAGGGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTCAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGGGTAAGTACTTTGCGTCTTCTAGCCATCTGTGTGAACGCAAAATACTTTTACCATCACATCATCTAAAAGATAACTAACTACAGGTTACGAGTTTCTGATCTTCTAGGTTCCTCGTTTGATTTACATCTGATAGAGATTGGGGTTCCTTTCAAATTCATGACCCTTCATTCGATTTATTTGTCGTTCGTTTGTTTTGCTGTTACATTTTAACTAGTAGTTTTCTCCTTAACTTGATGTTATCTTTCAGGGAGAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGTAGTGTTATTGCCTGCTGCACTCGTTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAGGTTTGCTCCTCTCCTACCCCTCTTTTTTCCCCTTTAAGTGTAGTGTTATGTGGCAAAAGAAAGATGAAAGCAGAATGATAACCGATGGATGTGGTGGAGTGGTTGGAAATATATTATCCTTAATCAAAAGTCTCGAGTTCAAGTCTGAACCTAGGAATAAAGAACCTTATCGTAGATAGCATTGGCCACTATAGACCACTCCTGGATTAGCATATGTTTTTGTTCTCTTAACTCGACATATTTCTTTAGACTTAAACACGAATGATCACGCCTAGTCTCTGGCCAAGAAAGATTATTTTTTTAAATACATTGTTTGAACACGACTTCCAAATACCCTTTAAACTTCAACCAAATACTATATTGCTCCGACTCTTCAAAAATGCAACCAAGTGTGTATCAAATCCTCCAAAAGTAATGCATCTTTAGAAGATCTGTCAAGATGCAACAACATTCTTTGGTGAGTCTGTGAAACATCAACCAAATACTGTCTAAACACCTACTATTGCCCTTTAGGGTGGCCCAGTGGTTTGGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCAAAAGCAAGGGTTTGTCTTCTGGGTCGAGCTCCTCGCACCAGATTTGTCTAGTGCAGGTTACATCTATATGTGGTTTGCGAGTTATTGCATAAGAGCGGGGATTTTATCGTGTATGCACCCAAGTATAGCGGTTTCGAGTTTCCCTTGTCATCCCCCCTGCCAAAAAAAAAAAAACACCTACTATATTTTTCAAGAATGGTTACTAAATTCTCATAGTAGCTGCAAATGTAACATATTTTTCACTTGTTTGAAATAACTTAACTCTCTATGGACTGGTGCAGGTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAG</genome_strand>
        <mrna_strand>GTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATTGCAAGTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTTAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGG.......................................................................................................................................................................................................................................................GGAAAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGCAGTATTATTGCCTGCTGCACTCATTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359829" ref_strand="+" ref_description="SGN-E359829 [cLPP-9-C20]">
      <seq>agaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttgtcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacacccttttttactgcattgtttgcttatttgatgacaaggaagcaagaagcttgggctacttatggttgccttgttcctgttgttactggggttgttattgcaagtgggggtgagccaagcttccacctttatggatttatcatgtgtattggtgcaactgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13366" stop="9802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13066" g_stop="12367" g_length="700"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12366" i_stop="10159" i_length="2208">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10158" g_stop="10102" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="763" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E359829" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13066" e_stop="12367"/>
          <exon e_start="10158" e_stop="10102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAA--CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATCGCAAGTGGGGTATGTTTGCAAACTTTCTAACTTGTTCTTTTTCTTAAATGAATAGTTAATTGCTTGTTTTTTTTGGTTTCCGTGTATTCGTATTCATTTTGGAGCTCGACTAATTTGGATTCAATTTTACTTTGGGATAAAACGCTCTAGAGTTTGAAATTGAGACCTTTGGTTAAAAATAAAGAAGTACTTATAGCTCCACTACAACCTTTGTGGTGAATAGTTAATTGTTTTTTTGGTTTCCGTGTTCTCGACCCATTCTCTAGGGAATAAACGTTCGTAAGGCTTGAACACAAGATCTTTGGTTAAAGATGGAGGAATACTTTTTAGGCTACCTTTGGTGGTGAATAGTTAATTGCTTGTTTTCTCTTTTTTTTTTTGGTTTTGTCTTGTCCCATTTTGGGGTTCGACCAATCTAGATTTAGGAGGTTCCACTTTGAGGATAAAACATGCCTAGGGGTTGAACCCGAGCTCGTTGGTTAAAGATGGAGGAATACTTACAACTTCACCAAGACCTTTGGTAATGAAAAGTAAATTGCTTTTATTTTGTTTTCGTATTTTGTACTCATTATGGGCTCGACTCTAGATTTAGGAGGTCCCACTTTGGGGATAAAACATACATAGGGCTCGAATCAAAGACCTTTGGTTAAAAATGATGCAGTACTTGCAACTCACCATGACTTTTGGTGGTGAACATTTAATTGCTTGTCTTTTTTTTTGGGTTTCCGTGTTTTATACCCTATTTTGGCGCTTGACTATTTTGGATTCAGGAGGTCACTTTGGAGGCAATATGCACCTAGGATTCGAACCTGAGACTTATGGTTAAAGATGGAGGAGCACTTATAGCTCCACCGTGGCCTTTATTGTTGAATATTTAATTGCTTGTTACTTGGTATTATATTTAGTTGATCAGGTTGTAGTATGTTTCGTGTAGAAAAATTGGATCTTTTTCTCTTAAAATTTCTATCCTTTTTTGGGCTGTTTAATTTCATTCCTATTAAAGTTGATGTATGATTTTTTTAACAATGGCAGTAGTTCTTTTAGAAGTCTAGATTAACTGATTGAGATCAGATATGAGAATTTTTATGGATGCTCATATCGATACATTATAACGCCTCGACAATTTGTTGTCAGGCAGATCTAGAATTTAAATTTAATGTGTTCAACACATCATAAGTTTTTATCAAGCCCATTATTCATTCAACTTCGAATCTTTCTAGTAATCTTCCACCTGTATATTGATGCCCCTGTCAAAAATACTTTCCTTTGTGAACAATTCTTACCATTTCTGTGTTTTGCAGTAGTTTGCTTTTCTTTTCGATGGAAATTATGTTACTTTCACATTCTATTTCAATTTTCATAAAGAGCACTGGCTTTTTTAAAATGATAGTGTCTTCCTTGACGACGTTTCCATTGGAGATATTCATTAAAGTGAAGTTTGCTCGGTAGAATGTGTTTTTTTCTTATGATAATCATGATGTCCGAGACCCTTCGGAGTGGCCTAGTGGTTTAGGCTTGGACTTTCATGTTGGAGGTCTCAAGTTCGAAATCCCTTGCTAGCGGAAGCAAGGGATTTGTCTTATGAGTCGAGAGTTCATCGCACCAGATTTGCCTAGTGATGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAAGGGGCTTTACCATGTGCGCACCCAAAGGGTAGCGGCTACGGATTTCCCTTGTCATCCAAAAAAAAGTAAACAATCGTGATGTCCGAGCTAGCTTTAGGGTAACTCTGTCTAGCAAAACTTGAAAATATAGGGATAGATCACCTTGTATCTTTGCCTCTCAAGTCTCAATTGAGTGTGTTTTGATGACATATATACAGAATCAAACACTAGATGATAAATATACTTCAAGCAATTCAGAGATTCTCAATGTCTCATGGTATTAATTTAAGATTTTATTCAGTAAGAAATTGATAGTTAAATTACTTACCTTTGTCTTTTGTTGTGTTATATTTGAAGTTTATTAAGCCATGACAAGTATCCATCTATTGGTTGTTGAAATAGGTTTTGTTTTCTTGTTGAAAATTTTGTAGTAACTTTTATTAAGTATTAATCTACCTCCTAAGGTAGCGGTAAGGTTTGCACACACGCTACCCTCCCCAAATTCCACGTGTGGGATTATCCCGGGTATGTTGTTATTGTTGTTTATTGACTATTAAGTTTCTTGATTTGATGATAGGGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCT</genome_strand>
        <mrna_strand>AGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATTGCAAGTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364910" ref_strand="+" ref_description="SGN-E364910 [cLPP-17-C21]">
      <seq>tcttgtggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttgtcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacaccctttttttactgcattgtttgcttatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13387" stop="12141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13087" g_stop="12441" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E364910" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E364910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13087" e_stop="12441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC----AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCC-TTTTTTACTGCATTGTTTGCTTATTTGATGA</genome_strand>
        <mrna_strand>TCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTTACTGCATTGTTTGCTTATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362855" ref_strand="+" ref_description="SGN-E362855 [cLPP-2-N15]">
      <seq>aagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttgtcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacacccttttttactgcattgtttgcttatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13377" stop="12141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13077" g_stop="12441" g_length="637"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362855" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13077" e_stop="12441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGA</genome_strand>
        <mrna_strand>AAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360298" ref_strand="+" ref_description="SGN-E360298 [cLPP-8-G5]">
      <seq>gaagaagagaggcacacagataacacaattgcttctctttctgccactttcatacattccccacaaaaaaggtcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgatcttagctatgtttctattgatttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttgtcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacaccctttttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13368" stop="12163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13068" g_stop="12463" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E360298" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13068" e_stop="12463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCC-TTTTTTACT</genome_strand>
        <mrna_strand>GAAGAAGAGAGGCACACAGATAACACAATTGCTTCTCTTTCTGCCACTTTCATACATTCCCCACAAAAAAGGTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGATCTTAGCTATGTTTCTATTGATTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362587" ref_strand="+" ref_description="SGN-E362587 [cLPP-1-F11]">
      <seq>tggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttggcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13382" stop="12194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13082" g_stop="12494" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362587" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13082" e_stop="12494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAAA-TTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCA</genome_strand>
        <mrna_strand>TGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGGCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331438" ref_strand="+" ref_description="SGN-E331438 [cTOD-9-F24]">
      <seq>gaaaaaggaagatgagaggcacacaaataacacaattgcttctctttcttccacttacatacattccccacaaaaaagttcccaaacacacacacacactgaaaatcaaatttttttcaagaaataaatcttgaaaatctgttgagaaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgataaaatcaagaatcaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttaaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacccttagtgttgtcttttgtggttctgttgttggtggaaacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13375" stop="12224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13075" g_stop="12524" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E331438" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13075" e_stop="12524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAACACACACACACACTGAAAATCAAATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATCAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTC</genome_strand>
        <mrna_strand>GAAAAAGGAAGATGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAACACACACACACACTGAAAATCAAATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC--AAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361279" ref_strand="+" ref_description="SGN-E361279 [cLPP-15-G11]">
      <seq>agaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttaatgttgtcttttgtgggtctgttgttggtgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13361" stop="12230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13061" g_stop="12530" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E361279" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13061" e_stop="12530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAA--CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAA</genome_strand>
        <mrna_strand>AGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAATGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363693" ref_strand="+" ref_description="SGN-E363693 [cLPP-3-N12]">
      <seq>gaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13275" stop="12270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12975" g_stop="12570" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E363693" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12975" e_stop="12570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC----AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTA</genome_strand>
        <mrna_strand>GAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362946" ref_strand="+" ref_description="SGN-E362946 [cLPP-2-O17]">
      <seq>aagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13364" stop="12271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13064" g_stop="12571" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362946" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13064" e_stop="12571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAA--CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCT</genome_strand>
        <mrna_strand>AAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363301" ref_strand="+" ref_description="SGN-E363301 [cLPP-4-O12]">
      <seq>aggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13370" stop="12280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="12580" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E363301" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="12580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC-AAA-CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC----AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTA</genome_strand>
        <mrna_strand>AGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362421" ref_strand="+" ref_description="SGN-E362421 [cLPP-10-P6]">
      <seq>aaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcataccattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13374" stop="12326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13074" g_stop="12626" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362421" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13074" e_stop="12626"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATA-CATTCCCCACAAAAAAGTTCCC-AAA-CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTT</genome_strand>
        <mrna_strand>AAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACCATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362021" ref_strand="+" ref_description="SGN-E362021 [cLPP-11-D6]">
      <seq>tggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13382" stop="12336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13082" g_stop="12636" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362021" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13082" e_stop="12636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAAA-TTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTA</genome_strand>
        <mrna_strand>TGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360217" ref_strand="+" ref_description="SGN-E360217 [cLPP-14-E18]">
      <seq>aagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgggctgttcttagctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13377" stop="12343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13077" g_stop="12643" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E360217" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13077" e_stop="12643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTAT</genome_strand>
        <mrna_strand>AAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGGGCTGTTCTTAGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363463" ref_strand="+" ref_description="SGN-E363463 [cLPP-4-O24]">
      <seq>aggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttaaagaaataaatcttgaaaatctgttgagtaaagggcggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtacctcaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaaatgttatctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13370" stop="12356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13070" g_stop="12656" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E363463" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13070" e_stop="12656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC-AAA-CACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC----AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGC</genome_strand>
        <mrna_strand>AGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTAAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGCGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTCAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAAATGTTATCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361917" ref_strand="+" ref_description="SGN-E361917 [cLPP-11-E7]">
      <seq>gaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattataaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13368" stop="12360"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13068" g_stop="12660" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E361917" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13068" e_stop="12660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCA--AACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTT</genome_strand>
        <mrna_strand>GAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTATAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360022" ref_strand="+" ref_description="SGN-E360022 [cLPP-9-D2]">
      <seq>aacatttgggtcttgtggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13397" stop="12367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13097" g_stop="12667" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E360022" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13097" e_stop="12667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATG</genome_strand>
        <mrna_strand>AACATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363960" ref_strand="+" ref_description="SGN-E363960 [cLPP-16-A6]">
      <seq>gaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13375" stop="12384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13075" g_stop="12684" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E363960" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13075" e_stop="12684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTC</genome_strand>
        <mrna_strand>GAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359746" ref_strand="+" ref_description="SGN-E359746 [cLPP-5-B4]">
      <seq>tcttgtggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13387" stop="12431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13087" g_stop="12730" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E359746" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13087" e_stop="12730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTA</genome_strand>
        <mrna_strand>TCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362102" ref_strand="+" ref_description="SGN-E362102 [cLPP-11-C22]">
      <seq>gaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaaaggttttttcatagctacacttataacattttggtattcctcaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13368" stop="12445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13068" g_stop="12745" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E362102" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13068" e_stop="12745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCA--AACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATCAAAAAA---AAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATT</genome_strand>
        <mrna_strand>GAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAAGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363203" ref_strand="+" ref_description="SGN-E363203 [cLPP-19-K6]">
      <seq>tcttgtggggaataaaaaagaagaagagaggctcacaaatatcacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatttgttgagtaaaaggtggattgatcaattactgagatttttcttgtagtttcaacaaaaaggtaccttaaaaatcgaatctttttgccatttttgacaaaaatcaagaatcaaaaaaaaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13387" stop="12519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13087" g_stop="12815" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E363203" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E363203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13087" e_stop="12815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGA-TAAAATCAAGAATCAAAAAAAAATGTT</genome_strand>
        <mrna_strand>TCTTGTGGGGAATAAAAAAGAAGAAGAGAGGCTCACAAATATCACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATTTGTTGAGTAAAAGGTGGATTGATCAATTACTGAGATTTTTCTTGTAGTTTCAACAAAAAGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAAATCAAGAATCAAAAAAAAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262503" ref_strand="+" ref_description="SGN-E262503 [cLEG-56-N20]">
      <seq>aaaaatattttaaatttaaaattttaatatatagtgtggtgattcacatattttctgtggtgaacttccatgttattgaactgaatgtttgttggatcatgcaattataaaatttggagatagtaattttttttaatggagaaaggattagtggtgtatgattcgaattttgatggataatggattgttatatatttatttgtttaaatgtcatattaatttgtttgtatgatgtgcatctaacttacatgtcatgttattttacgtttttactgtcgaaggcaatataggagataaatttatcaatagagagttttgataataccttggtattcaaacattataatttgttagtaatttatgaattttgttttcttatttttttccatttgtagaagtttgctcatatcaattgaaatgtttgagcttatgatatttatagtatatggtaaaaagaatacatcaattatccttttttttatgagttctgtcccataattatgtatttgtttcatttatctatctaattattatattttttgtgagtttatattttgactatttattgttttatttacgtacttaagctagcactctctttgttagacatatctcgatgacgacttggccaatatatatggttgttataaattgagaagaatatttgatcaactcaccatcaagatattatgatttaataccgangaagtaatgatttaaatagatataagaaataatgaatagttaaagtatgaaattcgtgaaaaaaaataattttttcatggtgtgcttttgatctaaatcatctttattttgtaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="12963" stop="14387"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13263" g_stop="14087" g_length="825"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="823" r_length="823" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E262503" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13263" e_stop="14087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTTAAATTTAAAATTTTAATATATAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGAGGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTGAAAAAAAAATAATTTTTTCATGGTGTGCTTTTGATCTAAAATCATCTTTATTTTGTAATTGA</genome_strand>
        <mrna_strand>AAAAATATTTTAAATTTAAAATTTTAATATATAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGANGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTG-AAAAAAAATAATTTTTTCATGGTGTGCTTTTGATCT-AAATCATCTTTATTTTGTAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251594" ref_strand="+" ref_description="SGN-E251594 [cLEG-9-F4]">
      <seq>aaaaatattttaaatttaaaattttaatatatagtgtggtgattcacatattttctgtggtgaacttccatgttattgaactgaatgtttgttggatcatgcaattataaaatttggagatagtaattttttttaatggagaaaggattagtggtgtatgattcgaattttgatggataatggattgttatatatttatttgtttaaatgtcatattaatttgtttgtatgatgtgcatctaacttacatgtcatgttattttacgtttttactgtcgaaggcaatataggagataaatttatcaatagagagttttgataataccttggtattcaaacattataatttgttagtaatttatgaattttgttttcttatttttttccatttgtagaagtttgctcatatcaattgaaatgtttgagcttatgatatttatagtatatggtaaaaagaatacatcaattatccttttttttatgagttctgtcccataattatgtatttgtttcatttatctatctaattattatattttttgtgagtttatattttgactatttattgttttatttacgtacttaagctagcactctctttgttagacatatctcgatgacgacttggccaatatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="12963" stop="14202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13263" g_stop="13902" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E251594" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13263" e_stop="13902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATATTTTAAATTTAAAATTTTAATATATAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATG</genome_strand>
        <mrna_strand>AAAAATATTTTAAATTTAAAATTTTAATATATAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218895" ref_strand="+" ref_description="SGN-E218895 [cLEL-18-J13](-)">
      <seq>ggcaccaggagatcatctatcatgggatattagaggggaataatatccttaagggtacattgtgcattcagaaaatgtagttttgagcattgatgatgataatgaagttgagctacaaaatgcagtgaaaaatgcatcaggcaatctgtttcgatttgatgcacatgtaaccgagtacaccagctatgtcgatattgccactatgtcctgttctgcagggagctgagagtgaatggatctagcttggacgagctccgactttgttttcctgtactaaagaaactggtaaaacattcctaaacatatttcatataataagctgcaataaaaagaatagacaattgctatcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="24699" stop="22306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24409" g_stop="24338" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24337" i_stop="22893" i_length="1445">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22892" g_stop="22614" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="349" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="367"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E218895" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24409" e_stop="24338"/>
          <exon e_start="22892" e_stop="22614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACACTGATTGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCAGTAAGTCTGTTGATCTTCTTCTTGTTTTATTTCTTACCGATTCTGATATATTTTTGCAGGTTTTAGTTTTGTGAATTAATTTATGTTTTTCTATTATTCACTATTTTGATTAAAACTTTGATAATTTCGTAGATCAAAAACACTGATTTTAAACACAAATCGGCTAAGAAATGTAATTGATAGAGTACTCTTGTTATCGAGGAGGCGAAAAATTGATTAAGTTAATGAAAATATTTCGTCAAATTAGCCTTTTATGAGTTTAATATTGTTTTACACCTAACTACTTTTTAGTTTTTAGAAGTTTCAATCATGCTACTCTAAACTTAAGCATGTGATCGAATTTCATATCATCCCAAAAATCAAGTGATTTGATATATGAGAATTACTTACCATTATTAATTTGATTTTTTGATGGGATATCAATTAGCTCTCATTAGTGATATTATCAAATTACTGTCGATTTTGACTAGAATAGAAAGGAAGAATTACCTAGTATTTATTCGTCTCTCGACTATTATACTGCCTAACTTGACTTGATTGCTATTCTTATGGAAATTTTTGATTGAGTGAAATTTGTTGCTTGATTTGTTTTTGATCTTGTGAATATTCAATATTATTAATAACTTGATATGAACATGCATCTATCTTGATATAAAAAGGTAAGTAGGAATAAATTTTGGGCAAGATACATTATATATATATTTTTTATCTATTTACAAATAATTCCTCTATATAAAGCTCCACTTGATACATGTATATTACCAAATTTTCATCTTTATTATGGAAAAAAAAACATAAATGATTACAAAAAGGACCTTGAGATTATTGAAGAGGTGACTAGCAATGTTGATGAGGTCAAAAAAAGAGTTCTTGCTGACATCCTCTCACAAAATGCTCATGTTGAGTATTTGCAGGTAGATTAGGACGTTAAATAGGCGGATTGAGTTGAATTTGAACAGATTAAAATACGTTAAGTTAATAATAGGCTAACTCCTTTCATACTAGTAGTCATAGTATTGTTCATGTCATTTCGTGTTATTCGCGGATTGAGTTGAATTTAAACAGATTAAAATAAGTTAAGTTGATAAATGAGCGGCATCAGCAATCAGGCTAAAAACTTTTATATTAGTAGCTGTAGTGTTACTCATGTCGTTTCTTCTATTACTAGTTAATGTTTCTTGTAGTAATTGATTATCGTATTATTTTTGTTGTAGTTACTGTTCAATTTTTTTTCTTTTTATATGCTCTGTCATGATTTCTTTAGTATTTAATCTTGGCATCTTTGTTCCTATTATTTTTATTTTTTGATTCTCTTGGTAATGCTTTTACTTGAACTGGCAAGGTTCGTTTTTTTGGTGTTCGAGTCAGTTTATATAGTCATTATTTTTATTGTTTTTTATTCTGTTCTTTTGTATATTGCGCCTCAATTCAACTTCCTATGCCAGGAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</genome_strand>
        <mrna_strand>GGCAC-CA-GGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724878" ref_strand="+" ref_description="SGN-E724878 [FC25BF12]">
      <seq>aatcggccgaattgacagaaatttatctttttaattttctctctctagcttttcaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggtgctccaccgccgtcttcagcttcaccttacggtgctccaccaccgtcttcagcatcaccctacggtgcttcaccatcaccttacggtgctccaccatcaccctacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggggcaggggctgggtaccctgctccacctccttcggctccgtacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcaaaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25017" stop="27700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25310" g_stop="26043" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="734" r_length="734" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27400" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="735" r_stop="768" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E724878" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25310" e_stop="26043"/>
          <exon e_start="27367" e_stop="27400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTTCTAATTTACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAAAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724243" ref_strand="+" ref_description="SGN-E724243 [FC23CA10]">
      <seq>gaatttacagaaattcatctttttaattttctctctctagcttttcaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggtgctccaccgccgtcttcagcttcaccttacggtgctccaccaccgtcttcagcatcaccctacggtgcttcaccatcaccttacggtgctccaccatcaccctacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggggcaggggctgggtaccctgctccacctccttcggctccgtacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25019" stop="27900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25318" g_stop="26043" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="773" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27600" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="845" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E724243" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25318" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTT</genome_strand>
        <mrna_strand>GAATTTACAGAAATTCATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745870" ref_strand="+" ref_description="SGN-E745870 [GI|47105532]">
      <seq>gacagaaatttatcttttaattttctctctctagcttttcaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggtgctccaccgccgtcttcagcttcaccttacggtgctccaccaccgtcttcagcatcaccctacggtgcttcaccatcaccttacggtgctccaccatcaccctacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggggcaggggctgggtaccctgctccacctccttcggctccgtacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcaggaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25024" stop="29618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25323" g_stop="26043" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="767" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="943" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="944" r_stop="962" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28236" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1270" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1274" polyA_stop="1324"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E745870" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1271</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25323" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTC</genome_strand>
        <mrna_strand>GACAGAAATTTATC-TTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGGAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E397487" ref_strand="+" ref_description="SGN-E397487 [TUS-45-H4](-)">
      <seq>tgcagctccttatcatcaattaacccactcccatcctgatccgcgagctggaaacaaggtacaatattcggatcggtacccggtggaaaagcagacggcacaagagatgcaaaagggctactagctccataaggcccagcaggaggtggcgcgtggtatccaccataaggagcagacggttgtgagtggctatccttcggtggtttgtttggatcaccgtacggagccgaaggaggtggagcagggtacccagcccctgcccccccgtaaggggatgaagactgtggtttatttttttttgggggtttatgcggatcaccgtaagacggtgctccggcgccgtagggagacggaacgggagggtaaggggagtgagattgaggaggtggagcaccgtagggtgatggtggagcaccgtaaggtgatggtgaagcaccgtagggtgatgctgaagacggtggtggagcaccgtaaggtgaagctgaagacggcggtggagccccgtatggggtggaggagtacgggtgagatgacggtggctggccgtaaccgtagccgggaacattgtgggggtaaccggacatttttgaaaagctagagagagaaaattaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="26251" stop="25031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25951" g_stop="25332" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="644"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E397487" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25951" e_stop="25332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTCCTTATCATCAATTAACCCACTCCCATCCTGATCCGCGAGCTGGAAACAAGCTACAATATTCGGATCGGTACCCGGTGGAAAAGCAGACGGCACAAGAGATGCAAAAGGGCTACTAGCTCCATAAGGCCCAGCAGGAGGTGGCGCGTGGTATCCACCATAAGGAGCAGACGGTTGTGAGTGGCTATCCTTCGGTGGTTTGTTCGGATCACCGTACGGAGCCGAAGGAGGTGGAGCAGGGTACCCAGCCCCTGCCCCACCGTAAGGGGATGAAGACTGTGGTTTATTCTCTTTTGGGGGTTTATGCGGATCACCGTAAGACGGTGCTCCGGCGCCGTAGGGAGACGGAACGGGAGCGTAAGGGGAGTGAGATTGAGGAGGTGGAGCACCGTAGGGTGATGGTGGAGCACCGTAAGGTGATGGTGAAGCACCGTAGGGTGATGCTGAAGACGGTGGTGGAGCACCGTAAGGTGAAGCTGAAGACGGCGGTGGAGCACCGTATGGGGTGGAGGAGTACGGCTGAGATGACGGTGGCTGGCCGTAACCGTAGCCGGGAACATTGTGCGGGTAACCGGACATTTTTGAAAAGCTAGAGAGAGAAAATTAAAAAGATAA</genome_strand>
        <mrna_strand>TGCAGCTCCTTATCATCAATTAACCCACTCCCATCCTGATCCGCGAGCTGGAAACAAGGTACAATATTCGGATCGGTACCCGGTGGAAAAGCAGACGGCACAAGAGATGCAAAAGGGCTACTAGCTCCATAAGGCCCAGCAGGAGGTGGCGCGTGGTATCCACCATAAGGAGCAGACGGTTGTGAGTGGCTATCCTTCGGTGGTTTGTTTGGATCACCGTACGGAGCCGAAGGAGGTGGAGCAGGGTACCCAGCCCCTGCCCCCCCGTAAGGGGATGAAGACTGTGGTTTATTTTTTTTTGGGGGTTTATGCGGATCACCGTAAGACGGTGCTCCGGCGCCGTAGGGAGACGGAACGGGAGGGTAAGGGGAGTGAGATTGAGGAGGTGGAGCACCGTAGGGTGATGGTGGAGCACCGTAAGGTGATGGTGAAGCACCGTAGGGTGATGCTGAAGACGGTGGTGGAGCACCGTAAGGTGAAGCTGAAGACGGCGGTGGAGCCCCGTATGGGGTGGAGGAGTACGGGTGAGATGACGGTGGCTGGCCGTAACCGTAGCCGGGAACATTGTGGGGGTAACCGGACATTTTTGAAAAGCTAGAGAGAGAAAATTAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395366" ref_strand="+" ref_description="SGN-E395366 [TUS-16-H13](-)">
      <seq>ggaaaaagcagacggcacaagagatgcaaaagggctactagctccataaggcccagcaggaggtggcgcgtggtatccaccataaggagcagacggttgtgagtgggtatccttcggtggtttgttcggatccccgtacggagccgaaggaggtggagcagggtacccagcccctgcccccccgtaaggggatgaagactgtggtttatttttttttgggggtttatgcggatcaccgtaagacggtgctccggcgccgtagggagacggaacgggagcgtaaggggagtgagattgaggaggtggagcaccgtagggtgatggtggagccccgtaaggtgatggtgaagcaccgtagggtgatgctgaagacggtggtggagccccgtaaggtgaagctgaagacggcggtggagccccgtatggggtggaggagtacgggtgagatgacggtggctggccgtaaccgtagccgggaacattgtgcgggtaaccggacaaatttgaaaagctagagagagaaaattaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="26167" stop="25031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25868" g_stop="25332" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="561"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E395366" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25868" e_stop="25332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAAGCAGACGGCACAAGAGATGCAAAAGGGCTACTAGCTCCATAAGGCCCAGCAGGAGGTGGCGCGTGGTATCCACCATAAGGAGCAGACGGTTGTGAGTGGCTATCCTTCGGTGGTTTGTTCGGATCACCGTACGGAGCCGAAGGAGGTGGAGCAGGGTACCCAGCCCCTGCCCCACCGTAAGGGGATGAAGACTGTGGTTTATTCTCTTTTGGGGGTTTATGCGGATCACCGTAAGACGGTGCTCCGGCGCCGTAGGGAGACGGAACGGGAGCGTAAGGGGAGTGAGATTGAGGAGGTGGAGCACCGTAGGGTGATGGTGGAGCACCGTAAGGTGATGGTGAAGCACCGTAGGGTGATGCTGAAGACGGTGGTGGAGCACCGTAAGGTGAAGCTGAAGACGGCGGTGGAGCACCGTATGGGGTGGAGGAGTACGGCTGAGATGACGGTGGCTGGCCGTAACCGTAGCCGGGAACATTGTGCGGGTAACCGGACATTTTTGAAAAGCTAGAGAGAGAAAATTAAAAAGATAA</genome_strand>
        <mrna_strand>GGAAAAAGCAGACGGCACAAGAGATGCAAAAGGGCTACTAGCTCCATAAGGCCCAGCAGGAGGTGGCGCGTGGTATCCACCATAAGGAGCAGACGGTTGTGAGTGGGTATCCTTCGGTGGTTTGTTCGGATCCCCGTACGGAGCCGAAGGAGGTGGAGCAGGGTACCCAGCCCCTGCCCCCCCGTAAGGGGATGAAGACTGTGGTTTATTTTTTTTTGGGGGTTTATGCGGATCACCGTAAGACGGTGCTCCGGCGCCGTAGGGAGACGGAACGGGAGCGTAAGGGGAGTGAGATTGAGGAGGTGGAGCACCGTAGGGTGATGGTGGAGCCCCGTAAGGTGATGGTGAAGCACCGTAGGGTGATGCTGAAGACGGTGGTGGAGCCCCGTAAGGTGAAGCTGAAGACGGCGGTGGAGCCCCGTATGGGGTGGAGGAGTACGGGTGAGATGACGGTGGCTGGCCGTAACCGTAGCCGGGAACATTGTGCGGGTAACCGGACAAATTTGAAAAGCTAGAGAGAGAAAATTAAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579382" ref_strand="+" ref_description="SGN-E579382 [87365]">
      <seq>ctttttcattttctctctctacttttccaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggcgctccaccgccgtcttcagcctcaccatacggtgctccaccaccgtcttcatcatcaccctacggtgcttcaccatcaccttacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgccttacggtgatccgcataaacccccaaaagagaataaactacagtcttcatcgccttacggtggggcaggagcagggtaccctgccccacctccttcggctccttacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctctcgtgccctctgcttttccaccgggaaccgatccgaatgttatagcatgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25036" stop="26345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25336" g_stop="26043" g_length="708"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="687" r_length="687" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E579382" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25336" e_stop="26043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG</genome_strand>
        <mrna_strand>CTTTTTCATTTTCTCTCTCTACTTTTCCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGCGCTCCACCGCCGTCTTCAGCCTCACCATACGGTGCTCCACCACCGTCTTCATCATCACCCTACGGTGC-T-----TCACC--A------T-CACC-T-----TACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGCCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACTACAGTCTTCATCGCCTTACGGTGGGGCAGGAGCAGGGTACCCTGCCCCACCTCCTTCGGCTCCTTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTCGTGCCCTCTGCTTTTCCACCGGGAACCGATCCGAATGTTATAGCATGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572619" ref_strand="+" ref_description="SGN-E572619 [31801]">
      <seq>attttctctctctacttttccaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggcgctccaccgccgtcttcagcctcaccatacggtgctccaccaccgtcttcatcatcaccctacggtgcttcaccatcaccttacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgccttacggtgatccgcataaacccccaaaagagaataaactacagtcttcatcgccttacggtggggcaggagcagggtaccctgcacccacctccttcggctccttacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttgttgcatctctcgtgccctctgcttttccaccgggaaccgatccgaatgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25043" stop="26191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25343" g_stop="25891" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E572619" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25343" e_stop="25891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGC-TCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTT-TTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGT</genome_strand>
        <mrna_strand>ATTTTCTCTCTCTACTTTTCCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGCGCTCCACCGCCGTCTTCAGCCTCACCATACGGTGCTCCACCACCGTCTTCATCATCACCCTACGGTGC-T-----TCACC--A------T-CACC-T-----TACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGCCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACTACAGTCTTCATCGCCTTACGGTGGGGCAGGAGCAGGGTACCCTGCACCCACCTCCTTCGGCTCCTTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTGTTGCATCTCTCGTGCCCTCTGCTTTTCCACCGGGAACCGATCCGAATGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443050" ref_strand="+" ref_description="SGN-E443050 [cSTA-36-C21]">
      <seq>ccggctacggttacggccagccaccgtcatctcagccgtattcctccaccccatacggcgccccaccaccgtcttcagcctcaccatacggtgctccacctccgtcttcatcatcaccctacggtgcttcaccatcaccttacggtgctccaccaccgcattcatcatcaccctacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctacctacggcgccggagcaccgccttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatcgccttacggtggggcaggagcagggtaccctgccccacctccttcggctccttacggtgatccgaacaaaccaccgaaggatagccactcacaaccttctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctctcgtgccctctgcttttccaccgggaaccgatccgaatgttatagcatgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25093" stop="26249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25393" g_stop="25949" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E443050" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25393" e_stop="25949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCT---CCA---C---CA---TCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTG</genome_strand>
        <mrna_strand>CCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTATTCCTCCACCCCATACGGCGCCCCACCACCGTCTTCAGCCTCACCATACGGTGCTCCACCTCCGTCTTCATCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCACCGCATTCATCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTACCTACGGCGCCGGAGCACCGCCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCGCCTTACGGTGGGGCAGGAGCAGGGTACCCTGCCCCACCTCCTTCGGCTCCTTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCTTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTCGTGCCCTCTGCTTTTCCACCGGGAACCGATCCGAATGTTATAGCATGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561056" ref_strand="+" ref_description="SGN-E561056 [20807]">
      <seq>ccgtactcctccaccccatacagcgctccaccgccgtcttcagcctcaccatacggtgctccaccaccgtcttcatcatcaccctacggtgcttcaccatcaccttacggtgctccaccaccgattcatcatcaccctacggtgctcacctcctcaatctcactccccttacgctcccgctccgtctccttacggcgccggagcaccgccttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatcgccttacggtggggcaggagcagggtaccctgccccacctccttcggctccttacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctctcgtgccctctgcttttccaccgggaaccgatccgaatgttatagcatgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25128" stop="26317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25428" g_stop="26017" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E561056" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25428" e_stop="26017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCA--------TC---ACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTT</genome_strand>
        <mrna_strand>CCGTACTCCTCCACCCCATACAGCGCTCCACCGCCGTCTTCAGCCTCACCATACGGTGCTCCACCACCGTCTTCATCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCACCGATTCATCATCACCCTACGGTGCT-CACCTCCTCAATCTCACTCCCCTTACGCTCCCGCTCCGTCTCCTTACGGCGCCGGAGCACCGCCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCGCCTTACGGTGGGGCAGGAGCAGGGTACCCTGCCCCACCTCCTTCGGCTCCTTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTCGTGCCCTCTGCTTTTCCACCGGGAACCGATCCGAATGTTATAGCATGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727479" ref_strand="+" ref_description="SGN-E727479 [LA14DC06]">
      <seq>cggtccagccaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggggcaggggctgggtaccctgctccacctccttcggctccgtacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgaaaacaatttccagggtgaagttgaattacttgcttgtagaaatctagtgttgttgtaaagcagttaatgggctatcaaaactaaatcttttgtgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25319" stop="28535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25610" g_stop="26043" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="479" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="655" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="674" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28231" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="978" r_length="304" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="983" polyA_stop="997"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E727479" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>979</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25610" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTG-TGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGT</genome_strand>
        <mrna_strand>CGGT-CCAG-CCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGAAAACAATTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAATCTAGTGTTGTTGTAAAGCAGTTAATGGGCTATCAAAACTAAATCTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E359362" ref_strand="+" ref_description="SGN-E359362 [cLHT-31-J16]">
      <seq>ggagcaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggagcaggggctgggtaccctgccccacctccttcggctccttatggtgatccgaacaaaccaccgaaggatagtcactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctctcgtgccgtctgcttttccaccgggaaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25317" stop="26318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25617" g_stop="26018" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E359362" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25617" e_stop="26018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTC</genome_strand>
        <mrna_strand>GGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGAGCAGGGGCTGGGTACCCTGCCCCACCTCCTTCGGCTCCTTATGGTGATCCGAACAAACCACCGAAGGATAGTCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTCGTGCCGTCTGCTTTTCCACCGGGAACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253426" ref_strand="+" ref_description="SGN-E253426 [cLEG-24-J23]">
      <seq>ccctgctccacctccttaagctccttttggagatccgaacaaaccacccaacgatagccactcacaaccgactgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttaggtatctcttcaccaataccaacactagaaaaatgggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaaggttcgagagatttgatagggataggagtggaaaaatagattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25406" stop="27947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25706" g_stop="26043" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="385" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27647" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="504" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E253426" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25706" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTC</genome_strand>
        <mrna_strand>CCCTGCTCCACCTCCTTAAGCTCCTTTTGGAGATCCGAACAAACCACCCAACGATAGCCACTCACAACCGACTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTAGGTATCTCTTCACCAATACCAACACTAGAAAAATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAAGGTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATAGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E212663" ref_strand="+" ref_description="SGN-E212663 [cLEC-73-M7]">
      <seq>tgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25436" stop="28389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25736" g_stop="26043" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="355" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="531" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="550" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28089" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="711" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E212663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25736" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTT</genome_strand>
        <mrna_strand>TGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349520" ref_strand="+" ref_description="SGN-E349520 [cTOS-1-C10]">
      <seq>tcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25681" stop="28535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25981" g_stop="26043" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="110" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="286" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="305" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28231" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="608" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="622"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E349520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25981" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGT</genome_strand>
        <mrna_strand>TCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353334" ref_strand="+" ref_description="SGN-E353334 [cTOS-15-M21]">
      <seq>tcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaagcatatgaatttcaccattacgggtggtcttactatgatttaccagcttcgttttcgtttggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25681" stop="28405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25981" g_stop="26043" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="110" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="286" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="305" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28105" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="482" r_length="177" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E353334" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25981" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTT</genome_strand>
        <mrna_strand>TCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAAGCATATGAATTTCACCATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E435314" ref_strand="+" ref_description="SGN-E435314 [STM-61-I2]">
      <seq>ctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttttacagtcttcaagaatggaggggaattttcgagagatttgacagggataggagtggaaaaattgattcatctgaattgagggacgcactacttagcctgggatatgctgtatcaccttctatcctggatttgctggtctccaagtttgacaaaactggtggaaagaatagagccattgaatatgataacttcatcgagtgctgcctcactgttaaagggcttactgagaaattcaaggagaaggatacttcatattccggctctgctacgttcacttatgagtccttcatgctaacagttttgcctttcctgatcgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgacttaccagcttcgttttcgtttgttttcaggagagatgtctgcttctgttagtttttgtaaacagttttcagggtgaagttgaatgacttgtaaaagtctantgtgttttacatcagttaatgggatattatcaaaactaaattctttgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25701" stop="28471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26001" g_stop="26043" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="90" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="266" r_length="176" r_score="0.960"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="285" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28234" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="588" r_length="303" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E435314" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26001" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGG---CTATCAAAACTAAATCCTTTGTGTT</genome_strand>
        <mrna_strand>CTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTTTACAGTCTTCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGACAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCACTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGATTTGCTGGTCTCCAAGTTTGACAAAACTGGTGGAAAGAATAGAGCCATTGAATATGATAACTTCATCGA..........................................................................................................GTGCTGCCTCACTGTTAAA...................................................................................................GGGCTTACTGAGAAATTCAAGGAGAAGGATACTTCATATTCCGGCTCTGCTACGTTCACTTATGAGTCCTTCATGCTAACAGTTTTGCCTTTCCTGATCGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGACTTACCAGCTTCGTTTTCGTTTGTTTTCAG--GAGAGATGTCTGCTTCTGTTAGTTTTTGTAAACAGTTTTCAGGGTGAAGTTGAATGA----CTTGTAAAAGTCTANTGTGTTTTACATCAGTTAATGGGATATTATCAAAACTAAATTCTTTGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395367" ref_strand="-" ref_description="SGN-E395367 [TUS-16-H13]">
      <seq>ctagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttcttttgatgtgtttactattcgatcatgactactttaaagagtatttggttcggcttattttagaaaataaaatataaacaaatctatttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27061" stop="28630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="59" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="235" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="254" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27929" g_stop="28330" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="656" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E395367" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395367" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</genome_strand>
        <mrna_strand>GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716980" ref_strand="+" ref_description="SGN-E716980 [FB18CD05]">
      <seq>cttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtataagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27082" stop="28534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27382" g_stop="27413" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="208" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="227" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27929" g_stop="28231" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="530" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="534" polyA_stop="548"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E716980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27382" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGT</genome_strand>
        <mrna_strand>CTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTATAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E398737" ref_strand="-" ref_description="SGN-E398737 [TUS-45-H4]">
      <seq>aagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctattcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttcttttgatgtgtttactattcgatcatgactactttaaagagtatttggttcggcttattttagaaaataaaatataaacaaatctatttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27222" stop="28630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27403" g_stop="27413" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="188" r_length="177" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="207" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27929" g_stop="28330" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="609" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E398737" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398737" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27403" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTA-TCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</genome_strand>
        <mrna_strand>AAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATTCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205988" ref_strand="-" ref_description="SGN-E205988 [cLEC-20-K24]">
      <seq>tttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttcttttcatgtgtttactattcgatcatgagtactttaaagagtatttggttcggcttattttagaatataaaatataatcaaatctatttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27234" stop="28629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27534" g_stop="27704" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="190" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27929" g_stop="28329" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="591" r_length="401" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E205988" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205988" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27534" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28329"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAG</genome_strand>
        <mrna_strand>TTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTCATGTGTTTACTATTCGATCATGAGTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAATATAAAATATAATCAAATCTATTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438345" ref_strand="-" ref_description="SGN-E438345 [cSTA-7-D11]">
      <seq>ggagtggaaaaattgattcaactgaattgaggcacgcactacttagcctgggatatgctgtatcaccttctatcctggatttgctggtttccaagtttgacaaaactggtggaaagaatagagccattgaatatgataacttcatcgagtgctgcctcactgtaaaagggctaactgagaaattcaaagagaaggatactgcatattccggctatgcaacgttcacttatgagtccttcatgctgacagttttgcctttcctgatcgcttagagacgaggcatatgaatttcattattacgggtggtctgtctatgacttaccagcttcgatttcatttgttttcagtagagggatgtttgcttatgtaagttattgtaaacagttttcagggtgaagttgaatgacttgtagaagtctagtgtgttttacatcagttaatgggatattatcaaaactaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27257" stop="28515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27557" g_stop="27704" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="167" r_length="19" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27929" g_stop="28208" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="443" r_length="276" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="479"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E438345" ref_strand="-">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438345" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27557" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGG</genome_strand>
        <mrna_strand>GGAGTGGAAAAATTGATTCAACTGAATTGAGGCACGCACTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGATTTGCTGGTTTCCAAGTTTGACAAAACTGGTGGAAAGAATAGAGCCATTGAATATGATAACTTCATCGA..........................................................................................................GTGCTGCCTCACTGTAAAA...................................................................................................GGGCTAACTGAGAAATTCAAAGAGAAGGATACTGCATATTCCGGCTATGCAACGTTCACTTATGAGTCCTTCATGCTGACAGTTTTGCCTTTCCTGATCGCTTAGAGACGAGGCATATGAATTTCATTATTACGGGTGGTCTGTCTATGACTTACCAGCTTCGATTTCATTTGTTTTCAGTAGAGGGATGTTTGCTTATGTAAGTTATTGTAAACAGTTTTCAGGGTGAAGTTGAATGA----CTTGTAGAAGTCTAGTGTGTTTTACATCAGTTAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E611397" ref_strand="-" ref_description="SGN-E611397 [61148]">
      <seq>ctcactgttaaagggctaactgagaaattcaaagagaaggatactgcatattccggctctgctacgttcacttatgagtccttcatgctgacagttttgcctttcctgatcgcttagagacgaggcatatgaatttcattattacgggtggtctgtctatgacttaccagcttcgatttcatttgttttcagtagagggatgtttgcttctgttagtttttgtaaacagttttcagggtgaagttgaatgacttgtagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="27622" stop="28480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27818" g_stop="27829" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27929" g_stop="28170" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="254" r_length="242" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="257" polyA_stop="274"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E611397" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E611397" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27818" e_stop="27829"/>
          <exon e_start="27929" e_stop="28170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTT</genome_strand>
        <mrna_strand>CTCACTGTTAAA...................................................................................................GGGCTAACTGAGAAATTCAAAGAGAAGGATACTGCATATTCCGGCTCTGCTACGTTCACTTATGAGTCCTTCATGCTGACAGTTTTGCCTTTCCTGATCGCTTAGAGACGAGGCATATGAATTTCATTATTACGGGTGGTCTGTCTATGACTTACCAGCTTCGATTTCATTTGTTTTCAGTAGAGGGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTTCAGGGTGAAGTTGAATGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417530" ref_strand="+" ref_description="SGN-E417530 [STM-25-J5]">
      <seq>attatttattccttacaggaaaaacgaaaccctaaaaatctttcttctaccgatctgcttctcctcttttcagtttatctggttctgcaaggcggcgagttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29081" stop="31221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29381" g_stop="29729" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30921" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="485" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E417530" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29381" e_stop="29729"/>
          <exon e_start="30782" e_stop="30921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTC</genome_strand>
        <mrna_strand>ATTATTTATTCCTTACAG--GAAAA-ACGAAACCCTAAAAATCTTTCTTCTACCGATCTGCTTCTCCTCTTTTCAGTTTATCTGGTTCTGCAAGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446297" ref_strand="+" ref_description="SGN-E446297 [cSTA-20-L7]">
      <seq>attatttattccttacaggaaaaacgaaaccctaaaaatctttcttctaccgatctgcttctcctcttttcagtttatctggttctgcaaggcggcgagttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29081" stop="31214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29381" g_stop="29729" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30914" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="478" r_length="133" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E446297" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29381" e_stop="29729"/>
          <exon e_start="30782" e_stop="30914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCA</genome_strand>
        <mrna_strand>ATTATTTATTCCTTACAG--GAAAA-ACGAAACCCTAAAAATCTTTCTTCTACCGATCTGCTTCTCCTCTTTTCAGTTTATCTGGTTCTGCAAGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329000" ref_strand="+" ref_description="SGN-E329000 [cTOC-24-K13]">
      <seq>tatttattccttacagcaaaaaagacgaaaccctagaaatctttcttctaccgatccacttctcatcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29083" stop="31576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29383" g_stop="29729" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="502" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31276" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="671" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E329000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29383" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGC</genome_strand>
        <mrna_strand>TATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E709280" ref_strand="+" ref_description="SGN-E709280 [FA51BA04]">
      <seq>cccgttaaaccctagaaatctttcttctaccgatccacttctcctcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgcgatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcacagaggttctctactccgttgaatcaagttcagaataaaatatggctaatgcattggagtctattcatcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29110" stop="31837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29404" g_stop="29729" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="481" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="709" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31537" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="780" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E709280" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29404" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTT</genome_strand>
        <mrna_strand>CCCGTTAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCCTCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGCGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCACAG...................................................................................................................................AGGTTCTCTACTCCGTTGAATCAAGTTCAGAATAAAATATGGCTAATGCATTGGAGTCTATTCATCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336724" ref_strand="+" ref_description="SGN-E336724 [cTOE-5-M24]">
      <seq>agacgaaaccctagaaatctttcttctaccgatccacttctcatcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcaaaattccagtgctgtgcaggagttgagagctgacaaacagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29105" stop="31206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29405" g_stop="29729" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30906" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="450" r_length="125" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E336724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29405" e_stop="29729"/>
          <exon e_start="30782" e_stop="30906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCAC</genome_strand>
        <mrna_strand>AGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAAAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723252" ref_strand="+" ref_description="SGN-E723252 [FC19DG07]">
      <seq>tctttcttctaccgatccacttctcatcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcaaaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29122" stop="31637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29422" g_stop="29729" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="463" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="691" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31481" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="706" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E723252" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29422" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCG</genome_strand>
        <mrna_strand>TCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAAAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475943" ref_strand="+" ref_description="SGN-E475943 [cSTB-42-F18]">
      <seq>ccgatctgcttctcctcttttcagtttatctggttctgcaaggcggcgagttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29133" stop="31220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29433" g_stop="29729" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30920" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="435" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E475943" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29433" e_stop="29729"/>
          <exon e_start="30782" e_stop="30920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCT</genome_strand>
        <mrna_strand>CCGATCTGCTTCTCCTCTTTTCAGTTTATCTGGTTCTGCAAGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E460183" ref_strand="+" ref_description="SGN-E460183 [cPRO-30-O5]">
      <seq>ctcttttcagtttatctggttctgcaaagcggcgagttttctggttgctatctcttccgacagcagcaatcatggcgtcgaagtatgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcacgagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29148" stop="31511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29447" g_stop="29729" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="437" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31211" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="541" r_length="104" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E460183" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29447" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATT</genome_strand>
        <mrna_strand>CTCTTTTCAGTTTATCTGGTTCTGCAAAGCGGCGAGTTTTCTGGTTGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTATGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCACGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E315398" ref_strand="+" ref_description="SGN-E315398 [cTOA-22-M5]">
      <seq>tcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagcccaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29148" stop="31161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29448" g_stop="29729" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30861" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="362" r_length="80" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E315398" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29448" e_stop="29729"/>
          <exon e_start="30782" e_stop="30861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTG</genome_strand>
        <mrna_strand>TCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCCAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444050" ref_strand="+" ref_description="SGN-E444050 [cSTA-41-M23]">
      <seq>tttcagtttatctggttctgcaaagcggcgagttttctggttgctatctcttccgacagcagcaatcatggcgtcgaagtatgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29151" stop="31546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29451" g_stop="29729" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="433" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31246" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="572" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E444050" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29451" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT</genome_strand>
        <mrna_strand>TTTCAGTTTATCTGGTTCTGCAAAGCGGCGAGTTTTCTGGTTGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTATGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284947" ref_strand="+" ref_description="SGN-E284947 [cLER-19-P14]">
      <seq>tcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29153" stop="31546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29453" g_stop="29729" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="432" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31246" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="571" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E284947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29453" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT</genome_strand>
        <mrna_strand>TCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745354" ref_strand="+" ref_description="SGN-E745354 [GI|47105724]">
      <seq>ggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctgtttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcggtacttggctattgcatttattgtcaacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttatcttgtgttgtctccataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29164" stop="33711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29464" g_stop="29729" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="421" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="649" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="650" r_stop="771" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="991" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="992" r_stop="1134" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1135" r_stop="1272" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33141" g_stop="33409" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1273" r_stop="1541" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1542" polyA_stop="1561"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E745354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1541</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29464" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCC</genome_strand>
        <mrna_strand>GGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E481099" ref_strand="+" ref_description="SGN-E481099 [cSTD-16-B23]">
      <seq>cgatgggcggcgagttttctggtagctatctcttccgacgtagcaatcatggcgtcgaagtacgaacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaagagaagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccattgaatcaagttcaaaatagaaatatggctaatgcattggagtctattcatcttcttcaccatgacaatggcaggacacttgatcattgacctatttaaccaggacaaatacttgaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29174" stop="31891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29469" g_stop="29729" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="416" r_length="156" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="644" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="767" r_length="123" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E481099" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29469" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACG-ATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAG-AGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAG-AATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACAC-TGATCATTGACCTGTTTAACCAGGACAA</genome_strand>
        <mrna_strand>CGATGGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGAC-GTAGCAATCATGGCGTCGAAGTACGAACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAAGAGAAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCATTGAATCAAGTTCAAAATAGAAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTC-ACCATGACAATGGCAGGACACTTGATCATTGACCTATTTAACCAGGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438224" ref_strand="+" ref_description="SGN-E438224 [cSTA-6-L3]">
      <seq>gcaaagcggcgagttttctggttgctatctcttccgacagcagcaatcatggcgtcgaagtatgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29170" stop="31443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29470" g_stop="29729" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="414" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31143" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="450" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E438224" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29470" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATAT</genome_strand>
        <mrna_strand>GCAAAGCGGCGAGTTTTCTGGTTGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTATGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476292" ref_strand="+" ref_description="SGN-E476292 [cSTB-43-P10]">
      <seq>gcaaggcggcgagttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattgataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29170" stop="31213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29470" g_stop="29729" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30913" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="391" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E476292" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29470" e_stop="29729"/>
          <exon e_start="30782" e_stop="30913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTC</genome_strand>
        <mrna_strand>GCAAGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTGATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400144" ref_strand="+" ref_description="SGN-E400144 [cSTC-5-G1]">
      <seq>gcttagcggcgagttttctggttgctatctcttccgacagcagcaatcatggcgtcgaagtatgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaagaagctgcagccccattgatcactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29175" stop="31160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29470" g_stop="29729" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30860" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="338" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E400144" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29470" e_stop="29729"/>
          <exon e_start="30782" e_stop="30860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTT</genome_strand>
        <mrna_strand>GCTTAGCGGCGAGTTTTCTGGTTGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTATGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAAGAAGCTGCAGCCCCATTGATCACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480477" ref_strand="+" ref_description="SGN-E480477 [cSTD-14-E11]">
      <seq>gcaaggcggcgagttttctggtagctattctctttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtattagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcactttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29170" stop="31160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29470" g_stop="29729" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30860" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="341" r_length="79" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E480477" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29470" e_stop="29729"/>
          <exon e_start="30782" e_stop="30860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGGCGGCGAGTTTTGTGGTTGCTA-TCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGT-GTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTT</genome_strand>
        <mrna_strand>GCAAGGCGGCGAGTTTTCTGGTAGCTATTCTCTTTCCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442410" ref_strand="+" ref_description="SGN-E442410 [cSTA-33-I14]">
      <seq>aaagcggcgagttttctggtagctatgtcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcaacaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29175" stop="30036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29472" g_stop="29729" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E442410" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>258</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29472" e_stop="29729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG</genome_strand>
        <mrna_strand>AAAGCGGCGAGTTTTCTGGTAGCTATGTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAACAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473740" ref_strand="+" ref_description="SGN-E473740 [cSTB-33-H17]">
      <seq>aggcggcgagttttctggtagctatctcttccgacagtagcaatcatggcgtccaagtacgacttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcacgagcacggactatacccaaatgaatatatactcaaggcgaagattgagctgttcaatcacactaacatggttgattatgctatggatatgcataagtctgtctatcataccgacgatgtacctcaagaaatgatggagaggagagctgacgctgtggcaaggttgaaagcacttgaagaagctgcagccccattgatcactttttcgcagaattgcagtgctgtgcatgagttgagagctgacaaacagcacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29174" stop="31210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29473" g_stop="29729" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30910" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="385" r_length="129" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E473740" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29473" e_stop="29729"/>
          <exon e_start="30782" e_stop="30910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATC</genome_strand>
        <mrna_strand>AGGCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCCAAGTACGACTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCACGAGCACGGACTATACCCAAATGAATATATACTCAAGGCGAAGATTGAGCTGTTCAATCACACTAACATGGTTGATTATGCTATGGATATGCATAAGTCTGTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGACGCTGTGGCAAGGTTGAAAGCACTTGAAGAAGCTGCAGCCCCATTGATCACTTTTTCGCAGAATTGCAGTGCTGTGCATGAGTTGAGAGCTGACAAACAGCACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E444117" ref_strand="+" ref_description="SGN-E444117 [cSTA-41-O4]">
      <seq>gcggcgagttttctggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagcttcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29175" stop="31595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29475" g_stop="29729" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="409" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31295" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="597" r_length="188" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E444117" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29475" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</genome_strand>
        <mrna_strand>GCGGCGAGTTTTCTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTTCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E585418" ref_strand="+" ref_description="SGN-E585418 [67878]">
      <seq>cgagttttctggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggatattgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29179" stop="31595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29479" g_stop="29729" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="405" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31295" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="593" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E585418" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E585418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29479" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</genome_strand>
        <mrna_strand>CGAGTTTTCTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E441196" ref_strand="+" ref_description="SGN-E441196 [cSTA-29-F9]">
      <seq>cgagttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaagaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattgcagtttgaatgtggaaactactctggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29179" stop="31482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29479" g_stop="29729" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="405" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31182" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E441196" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E441196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29479" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCT</genome_strand>
        <mrna_strand>CGAGTTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAAGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTGCAGTTTGAATGTGGAAACTACTCTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589824" ref_strand="+" ref_description="SGN-E589824 [43406]">
      <seq>gttttctggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtcctatttcaatcttcttcaaccatgacaatggcaggacactgatcatggaccttatttaaccaggacaaatactttgaatgccattcaaacaagtgctccccaacttggctgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29182" stop="32388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29729" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="402" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="630" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="756" r_length="126" r_score="0.918"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.819" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32047" g_stop="32088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="801" r_length="45" r_score="0.857"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E589824" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32088"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGT-CTA-TTC-ATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACC-TGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATAC-TTGAATGCCATTCAAACAAGTGCTCCCC-ACTT-GCTGCG</genome_strand>
        <mrna_strand>GTTTTCTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCCTATTTCAATCTTCTTCAACCATGACAATGGCAGGACACTGATCATGGACCTTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTGAATGCCATTCAAACAAGTGCTCCCCAACTTGGCTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487720" ref_strand="+" ref_description="SGN-E487720 [cSTE-26-K18]">
      <seq>gttttttggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagcttcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcattttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacnaatacttgaatgccattcaacaagtgctccccacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29182" stop="32386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29729" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="402" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="630" r_length="228" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="752" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32047" g_stop="32086" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="791" r_length="39" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E487720" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTG</genome_strand>
        <mrna_strand>GTTTTTTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTTCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATTTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACNA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTC-AACAAGTGCTCCCCACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452539" ref_strand="+" ref_description="SGN-E452539 [cSTS-17-M1]">
      <seq>gttttctggttgctatctcttccgacagcagcaatcatggcgtcgaagtatgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgcttcaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtgggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaatatcgactcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29182" stop="31633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29729" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="402" r_length="155" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31333" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="626" r_length="224" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E452539" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAA</genome_strand>
        <mrna_strand>GTTTTCTGGTTGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTATGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT-GGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAA-TATCGACTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568329" ref_strand="+" ref_description="SGN-E568329 [12594]">
      <seq>gttttctggtagctatctcttccgacagcagcaatcatggcgtcgaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaaatgtggaaactactctggtgctgcgcgattatctttacccagtaccgagcattggtgcaccaaacagtgaccagggagccgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29182" stop="31536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29482" g_stop="29729" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="402" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31240" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="539" r_length="137" r_score="0.850"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E568329" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29482" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTG-AATGTGGAAACTATTCTGGTGCTGC-TGATTATCTTTA-CCAGTACCGAGCATT-GTGCA-CAAACAGTGACAGGAGCGTCAGTG</genome_strand>
        <mrna_strand>GTTTTCTGGTAGCTATCTCTT-CCGACAGCAGCAATCATGGCGTCGAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAAATGTGGAAACTACTCTGGTGCTGCGCGATTATCTTTACCCAGTACCGAGCATTGGTGCACCAAACAGTGACCAGGGAG-CCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E439235" ref_strand="+" ref_description="SGN-E439235 [cSTA-11-M6]">
      <seq>ttttctggtagctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29183" stop="31595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29483" g_stop="29729" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="401" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31295" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="589" r_length="188" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E439235" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E439235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29483" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</genome_strand>
        <mrna_strand>TTTTCTGGTAGCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314861" ref_strand="+" ref_description="SGN-E314861 [cTOA-31-A7]">
      <seq>ttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaagggtgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29183" stop="31223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29483" g_stop="29729" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30923" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="389" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E314861" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29483" e_stop="29729"/>
          <exon e_start="30782" e_stop="30923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCA</genome_strand>
        <mrna_strand>TTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGGTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477753" ref_strand="+" ref_description="SGN-E477753 [cSTD-1-L19]">
      <seq>tctggcaacgtatctcttgcgacagtagcaatcatggcgtcaaagtacgacttgacgccacgtatagcgcaggaattggacattcacttgatcttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatgataccgacgatgtacctcaagaaatgatggagaggagagctgacgttgcggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggagaaagcttgcaacggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactgcattgaatcaagttcaaaatagaatatggctaatgcattggagtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29195" stop="31825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29486" g_stop="29729" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="399" r_length="155" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="627" r_length="228" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31525" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="686" r_length="59" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E477753" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29486" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGTTGC-TATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCT</genome_strand>
        <mrna_strand>TCTGGCAACGTATCTCTT-GCGACAGTAGCAATCATGGCGTCAAAGTACGACTTGACGCCACGTATAGCGCAGGAATTGGACATTCACTTGATCTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATGATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGACGTTGCGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGAGAAAGCTTGCAACGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTGCATTGAATCAAGTTCAAAATAGAATATGGCTAATGCATTGGAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334084" ref_strand="+" ref_description="SGN-E334084 [cTOD-24-P15]">
      <seq>tgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29192" stop="31205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29492" g_stop="29729" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30905" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="362" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E334084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29492" e_stop="29729"/>
          <exon e_start="30782" e_stop="30905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCA</genome_strand>
        <mrna_strand>TGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E454881" ref_strand="+" ref_description="SGN-E454881 [cSTS-24-L21]">
      <seq>gctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29193" stop="31615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29493" g_stop="29729" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="391" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31315" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="599" r_length="208" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E454881" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29493" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31315"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGA</genome_strand>
        <mrna_strand>GCTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E590945" ref_strand="+" ref_description="SGN-E590945 [44551]">
      <seq>ctatctcttccgacagtagcaatcatggcgtcgaagtacgacttgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccattgaatcaagttcaaaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29194" stop="31885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29494" g_stop="29729" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="390" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="618" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31585" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="737" r_length="119" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E590945" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E590945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29494" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGA</genome_strand>
        <mrna_strand>CTATCTCTT-CCGACAGTAGCAATCATGGCGTCGAAGTACGACTTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCATTGAATCAAGTTCAAAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446529" ref_strand="+" ref_description="SGN-E446529 [cSTA-21-B16]">
      <seq>ctcttccgacagcagcaatcatggcgtctaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggactatacccagatgaatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29198" stop="31482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29498" g_stop="29729" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="384" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31182" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E446529" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29498" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCT</genome_strand>
        <mrna_strand>CTCTT-CCGACAGCAGCAATCATGGCGTCTAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGACTATACCCAGATG-A-ATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699105" ref_strand="+" ref_description="SGN-E699105 [FA08CG05]">
      <seq>cttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttngatgcaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29200" stop="33459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29500" g_stop="29729" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="385" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="613" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31515" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="662" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31516" i_stop="32646" i_length="1131">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32647" g_stop="32727" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="743" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="881" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33141" g_stop="33159" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="882" r_stop="900" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E699105" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>900</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29500" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31515"/>
          <exon e_start="32647" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTT-GATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGAT</genome_strand>
        <mrna_strand>CTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTNGATG-CAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453558" ref_strand="+" ref_description="SGN-E453558 [cSTS-20-K22]">
      <seq>gcgtcgaagtacgccttgaccgccacgtatagcgccagcaattggaccttcaccttgattttcccgttacctggagtttttgcaagagccagggaccttacccagatgaaatatattactcaaggcgaaagcttgagctgctcaatcaacctaacatggttgattatgctatggatattcataagtctctctatcatacccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29222" stop="31592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29522" g_stop="29729" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.851"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="372" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31292" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="557" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E453558" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29522" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTCGAAGTACGATTTGA-CGCCACGTGTAGCG-CAGCAATTGGACATTCA-CTTGATTTTCCCGTTA-CTGGAGTTTTTGCAAGAG-CAGGGATTATACCCAGATGA-ATATA-TACTCAAGGCG-AAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATA-CTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGC</genome_strand>
        <mrna_strand>GCGTCGAAGTACGCCTTGACCGCCACGTATAGCGCCAGCAATTGGACCTTCACCTTGATTTTCCCGTTACCTGGAGTTTTTGCAAGAGCCAGGGACCTTACCCAGATGAAATATATTACTCAAGGCGAAAGCTTGAGCTGCTCAATCAACCTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584062" ref_strand="+" ref_description="SGN-E584062 [9883]">
      <seq>ccaagtacgacctgacgcctacgtatagtcgcagcgaattggacattcacttgattttcccgttactggagtttttgcaatagcagggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtcgtctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttggagagctgacaaacaggcacaatcttcagtttgctccatgagcggtaccggattggtccggaccagatcagaggcattgtatcaatatgccaaattccattttgaatgtggaaactactctggtgctgcggattatctttaccagtgaccgagcattgtgcacaaacagtgaccggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29226" stop="31588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29526" g_stop="29729" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="366" r_length="158" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.88"/>
            <acceptor a_prob="0.979" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31288" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="549" r_length="183" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E584062" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29526" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTACGATTTGACGCC-ACGTGTAG-CGCAGC-AATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTC-TCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTT-GAGAGCTGACAAACA-GCACAATCTTCAG-TTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGAT-AGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGT-ACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATA</genome_strand>
        <mrna_strand>CCAAGTACGACCTGACGCCTACGTATAGTCGCAGCGAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAATAGCAGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCGTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGGAGAGCTGACAAACAGGCACAATCTTCAGTTTGCTCCATGAGCGGTACCGG...........................................................................................................................................................................ATTGGTCCGGACCAGATCAGAGGCATTGTATCAATATGCCAAATTCCATTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTGACCGAGCATTGTGCACAAACAGTGACCGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559752" ref_strand="+" ref_description="SGN-E559752 [19297]">
      <seq>gaagtacgacctgacgccacgtatagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcaggggactatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatgggggaaagcttgcagcggagatactaatgcagaattgggatattggactcgagaactcaaccgcttgaagcgaaattatcgactcaaagagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29227" stop="31637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29527" g_stop="29729" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="359" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="588" r_length="229" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E559752" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29527" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCA-GGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGT-GGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAA-AGAAATTATCGACTCAAAG</genome_strand>
        <mrna_strand>GAAGTACGACCTGACGCCACGTATAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGGACTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGGACTCGA-GAACTCAACCGCTTGAAGCGAAATTATCGACTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710636" ref_strand="+" ref_description="SGN-E710636 [FA56AB05]">
      <seq>tgacgccacgtgtagcgcagcaattggacattcccttgattttcccgctactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggcaccagattggtccggaccacatagaggcattgcatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcacaattgggatattgcactcgaggaactcaaccgcttgaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29238" stop="31621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29538" g_stop="29729" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="347" r_length="155" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31321" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="561" r_length="214" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E710636" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29538" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31321"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAA</genome_strand>
        <mrna_strand>TGACGCCACGTGTAGCGCAGCAATTGGACATTCCCTTGATTTTCCCGCTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGCACCAG...........................................................................................................................................................................ATTGGTCCGGACCACATAGAGGCATTGCATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCACAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479392" ref_strand="+" ref_description="SGN-E479392 [cSTD-9-P19]">
      <seq>cgccacgtatagcgccgcaattggacattcaccttgattttcccgttacctgggagtttttgcaagagcagggaccataccccagatgaatatatacctcaaggcgaagcttgagcctgctcaatcaccacctaacatggttgaattatgctatggatattcataagtctctctatcataccgacgatgtacctcaagaaatgatggagaggagaagcctgagggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccattgaatcaagttcaaaatagaatatggctaatgcatttggagtctattcatcttcttcaaccatgacaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29241" stop="31853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29541" g_stop="29729" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.862"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="356" r_length="158" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="584" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31553" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="672" r_length="88" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E479392" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29541" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCACGTGTAGCGCAGCAATTGGACATTCA-CTTGATTTTCCCGTTA-CT-GGAGTTTTTGCAAGAGCAGGGATTATA-CCCAGATGAATATATAC-TCAAGGCGAAGATTGAG-CTGCTTAATCA-CA-CTAACATGGTTG-ATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAG-AGCC-GA-GGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCA-TTGGAGTCTATTCATCTTCTTCAACCATGACAATGGC</genome_strand>
        <mrna_strand>CGCCACGTATAGCGCCGCAATTGGACATTCACCTTGATTTTCCCGTTACCTGGGAGTTTTTGCAAGAGCAGGGACCATACCCCAGATGAATATATACCTCAAGGCGAAGCTTGAGCCTGCTCAATCACCACCTAACATGGTTGAATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACGATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAAGCCTGAGGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCATTGAATCAAGTTCAAAATAGAATATGGCTAATGCATTTGGAGTCTATTCATCTTCTTCAACCATGACAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479619" ref_strand="+" ref_description="SGN-E479619 [cSTD-10-N3]">
      <seq>ttcaccttgattttcccgttactggagtttttgccagagcagggaccatacccagaagataatatactcaaggcgaagattgagcctgctcaatcacactaacttggttgattatgctatggaatttcataagtctctctatcataccgacgatgtaccctcaagaaatgatggagatgagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcactttttttgcagaattccagtgctgtgcaggaagttgagaagctgacaaacagcacaatcttcagttgctccaggaagcggtaccagattggtccggaccagatagaggcgttgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagccgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccattgaatcaagttcaaaatagaatatggctaatgcatttggagtctattcatcttcttcaaccatgacaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29268" stop="31853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29568" g_stop="29729" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="324" r_length="159" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.92"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="553" r_length="229" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31553" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="641" r_length="88" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E479619" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29568" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCA-CTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAG-CTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGT-GCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCAC-TTTTTTGCAGAATTCCAGTGCTGTGCAGG-AGTTGAG-AGCTGACAAACAGCACAATCTTCAGTTGCTCCAGG-AGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAG-CGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCA-TTGGAGTCTATTCATCTTCTTCAACCATGACAATGGC</genome_strand>
        <mrna_strand>TTCACCTTGATTTTCCCGTTACTGGAGTTTTTGCCAGAGCAGGGACCATACCCAGAAGATAATATACTCAAGGCGAAGATTGAGCCTGCTCAATCACACTAACTTGGTTGATTATGCTATGGAATTTCATAAGTCTCTCTATCATACCGACGATGTACCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGATGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTTGCAGAATTCCAGTGCTGTGCAGGAAGTTGAGAAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCGTTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCATTGAATCAAGTTCAAAATAGAATATGGCTAATGCATTTGGAGTCTATTCATCTTCTTCAACCATGACAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E583755" ref_strand="+" ref_description="SGN-E583755 [9576]">
      <seq>tatacccagatgaatatatactcaaggcgaagattgagctgctcaatcacactaacatggttgattatgctatggatattcataagtctctctatcataccgacaatgtacctcaagaaatgatggaaaggagagctgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttggttgcagaattccagtgctgtgcaggagtcgagagctgacaaacagccacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcgttatggggaaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29313" stop="31557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29613" g_stop="29729" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="273" r_length="156" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31257" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="423" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E583755" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E583755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29613" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAG-CACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTT</genome_strand>
        <mrna_strand>TATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTCAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACCGACAATGTACCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAAAGGAGAGCTGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTGGTTGCAGAATTCCAGTGCTGTGCAGGAGTCGAGAGCTGACAAACAGCCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCGTTATGGGGAAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564977" ref_strand="+" ref_description="SGN-E564977 [3226]">
      <seq>tgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcatttgtgcacaaacagtgacaggagcgtcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30507" stop="31541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30807" g_stop="30936" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31108" g_stop="31241" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="265" r_length="135" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E564977" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30807" e_stop="30936"/>
          <exon e_start="31108" e_stop="31241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCA-TTGTGCACAAACAGTGACAGGAGCGTCAGTGC</genome_strand>
        <mrna_strand>TGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTTGTGCACAAACAGTGACAGGAGCGTCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576021" ref_strand="+" ref_description="SGN-E576021 [59172]">
      <seq>cttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggatattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30526" stop="31592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30826" g_stop="30936" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31108" g_stop="31292" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="296" r_length="185" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E576021" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30826" e_stop="30936"/>
          <exon e_start="31108" e_stop="31292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGC</genome_strand>
        <mrna_strand>CTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E564357" ref_strand="+" ref_description="SGN-E564357 [2606]">
      <seq>gacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgctcaactatgatttctgatgcgacgcacaggagcaacgatgaaggagtgcgaagagctaatattgaaatgacccattccttgggaaaaagagctgaaagagggcaggtttctcctctgtggctattgagagaatgaaatcttgaaaatgctcgccttttatctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30595" stop="32988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30895" g_stop="30936" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="270" r_length="228" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="392" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="618" r_length="226" r_score="0.923"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.76"/>
            <acceptor a_prob="0.819" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32585" g_stop="32690" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="728" r_length="110" r_score="0.821"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E564357" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30895" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACG-TCGACTATGATTT-TGATG-G-GGCACAGGAG-AA-GATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTG-AATGACCCATTCCTT-GGAAAAAGAGCTG-AAGAGGGCA-GTTTCTCCTCTGT-GCCATTGAGAG-ATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTG</genome_strand>
        <mrna_strand>GACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGCTCAACTATGATTTCTGATGCGACGCACAGGAGCAACGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAAATGACCCATTCCTTGGGAAAAAGAGCTGAAAGAGGGCAGGTTTCTCCTCTGTGGCTATTGAGAGAATGAAAT-CTTGAAAATGCTCG-CCTTTTATCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E452068" ref_strand="+" ref_description="SGN-E452068 [cSTS-15-F9]">
      <seq>gcttcaggagcggtaccagattggtccggacccgacagaggcattgtatcaatatgccaaattccagtttgaatgtggaaactactctggtgctgcggattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagaagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcattttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattntgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagatggcagtttctcctctgtgctattgagagatgaattccttgaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgcattggggggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30798" stop="33028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="30936" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="247" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="370" r_length="123" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="590" r_length="220" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.94"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="732" r_length="142" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32910" g_stop="32915" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="739" r_length="7" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E452068" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="32915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAG-AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAG-GGTTCT</genome_strand>
        <mrna_strand>GCTTCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCCGACAGAGGCATTGTATCAATATGCCAAATTCCAGTTTGAATGTGGAAACTACTCTGGTGCTGCGGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATTTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTNTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGATGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTG-AAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGCATTGGG......................................................................................................................................................................................GGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201867" ref_strand="+" ref_description="SGN-E201867 [cLEC-18-M11]">
      <seq>gctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctgtttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcggtacttggctattgcatttattgtcaacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30880" stop="32540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31180" g_stop="31335" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="278" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32240" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="472" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E201867" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31180" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCAC</genome_strand>
        <mrna_strand>GCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593279" ref_strand="+" ref_description="SGN-E593279 [36505]">
      <seq>cagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattatggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30898" stop="33275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31198" g_stop="31335" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="260" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="480" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="623" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32910" g_stop="32975" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="689" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E593279" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31198" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="32975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAG</genome_strand>
        <mrna_strand>CAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTATGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478474" ref_strand="+" ref_description="SGN-E478474 [cSTD-5-I7]">
      <seq>gcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaggaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcattttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagaggttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagatggcagtttctcctctgtgctattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="30914" stop="32950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31214" g_stop="31335" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="244" r_length="122" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="464" r_length="220" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32585" g_stop="32650" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="530" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E478474" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31214" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTG</genome_strand>
        <mrna_strand>GCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAGGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATTTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGGTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGATGGCAGTTTCTCCTCTGTGCTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701772" ref_strand="+" ref_description="SGN-E701772 [FA16DF06]">
      <seq>ctcgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctgtttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcggtacttggctattgcatttattgtcaacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaaatgtgcttatgttaattcctggatttccctttggaggaaattttgagatacatgatgaattatacattaatttcttttttatcttgnggttgtctccattggaagtggtatgcctttgcattttagtactccttttttgcatgaaaaaatttgtttttactgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31011" stop="33777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31311" g_stop="31335" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="147" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="367" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="510" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="648" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="33141" g_stop="33484" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="994" r_length="346" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E701772" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31311" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCC-TTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGT-GTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTTTTAGCTGGAATTTGCCA</genome_strand>
        <mrna_strand>CTCGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAAATGTGCTTATGTTAATTCCTGGATTTCCCTTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAATTTCTTTTTTATCTTGNGGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCCTTTTTTGCATGAAAAAATTTGTTTTTACTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E468171" ref_strand="+" ref_description="SGN-E468171 [cSTB-2-H8]">
      <seq>aaattatcgactcaaagagtttctctactccattgaatcaagttcaaaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31165" stop="33307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31319" g_stop="31335" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="139" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="359" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="502" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32910" g_stop="33007" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="600" r_length="98" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E468171" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31319" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTG</genome_strand>
        <mrna_strand>AAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCATTGAATCAAGTTCAAAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E584284" ref_strand="+" ref_description="SGN-E584284 [10107]">
      <seq>caaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgaaaaacttaacttgaaccttgaaggaggcagagcgattggataggtgaaatcttatccaggacctcaaaggcttgatggccaagatcgacactgaaaccgggacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31165" stop="33319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31331" g_stop="31335" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="127" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="347" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="490" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32910" g_stop="33019" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="607" r_length="117" r_score="0.845"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E584284" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31331" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTG-AGGAGGCAGAGCGA-TGGAT-GGTG-AATCTTAT-CAGGACCTCAAA-GCTTGAT-GCCAAGATAGACACTGAAACCGGGACAG</genome_strand>
        <mrna_strand>CAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAAAAACTTAACTTGAACCTTGAAGGAGGCAGAGCGATTGGATAGGTGAAATCTTATCCAGGACCTCAAAGGCTTGATGGCCAAGATCGACACTGAAACCGGGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726973" ref_strand="-" ref_description="SGN-E726973 [LA13BD11]">
      <seq>atcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctgtttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcggtacttggctattgcatttattgtcaacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31186" stop="33690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31486" g_stop="31588" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="323" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="466" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="604" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33141" g_stop="33390" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="854" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E726973" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726973" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31486" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTT</genome_strand>
        <mrna_strand>ATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E606208" ref_strand="+" ref_description="SGN-E606208 [22147]">
      <seq>atcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagnctaatgtgtatgagcaggtcatcgatcacaccaagcccctttctggacgcacttacaaaattagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31186" stop="33497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31486" g_stop="31588" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="323" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="466" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="604" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.96"/>
            <acceptor a_prob="0.888" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33141" g_stop="33197" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="662" r_length="58" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E606208" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31486" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTAC-AAATTAGT</genome_strand>
        <mrna_strand>ATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGNCTAATGT.............................................................................................GTATGAGCAGGTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAAATTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E589071" ref_strand="+" ref_description="SGN-E589071 [42637]">
      <seq>attcatcttcttcaaccatgacaatggcaggacactgatcattgacctatttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcgatacttggctattgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtggtatttttaatgcctggatttcccttggaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31226" stop="33653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31526" g_stop="31588" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="283" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="426" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="564" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33141" g_stop="33353" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="776" r_length="212" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E589071" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31526" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAA</genome_strand>
        <mrna_strand>ATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTATTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGATACTTGGCTATTGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TGGTATTTTTAATGCCTGGATTTCCCTTGGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591273" ref_strand="-" ref_description="SGN-E591273 [44982]">
      <seq>aaccaggacaaatactttgaatgcccattcaaaccaagtgctcccccactttgctgcgaatactttggctattgcatttatttgtcaacaaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtttcgtataactatttctttgttatcttatgttgtctccattggaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31790" stop="33720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="240" r_length="229" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="383" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="521" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="760" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E591273" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591273" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAC-TTGAATGC-CATTCAAA-CAAGTGCT-CCCCACT-TGCTGCG-GTACT-TGGCTATTGCATTTATT-GTCAACAAA-AGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>ATACTTTGAATGCCCATTCAAACCAAGTGCTCCCCCACTTTGCTGCGAATACTTTGGCTATTGCATTTATTTGTCAACAAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E416207" ref_strand="-" ref_description="SGN-E416207 [STM-22-N17]">
      <seq>tgcatttattgtcaacaagagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgcaaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtgtagtattactatttctttgtaaaaaaaaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31801" stop="33680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32101" g_stop="32266" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="309" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="447" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="686" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E416207" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E416207" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32101" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>TGCATTTATTGTCAACAAGAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242834" ref_strand="+" ref_description="SGN-E242834 [cLED-31-F18]">
      <seq>aacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31814" stop="33505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32114" g_stop="32266" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="296" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="434" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33205" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="499" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E242834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32114" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGC</genome_strand>
        <mrna_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242143" ref_strand="+" ref_description="SGN-E242143 [cLED-37-B18]">
      <seq>aacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31814" stop="33465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32114" g_stop="32266" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="296" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="434" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33165" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="459" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E242143" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242143" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32114" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACC</genome_strand>
        <mrna_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233607" ref_strand="+" ref_description="SGN-E233607 [cLED-14-G1]">
      <seq>aacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31814" stop="33318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32114" g_stop="32266" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="296" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33018" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="405" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E233607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32114" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACA</genome_strand>
        <mrna_strand>AACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E591232" ref_strand="-" ref_description="SGN-E591232 [44939]">
      <seq>cactcttgcaaagatcccatcacagagtttttggcatgtatgtacgtcaactatgattctgatggagcacagggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtttcgtataactatttctttgttatcttatgttgtctccattggaagtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31871" stop="33720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32171" g_stop="32266" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.90"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="240" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="378" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="617" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E591232" ref_strand="-">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591232" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32171" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACA-GGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>CACTCTTGCAAAGATCCCATCACAGAGTTTTTGGCATGTATGTACGTCAACTATGATTCTGATGGAGCACAGGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477526" ref_strand="+" ref_description="SGN-E477526 [cSTB-48-O4]">
      <seq>caaagatcccatcacagagtttttggcatgtatttacgtcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagatggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcggtggatagtgaatcttatcaggacctcaaagcttgatgccaagattgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtttcgtattactatttctttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31880" stop="33680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32179" g_stop="32266" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="231" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="369" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="608" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="636" polyA_stop="645"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E477526" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32179" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>CAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGATGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGGTGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATTGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E562350" ref_strand="+" ref_description="SGN-E562350 [790]">
      <seq>tatttacttcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattcctttgaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgatgaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagntcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttcttgaacatgcacaaacacaatttgctagatagtttggttgaagacattaagctcgtgccaatttttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31909" stop="33576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32209" g_stop="32266" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="201" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="339" r_length="138" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33276" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="476" r_length="137" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E562350" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E562350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32209" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAA-TTTTGCA</genome_strand>
        <mrna_strand>TATTTACTTCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTTGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGATGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGNTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTTGAACATGCACAAACACAATTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417670" ref_strand="-" ref_description="SGN-E417670 [STM-25-J16]">
      <seq>tcaactatgattttgatggagcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31917" stop="33673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32217" g_stop="32266" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.96"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="193" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="331" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33373" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="565" r_length="234" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E417670" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417670" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32217" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAAT</genome_strand>
        <mrna_strand>TCAACTATGATTTTGATGGAGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735180" ref_strand="+" ref_description="SGN-E735180 [LB14CF03]">
      <seq>caggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttatcttgtgttgtctccattggaagtggtatgcctttgcattttagtactcgtttttgccatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31940" stop="33761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32240" g_stop="32266" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="170" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="308" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33467" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="635" r_length="327" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E735180" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32240" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTT</genome_strand>
        <mrna_strand>CAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417531" ref_strand="-" ref_description="SGN-E417531 [STM-25-J5]">
      <seq>gagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgctattgagagatgaattccttgaaaatgctcgcctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgttacgtataactatttctttgttaaaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="31943" stop="33680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32243" g_stop="32266" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="167" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="305" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="544" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E417531" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417531" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32243" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>GAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCTATTGAGAGATGAATTCCTTGAAAATGCTCGCCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356797" ref_strand="+" ref_description="SGN-E356797 [cTOS-21-H8]">
      <seq>gagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttatcttgtgttgtctccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32271" stop="33710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="155" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="293" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33409" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="562" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="563" polyA_stop="574"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E356797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCC</genome_strand>
        <mrna_strand>CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E340939" ref_strand="+" ref_description="SGN-E340939 [cTOF-5-G4]">
      <seq>agagagagaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattataccattagtttcttttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32266" stop="73236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="165" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="303" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33403" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="567" r_length="264" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E340939" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATA-CATTAGTTTCTTTTTTATCTTGTGTT</genome_strand>
        <mrna_strand>CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACCATTAGTTTCTTTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356344" ref_strand="+" ref_description="SGN-E356344 [cTOS-20-M4]">
      <seq>tccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32304" stop="73236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32604" g_stop="32727" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="262" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33404" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="526" r_length="264" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E356344" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32604" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTG</genome_strand>
        <mrna_strand>TCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357581" ref_strand="+" ref_description="SGN-E357581 [cTOS-23-L8]">
      <seq>tttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagnttcttttttatcttgggntgtctccattggaagtggtatgcctttgcattttagtactcgtttttgccatgaaaaaatttgttttagctggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32332" stop="33777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32632" g_stop="32727" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="234" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33476" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="570" r_length="336" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="589"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E357581" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32632" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTTTTAGCTGGA</genome_strand>
        <mrna_strand>TTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGNTTCTTTTTTATCTTGGGNTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTTTTAGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357335" ref_strand="+" ref_description="SGN-E357335 [cTOS-23-K8]">
      <seq>tttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32332" stop="33696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32632" g_stop="32727" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="234" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33396" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="490" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E357335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32632" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATC</genome_strand>
        <mrna_strand>TTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E598636" ref_strand="+" ref_description="SGN-E598636 [51606]">
      <seq>caccaacgcattgacatgggggttctagctgagaaacttaacttgaaccttgaggaggcagagcgatggatagtgaatcttatcaggacctcaaagcttgatgccaagatcgacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtatgagcagctcatcgatcacaccaagcccctttctggacgcacttacaaattagtcagccagcttctcgaacatgcacaaacacaacttgctagatagtttggttgaagacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgtttgttttttttaatgcctggatttcccttggaggaaattttgatatacatgatgaattatacatcgtttcgtattactatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32408" stop="33680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32708" g_stop="32727" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="158" r_length="138" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33141" g_stop="33378" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="397" r_length="239" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="418" polyA_stop="427"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E598636" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E598636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32708" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATG-TTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATAC</genome_strand>
        <mrna_strand>CACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAACTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATAGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATCGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTATGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACTTACAAATTAGTCAGCCAGCTTCTCGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAAGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTTGTTTTTTTTAATGCCTGGATTTCCCTTGGAGGAAATTTTGATATACATGATGAATTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209022" ref_strand="-" ref_description="SGN-E209022 [cLEC-38-H9]">
      <seq>ctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="32614" stop="73236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32914" g_stop="33047" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33141" g_stop="33393" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="387" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33394" i_stop="33639" i_length="246">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33640" g_stop="33660" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="408" r_length="21" r_score="0.619"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E209022" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209022" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32914" e_stop="33047"/>
          <exon e_start="33141" e_stop="33393"/>
          <exon e_start="33640" e_stop="33660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTTTTAGCTGGAATTTGCCAGGGCATTTTGTTTCATATGATGCTTTACTCTTCGCTCGTGATCACTTAGAGCCCTCTGTTCATCAATAGGTACATAATAAATCTAGTGTCCATTACAAGGCGATGTCAATGCATTATTTTTGGTTAAATATTTTGGAAAATCAATTCATCTATAGATGACAAATTCAAAAAATGAA</genome_strand>
        <mrna_strand>CTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTT......................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E210850" ref_strand="+" ref_description="SGN-E210850 [cLEC-68-J14]">
      <seq>ttttcttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatacttttgcatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgntgtgaatgataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50579" stop="52026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50879" g_stop="50983" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51726" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="725" r_length="620" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E210850" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50879" e_stop="50983"/>
          <exon e_start="51107" e_stop="51726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAAT</genome_strand>
        <mrna_strand>TTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTTGCATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGNTGTGAATGATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692589" ref_strand="+" ref_description="SGN-E692589 [LH_Ea09B19]">
      <seq>ccgttttctttgccaattgccatggcttgtaccaaactacatcttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50584" stop="52121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50881" g_stop="50983" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51821" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="818" r_length="715" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692589" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50881" e_stop="50983"/>
          <exon e_start="51107" e_stop="51821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATC</genome_strand>
        <mrna_strand>CCGTTTTCTTTGCCAATTGCCATGGCTTGTACCAAACTACATCTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693280" ref_strand="+" ref_description="SGN-E693280 [LH_Ea10O14]">
      <seq>cttttctttgccaattgccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50583" stop="52059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50883" g_stop="50983" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51759" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="754" r_length="653" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693280" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50883" e_stop="50983"/>
          <exon e_start="51107" e_stop="51759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTC</genome_strand>
        <mrna_strand>CTTTTCTTTGCCAATTGCCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211384" ref_strand="+" ref_description="SGN-E211384 [cLEC-67-G19]">
      <seq>ttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatccccctggagttgttgtgaatgataatggaagagaataccgcacttatttgatgcactcttagatgctacatactcggccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50584" stop="52082"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50884" g_stop="50983" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51782" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="776" r_length="676" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E211384" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50884" e_stop="50983"/>
          <exon e_start="51107" e_stop="51782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCC-CCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCT</genome_strand>
        <mrna_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGC-ACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209737" ref_strand="+" ref_description="SGN-E209737 [cLEC-52-G4]">
      <seq>ttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50584" stop="51950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50884" g_stop="50983" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51650" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="644" r_length="544" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E209737" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50884" e_stop="50983"/>
          <exon e_start="51107" e_stop="51650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTT</genome_strand>
        <mrna_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214192" ref_strand="+" ref_description="SGN-E214192 [cLEC-77-M1]">
      <seq>ttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaagaaaccagatcaaagtttctactgctattgaaacccgacttactacagatacttaccctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50584" stop="51847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50884" g_stop="50983" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51547" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="541" r_length="441" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E214192" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50884" e_stop="50983"/>
          <exon e_start="51107" e_stop="51547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCAT</genome_strand>
        <mrna_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAAGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCCGACTTACTACAGATACTTACCCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214200" ref_strand="+" ref_description="SGN-E214200 [cLEC-77-O5]">
      <seq>ttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50584" stop="51847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50884" g_stop="50983" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51547" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="541" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E214200" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50884" e_stop="50983"/>
          <exon e_start="51107" e_stop="51547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCAT</genome_strand>
        <mrna_strand>TTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405419" ref_strand="+" ref_description="SGN-E405419 [PPC-18-A6]">
      <seq>cttttctttgccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50597" stop="51992"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50888" g_stop="50983" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51692" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="680" r_length="586" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E405419" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405419" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50888" e_stop="50983"/>
          <exon e_start="51107" e_stop="51692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTT</genome_strand>
        <mrna_strand>CTTT-TC-TTTGCCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288615" ref_strand="+" ref_description="SGN-E288615 [cLES-8-I23]">
      <seq>ctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctgatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcaagatgtgcctttcgtggatcaatgcaatgagaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50588" stop="51755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50888" g_stop="50983" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51455" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="446" r_length="350" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E288615" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50888" e_stop="50983"/>
          <exon e_start="51107" e_stop="51455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGT-GATCAATGCAATGAGAAACAT</genome_strand>
        <mrna_strand>CTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTGATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAAGATGTGCCTTTCGTGGATCAATGCAATGAGAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319007" ref_strand="+" ref_description="SGN-E319007 [cTOB-14-J22]">
      <seq>tttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttatatttcacatgtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgttatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaaggctaggaactatggtaatgttaagttcaggtatatagctgatggaaatgaagttggtgcattaaatggcgacgcgcaatatgtgcctttcgtgatcaatgcgatgagaaacattcagaacgcgattgctggcgctggtctacgaaaccagatcaaagtgtctactgctattgaaaccgaacttactacagatacttaccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50589" stop="51845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50889" g_stop="50983" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51545" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="534" r_length="439" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E319007" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50889" e_stop="50983"/>
          <exon e_start="51107" e_stop="51545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCC</genome_strand>
        <mrna_strand>TTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTATATTTCACAT...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTTATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAAGGCTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGATGGAAATGAAGTTGGTGCATTAAATGGCGACGCGCAATATGTGCCTTTCGTGATCAATGCGATGAGAAACATTCAGAACGCGATTGCTGGCGCTGGTCTACGAAACCAGATCAAAGTGTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319094" ref_strand="+" ref_description="SGN-E319094 [cTOB-14-L14]">
      <seq>tttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50589" stop="51790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50889" g_stop="50983" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51490" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="479" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E319094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50889" e_stop="50983"/>
          <exon e_start="51107" e_stop="51490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACC</genome_strand>
        <mrna_strand>TTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288373" ref_strand="+" ref_description="SGN-E288373 [cLES-16-K9]">
      <seq>gccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatncatactttgcaatagcaaacaatcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50592" stop="51971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50892" g_stop="50983" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51671" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="657" r_length="565" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E288373" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50892" e_stop="50983"/>
          <exon e_start="51107" e_stop="51671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGC</genome_strand>
        <mrna_strand>GCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATNCATACTTTGCAATAGCAAACAATCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206937" ref_strand="+" ref_description="SGN-E206937 [cLEC-33-K11]">
      <seq>caattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50594" stop="51847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50894" g_stop="50983" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51547" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="531" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E206937" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50894" e_stop="50983"/>
          <exon e_start="51107" e_stop="51547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCAT</genome_strand>
        <mrna_strand>CAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202667" ref_strand="+" ref_description="SGN-E202667 [cLEC-19-L3]">
      <seq>caattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50594" stop="51669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50894" g_stop="50983" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51369" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="353" r_length="263" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E202667" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202667" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50894" e_stop="50983"/>
          <exon e_start="51107" e_stop="51369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTC</genome_strand>
        <mrna_strand>CAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402505" ref_strand="+" ref_description="SGN-E402505 [PPC-7-N2]">
      <seq>ctttgccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaactttactacagatacttaccctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50597" stop="51846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50895" g_stop="50983" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51546" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="530" r_length="441" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E402505" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50895" e_stop="50983"/>
          <exon e_start="51107" e_stop="51546"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAAC-TTACTACAGATACTTACCCTCCA</genome_strand>
        <mrna_strand>CTTTGCCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTTACTACAGATACTTACCCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744822" ref_strand="+" ref_description="SGN-E744822 [GI|498925]">
      <seq>cggcacgagattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgcaaatcctgaccttcagaatatcggcgtctagccaagctaacgcgaatcgttgggtcaaacatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttagtcgatcttttgttgttataatatgtagttgaataatcgaatcgttgctcaacttgaaaacagagcaacccttcgcatgatatgtactcatcctacatgcttatataaggcaattatttctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50592" stop="52510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50896" g_stop="50983" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="97" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="52210" g_length="1104"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="1198" r_length="1101" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E744822" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1192</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50896" e_stop="50983"/>
          <exon e_start="51107" e_stop="52210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATC-GCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACT</genome_strand>
        <mrna_strand>ATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTG-CAAATCCTGACCTTCAGAATATCGGCGTCTAGCCAAGCTAACGCGAATCGTTGGGT-C-AAAC-ATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTGTTGTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690350" ref_strand="+" ref_description="SGN-E690350 [LH_Ea03E12]">
      <seq>tttgccatggcttgtaccaaactacattttccaattaccgtgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcaaagagcgggtggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50597" stop="52189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50896" g_stop="50983" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51889" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="871" r_length="783" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E690350" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50896" e_stop="50983"/>
          <exon e_start="51107" e_stop="51889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACA</genome_strand>
        <mrna_strand>TTTGCCATGGCTTGTACCAAACTACATTTTCCAATTACCGTGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAAAGAGCGGGTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692434" ref_strand="+" ref_description="SGN-E692434 [LH_Ea08L08]">
      <seq>cctcgtgccgaattcggcacgaggattgccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggccccttgaaaaagccggtggttcatctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50596" stop="52108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50901" g_stop="50983" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="112" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51808" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="815" r_length="703" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692434" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50901" e_stop="50983"/>
          <exon e_start="51107" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGG-CCCTTGAAAAAGCCGGTGGTTCATCTTTGG</genome_strand>
        <mrna_strand>CATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCCTTGAAAAAGCCGGTGGTTCATCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689944" ref_strand="+" ref_description="SGN-E689944 [LH_Ea02D14]">
      <seq>cgcttagagccgaattcggcacgaggcatggcttgtaccaccctacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50601" stop="52105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50901" g_stop="50983" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="109" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51805" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="808" r_length="699" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E689944" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50901" e_stop="50983"/>
          <exon e_start="51107" e_stop="51805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTT</genome_strand>
        <mrna_strand>CATGGCTTGTACCACCCTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692387" ref_strand="+" ref_description="SGN-E692387 [LH_Ea08J09]">
      <seq>ccggtttcttgccgaatcgggacgaaggccagttgccatggctcgtaccaaactacattttcccattaccgcgacgactctgctggtgatacttatattggctaccttaaatttcacatgagcacaaacaggagtttgatctggaagaaatgggaatggattaccctctccagctgatgtagtggctctatgcaatcgaaacaatgtactaataatgagaatctatgatcctcatccaccgactctccaaggccttagaggctccattattgaactcatattaggcgggccgaatcctgatcttcggaacatatcgtctgcccaagctaacgcgattgcttgggtccagaacaatgttacgaactatgggaatgttcagttcaggtatatatctgatggaaatgaaatgattccattaagtggaaacacgcagtatgtacctttcgtgatcaatgcgatgagaaacattcagaacgcgatttctggagctggcctaggaaacctgatcaaagaatctactgctatggaaaccgaacttactacagatactcaccctccatcaagaggcaagtttcaagacaacgtccgagggtatgttgatcccatcattatatcctgagtagctaaccgctcaccttcacttgtcgacatatatccatacttcgctctagcagacaatcaagctattaagcttgactacgcgttgtttacatcccctggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50592" stop="52011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50901" g_stop="50983" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="119" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51711" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="724" r_length="605" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692387" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50901" e_stop="50983"/>
          <exon e_start="51107" e_stop="51711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTT</genome_strand>
        <mrna_strand>CATGGCTCGTACCAAACTACATTTTCCCATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAAATTTCACAT...........................................................................................................................GAGCACAAACAGGAGTTTGATCTGGAAGAAATGGGAATGGATTACCCTCTCCAGCTGATGTAGTGGCTCTATGCAATCGAAACAATGTACTAATAATGAGAATCTATGATCCTCATCCACCGACTCTCCAAGGCCTTAGAGGCTCCATTATTGAACTCATATTAGGCGGGCCGAATCCTGATCTTCGGAACATATCGTCTGCCCAAGCTAACGCGATTGCTTGGGTCCAGAACAATGTTACGAACTATGGGAATGTTCAGTTCAGGTATATATCTGATGGAAATGAAATGATTCCATTAAGTGGAAACACGCAGTATGTACCTTTCGTGATCAATGCGATGAGAAACATTCAGAACGCGATTTCTGGAGCTGGCCTAGGAAACCTGATCAAAGAATCTACTGCTATGGAAACCGAACTTACTACAGATACTCACCCTCCATCAAGAGGCAAGTTTCAAGACAACGTCCGAGGGTATGTTGATCCCATCATTATATCCTGAGTAGCTAACCGCTCACCTTCACTTGTCGACATATATCCATACTTCGCTCTAGCAGACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402658" ref_strand="+" ref_description="SGN-E402658 [PPC-8-G24]">
      <seq>gcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgctgtttacatcccctggagttgttgtaaatgataatggaagaagataccggaacttatttgatgcactcttagatgctacatactcagcccttgaaaaagccggtggctcatctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50605" stop="52108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50905" g_stop="50983" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51808" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="781" r_length="702" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E402658" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50905" e_stop="50983"/>
          <exon e_start="51107" e_stop="51808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGG</genome_strand>
        <mrna_strand>GCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCTGTTTACATCCCCTGGAGTTGTTGTAAATGATAATGGAAGAAGATACCGGAACTTATTTGATGCACTCTTAGATGCTACATACTCAGCCCTTGAAAAAGCCGGTGGCTCATCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E403366" ref_strand="+" ref_description="SGN-E403366 [PPC-10-K24]">
      <seq>cttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgctgtttacatcccctggagttgttgtaaatgataatggaaagagataccggaacttatttgatgcactcttagatgctacatactcagccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50606" stop="52083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50906" g_stop="50983" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51783" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="755" r_length="677" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E403366" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50906" e_stop="50983"/>
          <exon e_start="51107" e_stop="51783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTT</genome_strand>
        <mrna_strand>CTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCTGTTTACATCCCCTGGAGTTGTTGTAAATGATAATGGAAAGAGATACCGGAACTTATTTGATGCACTCTTAGATGCTACATACTCAGCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E613344" ref_strand="+" ref_description="SGN-E613344 [63117]">
      <seq>cttataccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaaatttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgntcacctttacttgtcaatatatatccttactttgcaatagcaaacaatcaagctattcaacttgactacgcgctgtttacatcccctggagttgttgtaaatgataatggaagagaataccggaaacctgtttgatgcactcttagatgctacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50606" stop="52075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50906" g_stop="50983" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51775" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="748" r_length="670" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E613344" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50906" e_stop="50983"/>
          <exon e_start="51107" e_stop="51775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACC-GCAACTTATTTGATGCACTCTTAGATGCTACATACT</genome_strand>
        <mrna_strand>CTTATACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAATTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGNTCACCTTTACTTGTCAATATATATCCTTACTTTGCAATAGCAAACAATCAAGCTATTCAACTTGACTACGCGCTGTTTACATCCCCTGGAGTTGTTGTAAATGATAATGGAAGAGAATACCGGAAACCTGTTTGATGCACTCTTAGATGCTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207234" ref_strand="+" ref_description="SGN-E207234 [cLEC-30-D24]">
      <seq>ttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50607" stop="51873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50907" g_stop="50983" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51573" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="544" r_length="467" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E207234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50907" e_stop="50983"/>
          <exon e_start="51107" e_stop="51573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTC</genome_strand>
        <mrna_strand>TTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702487" ref_strand="+" ref_description="SGN-E702487 [FA18DD12]">
      <seq>gcactaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50609" stop="52173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50909" g_stop="50983" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51873" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="842" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E702487" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50909" e_stop="50983"/>
          <exon e_start="51107" e_stop="51873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAAC</genome_strand>
        <mrna_strand>GCACTAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692809" ref_strand="+" ref_description="SGN-E692809 [LH_Ea09K23]">
      <seq>tccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaaatgacctctattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50612" stop="52170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50911" g_stop="50983" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51870" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="837" r_length="764" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692809" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50911" e_stop="50983"/>
          <exon e_start="51107" e_stop="51870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGAC</genome_strand>
        <mrna_strand>TCCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAAATGACCTCTATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206221" ref_strand="+" ref_description="SGN-E206221 [cLEC-29-B2]">
      <seq>tccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatccaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctctaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgctggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50625" stop="51778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50925" g_stop="50983" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51478" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="431" r_length="372" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E206221" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50925" e_stop="50983"/>
          <exon e_start="51107" e_stop="51478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTG</genome_strand>
        <mrna_strand>TCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCCAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCTAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGCTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693234" ref_strand="+" ref_description="SGN-E693234 [LH_Ea10M16]">
      <seq>tcaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcaggggcattgacctctattgacaacgcgaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50627" stop="52182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50926" g_stop="50983" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51882" g_length="776"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="834" r_length="776" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693234" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50926" e_stop="50983"/>
          <exon e_start="51107" e_stop="51882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACT</genome_strand>
        <mrna_strand>TCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGGCATTGACCTCTATTGACAACGCGAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203511" ref_strand="+" ref_description="SGN-E203511 [cLEC-15-C17]">
      <seq>ttaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50630" stop="51777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50930" g_stop="50983" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51477" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="425" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E203511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50930" e_stop="50983"/>
          <exon e_start="51107" e_stop="51477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCT</genome_strand>
        <mrna_strand>TTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401948" ref_strand="+" ref_description="SGN-E401948 [PPC-5-H4]">
      <seq>ccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgctgtttacatccccctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50633" stop="52009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50933" g_stop="50983" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51709" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="655" r_length="604" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E401948" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E401948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50933" e_stop="50983"/>
          <exon e_start="51107" e_stop="51709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACAT-CCCCTGGAG</genome_strand>
        <mrna_strand>CCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCTGTTTACATCCCCCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278246" ref_strand="+" ref_description="SGN-E278246 [cLER-9-K24]">
      <seq>ccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgattcttagtggaggaatgagaatctatgatcctcatcaagcaactctccaagccgtgagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatncatactttgcaatagcaaacaatcaagctattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50633" stop="51977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50933" g_stop="50983" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51677" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="621" r_length="570" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E278246" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50933" e_stop="50983"/>
          <exon e_start="51107" e_stop="51677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAA</genome_strand>
        <mrna_strand>CCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGATTC-TTAGTGGAGGAATGAGAATCTATGATCCTCATCAAGCAACTCTCCAAGCCGTGAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATNCATACTTTGCAATAGCAAACAATCAAGCTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690103" ref_strand="+" ref_description="SGN-E690103 [LH_Ea02K05]">
      <seq>cctcgtgccgaattcggcacgaggaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggncattgacctctatttgacacgcgaggacttacaacaacaacttgattagacatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50627" stop="52212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50934" g_stop="50983" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="76" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51912" g_length="806"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="882" r_length="806" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E690103" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50934" e_stop="50983"/>
          <exon e_start="51107" e_stop="51912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</genome_strand>
        <mrna_strand>CGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGNCATTGACCTCTATTTGACACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288226" ref_strand="+" ref_description="SGN-E288226 [cLES-16-A15]">
      <seq>gactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgctatggaagaaatgggaatggattaccatcttcagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcacaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactattgtaatgttaagttcaagtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctatgaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatcttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatgcatactttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50640" stop="51953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50940" g_stop="50983" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51653" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="591" r_length="547" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E288226" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50940" e_stop="50983"/>
          <exon e_start="51107" e_stop="51653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGC</genome_strand>
        <mrna_strand>GACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGCTATGGAAGAAATGGGAATGGATTACCATCTTCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCACAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATTGTAATGTTAAGTTCAAGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTATGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATCTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATGCATACTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476083" ref_strand="+" ref_description="SGN-E476083 [cSTB-43-C16]">
      <seq>ctggtgatacttatattggctaccttagatttcacaggagcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagtagatgttgtggctctatgcaatggaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagcccttagaggctcgaatattgaactcattctaggagtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgtcaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgacaaacattcaaaacgcgatttctggtgctggtcttggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50647" stop="51842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50947" g_stop="50983" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51542" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="473" r_length="436" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E476083" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50947" e_stop="50983"/>
          <exon e_start="51107" e_stop="51542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCC</genome_strand>
        <mrna_strand>CTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GAGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGTAGATGTTGTGGCTCTATGCAATGGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATTCTAGGAGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTCAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGACAAACATTCAAAACGCGATTTCTGGTGCTGGTCTTGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214218" ref_strand="+" ref_description="SGN-E214218 [cLEC-77-G10]">
      <seq>ttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagaaaatacgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50657" stop="52088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50957" g_stop="50983" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51788" g_length="682"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="708" r_length="681" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E214218" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214218" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50957" e_stop="50983"/>
          <exon e_start="51107" e_stop="51788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAA</genome_strand>
        <mrna_strand>TTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAAAATA-CGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287730" ref_strand="+" ref_description="SGN-E287730 [cLES-9-H24]">
      <seq>atattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagttcattaaatggcaacgcgcagtatgtgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50659" stop="51729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50959" g_stop="50983" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51429" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="348" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E287730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50959" e_stop="50983"/>
          <exon e_start="51107" e_stop="51429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCT</genome_strand>
        <mrna_strand>ATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTTCATTAAATGGCAACGCGCAGTATGTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287272" ref_strand="+" ref_description="SGN-E287272 [cLES-15-O3]">
      <seq>gaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50831" stop="51973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51131" g_stop="51673" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E287272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51131" e_stop="51673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTA</genome_strand>
        <mrna_strand>GAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201033" ref_strand="+" ref_description="SGN-E201033 [cLEC-5-H8]">
      <seq>gtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggatatagctgttggaatgaagtagtccattaaatggaacgcgcgtatgtgcctttcggatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50869" stop="51836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51169" g_stop="51536" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E201033" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.017" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51169" e_stop="51536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATAC</genome_strand>
        <mrna_strand>GTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGG-ATATAGCTGTTGG-AATGAAG-TAGTCCATTAAATGG-AACGCGC-GTATGTGCCTTTCG-GATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201339" ref_strand="+" ref_description="SGN-E201339 [cLEC-4-E2]">
      <seq>tctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50874" stop="52076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51174" g_stop="51776" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E201339" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201339" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51174" e_stop="51776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTC</genome_strand>
        <mrna_strand>TCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692650" ref_strand="+" ref_description="SGN-E692650 [LH_Ea09E08]">
      <seq>tcaactctccaagcccttagaggctcgaatattgaactcatactaggcgtgccaaatcctgatcttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagcccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaataccccatcagttttcactagctagactatgctacggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50927" stop="52378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51226" g_stop="52078" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692650" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51226" e_stop="52078"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAG-CCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAAT</genome_strand>
        <mrna_strand>TCAACTCTCCAAGCCCTTAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGATCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCCATCAGTTTTCACTAGCTAGACTATGCTACGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351905" ref_strand="+" ref_description="SGN-E351905 [cTOS-8-L5]">
      <seq>cgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaagcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttggttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51020" stop="52075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51320" g_stop="51775" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E351905" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51320" e_stop="51775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACT</genome_strand>
        <mrna_strand>CGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAAGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGGTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354880" ref_strand="+" ref_description="SGN-E354880 [cTOS-19-J4]">
      <seq>cgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51020" stop="51772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51320" g_stop="51472" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E354880" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51320" e_stop="51472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTG</genome_strand>
        <mrna_strand>CGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696490" ref_strand="+" ref_description="SGN-E696490 [LH_Ea09E08](-)">
      <seq>ggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtaatgatcctacatgcttatataatgtgatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51030" stop="52502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51330" g_stop="52195" g_length="866"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="872" polyA_stop="890"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696490" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51330" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTAATGATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690718" ref_strand="+" ref_description="SGN-E690718 [LH_Ea04D20]">
      <seq>ctgtagggttttttactaattaggttattcaatcacatcctttaagcatgtaggatgagtacatatcacgcgaagggttgctctctgttcaagttgagcaacgattcaattattcaactacatattataagaagaaaagatcgacaactcttattccgtagcatagtctagctagttgaaactgattgggtattttggctgcctgtttggtgtaaacagtccaaaatgtttctcaatttcagggctcttgagattttcatcaaacaacgcgaaaatgtaagcctcaataggctttgatggtcttttcggactccctcttttcacatgtctaatcaagttgttgttgtaagtcctcgcgttgtcaatagaggtcaattgccctgctccagctgaaggccaaccgctctctgatacaacgatatccaaagatgaaccaccggctttttcaagggccgagtatgtagcatctaagagtgcatcaaataagttgcggtattctcttccattatcattcacaacaactccaggggatgtaaacaacgcgtagtcaagcttaatagcttgattgtttgctattgcaaagtatggatatatgttgacaagtaaaggtgagcggttagctactaagaatctaatgatgggatcaacataccctcggacgttgtctttaaacttgcctcttgatggagggtaagtatctgtagtaagttcggtttcaatagcagtagaaactttgatctggtttcctagaccagcaccagaaatcgcgttctgaatgtttctcattgcattgatcacgaaaggtacatactgcgcgttaccatttaatggactaacttcatttccacagctatatacctgaacttaacattaccatagttcctaacattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="52562" stop="51037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52178" g_stop="51337" g_length="842"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="893" r_length="840" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E690718" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52178" e_stop="51337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGTACATATCATGCGAAGGGTTGCTCTGTTTTCAAGTTGAGCAACGATTCGATTATTCAACTACATATTATAAGAAGAAAAGATCGACTAACTCTTATTCCGTAGCATAGTCTAGCTAGTTGAAACTGATTGGGTATTTTGGCTGCCTGTTTGGTGTAAACAGTCCAAAATGTTTCTCAATTTCAGGGCTCTTGAGATTTTCATTAAACAAGGCGAAAATGTAAGCCTCAATAGGCTTTGATGGTCTTTTCGGACTCCCTCTTTTCACATGTCTAATCAAGTTGTTGTTGTAAGTCCTCGCGTTGTCAATAGAGGTCAATTGCCCTGCTCCAGCTGAAGGCCAACCGCTCTCTGATACAACGATATCCAAAGATGAACCACCGGCTTTTTCAAGGGCCGAGTATGTAGCATCTAAGAGTGCATCAAATAAGTTGCGGTATTCTCTTCCATTATCATTCACAACAACTCCAGGGGATGTAAACAACGCGTAGTCAAGCTTAATAGCTTGATTGTTTGCTATTGCAAAGTATGGATATATGTTGACAAGTAAAGGTGAGCGGTTAGCTACTAAGAATCTAATGATGGGATCAACATACCCTCGGACGTTGTCTTTAAACTTGCCTCTTGATGGAGGGTAAGTATCTGTAGTAAGTTCGGTTTCAATAGCAGTAGAAACTTTGATCTGGTTTCCTAGACCAGCGCCAGAAATCGCGTTCTGAATGTTTCTCATTGCATTGATCACGAAAGGCACATACTGCGCGTTGCCATTTAATGGACTAACTTCATTTCCAACAGCTATATACCTGAACTTAACATTACCATAGTTCCTAACATTGTT</genome_strand>
        <mrna_strand>GATGAGTACATATCACGCGAAGGGTTGCTCTCTGTTCAAGTTGAGCAACGATTCAATTATTCAACTACATATTATAAGAAGAAAAGATCGAC-AACTCTTATTCCGTAGCATAGTCTAGCTAGTTGAAACTGATTGGGTATTTTGGCTGCCTGTTTGGTGTAAACAGTCCAAAATGTTTCTCAATTTCAGGGCTCTTGAGATTTTCATCAAACAACGCGAAAATGTAAGCCTCAATAGGCTTTGATGGTCTTTTCGGACTCCCTCTTTTCACATGTCTAATCAAGTTGTTGTTGTAAGTCCTCGCGTTGTCAATAGAGGTCAATTGCCCTGCTCCAGCTGAAGGCCAACCGCTCTCTGATACAACGATATCCAAAGATGAACCACCGGCTTTTTCAAGGGCCGAGTATGTAGCATCTAAGAGTGCATCAAATAAGTTGCGGTATTCTCTTCCATTATCATTCACAACAACTCCAGGGGATGTAAACAACGCGTAGTCAAGCTTAATAGCTTGATTGTTTGCTATTGCAAAGTATGGATATATGTTGACAAGTAAAGGTGAGCGGTTAGCTACTAAGAATCTAATGATGGGATCAACATACCCTCGGACGTTGTCTTTAAACTTGCCTCTTGATGGAGGGTAAGTATCTGTAGTAAGTTCGGTTTCAATAGCAGTAGAAACTTTGATCTGGTTTCCTAGACCAGCACCAGAAATCGCGTTCTGAATGTTTCTCATTGCATTGATCACGAAAGGTACATACTGCGCGTTACCATTTAATGGACTAACTTCATTTCC-ACAGCTATATACCTGAACTTAACATTACCATAGTTCCTAACATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696274" ref_strand="+" ref_description="SGN-E696274 [LH_Ea08L08](-)">
      <seq>aagttcaggtatatagctgttggaaatgaagttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcgtcctacatgcttatataatgtgatgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51064" stop="52502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51364" g_stop="52195" g_length="832"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="838" polyA_stop="854"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696274" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51364" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>AAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCGTCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694503" ref_strand="+" ref_description="SGN-E694503 [LH_Ea04B13](-)">
      <seq>gttcaggtatatagctgttggaaatgaagctagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccctgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattcacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagcccaaatacccaatcagtttcaactagctagactatgctaccgaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaataagggtctcaacttgaacagagagcaacccttcgcgtccttatagtcatcctacatgcttatataatgtgatgaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51066" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51366" g_stop="52195" g_length="830"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="836" polyA_stop="851"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E694503" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51366" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAAT-CGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GTTCAGGTATATAGCTGTTGGAAATGAAGCTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCCTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTCACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCCAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACCGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATAAGGGTCTCAACTTGAACAGAGAGCAACCCTTCGCGTCCT-TATAGTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693784" ref_strand="+" ref_description="SGN-E693784 [LH_Ea02D14](-)">
      <seq>agttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacaagcttatataatgtgattgaataccctaattagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51093" stop="52506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51393" g_stop="52195" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="825" polyA_stop="837"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693784" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51393" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>AGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACAAGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696429" ref_strand="+" ref_description="SGN-E696429 [LH_Ea09B19](-)">
      <seq>agttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacaggcttatataatgtgatgaataaccaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51093" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51393" g_stop="52195" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="802" r_length="802" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="816" polyA_stop="835"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696429" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51393" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>AGTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACAGGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696157" ref_strand="+" ref_description="SGN-E696157 [LH_Ea08G11](-)">
      <seq>gttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagtagaatgattgaatcgttgctcaactgaacagaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51094" stop="52454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51394" g_stop="52150" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="755" r_length="755" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="773"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696157" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51394" e_stop="52150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGA</genome_strand>
        <mrna_strand>GTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTAGAATGATTGAATCGTTGCTCAAC-TGAACAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692317" ref_strand="+" ref_description="SGN-E692317 [LH_Ea08G11]">
      <seq>tttagtccattaaatggtaacgcgcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51095" stop="52454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51394" g_stop="52150" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="756" r_length="756" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="757" polyA_stop="767"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692317" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51394" e_stop="52150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGA</genome_strand>
        <mrna_strand>TTTAGTCCATTAAATGGTAACGCGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689641" ref_strand="+" ref_description="SGN-E689641 [LH_Ea01G23]">
      <seq>tgcagtatgtacctttcgtgatcaatgcaatgagaaaccttcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaatttagtacttgaagtcgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51117" stop="52575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51416" g_stop="52195" g_length="780"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="779" r_length="779" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="816" polyA_stop="827"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E689641" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>780</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51416" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>TGCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACCTTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692118" ref_strand="+" ref_description="SGN-E692118 [LH_Ea07O04]">
      <seq>ccggtattaggttattcaatcacattatataagcatgtaggatgagtacatatcacgcgaagggttgctctctgttcaagttgagcaacgattcaattattcaactacatattataagaagaaaagatcgacaactcttattccgtagcatagtctagctagttgaaactgattgggtattttggctgcctgtttggtgtaaacagtccaaaatgtttctcaatttcagggctcttgagattttcatcaaacaacgcgaaaatgtaagcctcaataggctttgatggtcttttcggactccctcttttcacatgtctaatcaagttgttgttgtaagtcctcgcgttgtcaatagaggtcaattgccctgctccagctgaaggccaaccgctctctgatacaacgatatccaaagatgaaccaccggctttttcaagggccgagtatgtagcatctaagagtgcatcaaataagttgcggtattctcttccattatcattcacaacaactccaggggatgtaaacaacgcgtagtcaagcttaatagcttgattgtttgctattgcaaagtatggatatatgttgacaagtaaaggtgagcggttagctactaagaatctaatgatgggatcaacataccctcggacgttgtctttaaacttgcctcttgatggagggtaagtatctgtagtaagttcggtttcaatagcagtagaaactttgatctggtttcctagaccagcaccagaaatcgcgttctgaatgtttctcattgcattgatcacgaaaggtacatactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="52504" stop="51117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52218" g_stop="51417" g_length="802"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="801" r_length="801" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E692118" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52218" e_stop="51417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGTTAGTAGAAATAATTGCCTTATATAAGCATGTAGGATGAGTACATATCATGCGAAGGGTTGCTCTGTTTTCAAGTTGAGCAACGATTCGATTATTCAACTACATATTATAAGAAGAAAAGATCGACTAACTCTTATTCCGTAGCATAGTCTAGCTAGTTGAAACTGATTGGGTATTTTGGCTGCCTGTTTGGTGTAAACAGTCCAAAATGTTTCTCAATTTCAGGGCTCTTGAGATTTTCATTAAACAAGGCGAAAATGTAAGCCTCAATAGGCTTTGATGGTCTTTTCGGACTCCCTCTTTTCACATGTCTAATCAAGTTGTTGTTGTAAGTCCTCGCGTTGTCAATAGAGGTCAATTGCCCTGCTCCAGCTGAAGGCCAACCGCTCTCTGATACAACGATATCCAAAGATGAACCACCGGCTTTTTCAAGGGCCGAGTATGTAGCATCTAAGAGTGCATCAAATAAGTTGCGGTATTCTCTTCCATTATCATTCACAACAACTCCAGGGGATGTAAACAACGCGTAGTCAAGCTTAATAGCTTGATTGTTTGCTATTGCAAAGTATGGATATATGTTGACAAGTAAAGGTGAGCGGTTAGCTACTAAGAATCTAATGATGGGATCAACATACCCTCGGACGTTGTCTTTAAACTTGCCTCTTGATGGAGGGTAAGTATCTGTAGTAAGTTCGGTTTCAATAGCAGTAGAAACTTTGATCTGGTTTCCTAGACCAGCGCCAGAAATCGCGTTCTGAATGTTTCTCATTGCATTGATCACGAAAGGCACATACTGC</genome_strand>
        <mrna_strand>CCGGTATTAGGTTATTCAATCACATTATATAAGCATGTAGGATGAGTACATATCACGCGAAGGGTTGCTCTCTGTTCAAGTTGAGCAACGATTCAATTATTCAACTACATATTATAAGAAGAAAAGATCGAC-AACTCTTATTCCGTAGCATAGTCTAGCTAGTTGAAACTGATTGGGTATTTTGGCTGCCTGTTTGGTGTAAACAGTCCAAAATGTTTCTCAATTTCAGGGCTCTTGAGATTTTCATCAAACAACGCGAAAATGTAAGCCTCAATAGGCTTTGATGGTCTTTTCGGACTCCCTCTTTTCACATGTCTAATCAAGTTGTTGTTGTAAGTCCTCGCGTTGTCAATAGAGGTCAATTGCCCTGCTCCAGCTGAAGGCCAACCGCTCTCTGATACAACGATATCCAAAGATGAACCACCGGCTTTTTCAAGGGCCGAGTATGTAGCATCTAAGAGTGCATCAAATAAGTTGCGGTATTCTCTTCCATTATCATTCACAACAACTCCAGGGGATGTAAACAACGCGTAGTCAAGCTTAATAGCTTGATTGTTTGCTATTGCAAAGTATGGATATATGTTGACAAGTAAAGGTGAGCGGTTAGCTACTAAGAATCTAATGATGGGATCAACATACCCTCGGACGTTGTCTTTAAACTTGCCTCTTGATGGAGGGTAAGTATCTGTAGTAAGTTCGGTTTCAATAGCAGTAGAAACTTTGATCTGGTTTCCTAGACCAGCACCAGAAATCGCGTTCTGAATGTTTCTCATTGCATTGATCACGAAAGGTACATACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694056" ref_strand="+" ref_description="SGN-E694056 [LH_Ea02O22](-)">
      <seq>gcagtatgtacctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgctaatgtaatgtgattgaataacctaattagtactgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51117" stop="52568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="52195" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="778" r_length="778" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="805" polyA_stop="818"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E694056" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GCAGTATGTACCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTAATGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376490" ref_strand="+" ref_description="SGN-E376490 [TUS-17-N11]">
      <seq>gcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtgtaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51117" stop="52321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="52021" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E376490" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="52021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACAC</genome_strand>
        <mrna_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTGTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209317" ref_strand="+" ref_description="SGN-E209317 [cLEC-53-D20]">
      <seq>gcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgacaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttggttacattccctggagtttgtgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51117" stop="52092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="51792" g_length="376"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E209317" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="51792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCC</genome_strand>
        <mrna_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGACAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGGTTACATTCCCTGGAGTTTGTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208165" ref_strand="+" ref_description="SGN-E208165 [cLEC-37-G1]">
      <seq>gcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51117" stop="52074"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51417" g_stop="51774" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E208165" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51417" e_stop="51774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATAC</genome_strand>
        <mrna_strand>GCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203853" ref_strand="+" ref_description="SGN-E203853 [cLEC-17-A6]">
      <seq>agtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51119" stop="52212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51419" g_stop="51912" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E203853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51419" e_stop="51912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</genome_strand>
        <mrna_strand>AGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203710" ref_strand="+" ref_description="SGN-E203710 [cLEC-17-A5]">
      <seq>agtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51119" stop="52075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51419" g_stop="51775" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E203710" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51419" e_stop="51775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACT</genome_strand>
        <mrna_strand>AGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690183" ref_strand="+" ref_description="SGN-E690183 [LH_Ea02N13]">
      <seq>cggttcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaattagtacttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51132" stop="52568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51432" g_stop="52195" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="762" r_length="762" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="799"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E690183" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51432" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CG-GTTCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693481" ref_strand="+" ref_description="SGN-E693481 [LH_Ea01G23](-)">
      <seq>tgatcaatgcaatgagaaacattcagatcgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctatggaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgagtacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgatacatactcggccctctgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagttggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactaggtagactatgctacggaataagagttgtggatcttttcttcttataatatgtagttgaataattgaatcgttgctcaccttgaacagagagcaaccatgggcgtgatatgtactcatccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51134" stop="52481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51434" g_stop="52181" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693481" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51434" e_stop="52181"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCT-TGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTA</genome_strand>
        <mrna_strand>TGATCAATGCAATGAGAAACATTCAGATCGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATGGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGAGTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGATACATACTCGGCCCTCTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGTTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGGTAGACTATGCTACGGAATAAGAGTT-GTGGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCACCTTGAACAGAGAGCAACCATGGGCGTGATATGTACTCATCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694023" ref_strand="+" ref_description="SGN-E694023 [LH_Ea02N13](-)">
      <seq>gatcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaattagtactgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51135" stop="52568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51435" g_stop="52195" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="760" r_length="760" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="787" polyA_stop="803"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E694023" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51435" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697120" ref_strand="+" ref_description="SGN-E697120 [LH_Ea10O14](-)">
      <seq>atcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcatagatgcttatataatgtgatgaataacctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51136" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51436" g_stop="52195" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="774" polyA_stop="790"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E697120" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51436" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCATAGATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695958" ref_strand="+" ref_description="SGN-E695958 [LH_Ea07O04](-)">
      <seq>atcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcatacatgcttatataatgtgattgaataacctaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51136" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51436" g_stop="52195" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E695958" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51436" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCATACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696649" ref_strand="+" ref_description="SGN-E696649 [LH_Ea09K23](-)">
      <seq>atcaatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataaggtgattgaataacctaattagtactgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51136" stop="52568"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51436" g_stop="52195" g_length="760"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="786" polyA_stop="804"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696649" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51436" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>ATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694190" ref_strand="+" ref_description="SGN-E694190 [LH_Ea03E12](-)">
      <seq>caatgcaatgagaaacattcagaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcaaccgacatgcttatataatgtgatgaataacctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51138" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51438" g_stop="52195" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="772" polyA_stop="787"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E694190" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51438" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CAATGCAATGAGAAACATTCAGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCAACCGACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289034" ref_strand="+" ref_description="SGN-E289034 [cLES-17-L12]">
      <seq>aacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51151" stop="52212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51451" g_stop="51912" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E289034" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51451" e_stop="51912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</genome_strand>
        <mrna_strand>AACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693122" ref_strand="+" ref_description="SGN-E693122 [LH_Ea10H24]">
      <seq>catatcgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtgtaaagacaacgtccgagggtatgttgatgccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggcggttcatctttggatatcgttgtatcagagagcggttggccttctgctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacgttttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaagcattttggactgtttacaccaaacaggcagccaaaatacccaatcaggttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgataaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51157" stop="52468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51457" g_stop="52169" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="713" polyA_stop="723"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693122" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51457" e_stop="52169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATAT</genome_strand>
        <mrna_strand>CATATCGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTGTAAAGACAACGTCCGAGGGTATGTTGATGCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGCGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCTGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACGTTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAGCATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGGTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696962" ref_strand="+" ref_description="SGN-E696962 [LH_Ea10H24](-)">
      <seq>agaacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51158" stop="52468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51458" g_stop="52169" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="712" polyA_stop="727"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696962" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51458" e_stop="52169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATAT</genome_strand>
        <mrna_strand>AGAACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697074" ref_strand="+" ref_description="SGN-E697074 [LH_Ea10M16](-)">
      <seq>aacgcgatttctggtgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacaaacggatataatgtgattgaataacctaattagtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51160" stop="52562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51460" g_stop="52184" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="758" polyA_stop="773"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E697074" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51460" e_stop="52184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACAT</genome_strand>
        <mrna_strand>AACGCGATTTCTGGTGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349816" ref_strand="+" ref_description="SGN-E349816 [cTOS-3-G19]">
      <seq>aaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctactaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttagtcgatcttttcttcttataatatgtagttgaataatcgaatcgttgctcaacttgaaaacagagcaacccttcgcatgatatgtactcatnctacatgcctatataaggcaattatttctactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51196" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51496" g_stop="52217" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E349816" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51496" e_stop="52217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACTAACTCAG</genome_strand>
        <mrna_strand>AAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTACTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATNCTACATGCCTATATAAGGCAATTATTTCTACTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696227" ref_strand="+" ref_description="SGN-E696227 [LH_Ea08J09](-)">
      <seq>ctattgaaaccgaacttactccagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtacgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatacttcgcaatagcaaacaatcaagctattcagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaattccgccacttatttgaagcactcttagatgctgcatactcggccctctgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51209" stop="52158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51509" g_stop="51858" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696227" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51509" e_stop="51858"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCT-TGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTG</genome_strand>
        <mrna_strand>CTATTGAAACCGAACTTACTCCAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTACGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTCGCAATAGCAAACAATCAAGCTATTCAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATTCCGCCACTTATTTGAAGCACTCTTAGATGCTGCATACTCGGCCCTCTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352641" ref_strand="+" ref_description="SGN-E352641 [cTOS-11-G5]">
      <seq>tgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttagtcgatcttttcttcttataatatgtagttgaataatcgaatcgttgctcaacttgaaaacagagcaacccttcgcatgatatgtactcatcctacatgcttatataaggcaatatttctactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51213" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51513" g_stop="52195" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="683" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="698" polyA_stop="707"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E352641" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51513" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>TGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689514" ref_strand="-" ref_description="SGN-E689514 [LH_Ea01B16]">
      <seq>caagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaattccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacccccccaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacaggattagtacttgaagtcgtcattgaaaaaaaaaaaaaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51248" stop="52583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51548" g_stop="52195" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="687" polyA_stop="701"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E689514" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689514" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51548" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATTCCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACCCCCCCAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286587" ref_strand="+" ref_description="SGN-E286587 [cLES-12-M21]">
      <seq>aagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51256" stop="52371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51556" g_stop="52071" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E286587" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51556" e_stop="52071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCT</genome_strand>
        <mrna_strand>AAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E407558" ref_strand="+" ref_description="SGN-E407558 [PPI-7-B20]">
      <seq>tttaaagacaacgtccgaggatatgttgatcccatcatcagattcttagtagctaaccgttcacctttacttgtcaacatatatccttactttgcaaaagcaaacaatcaagctattcagcttgactacgcgctgtttacatcccctggagttgttgtaaatgataatggaagagaataccggaacttatttgatgcactcttagatgctacatactcagcccttgaaaaagccggtggctcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacgtccattgacaacgcaaggacttacaacaacaacttgattagacatgtgaaaggagggagtccgaaaagaccatcaaaaccaattgaagcttacatttttgcgctgttgaatgaagatctgaagagccctgaaattgagaaacattttggactgtttacaccaagcaggcagccaaaatacgcgatcagtttcaactagctagactatgctagataattaacggaataagagttgntgatcttctctctttataatatgtagttgaataatcgaatcgttgctcaacttgaacagagagcaacccttcgcgtgataactgatgtgtactcatcctacatgcttatataaagcaattatctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51259" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51559" g_stop="52169" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="663" polyA_stop="673"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E407558" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51559" e_stop="52169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGC--------T-ACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATAT</genome_strand>
        <mrna_strand>TTTAAAGACAACGTCCGAGGATATGTTGATCCCATCATCAGATTCTTAGTAGCTAACCGTTCACCTTTACTTGTCAACATATATCCTTACTTTGCAAAAGCAAACAATCAAGCTATTCAGCTTGACTACGCGCTGTTTACATCCCCTGGAGTTGTTGTAAATGATAATGGAAGAGAATACCGGAACTTATTTGATGCACTCTTAGATGCTACATACTCAGCCCTTGAAAAAGCCGGTGGCTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACGTCCATTGACAACGCAAGGACTTACAACAACAACTTGATTAGACATGTGAAAGGAGGGAGTCCGAAAAGACCATCAAAACCAATTGAAGCTTACATTTTTGCGCTGTTGAATGAAGATCTGAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAGCAGGCAGCCAAAATACGCGATCAGTTTCAACTAGCTAGACTATGCTAGATAATTAACGGAATAAGAGTT-GNTGATCTTCTCTCTTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376489" ref_strand="+" ref_description="SGN-E376489 [TUS-17-N11](-)">
      <seq>ccaagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttagtcgatcttttcttcttataatatgtagttgaataatcgaatcgttgctcaacttgaaaacagagcaacccttcgcatgatatgtactcatcctacatgcttatataaggcaattatttctactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51273" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51573" g_stop="52217" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E376489" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376489" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51573" e_stop="52217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACTAACTCAG</genome_strand>
        <mrna_strand>CCAAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692050" ref_strand="+" ref_description="SGN-E692050 [LH_Ea07L08]">
      <seq>ccttttagatcccatcattagattcttagtagctaaccgctcccctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcgggtggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaggagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51282" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51580" g_stop="52195" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="646"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692050" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51580" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGTT-GATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CCTTTTAGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCCCCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGGTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAGGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695890" ref_strand="+" ref_description="SGN-E695890 [LH_Ea07L08](-)">
      <seq>gttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacaggcttatataatgtgatgaataccctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51283" stop="52506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51583" g_stop="52195" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="627" polyA_stop="646"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E695890" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51583" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACAGGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E695948" ref_strand="+" ref_description="SGN-E695948 [LH_Ea07N18](-)">
      <seq>gctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtaatggaataacctaattagtactgaagtcgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51310" stop="52575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51610" g_stop="52195" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="636"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E695948" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E695948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51610" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>GCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692108" ref_strand="+" ref_description="SGN-E692108 [LH_Ea07N18]">
      <seq>ccgtataagggcgctccctttacttgtcaacatatatccataccttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttggatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaattagtacttgaagtcgtcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51316" stop="52575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51616" g_stop="52195" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="589" r_length="578" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="635"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692108" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51616" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CGCTC-CCTTTACTTGTCAACATATATCCATACCTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGGATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689817" ref_strand="+" ref_description="SGN-E689817 [LH_Ea01O07]">
      <seq>tctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaattagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51404" stop="52562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51703" g_stop="52195" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="524"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E689817" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51703" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>TCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693657" ref_strand="+" ref_description="SGN-E693657 [LH_Ea01O07](-)">
      <seq>ctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgtcgcctcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctactgaggcttacattttcgcgttgtttgacgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagtcgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaagagagagcaacccttcgcgtgatatgtactcatcctccaagggtatataatgtgattgaataccctaattagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51404" stop="52506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51704" g_stop="52195" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="526"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693657" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51704" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTCGCCTCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTACTGAGGCTTACATTTTCGCGTTGTTTGACGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAG-TCGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAAGAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTCCAAGGGTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E692930" ref_strand="+" ref_description="SGN-E692930 [LH_Ea09P24]">
      <seq>ccgttaaagccggtggttcatctttggatatcgttgtatcacagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51487" stop="52504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51782" g_stop="52195" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="436"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E692930" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E692930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51782" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>CCGTTAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCACAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696770" ref_strand="+" ref_description="SGN-E696770 [LH_Ea09P24](-)">
      <seq>aaaagccggtggttcatctttggatatccccgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcaacggacatgcttatataatgtgatgataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51486" stop="52503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51786" g_stop="52195" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="416" polyA_stop="434"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E696770" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E696770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51786" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>AAAAGCCGGTGGTTCATCTTTGGATATCCCCGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCAACGGACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E234813" ref_strand="+" ref_description="SGN-E234813 [cLEL-6-G11](-)">
      <seq>aacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgccttgtttaatgaaaatctcaaaagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttagtcgatcttttcttcttataatatgtagttgaataatcgaatcgttgctcaacttgaaaacagagcaacccttcgcatgatatgtactcatcctacatgcttatataaggcaattatttctcctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51586" stop="52512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51886" g_stop="52195" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="326" polyA_stop="344"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E234813" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51886" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>AACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAAAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693943" ref_strand="+" ref_description="SGN-E693943 [LH_Ea02K05](-)">
      <seq>acaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctggaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagaaagcaacccttcgcgtgatatgtactcatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="51587" stop="52480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51887" g_stop="52180" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="293" r_length="293" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E693943" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51887" e_stop="52180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCT</genome_strand>
        <mrna_strand>ACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGGAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAAAGCAACCCTTCGCGTGATATGTACTCATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573415" ref_strand="+" ref_description="SGN-E573415 [32723]">
      <seq>gatgacgtaccaagtcaaatgaagaccttgtgcaattagctgaaagcgccaaagcggttgatgccctcaaagacgttagatacaaggctgaagaagctaagctgattacggaactagcaggaatggattctatcaactatgactttttaaagcaggcgtatacagcttgtgtcagtgtgaataagacattagataagtatgaaatgtccaagcttcttagggagccatatgatatggagggagcatgtgtgaccattgaatctggaaacgagggcatttactcgcagatttgggcagaaaaactcacaagaatgtatatcaaatgggcagaaaaacaaggtcataaggcgaggatagttgagaaacaaaattcagagagtggtggtatcaaatatgtgatgattgagttagaattcaagtcagcatacggctatctttcaggagaaagaggaatccattgcatgaatggaagttctgaaggtaaatttgatctttcaaaggatggagctgctgcgatcaatgttattcctctttttcttgaatcatcccctgacctccaaattgatgaaaacgatctagcaaattacaacatccgtatgacagaggaacagggcaggacttcaacttcactcaccattcagacacatcccaacaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="61950" stop="58955"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61650" g_stop="61564" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.734" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61437" g_stop="61237" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="287" r_length="201" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61236" i_stop="60595" i_length="642">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="60594" g_stop="60382" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="500" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="60381" i_stop="59392" i_length="990">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59391" g_stop="59238" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="658" r_length="158" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E573415" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61650" e_stop="61564"/>
          <exon e_start="61437" e_stop="61237"/>
          <exon e_start="60594" e_stop="60382"/>
          <exon e_start="59391" e_stop="59238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAGGTGTCATGCAAGATAACTTTAAAGCTAATTCTCACTTGTCAGCATATGTTTATTGCCTAGTTATTTAAGACTTAAAACGGAAAACCATCAAACTCAAATTCTATTGCATTGAGTGTGATTCTGCAGGCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAGGTATTCACCTGTGATCTCTTGCTATAATCCCGCATGTACTTGCTGAGTCAATAGTAAAGGTCCATATGCATCTCAGGTGAAAAAGGAGGCCAGTAAGTGTTCTGAAATATAAACGTGCTATTAGCTAGGTATAAGAAGTGGAACTTTCATGATGAGTTCCCTGCATTTGAAGTTGCAAGGAGGGAAGGGGGTTATAATTGTATTATCAGTGCCCTTGCTCCTTATTACTGTTGCTTATATACTCATCTCAACCATAAAGTTAATAGTCTATCTGCACCATAGATTCTTCTCCCTAGAAGATTCAAACTTGTACTGTGAGAAACTTATTTTACATGGAAATGATTCTGAACTTCCAATTTTTTGTTCTTTTATGGAAAACATCGAATTTCAGAGAGGAGGTGGTAGTTTGTAGACCTGATGCCTGATAAGGATTTATAGTTGAGATTAGAAAGTAGGTATACTAGCCTTCTGCTCCTAGCAATTCGTCTTCAAGCTGCTCATGAGCATCTATTTATTCTACTTATTCAAAATCGAAGAGATGGTTTTTCTTCAAGCTGATGTAGTTTTATTTCCTTAGAAATTTCATTCTAGGCAAGACTATGGTACTGTTTCTCAATGATAGACTTATCCACTTTGATCCAGATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTTAGAATTTAAGTCAGCATATGGCTATCTTTCAGGGGAAAGAGGAATCCATTGCATGAATGGAAGTTCTGAAGGTAAATTTGATCTTTCAAAGGTATGAATTAGAGGACTCTTAGCTCAAATTTAGTTCTCCCCTGTCGCTATCAGTTGATTATGTGGAATTATAATATTCCAATAGTTTCCTATTTCCTACTATCCTTTGAGTTATGTGTTCTATGAGAGTCATTTGACATATTCTTGTTGGCCTTTTAAGAGGAGAACATTTTTCATGTGTTGTCTTAAATCTCAGTATTCTGATGCATTCTGCTTAAGAGTTTAGTTTATCTGAAGTGAATAAATCACAACCGCTGACCGTTAGTTCAAAAATTCTCTGTAATCTATTTCAGGTCATAAAATGTGATTACTACCTAGTAATGTTATGAAGGAAACTTGATTATCCAACATTTAACTGAAAAGGAGAAAATATAATATAGTTATCATGGTGCGGTATTTTTGCATAGATAAAATAAAGTACAACAAGTTTTGAGTGGAAGTATTATAAAAATTGATGATTTATGAAACAAGCTAAAATTTACCATGCTTCGATGCAGTTCAATAGTCAGTGGAATAAGGGGTGACTTATGAGTTAACAATAGTCAGTACTCAGTAGAATAAGGAGTAAAAACAATCATATGACGCAAAGTACAGTGATCTCATCCTATTACCAAACTTGCACTAAGATAAAACGACCCCCTTTCATTTTCCAAGAACGTGGAATTCAAATCACTCGGTCATCGATTTTCATGATGAGGTATTGCTTTTGCGAAGAAAGAGTTCCTTATGTGATGATGTCACAGAGACTTTATATGTCAGGAAAGAGGGGAACTTTAAAATGAATACTGAAATTCCTTTAAACTATTGGGAAGACAAAAACTTTAAACTTTTGAAGTAGTAGCTGACTAATGAAGGATGATGTTCGATACATGTTTGTCGAGCAATCATTATGTACCTTACATTAACACAACGGTCTATATGGCCGCTTGTATCCTCTTAGATGTTAATCAAAATGATAAAATTTACAGATTAATCTTAATGGATTGTGCAGGATGGAGCTGCTGCAATCGATGTTATTCCTCTTTTTCTTGAATCATCCCCTGACCTCCAAATTGATGAAAACGATCTAG-AAATTACAACAT-CGTATGA-AGAGGAACGGGGTAGGACTTCCCCTTCACTCATTATTCA-TCATATACCAACAGGAT</genome_strand>
        <mrna_strand>GATGACGTA-CCAAGTCAAATGAAGACCTTGTGCAATTAGCTGAAAGCGCCAAAGCGGTTGATGCCCTCAAAGACGTTAGATACAAG..............................................................................................................................GCTGAAGAAGCTAAGCTGATTACGGAACTAGCAGGAATGGATTCTATCAACTATGACTTTTTAAAGCAGGCGTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTGACCATTGAATCTGGAAACGAGGGCATTTACTCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAAATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTTAGAATTCAAGTCAGCATACGGCTATCTTTCAGGAGAAAGAGGAATCCATTGCATGAATGGAAGTTCTGAAGGTAAATTTGATCTTTCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGCTGCTGCGATCAATGTTATTCCTCTTTTTCTTGAATCATCCCCTGACCTCCAAATTGATGAAAACGATCTAGCAAATTACAACATCCGTATGACAGAGGAACAGGGCAGGACTTCAACTTCACTCACCATTCAGACACATCCCAACAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480769" ref_strand="+" ref_description="SGN-E480769 [cSTD-15-A20]">
      <seq>gaaccttcgaagctcaaagacagctacttttcgaattcgagctcataataatcagcacatcgatgacaagaacagattctacaaagagcttggcacatttgctttgaaaaggaagattgaagatttggtactccgtgctgaaatgttggcaccaacagcactagaatttgaagaagcaagacgcctcaagcaggaagaaattattcgtgaatatgatttgtgggatgacgtagccaagtcaaatgaagaccttgtgcaattagctgaaagcgccaaagcggttgatgccctcaaagaccttagatacaaggctgaagaagctaagctgattacggaactagcaggaatggattctatcaactatgactttttaaagcaggcgtatacagcttgtgtcagtgtgaataagacattagataagtatgaaatgtccaaacttctcagggagccatatgatatggagggagcatgtgtgaccattgaatctggaaacgagggcatttactcgcagatttgggcagaaaaactcacaagaatgtatatcaaatgggcagaaaaacaaggtcataaggcgaggatagttgagaaacaagattcagagagtggtggtatcaaatatgtgatgattgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="62736" stop="60173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62436" g_stop="62345" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61781" g_stop="61564" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="310" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.734" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61437" g_stop="61237" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="511" r_length="201" r_score="0.955"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61236" i_stop="60595" i_length="642">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60594" g_stop="60473" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="633" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E480769" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62436" e_stop="62345"/>
          <exon e_start="61781" e_stop="61564"/>
          <exon e_start="61437" e_stop="61237"/>
          <exon e_start="60594" e_stop="60473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTGGTTTGTTTCTTCTCTTCTCTGCTTGTGTTCTTGTTTTAGACATAAAGTAAATCTAACAAACAAAAAAAAGAAGTTAACATTTTTAGTAGTTTTTAAGTTTGAGTTAATGGTTAAAAACACTCCTGAAGTCTGAACTATCACTTTTTCGTAGTTCAGCTATTTATTGTTCTATTTAGCTTTGCGAGTTTCATGCCTCAATTATCACTCCTGTTTGTATTAAAACACACTTAAGATGCAGAGTTGGTCTAAGTGTGTTTGTTGTCACTTGGGAATAAATATTTGGCCAATTCAACATCAAGGTTTGTTTCAATACAAAGAGATTTATAATGCGTGTATCCTTAGAAACAATAATAGGTAATATAATTGAAGAAGAAGATGGCCATATACATAAAAGTCGTGTTCTTTCATGAACAAATGACTTTTCATAACAGTCATGTTCTTTCACAAACAGATGTGTTTATTCAATTTAAGACCTCTATATATTACAAAAATCAAAATATCCAACATGTATAGTAAGTACTAATCTGTTAATTGTTGATGGTATTGATGATTTCATAATGTAGGAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAGGTGTCATGCAAGATAACTTTAAAGCTAATTCTCACTTGTCAGCATATGTTTATTGCCTAGTTATTTAAGACTTAAAACGGAAAACCATCAAACTCAAATTCTATTGCATTGAGTGTGATTCTGCAGGCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAGGTATTCACCTGTGATCTCTTGCTATAATCCCGCATGTACTTGCTGAGTCAATAGTAAAGGTCCATATGCATCTCAGGTGAAAAAGGAGGCCAGTAAGTGTTCTGAAATATAAACGTGCTATTAGCTAGGTATAAGAAGTGGAACTTTCATGATGAGTTCCCTGCATTTGAAGTTGCAAGGAGGGAAGGGGGTTATAATTGTATTATCAGTGCCCTTGCTCCTTATTACTGTTGCTTATATACTCATCTCAACCATAAAGTTAATAGTCTATCTGCACCATAGATTCTTCTCCCTAGAAGATTCAAACTTGTACTGTGAGAAACTTATTTTACATGGAAATGATTCTGAACTTCCAATTTTTTGTTCTTTTATGGAAAACATCGAATTTCAGAGAGGAGGTGGTAGTTTGTAGACCTGATGCCTGATAAGGATTTATAGTTGAGATTAGAAAGTAGGTATACTAGCCTTCTGCTCCTAGCAATTCGTCTTCAAGCTGCTCATGAGCATCTATTTATTCTACTTATTCAAAATCGAAGAGATGGTTTTTCTTCAAGCTGATGTAGTTTTATTTCCTTAGAAATTTCATTCTAGGCAAGACTATGGTACTGTTTCTCAATGATAGACTTATCCACTTTGATCCAGATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTT</genome_strand>
        <mrna_strand>GAACCTTCGAAGCTCAAAGACAGCTACTTTTCGAATTCGAGCTCATAATAATCAGCACATCGATGACAAGAACAGATTCTACAAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTGGCACCAACAGCACTAGAATTTGAAGAAGCAAGACGCCTCAAGCAGGAAGAAATTATTCGTGAATATGATTTGTGGGATGACGTAGCCAAGTCAAATGAAGACCTTGTGCAATTAGCTGAAAGCGCCAAAGCGGTTGATGCCCTCAAAGACCTTAGATACAAG..............................................................................................................................GCTGAAGAAGCTAAGCTGATTACGGAACTAGCAGGAATGGATTCTATCAACTATGACTTTTTAAAGCAGGCGTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAACTTCTCAGGGAGCCATATGATATGGAGGGAGCATGTGTGACCATTGAATCTGGAAACGAGGGCATTTACTCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E473707" ref_strand="+" ref_description="SGN-E473707 [cSTB-33-I18]">
      <seq>ccaaagcccgtgttcttcgcggcggccggaaaatcaagaaacattttatccaccaccagtctactaccagtatggctaaaatggctgctgactctttttctgtacggacagaagctacttgttcgtcttctccattgaaccttcgaagctcaaagagagcttcttttcgaattcgagctcataataatcaacacaccgatgacaagaacagattctacaaagagcttggcacatttgctttgaaaaggaagattgaagatttggtactccgtgctgaaatgttggcaccaacagcactagaatttgaagaagcaagacgcctcaagcaggaagaaattattcgtgaatatgatttgtgggatgacgtagccaagtcaaatgaagaccttgtgcaattagctgaaagcgccaaagcggttgatgccctcaaagaccttagatacaaagctgaagaagctaagctgattacggaactagcaggaatggattctatcaactatgactttttaaagcaggcgtatacagcttgtgtcagtgtgaataagacattagataagtatgaaatgtccaagcttcttatggagccatatgatatggagggagcatgtgtgaccattgaatctggaaacgagggcatttactcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="62872" stop="60940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62572" g_stop="62345" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61781" g_stop="61564" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="446" r_length="218" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.734" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61437" g_stop="61239" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="645" r_length="199" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E473707" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62572" e_stop="62345"/>
          <exon e_start="61781" e_stop="61564"/>
          <exon e_start="61437" e_stop="61239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTGGTTTGTTTCTTCTCTTCTCTGCTTGTGTTCTTGTTTTAGACATAAAGTAAATCTAACAAACAAAAAAAAGAAGTTAACATTTTTAGTAGTTTTTAAGTTTGAGTTAATGGTTAAAAACACTCCTGAAGTCTGAACTATCACTTTTTCGTAGTTCAGCTATTTATTGTTCTATTTAGCTTTGCGAGTTTCATGCCTCAATTATCACTCCTGTTTGTATTAAAACACACTTAAGATGCAGAGTTGGTCTAAGTGTGTTTGTTGTCACTTGGGAATAAATATTTGGCCAATTCAACATCAAGGTTTGTTTCAATACAAAGAGATTTATAATGCGTGTATCCTTAGAAACAATAATAGGTAATATAATTGAAGAAGAAGATGGCCATATACATAAAAGTCGTGTTCTTTCATGAACAAATGACTTTTCATAACAGTCATGTTCTTTCACAAACAGATGTGTTTATTCAATTTAAGACCTCTATATATTACAAAAATCAAAATATCCAACATGTATAGTAAGTACTAATCTGTTAATTGTTGATGGTATTGATGATTTCATAATGTAGGAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAGGTGTCATGCAAGATAACTTTAAAGCTAATTCTCACTTGTCAGCATATGTTTATTGCCTAGTTATTTAAGACTTAAAACGGAAAACCATCAAACTCAAATTCTATTGCATTGAGTGTGATTCTGCAGGCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGA</genome_strand>
        <mrna_strand>CCAAAGCCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCTGCTGACTCTTTTTCTGTACGGACAGAAGCTACTTGTTCGTCTTCTCCATTGAACCTTCGAAGCTCAAAGAGAGCTTCTTTTCGAATTCGAGCTCATAATAATCAACACACCGATGACAAGAACAGATTCTACAAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTGGCACCAACAGCACTAGAATTTGAAGAAGCAAGACGCCTCAAGCAGGAAGAAATTATTCGTGAATATGATTTGTGGGATGACGTAGCCAAGTCAAATGAAGACCTTGTGCAATTAGCTGAAAGCGCCAAAGCGGTTGATGCCCTCAAAGACCTTAGATACAAA..............................................................................................................................GCTGAAGAAGCTAAGCTGATTACGGAACTAGCAGGAATGGATTCTATCAACTATGACTTTTTAAAGCAGGCGTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTATGGAGCCATATGATATGGAGGGAGCATGTGTGACCATTGAATCTGGAAACGAGGGCATTTACTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472668" ref_strand="+" ref_description="SGN-E472668 [cSTB-29-D13]">
      <seq>atttcccaaagcccgtgttcttcgcggcggccggaaaatcaagaaacattttatccaccaccagtctactaccagtatggctaaaatggctgctgaccctttttctgtacggacagaagctacttgttcgtcttctccattgaaccttcgaagctcaaagacagctacttttcgaattcgagctcataataatcagcacatcgatgacaagaacagattctacaaagagcttggcacatttgctttgaaaaggaagattgaagatttggtactccgtgctgaaatgttggcaccaacagcactagaatttgaagaagcaagacgcctcaagcaggaagaaattattcgtgaatatgatttgtgggatgacgtagccaagtcaaatgaagaccttgtgcaattagctgaaagcgccaaagcggttgatgccctcaaagaccttagatacaaggctgaagaagctaagctgattacggaactagcaggaatggattctatcaactatgactttttaaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="62877" stop="61070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62577" g_stop="62345" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61781" g_stop="61564" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="451" r_length="218" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.734" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61437" g_stop="61370" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="519" r_length="68" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E472668" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62577" e_stop="62345"/>
          <exon e_start="61781" e_stop="61564"/>
          <exon e_start="61437" e_stop="61370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTGGTTTGTTTCTTCTCTTCTCTGCTTGTGTTCTTGTTTTAGACATAAAGTAAATCTAACAAACAAAAAAAAGAAGTTAACATTTTTAGTAGTTTTTAAGTTTGAGTTAATGGTTAAAAACACTCCTGAAGTCTGAACTATCACTTTTTCGTAGTTCAGCTATTTATTGTTCTATTTAGCTTTGCGAGTTTCATGCCTCAATTATCACTCCTGTTTGTATTAAAACACACTTAAGATGCAGAGTTGGTCTAAGTGTGTTTGTTGTCACTTGGGAATAAATATTTGGCCAATTCAACATCAAGGTTTGTTTCAATACAAAGAGATTTATAATGCGTGTATCCTTAGAAACAATAATAGGTAATATAATTGAAGAAGAAGATGGCCATATACATAAAAGTCGTGTTCTTTCATGAACAAATGACTTTTCATAACAGTCATGTTCTTTCACAAACAGATGTGTTTATTCAATTTAAGACCTCTATATATTACAAAAATCAAAATATCCAACATGTATAGTAAGTACTAATCTGTTAATTGTTGATGGTATTGATGATTTCATAATGTAGGAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAGGTGTCATGCAAGATAACTTTAAAGCTAATTCTCACTTGTCAGCATATGTTTATTGCCTAGTTATTTAAGACTTAAAACGGAAAACCATCAAACTCAAATTCTATTGCATTGAGTGTGATTCTGCAGGCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCA</genome_strand>
        <mrna_strand>ATTTCCCAAAGCCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCTGCTGACCCTTTTTCTGTACGGACAGAAGCTACTTGTTCGTCTTCTCCATTGAACCTTCGAAGCTCAAAGACAGCTACTTTTCGAATTCGAGCTCATAATAATCAGCACATCGATGACAAGAACAGATTCTACAAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTGGCACCAACAGCACTAGAATTTGAAGAAGCAAGACGCCTCAAGCAGGAAGAAATTATTCGTGAATATGATTTGTGGGATGACGTAGCCAAGTCAAATGAAGACCTTGTGCAATTAGCTGAAAGCGCCAAAGCGGTTGATGCCCTCAAAGACCTTAGATACAAG..............................................................................................................................GCTGAAGAAGCTAAGCTGATTACGGAACTAGCAGGAATGGATTCTATCAACTATGACTTTTTAAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E446162" ref_strand="+" ref_description="SGN-E446162 [cSTA-20-M17]">
      <seq>ctccatttcccaaagccgtgttcttcgcggcggccggaaaatcaagaagcattttatccaccaccagtctactaccagtatggctaaaatggctgctgaccctttttctgtacggacagaagctacttgttcgtcttctccattgaaccttcgaagctcaaagacagctacttttcgaattcgagctcataataatcagcacacagatgacaagaacagattctacaaagagcttggcacatttgctttgaaaaggaagattgaagatttggtactccgtgctgaaatgttggcaccaacagcactagaatttgaagaagcaagacgcctcaagcaggaagaaatcattcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="62881" stop="61367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62581" g_stop="62345" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61781" g_stop="61665" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="353" r_length="117" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E446162" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E446162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62581" e_stop="62345"/>
          <exon e_start="61781" e_stop="61665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTGGTTTGTTTCTTCTCTTCTCTGCTTGTGTTCTTGTTTTAGACATAAAGTAAATCTAACAAACAAAAAAAAGAAGTTAACATTTTTAGTAGTTTTTAAGTTTGAGTTAATGGTTAAAAACACTCCTGAAGTCTGAACTATCACTTTTTCGTAGTTCAGCTATTTATTGTTCTATTTAGCTTTGCGAGTTTCATGCCTCAATTATCACTCCTGTTTGTATTAAAACACACTTAAGATGCAGAGTTGGTCTAAGTGTGTTTGTTGTCACTTGGGAATAAATATTTGGCCAATTCAACATCAAGGTTTGTTTCAATACAAAGAGATTTATAATGCGTGTATCCTTAGAAACAATAATAGGTAATATAATTGAAGAAGAAGATGGCCATATACATAAAAGTCGTGTTCTTTCATGAACAAATGACTTTTCATAACAGTCATGTTCTTTCACAAACAGATGTGTTTATTCAATTTAAGACCTCTATATATTACAAAAATCAAAATATCCAACATGTATAGTAAGTACTAATCTGTTAATTGTTGATGGTATTGATGATTTCATAATGTAGGAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGG</genome_strand>
        <mrna_strand>CTCCATTT-CCCAAAGCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAGCATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCTGCTGACCCTTTTTCTGTACGGACAGAAGCTACTTGTTCGTCTTCTCCATTGAACCTTCGAAGCTCAAAGACAGCTACTTTTCGAATTCGAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTGGCACCAACAGCACTAGAATTTGAAGAAGCAAGACGCCTCAAGCAGGAAGAAATCATTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429974" ref_strand="-" ref_description="SGN-E429974 [STM-52-P4]">
      <seq>atggatatgccaaaaggagacaaacttgtgctgaggggtttaaagtttcatggttaccatggggtgaagcaagaggaaaggaagcttggtcagaagttcctggtagatgttgatgcttggatggatcttcgacctgctggtgaatctgactgcttgtccgatactctaagttatactgatatataccgaatagtgaaagaggttatggaggggtcacctaaaaatctgctagaatctgtggctcagcttatagcatcgacaaccctcaccaagtatccacaggtatctgctgttcgcgttcaagttggaaagcctcatgtggccgtccaagggcctgttgactacttgggtgtcgagatcattagatacagagatcttgatgttcaaaactagtacatgatgcttgtattattaacaacttcaattttctgctgtttgacaatcattttcaagccaatacaatttgatcaattgtctcaaactcttgatacttaattgaataatgcctttactacacacttctgcaggggcacaaagttcccagaaataaaagggcagttcgggcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="66665" stop="64708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66365" g_stop="66178" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65390" g_stop="65003" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="571" r_length="383" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E429974" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429974" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="66365" e_stop="66178"/>
          <exon e_start="65390" e_stop="65003"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAGGTGAGTGATGCTTTCGAGTTTAATCATTTTGCATTTTTGAGAGTTGAGATGAATGAACAGAACAAACTTGATTTCATAGCTTAATAAATGAAACATCTCGAACGTTTATGTAACAAGGTTCTATTGCTCAGAGGTCAGTTTTAATAATACTCTTTTCACCAGATAGAAAATATACTAGGCTTGAGCAGTTTCACCAGAGTTAAACCGGAAGAGATGAATAGAACAGTACAGACGAGACCTCAGAATTGGGTTTTAAACTTCTGTAAAAGGACTAATGATTTTATAAGTTCTCGTAGTAAGAACTTGACTCATTTGAAACATCTTCGAGAGCACACTGAAGCAGATTTTTTGATGTTATGTAGTTTCTTGGATATTCCATCATACATGGGAATTTTGATGCCACTGCTAGAGGCTCTTGTAATCTCCTACTTTCTTGAGGAAACATTGGACTATTGCCTAATTATTATTTATCTTAGAGTAGTTCACTTTGCACCTAAGGGCGGGATCTAGTGGTCTGGATCCTGATAACTCAAGTAAAATCTCTTGACAGCGTGTGGCAATAAGAAAAGCCCGAAATTCCAATAGCTTAATCAGTGATATAAGGTAACTTTCTATTGGCGCTAACTGATCTCCTGGACGGTGTTTGCTTGTAAGTTACAGTTTCTTTTCTTGTCTTACCAAATCTTAAGAATAAACATTTTCACAGATCAATTTTCTAGCTTGGTTCGTATGCTTTTTTTGGCGTGATCATTCATTGGTTCTATCTTTTAAATCTACAAATTGGCAGACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCAGTACAATTTGATCAATTGTC-ATCACTCTTGATGCTTAATTGACTTACCTTTCCTGTTGCACACTTCTGCAGTGACACAAACTTCCCAAAAATAAAAGGGCAGTTCGGTGCATGATG</genome_strand>
        <mrna_strand>ATGGATATGCCAAAAGGAGACAAACTTGTGCTGAGGGGTTTAAAGTTTCATGGTTACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGACCTGCTGGTGAATCTGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTGAAAGAGGTTATGGAGGGGTCACCTAAAAATCTGCTAGAATCTGTGGCTCAGCTTATAGCATCGACAACCCTCACCAAGTATCCACAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAGATCTTGATGTTCAAAACTAGTACA-T--GATGC-TTGTATTATTAACAACTTCAATTTTCTGCTGTTTGACAATCATTTTCAAGCCAATACAATTTGATCAATTGTCTCAAACTCTTGATACTTAATTGAATAATGCCT-TTACTACACACTTCTGCAGGGGCACAAAGTTCCCAGAAATAAAAGGGCAGTTCGG-GCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429973" ref_strand="+" ref_description="SGN-E429973 [STM-52-P4]">
      <seq>ctcattttcgagattcagaagcccagaaaacttccaatcaaaattattattcagattccggcggctttccggctgttcgccgaccataaaccagtcgtcgtaaaacccagctcgggtcacatggatatgccaaaaggagacaaacttgtgctgaggggtttaaagtttcatggttaccatggggtgaagcaagaggaaaggaagcttggtcagaagttcctggtagatgttgatgcttggatggatcttcgacctgctggtgaatctgactgcttgtccgatactctaagttatactgatatataccgaatagtgaaagaggttatggaggggtcacctaaaaatctgctagaatctgtggctcagcttatagcatcgacaaccctcaccaagtatccacaggtatctgctgttcgcgttcaagttggaaagcctcatgtggccgtccaagggcctgttgactacttgggtgtcgagatcattagatacagagatcttgatgttcaaaactagtacatgatgcttgtattattaacaacttcaattttctgctgtttgacaatcattttcaagccaatacaatttgatcaattgtctcaaactcttgatacttaattgaataatgcctttactacacacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="67985" stop="64773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67685" g_stop="67571" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67570" i_stop="66371" i_length="1200">
            <donor d_prob="1.000" d_score="0.84"/>
            <acceptor a_prob="0.911" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66370" g_stop="66178" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="308" r_length="193" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65390" g_stop="65052" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="643" r_length="335" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E429973" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67685" e_stop="67571"/>
          <exon e_start="66370" e_stop="66178"/>
          <exon e_start="65390" e_stop="65052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATTTTCGATATTCAGAAGCCCAGTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCGGTATGTTCTAAAGCTTTAGCCTTTTATTATTATTTGTTCTTTCTTGAGCTGATTTGAGCTTATTCTCAACTAATTTGGGTCTCTGATATCATTTAATTATTCAAAATAAAAGTTTGGGGTTTGAAAATTCAATTGATTTTGATATATAAGCATGTAAAGGTAGAATCTTTATGACTGCATACCAAGTATTTGATGTGGAGCTGCAAAAAAGGAATTTTCTGAAACAGAAGTTATGGTTTTTTTTTGTTTTTTTTTTAGAATGTACTATTGCTAGAGTTTGGTTGAGCAGATGTCGAATCGCCTTTGGCTAGTTCGTGTGTTTACTTCTTCATAGTTTGAAACCCCTAAGTGAAAATCCTGGCTCCGCTAGTGTTTGGGGATTACACTCAGTGGTGGATCCAGGATTTTCATTAAGGAGGGTACGAAAAAAAAGAGTAGTGGTTTGAACTACTAAGCCAACCTCTAATCTTATATTTAGGAGGTTCAAAATTAATATGTAAACATAAAAATTCTTTAAAATACCTTAAATATACAACGTGGGCATACTCTAGGTCCGCCACTGATTACAGTGGGTATATTGTTGTAATAATGCTGGAGAGAGCTAGTAGGATCTCATGAGGGGACCAATCATTTGCAAGACTTATTTCAACTTCATGAAGGCAAAGTTGTTAAAAGATGTTTAAAGAACCTTGTTTTTTGGTTAGTTGGATAGATATATGTACTCGACAAAATTTACAAGTTAAGGTTAGCTCTAGAGATCCTTGATAGTTCATTGATGTCAACCAAATTAGTCTTTTGAAAGTAGTTCCTAGAATGTCTACGCATACTGCGTCATTTGCAAATACCGTAGGAACTATCAAAATACTTAGCTTATCAAAAAGTTTCTTCTTATCTCCTCCTTAGCAAGAAGGTCAGCCAACCTATTTTGCTCTCGGTAGTTATGTTTGATGACTGTATTTCCCAGTCCTTGCATCAATAACCTGCGTTCAGAAGTAATAGAAGAGTGAGGATGTGTCCTTGATTAATCATTTTATTACCTCCATAGGACCAAATTGCTAGGACATAATTGATCACATGACCTGCTTTAGTTTGCAATATTTATGAGGATTTTTTTTTTGTATAACCATCTGGTATCCAGTTCGAGCCCCTGTGAATGGTGAATCCCCTGTAACGACTTCTTTTATGAGTATCCAATGACAGGTCACATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAGGTGAGTGATGCTTTCGAGTTTAATCATTTTGCATTTTTGAGAGTTGAGATGAATGAACAGAACAAACTTGATTTCATAGCTTAATAAATGAAACATCTCGAACGTTTATGTAACAAGGTTCTATTGCTCAGAGGTCAGTTTTAATAATACTCTTTTCACCAGATAGAAAATATACTAGGCTTGAGCAGTTTCACCAGAGTTAAACCGGAAGAGATGAATAGAACAGTACAGACGAGACCTCAGAATTGGGTTTTAAACTTCTGTAAAAGGACTAATGATTTTATAAGTTCTCGTAGTAAGAACTTGACTCATTTGAAACATCTTCGAGAGCACACTGAAGCAGATTTTTTGATGTTATGTAGTTTCTTGGATATTCCATCATACATGGGAATTTTGATGCCACTGCTAGAGGCTCTTGTAATCTCCTACTTTCTTGAGGAAACATTGGACTATTGCCTAATTATTATTTATCTTAGAGTAGTTCACTTTGCACCTAAGGGCGGGATCTAGTGGTCTGGATCCTGATAACTCAAGTAAAATCTCTTGACAGCGTGTGGCAATAAGAAAAGCCCGAAATTCCAATAGCTTAATCAGTGATATAAGGTAACTTTCTATTGGCGCTAACTGATCTCCTGGACGGTGTTTGCTTGTAAGTTACAGTTTCTTTTCTTGTCTTACCAAATCTTAAGAATAAACATTTTCACAGATCAATTTTCTAGCTTGGTTCGTATGCTTTTTTTGGCGTGATCATTCATTGGTTCTATCTTTTAAATCTACAAATTGGCAGACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCAGTACAATTTGATCAATTGTC-ATCACTCTTGATGCTTAATTGACTTACCTTTCCTGTTGCACACTTCT</genome_strand>
        <mrna_strand>CTCATTTTCGAGATTCAGAAGCCCAGAAAACTTCCAATCAAAATTATTATTCAGATTCCGGCGGCTTTCCGGCTGTTCGCCGACCATAAACCAGTCGTCGTAAAACCCAGCTCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATGGATATGCCAAAAGGAGACAAACTTGTGCTGAGGGGTTTAAAGTTTCATGGTTACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGACCTGCTGGTGAATCTGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGTGAAAGAGGTTATGGAGGGGTCACCTAAAAATCTGCTAGAATCTGTGGCTCAGCTTATAGCATCGACAACCCTCACCAAGTATCCACAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAGATCTTGATGTTCAAAACTAGTACA-T--GATGC-TTGTATTATTAACAACTTCAATTTTCTGCTGTTTGACAATCATTTTCAAGCCAATACAATTTGATCAATTGTCTCAAACTCTTGATACTTAATTGAATAATGCCT-TTACTACACACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747467" ref_strand="+" ref_description="SGN-E747467 [GI|38564520]">
      <seq>atggacatgccaaaaggagacaaacttgttctaaggggtttaaaatttcatggataccatggggtgaagcaagaggaaaggaagcttggtcagaagttcctggtagatgttgatgcttggatggatcttcgatctgctggtgaatccgactgcttgtccgatactctaagttatactgatatatacagactagttaaagaggttatggaggggccacctaaaaatctgctagaatctgtggctcaactcattgcatcgacaaccctcaccaagtatccagaggtatctgctgttcgcgttcaagttggaaagcctcatgtggccgtccaagggcctgttgactacttgggtgtcgagatcattagatacagaagtcttgatgttcaaaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="66665" stop="64886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66365" g_stop="66178" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65390" g_stop="65186" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="393" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E747467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66365" e_stop="66178"/>
          <exon e_start="65390" e_stop="65186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAGGTGAGTGATGCTTTCGAGTTTAATCATTTTGCATTTTTGAGAGTTGAGATGAATGAACAGAACAAACTTGATTTCATAGCTTAATAAATGAAACATCTCGAACGTTTATGTAACAAGGTTCTATTGCTCAGAGGTCAGTTTTAATAATACTCTTTTCACCAGATAGAAAATATACTAGGCTTGAGCAGTTTCACCAGAGTTAAACCGGAAGAGATGAATAGAACAGTACAGACGAGACCTCAGAATTGGGTTTTAAACTTCTGTAAAAGGACTAATGATTTTATAAGTTCTCGTAGTAAGAACTTGACTCATTTGAAACATCTTCGAGAGCACACTGAAGCAGATTTTTTGATGTTATGTAGTTTCTTGGATATTCCATCATACATGGGAATTTTGATGCCACTGCTAGAGGCTCTTGTAATCTCCTACTTTCTTGAGGAAACATTGGACTATTGCCTAATTATTATTTATCTTAGAGTAGTTCACTTTGCACCTAAGGGCGGGATCTAGTGGTCTGGATCCTGATAACTCAAGTAAAATCTCTTGACAGCGTGTGGCAATAAGAAAAGCCCGAAATTCCAATAGCTTAATCAGTGATATAAGGTAACTTTCTATTGGCGCTAACTGATCTCCTGGACGGTGTTTGCTTGTAAGTTACAGTTTCTTTTCTTGTCTTACCAAATCTTAAGAATAAACATTTTCACAGATCAATTTTCTAGCTTGGTTCGTATGCTTTTTTTGGCGTGATCATTCATTGGTTCTATCTTTTAAATCTACAAATTGGCAGACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAG</genome_strand>
        <mrna_strand>ATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E696322" ref_strand="+" ref_description="SGN-E696322 [LH_Ea08N08](-)">
      <seq>tattcggtatgtcatgcactaacgtgttttttgttttatcgaaaaacttcaggtatcaattttgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagattgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaactcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacagaactgtaaaagaccaaaaaatttgtaaaaaccagttgaacaaaaggaaaaaaagagcacctttcaagtttcatttctccataaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70322" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70022" g_stop="69612" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="818" r_length="407" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68892" i_stop="68724" i_length="169">
            <donor d_prob="0.509" d_score="0.82"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68723" g_stop="68719" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="823" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E696322" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70022" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
          <exon e_start="68723" e_stop="68719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAA-TTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAGGTCATTTAATTTGCTCCTCCTCTTCCTCTACTTTATTTTTTGTACTTAAATATATAAATTTGGACCTAAGATTATACTCTTGTGTCATAATTATGCAATTTGCAAGTAGTAACAAAGTCAGAAATTTTGATGAAGTGTGTGTGTGTTACAATATGATTTGCAGGAACA</genome_strand>
        <mrna_strand>TATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTCAGGTATCAATTTTGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATTGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAACTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAGAACTGTAAAAGACCAAAAAATTTGTAAAAACCAGTTGAACAAAAG-GAAAAAAAGAGCACCTTTCAAGTTTCATTTCTCCA-TAAACAAAAAAAAAA.........................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217703" ref_strand="+" ref_description="SGN-E217703 [cLEL-25-A9](-)">
      <seq>ggaacagtttccgcagcatccagcagcctcgttgaatgcacagtctcttggtttacgttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttaggttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccatgttcatagtatgatatcctttctttagcttaacttcatgtaaacaacattactgtaaaagacccaaaaattgtagaaatcagttgagcaaaagtgaaaaaaagagcgacattcaagtttcatttctccattaaacaaagctatgagttaaggtcatttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69501" stop="68578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69201" g_stop="68887" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="323" polyA_stop="337"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217703" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>315</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69201" e_stop="68887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</genome_strand>
        <mrna_strand>GGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATGCACAGTCTCTTGGTTTACGTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGGTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCATGTTCATAGTATGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACATTACTGTAAAAGACCCAAAAATTGTAGAAATCAGTTGAGCAAAAGTGAAAAAAAGAGCGACATTCAAGTTTCATTTCTCCATTAAACAAAGCTATGAGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217623" ref_strand="+" ref_description="SGN-E217623 [cLEL-25-A19](-)">
      <seq>gtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagccagatgttagagtgcagcagtttagaaagtcttcaaggtttagtttcatgaaacctctgaatagggctgggtaggtgtcactcttgtatctagccttgttcatagtagtgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgttccaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaacgctttgagttaaggtcatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69495" stop="68578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69195" g_stop="68887" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="318" polyA_stop="335"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217623" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69195" e_stop="68887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGT-CTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</genome_strand>
        <mrna_strand>GTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGCCAGATGTTAGAGTGCAGCAGTTTAGAAAGTCTTCAAGGTTTAGTTTCATGAAACCTCTGAATAGGGCTGGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTAGTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGTTCCAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTTTGAGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217567" ref_strand="+" ref_description="SGN-E217567 [cLEL-25-A9](-)">
      <seq>agtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaacgctntgagttaaggtcatttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69437" stop="68578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69137" g_stop="68887" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="259" polyA_stop="276"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217567" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>251</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69137" e_stop="68887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</genome_strand>
        <mrna_strand>AGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTNTGAGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E687984" ref_strand="+" ref_description="SGN-E687984 [T3_tus_81_P03]">
      <seq>ggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctngccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaaaaaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaacgctttgagtaaggtcatttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70109" stop="68578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69809" g_stop="68892" g_length="918"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="919" r_length="919" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E687984" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69809" e_stop="68892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGT-AAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAG</genome_strand>
        <mrna_strand>GGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTNGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAAAACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747177" ref_strand="+" ref_description="SGN-E747177 [GI|8489785]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="793" r_length="408" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E747177" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747177" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371677" ref_strand="+" ref_description="SGN-E371677 [TUS-29-K16]">
      <seq>agaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtangtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaatttgtaaaaatcagttgaacaaaaagtgaaaaaaaaaaccacttttcaagatttaaaaaaaaaaaaaaaaactcgaggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71306" stop="14359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71006" g_stop="70985" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="381" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="792" r_length="411" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E371677" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371677" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71006" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAAT-TGTAAAAATCAGTTGAAC-AAAAGTGAAAAAAAGAGCAAC-TTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>AGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTANGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTTGTAAAAATCAGTTGAACAAAAAGTGAAAAAAAAAACCACTTTTCAAGATTTAAAAAAAAAAAAAAAAACTCGAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219722" ref_strand="+" ref_description="SGN-E219722 [cLEL-24-O24](-)">
      <seq>tcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70034" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69734" g_stop="69612" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="531" r_length="408" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E219722" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E219722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69734" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>TCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225167" ref_strand="+" ref_description="SGN-E225167 [cLEL-17-G17](-)">
      <seq>agctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttctagtttcgtttctcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70003" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69703" g_stop="69612" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="500" r_length="408" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E225167" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69703" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>AGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCTAGTTTCGTTTCTCAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228867" ref_strand="+" ref_description="SGN-E228867 [cLEL-29-H11](-)">
      <seq>gagcttcaatcttccgaaaatgagcacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctaatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69984" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69687" g_stop="69612" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="483" r_length="408" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E228867" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69687" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>GAGCTTCAATCTTCCGAAAATGAGCA-CAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTAATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223596" ref_strand="+" ref_description="SGN-E223596 [cLEL-14-B12](-)">
      <seq>tcttccgaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaaagatcccccttggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69978" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69678" g_stop="69612" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="474" r_length="408" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E223596" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69678" e_stop="69612"/>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACC-AAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>TCTTCCG-AAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAAGATCCCCC-TTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225589" ref_strand="+" ref_description="SGN-E225589 [cLEL-17-G15](-)">
      <seq>tggtttaccatctgatgcactgattagaacattgagttcgcccagatcccccattggtccaccgaaatactttgaggagccatccaagatcgtgaggccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttaaaaagtcttcaagtattagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccctgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgatcaaaagtgaaaaaaagagcaactttcaagtttcatttcccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69601" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69302" g_stop="68893" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E225589" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69302" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>TGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCGCCCAGATCCCCCATTGGTCCACCGAAATACTTTGAGGAGCCATCCAAGATCGTGAGGCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAAAAAGTCTTCAAGTATTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCCTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGATCAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTC-CCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341832" ref_strand="+" ref_description="SGN-E341832 [cTOF-9-F15]">
      <seq>tatggtttaccatctgatgcactgattagaacattgagttcaccaagctcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69601" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69300" g_stop="68893" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="412" r_length="408" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E341832" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69300" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGCTCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E228963" ref_strand="+" ref_description="SGN-E228963 [cLEL-29-H11](-)">
      <seq>atgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctacattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69588" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69288" g_stop="68893" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E228963" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69288" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>ATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTACATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E217909" ref_strand="+" ref_description="SGN-E217909 [cLEL-23-C15](-)">
      <seq>atgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69588" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69288" g_stop="68893" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E217909" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69288" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>ATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223216" ref_strand="+" ref_description="SGN-E223216 [cLEL-14-B12](-)">
      <seq>aagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttagcttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtggaaaaaagagcaactttcaagtttcatttccccattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69560" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69260" g_stop="68893" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E223216" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69260" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>AAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAGCTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGGAAAAAAGAGCAACTTTCAAGTTTCATTTCCCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220058" ref_strand="+" ref_description="SGN-E220058 [cLEL-24-O24](-)">
      <seq>aagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69560" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69260" g_stop="68893" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E220058" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69260" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>AAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E218129" ref_strand="+" ref_description="SGN-E218129 [cLEL-23-C15](-)">
      <seq>atcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaaattcatggaacaacaaaaactgtaaaagtccaaaaaattgtaacaatcagttgggcaaaagtgtaaaacgtagcaactttcaagtttcatttctccattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69557" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69257" g_stop="68893" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E218129" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218129" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69257" e_stop="68893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAAC-AAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA</genome_strand>
        <mrna_strand>ATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAAATTCATG-GAACAACAAAAACTGTAAAAGTCCAAAAAATTGTAACAATCAGTTGGGCAAAAGTGTAAAACGTAGCAACTTTCAAGTTTCATTTCTCCATTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225590" ref_strand="+" ref_description="SGN-E225590 [cLEL-17-G17](-)">
      <seq>tcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69982" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69682" g_stop="69612" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68894" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="478" r_length="407" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E225590" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69682" e_stop="69612"/>
          <exon e_start="69300" e_stop="68894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTG</genome_strand>
        <mrna_strand>TCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225741" ref_strand="+" ref_description="SGN-E225741 [cLEL-17-G15](-)">
      <seq>aatatggtttgccatcttatgcactgattagaacattgagttcgccaagatcccccattggtccacccaaatactatgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagatgttagtttgcaccagtttagaaagtcttcaagttttagtttcatgaaacctttgtatagagcaaggtaggtgtcactcttgtatctagccatgttcatagtctgatatcctttctgtagcttaacttcatgtaaacaccaaatctgtaaaagaccaaaaaattgtaaaaatcagttgatcaaaagtgaaaaaaagagcaactttcaagtttcatttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69605" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69300" g_stop="68894" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="413" r_length="407" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E225741" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69300" e_stop="68894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTG</genome_strand>
        <mrna_strand>GTTTGCCATCTTATGCACTGATTAGAACATTGAGTTCGCCAAGATCCCCCATTGGTCCACCCAAATACTATGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGATGTTAGTTTGCACCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGAAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCATGTTCATAGTCTGATATCCTTTCTGTAGCTTAACTTCATGTAAACACCAAATCTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGATCAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E401672" ref_strand="+" ref_description="SGN-E401672 [PPC-4-P16]">
      <seq>cgtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtgccacactcttggatctagccttgttcatatcctttctttagcttaacttccttgaaacacagccctgtaaaagtgaaaaaattttgaaaaaccagttaaacaaaagtgaaaaaagagcagctttttaagttccttttccccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71321" stop="68601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71021" g_stop="70985" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="396" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68902" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="789" r_length="393" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E401672" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71021" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTG--TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAAC-TTTCAAGTTTCATTTCTCCATTAAACA</genome_strand>
        <mrna_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGCCACACTCTTGGATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTAACTTCCTTGAAAC-ACAGCCCTGTAAAAGTGAAAAAATTTTGAAAAACCAGTTAAACAAAAGTG-AAAAAAGAGCAGCTTTTTAAGTTCCTTTTCCCCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E691698" ref_strand="+" ref_description="SGN-E691698 [LH_Ea06M16]">
      <seq>taaaatatctgtttgaaggtattgtgaaaacgccattaaaccttcattcaagctttcaagtatcaattttgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagattgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaactcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacagaactgtaaaagaccaaaaaatttgtaaaaaccagttgaacaaaagtgaaaaaaagagcacctttcaagtttcatttctccattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71301" stop="68604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71002" g_stop="70944" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.898"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70943" i_stop="69971" i_length="973">
            <donor d_prob="0.476" d_score="0.92"/>
            <acceptor a_prob="0.862" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="418" r_length="359" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68904" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="816" r_length="398" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E691698" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71002" e_stop="70944"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAA-TTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAA</genome_strand>
        <mrna_strand>TAAAATATCTGTTTGAAGGTATTGTGAAAACGCCATTAAACCTTCATTCAAGCTTTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATTTTGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATTGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAACTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAGAACTGTAAAAGACCAAAAAATTTGTAAAAACCAGTTGAACAAAAGTGAAAAAAAGAGCACCTTTCAAGTTTCATTTCTCCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352274" ref_strand="+" ref_description="SGN-E352274 [cTOS-13-N16]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtangtgtcactcttgtatctagccttgttcatagtctgatatccctttcttagctaaacttcatgtaaacaacaaaactgtaaaagaccaaaaattgtaaaaatcagttgaacaaaagtgaaaaaagagcaacttttcagtttcatttcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="68613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68905" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="779" r_length="394" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E352274" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAA</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTANGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCCTTTCTTAGCTAAACTTCATGTAAACAACAAAACTGTAAAAGACC-AAAAATTGTAAAAATCAGTTGAACAAAAGTG-AAAAAAGAGCAACTTTTCAGTTTCATTTCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371676" ref_strand="+" ref_description="SGN-E371676 [TUS-29-K16](-)">
      <seq>taaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaaatgaaaaaaagagcaactttcaagtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69975" g_stop="69612" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68910" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="755" r_length="391" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E371676" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69975" e_stop="69612"/>
          <exon e_start="69300" e_stop="68910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCC</genome_strand>
        <mrna_strand>TAAAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAATGAAAAAAAGAGCAACTTTCAAGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391051" ref_strand="-" ref_description="SGN-E391051 [TUS-47-P23]">
      <seq>ttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaatttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70196" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69896" g_stop="69612" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68910" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="676" r_length="391" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E391051" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391051" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69896" e_stop="69612"/>
          <exon e_start="69300" e_stop="68910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCC</genome_strand>
        <mrna_strand>TTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAATTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E390890" ref_strand="-" ref_description="SGN-E390890 [TUS-47-O24]">
      <seq>cgccaggtagaggatttttccccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtttgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70179" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69879" g_stop="69612" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68910" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="659" r_length="391" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E390890" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390890" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69879" e_stop="69612"/>
          <exon e_start="69300" e_stop="68910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCC</genome_strand>
        <mrna_strand>CGCCAGGTAGAGGATTTTTCCCCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTTTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290341" ref_strand="-" ref_description="SGN-E290341 [cLES-20-M3]">
      <seq>tgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70048" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69748" g_stop="69612" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68911" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="527" r_length="390" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E290341" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290341" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69748" e_stop="69612"/>
          <exon e_start="69300" e_stop="68911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTC</genome_strand>
        <mrna_strand>TGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717916" ref_strand="+" ref_description="SGN-E717916 [FC03AD12]">
      <seq>gggcgattggcggccaatcggccgaattgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="81" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="440" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68913" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="828" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E717916" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTC</genome_strand>
        <mrna_strand>AATTGATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350346" ref_strand="+" ref_description="SGN-E350346 [cTOS-5-C6]">
      <seq>gaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacnacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcactttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70259" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69959" g_stop="69612" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68918" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="730" r_length="382" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E350346" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69959" e_stop="69612"/>
          <exon e_start="69300" e_stop="68918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTC</genome_strand>
        <mrna_strand>GAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACNACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGC-ACTTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355447" ref_strand="+" ref_description="SGN-E355447 [cTOS-25-O22]">
      <seq>gaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70259" stop="68623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69959" g_stop="69612" g_length="348"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="348" r_length="348" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68918" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="731" r_length="383" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E355447" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69959" e_stop="69612"/>
          <exon e_start="69300" e_stop="68918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTC</genome_strand>
        <mrna_strand>GAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720771" ref_strand="+" ref_description="SGN-E720771 [FC11DC03]">
      <seq>ggcgattggcggccaatcggccgaattgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="80" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="439" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68921" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="819" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E720771" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGT</genome_strand>
        <mrna_strand>AATTGATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599430" ref_strand="+" ref_description="SGN-E599430 [52418]">
      <seq>aaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggactttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcggttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgttcatatcctttctttagcttaacttcttgtaaacaacagcactgtaaaagtgaaaaaaatttgtaaaaacccagttaaacaaaagtgaaaaaaagagcagcttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="375" r_length="358" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68922" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="751" r_length="376" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E599430" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E599430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68922"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAA-TTGTAAAAA-TCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAG</genome_strand>
        <mrna_strand>GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGA-CTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCGGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTAACTTCTTGTAAACAACAGCACTGTAAAAGTGAAAAAAATTTGTAAAAACCCAGTTAAACAAAAGTGAAAAAAAGAGCAGCTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746089" ref_strand="+" ref_description="SGN-E746089 [GI|47105313]">
      <seq>gatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactaaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtctaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71336" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71037" g_stop="70985" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="68923" g_length="1048"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="1099" r_length="1046" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1104" polyA_stop="1123"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E746089" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1101</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71037" e_stop="70985"/>
          <exon e_start="69970" e_stop="68923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAA</genome_strand>
        <mrna_strand>GATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATAC--TAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717603" ref_strand="+" ref_description="SGN-E717603 [FC02AH02]">
      <seq>gggcgattggcggccaatcggccgaattcccatggggatccgatgacccgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71338" stop="68627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71032" g_stop="70985" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="97" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="456" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68927" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="830" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E717603" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71032" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTT</genome_strand>
        <mrna_strand>GTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733745" ref_strand="+" ref_description="SGN-E733745 [LB10DC12]">
      <seq>cgatttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71327" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71027" g_stop="70985" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="402" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="769" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E733745" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71027" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>CGATTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733560" ref_strand="+" ref_description="SGN-E733560 [LB10BD06]">
      <seq>agttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71325" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71025" g_stop="70985" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="400" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="767" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E733560" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71025" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>AGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459571" ref_strand="+" ref_description="SGN-E459571 [cPRO-28-C14]">
      <seq>acctaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggagtttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttctccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggttttactttcagaagtcagttgttagtttgcagcagtttagaaagtctctttaagtttagtttcacgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgntcatagtctgatatcctttctttagcttaactttctgtaaacacagcactgtaaaagtgaaaaaatttgtaaaaacagntgaacaaatttgaaaaagagcagcttttgagtttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="378" r_length="359" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="746" r_length="368" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="761" polyA_stop="771"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E459571" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGG-TTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCT-TCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAGTTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCTCCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTTACTTTCA-GAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTCTTTAAGTTTAGTTTCACGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTGNTCATAGTCTGATATCCTTTCTTTAGCTTAACTTTCTGTAAAC-ACAGCACTGTAAAAGTGAAAAAATTTGTAAAAA-CAGNTGAACAAATTTGAAAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431393" ref_strand="+" ref_description="SGN-E431393 [STM-55-K4]">
      <seq>ggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgttcatatcctttctttagcttaacttctttgtaacacagcactgtaaaagtgaaaaaaatttgtaaaaaccagttaaacaaaagtgaaaaagagcagctttttagtttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70230" stop="68690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69930" g_stop="69612" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="681" r_length="362" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="705"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E431393" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69930" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAA-TTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>GGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTAACTTCTTTGTAAC-ACAGCACTGTAAAAGTGAAAAAAATTTGTAAAAACCAGTTAAACAAAAGTGAAAAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431394" ref_strand="-" ref_description="SGN-E431394 [STM-55-K4]">
      <seq>cagacccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgttcatatcctttctttagcttaacttcttgtaaacaacagcactgtaaaagtgaaaaaaatttgtaaaaaccagttaaacaaaagtgaaaaaaagagcagcttttaagtttcaaaaaaaaaagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70101" stop="68617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69801" g_stop="69612" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="553" r_length="363" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="570" polyA_stop="580"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E431394" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E431394" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69801" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAA-TTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>CAGACCCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTAACTTCTTGTAAACAACAGCACTGTAAAAGTGAAAAAAATTTGTAAAAACCAGTTAAACAAAAGTGAAAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349216" ref_strand="+" ref_description="SGN-E349216 [cTOS-2-O6]">
      <seq>aggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69992" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69692" g_stop="69612" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="448" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E349216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69692" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>AGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357517" ref_strand="+" ref_description="SGN-E357517 [cTOS-23-B15]">
      <seq>aggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="69992" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69692" g_stop="69612" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68934" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="448" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E357517" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69692" e_stop="69612"/>
          <exon e_start="69300" e_stop="68934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGA</genome_strand>
        <mrna_strand>AGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577081" ref_strand="-" ref_description="SGN-E577081 [32607]">
      <seq>ccagggagaggaatatggtgctggtaatgatgttctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcggttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgttcatatcctttctttagctttaactttcttgtaaacaacagcactgtaaaagtgaaaaaatttgtaaaaccagttaaacaaaagtgaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70096" stop="68635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69796" g_stop="69612" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68935" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="546" r_length="362" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E577081" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577081" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69796" e_stop="69612"/>
          <exon e_start="69300" e_stop="68935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGC-TTAAC-TTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAG</genome_strand>
        <mrna_strand>CCAGGGAGAGGAATATGGTGCTGGTAATGATGTT-CTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCGGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTTAACTTTCTTGTAAACAACAGCACTGTAAAAGTGAAAAAATTTGT-AAAACCAGTTAAACAAAAGTGAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724320" ref_strand="+" ref_description="SGN-E724320 [FC23DA06]">
      <seq>atacgtgtacgagttcttctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71336" stop="68634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71036" g_stop="70985" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="411" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68936" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="776" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E724320" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71036" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAA</genome_strand>
        <mrna_strand>ATACGTGTACGAGTTCTTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592412" ref_strand="+" ref_description="SGN-E592412 [46145]">
      <seq>tgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaacccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcggttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagccttgttcatatcctttctttagcttaacttcttgtaaacaacagcactgtaaaaagtgaaaaaacatttgtaaaaaccagttaaacaaaagtgaaaaaaaagagcaggtttttgggggggcgcgggtaccccaatttcgccctatagtgagtccgtatatacgcgcgctcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71309" stop="68626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71009" g_stop="70985" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="384" r_length="359" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68936" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="747" r_length="363" r_score="0.896"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E592412" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E592412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71009" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGT-AAAAGACCAAAAA-A-TTGTAAAAATCAGTTGAACAAAAGTGAAAAAAA</genome_strand>
        <mrna_strand>TGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAACCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCGGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCTTG----T--TC--ATATCCTTTCTTTAGCTTAACTTCTTGTAAACAACAGCACTGTAAAAAGTGAAAAAACATTTGTAAAAACCAGTTAAACAAAAGTGAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724352" ref_strand="+" ref_description="SGN-E724352 [FC23DD09]">
      <seq>ccatggggatcccatgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtnaaaatcagttgaacaaaagtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71338" stop="68637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71036" g_stop="70985" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="68" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="427" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68937" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="791" r_length="364" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E724352" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71036" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAA</genome_strand>
        <mrna_strand>ATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTNAAAATCAGTTGAACAAAAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723994" ref_strand="+" ref_description="SGN-E723994 [FC22CH08]">
      <seq>atcggccgaattcccatggggatccgcctatacaggtacgagttcgtctctgtagctgaagaacaaaacctctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgccccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71336" stop="68637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71030" g_stop="70985" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="81" r_length="46" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="441" r_length="360" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68937" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="805" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E723994" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71030" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCG-CCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAA</genome_strand>
        <mrna_strand>GTACGAGTTCGTCTCTGTAGCTGAAGAACAAAACCTCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298348" ref_strand="+" ref_description="SGN-E298348 [cLET-41-D11]">
      <seq>aacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagactgatatcctttctttagcttaacttcatgtaaacaacaaaactgtgaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70146" stop="68639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69846" g_stop="69612" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="68939" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="597" r_length="362" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E298348" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69846" e_stop="69612"/>
          <exon e_start="69300" e_stop="68939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAA</genome_strand>
        <mrna_strand>AACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGACTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTGAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213340" ref_strand="+" ref_description="SGN-E213340 [cLEC-71-P20]">
      <seq>gaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttncagttttagtttcatgtaacctttgtatagagcaaagtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagctttacttcatgtagacaaccaaactgtaaaagaccaaaaaattgtaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71305" stop="68659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71005" g_stop="70985" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="380" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68959" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="722" r_length="342" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E213340" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71005" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAAT</genome_strand>
        <mrna_strand>GAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTNCAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAAGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTTACTTCATGTAGACAACCAAACTGTAAAAGACCAAAAAATTGTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724365" ref_strand="+" ref_description="SGN-E724365 [FC23DF01]">
      <seq>cggccgattgatacgtgtacgacttcgtctctgtagctgaagaaaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71223" g_stop="71218" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71217" i_stop="71042" i_length="176">
            <donor d_prob="0.735" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="61" r_length="55" r_score="0.930"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.96"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="420" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69300" g_stop="68963" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="758" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E724365" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71223" e_stop="71218"/>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCGGTTTGGTATTAAAAATATCTGTTTGGCTATAAAAGAATATTTTAATTAGAATTATTTAACTCTTTCTCGAAGGTCAATCAGTGGACTGGTTCGGTATGTCTAACCTCAAGTTCGGTTCTAAACCTAATAGGCTCGGTATTCCTGCCTATAAATACAAGACCTTAACAGCAGATAAGATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAA</genome_strand>
        <mrna_strand>CGGCCG................................................................................................................................................................................A-TTGATACGTGTACGACTTCGTCTCTGTAGCTGAAGAA-AAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339854" ref_strand="+" ref_description="SGN-E339854 [cTOF-3-M5]">
      <seq>gaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtangtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71308" stop="68680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="70985" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="383" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68980" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="704" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E339854" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAA</genome_strand>
        <mrna_strand>GAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTANGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351483" ref_strand="+" ref_description="SGN-E351483 [cTOS-12-A23]">
      <seq>ttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71323" stop="68702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71023" g_stop="70985" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="398" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69002" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="697" r_length="299" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E351483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71023" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTC</genome_strand>
        <mrna_strand>TTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E211174" ref_strand="+" ref_description="SGN-E211174 [cLEC-70-K24]">
      <seq>agaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagccttcaagttttagtttcatgtaacctttgtatagagcaaggtacgtgtcactcttgtatctagccttgttcatagcctgatatcctttctttagcttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71306" stop="68704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71006" g_stop="70985" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="381" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69004" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="678" r_length="297" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E211174" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71006" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACT</genome_strand>
        <mrna_strand>AGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGCCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTACGTGTCACTCTTGTATCTAGCCTTGTTCATAGCCTGATATCCTTTCTTTAGCTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E723830" ref_strand="+" ref_description="SGN-E723830 [FC22AD09]">
      <seq>aacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccaaaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttaaaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71304" stop="68705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71004" g_stop="70985" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="379" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69005" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="675" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E723830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71004" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAAC</genome_strand>
        <mrna_strand>AACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAAAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAAAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462007" ref_strand="+" ref_description="SGN-E462007 [cPRO-10-E12]">
      <seq>acctaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggagtttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttctccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggttttactttcagaagtcagttgttagtttgcagcagtttagaaagtctctttaagttttagtttcacgtaacctttgtatagagcaaggtangtggcacactcttgtatctagccttgttcatagtctgatatcctttctttagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="378" r_length="359" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69007" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="676" r_length="298" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E462007" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGG-TTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAG--TCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTA</genome_strand>
        <mrna_strand>GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAGTTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCTCCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTTACTTTCA-GAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTCTTTAAGTTTTAGTTTCACGTAACCTTTGTATAGAGCAAGGTANGTGGCACACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E410805" ref_strand="+" ref_description="SGN-E410805 [PPI-18-K5]">
      <seq>cgagatcgtctctgtagctgaagacctaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggagtttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttctccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggttttactttcagaagtcagttgttagtttgcagcagtttagaaagtctcttttagttttagtttcacgtaacctttgtatagagcaaggtangtggcacactcttgtatctagccttgntcatagtctgatatcctttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71327" stop="68713"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71027" g_stop="70985" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.88"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="401" r_length="359" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69013" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="693" r_length="292" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E410805" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E410805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71027" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGG-TTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAG--TCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTT</genome_strand>
        <mrna_strand>CGAGATCGTCTCTGTAGCTGAAG-ACCTAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAGTTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCTCCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTTACTTTCA-GAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTCTTTTAGTTTTAGTTTCACGTAACCTTTGTATAGAGCAAGGTANGTGGCACACTCTTGTATCTAGCCTTGNTCATAGTCTGATATCCTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292187" ref_strand="+" ref_description="SGN-E292187 [cLET-1-D11]">
      <seq>gagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatacggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71326" stop="68724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71026" g_stop="70985" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="401" r_length="359" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69026" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="676" r_length="275" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E292187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71026" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69026"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTG</genome_strand>
        <mrna_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATACGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453612" ref_strand="+" ref_description="SGN-E453612 [cSTS-20-H9]">
      <seq>gaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtangtggcacactcttgtatctagccttgttcatatcctttctttagcttaacttcttgtaaacacagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71308" stop="68685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="70985" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="383" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69031" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="656" r_length="273" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E453612" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCTTGTTCATA</genome_strand>
        <mrna_strand>GAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTANGTGGCACACTCTTGTATCTAGCCTTGTTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E713691" ref_strand="+" ref_description="SGN-E713691 [FB09BD10]">
      <seq>ccgtttctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtataaagcaaggtaggtgtcactcttgtatctagcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71321" stop="68738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="70985" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="397" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69038" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="660" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E713691" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTT</genome_strand>
        <mrna_strand>CCGTTTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAAAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E464197" ref_strand="+" ref_description="SGN-E464197 [cPRO-17-C14]">
      <seq>ggaagatcacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaaagtctttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70230" stop="68739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69930" g_stop="69612" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69039" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="583" r_length="265" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E464197" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69930" e_stop="69612"/>
          <exon e_start="69300" e_stop="69039"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAG-AAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGCCT</genome_strand>
        <mrna_strand>GGAAGATC-ACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAAGTCTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E623007" ref_strand="+" ref_description="SGN-E623007 [73380]">
      <seq>gaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcagttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagcaaggtaggtggcacactcttgtatctagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71308" stop="68741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="70985" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="383" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69041" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="646" r_length="263" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E623007" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGT-G-TCACTCTTGTATCTAGC</genome_strand>
        <mrna_strand>GAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGGCACACTCTTGTATCTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252104" ref_strand="+" ref_description="SGN-E252104 [cLEG-8-G11]">
      <seq>aaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtataaagcaaggtaagtgtcactcttgtatctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71301" stop="68742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="70985" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="376" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69042" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="635" r_length="259" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E252104" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAG</genome_strand>
        <mrna_strand>AAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAAAGCAAGGTAAGTGTCACTCTTGTATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280375" ref_strand="+" ref_description="SGN-E280375 [cLER-1-M18]">
      <seq>agaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71306" stop="68751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71006" g_stop="70985" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="381" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69051" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="631" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E280375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71006" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCT</genome_strand>
        <mrna_strand>AGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568522" ref_strand="+" ref_description="SGN-E568522 [12816]">
      <seq>cgtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcgaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaagtcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccaccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcgagcctcgtttgaattccagtctctgggtttactttcagaaagtcggttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacgttgtatagagcaagtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71321" stop="68761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71021" g_stop="70985" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="398" r_length="361" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69065" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="634" r_length="236" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E568522" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71021" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGC-AATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAA-TCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGC-AGCCTCG-TTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAG</genome_strand>
        <mrna_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCGAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAAGTCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCA-CCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCGAGCCTCGTTTGAATT-CCAGTCTCTGGGTTTACTTTCAGAAAGTCGGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAA-CGTTGTATAGAGCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E568550" ref_strand="+" ref_description="SGN-E568550 [12851]">
      <seq>cgtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaagatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcggttgaattcccagtctcttggtttactttcagaaagtcggttgttagtttgcagcagtttagaaagtcttttaagctttagtttcatgtaacctttgtatagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71321" stop="68767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71021" g_stop="70985" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="396" r_length="359" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69067" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="632" r_length="236" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E568550" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71021" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTC-GTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC-TTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCA</genome_strand>
        <mrna_strand>CGTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAAGATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCGGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTTTTAAGCTTTAGTTTCATGTAACCTTTGTATAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418531" ref_strand="+" ref_description="SGN-E418531 [STM-27-D4]">
      <seq>taaatctgataaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggatttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttctccaagatcccccattgggccacccaaatactttgagaaggcatccaagattgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggttttactttcagaagtcagttgttagtttgcagcagtttagaaagtctctttaagttttagtttcatgtaacctttgtatagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="374" r_length="359" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69069" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="608" r_length="234" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E418531" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGG-TTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAG--TCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAG</genome_strand>
        <mrna_strand>GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCTCCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATTGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTTACTTTCA-GAAGTCAGTTGTTAGTTTGCAGCAGTTTAGAAAGTCTCTTTAAGTTTTAGTTTCATGTAACCTTTGTATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291048" ref_strand="+" ref_description="SGN-E291048 [cLET-8-E21]">
      <seq>tcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71322" stop="68774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="70985" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="397" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69074" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="624" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E291048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTA</genome_strand>
        <mrna_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E277021" ref_strand="+" ref_description="SGN-E277021 [cLEN-22-A14]">
      <seq>tctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaagaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaaccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71317" stop="68777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71017" g_stop="70985" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="392" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69077" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="616" r_length="224" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E277021" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71017" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTT</genome_strand>
        <mrna_strand>TCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAAGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E264941" ref_strand="+" ref_description="SGN-E264941 [cLEI-10-F7]">
      <seq>tgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttaaaaagtcttcaagttttagtttcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71309" stop="68785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71009" g_stop="70985" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="384" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69086" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="599" r_length="215" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E264941" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264941" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71009" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCAT</genome_strand>
        <mrna_strand>TGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAAAAAGTCTTCAAGTTTTAGTTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E306951" ref_strand="+" ref_description="SGN-E306951 [cLEY-11-O20]">
      <seq>aacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71304" stop="68794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71004" g_stop="70985" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="379" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69094" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="586" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E306951" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71004" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69094"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTT</genome_strand>
        <mrna_strand>AACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304107" ref_strand="+" ref_description="SGN-E304107 [cLEX-6-P7]">
      <seq>ttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71323" stop="68795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71023" g_stop="70985" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="398" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69095" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="604" r_length="206" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E304107" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71023" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTT</genome_strand>
        <mrna_strand>TTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341979" ref_strand="+" ref_description="SGN-E341979 [cTOF-10-M13]">
      <seq>aagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatacagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71307" stop="68799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71007" g_stop="70985" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="382" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69099" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="584" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E341979" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71007" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAA</genome_strand>
        <mrna_strand>AAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATACAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307814" ref_strand="+" ref_description="SGN-E307814 [cLEY-20-M7]">
      <seq>gaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71305" stop="68804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71005" g_stop="70985" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="380" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69104" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="577" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E307814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71005" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC</genome_strand>
        <mrna_strand>GAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265432" ref_strand="+" ref_description="SGN-E265432 [cLEI-9-F11]">
      <seq>aaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaagaagtcagatgttagtttgcagcagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="373" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69112" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="562" r_length="189" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E265432" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTT</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAAGAAGTCAGATGTTAGTTTGCAGCAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346883" ref_strand="+" ref_description="SGN-E346883 [cTOF-32-K4]">
      <seq>tctgtagctgaagaaaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaagaagtcagatgttagtttgcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71317" stop="68814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71017" g_stop="70985" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="391" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69114" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="578" r_length="187" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E346883" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71017" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGT</genome_strand>
        <mrna_strand>TCTGTAGCTGAAGAA-AAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAAGAAGTCAGATGTTAGTTTGCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E289406" ref_strand="+" ref_description="SGN-E289406 [cLET-3-K21]">
      <seq>aaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71301" stop="68814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71001" g_stop="70985" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="376" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69114" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="563" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E289406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71001" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGT</genome_strand>
        <mrna_strand>AAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292757" ref_strand="+" ref_description="SGN-E292757 [cLET-11-F12]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="68816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69116" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="570" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E292757" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292757" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCA</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442211" ref_strand="+" ref_description="SGN-E442211 [cSTA-32-G22]">
      <seq>cgaggtaaatctgataaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggatttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttctccaagatcccccattgggccacccaaatactttgagaaggcatccaagattgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggttttactttcagaagtcagttgttagtttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="379" r_length="359" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69117" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="563" r_length="184" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E442211" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGG-TTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGC</genome_strand>
        <mrna_strand>GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCTCCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATTGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTTACTTTCA-GAAGTCAGTTGTTAGTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287582" ref_strand="+" ref_description="SGN-E287582 [cLES-9-H18]">
      <seq>agggctaggatttttcaccagaatggcggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70169" stop="68817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69875" g_stop="69612" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69117" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="448" r_length="184" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E287582" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69875" e_stop="69612"/>
          <exon e_start="69300" e_stop="69117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGC</genome_strand>
        <mrna_strand>AGGGCTAGGATTTTTCACCAGAATGGCGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569962" ref_strand="+" ref_description="SGN-E569962 [14472]">
      <seq>ctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttttccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcagaaagtcggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="68830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70985" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="393" r_length="359" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69130" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="564" r_length="171" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E569962" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGAT</genome_strand>
        <mrna_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTTCCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGAAAGTCGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476592" ref_strand="+" ref_description="SGN-E476592 [cSTB-45-I20]">
      <seq>gtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgagttcaccaagatcccccattgggccacccaaatactttgagaaggcatccaagatcgtgagcccgaggaacagtttccgcagcatccagcaacctcgttgaattcccagtctcttggtttactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="68842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="395" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69142" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="554" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E476592" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTC</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGTTCACCAAGATCCCCCATTGGGCCACCCAAATACTTTGAGAAGGCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAACCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331652" ref_strand="+" ref_description="SGN-E331652 [cTOD-7-C14]">
      <seq>tctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71319" stop="68842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71019" g_stop="70985" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="394" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69142" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="553" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E331652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71019" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTC</genome_strand>
        <mrna_strand>TCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E703965" ref_strand="+" ref_description="SGN-E703965 [FA22DH08]">
      <seq>gaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71308" stop="68843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="70985" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69143" g_length="828"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="852" r_length="828" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E703965" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="70985"/>
          <exon e_start="69970" e_stop="69143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTT</genome_strand>
        <mrna_strand>GAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E328602" ref_strand="+" ref_description="SGN-E328602 [cTOC-23-N5]">
      <seq>gatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaagaacagtttccgcagcatccagcagcctcgttgaatttccagtctcttggtttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70108" stop="68844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69808" g_stop="69144" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E328602" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69808" e_stop="69144"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTT</genome_strand>
        <mrna_strand>GATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAAGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTTCCAGTCTCTTGGTTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719110" ref_strand="+" ref_description="SGN-E719110 [FC06DB03]">
      <seq>agggcgattggcggccaatcggccgaattgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="82" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69159" g_length="812"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="894" r_length="812" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E719110" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAG</genome_strand>
        <mrna_strand>AATTGATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207624" ref_strand="+" ref_description="SGN-E207624 [cLEC-32-K18]">
      <seq>ctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="68884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70985" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="393" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69184" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="510" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E207624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCA</genome_strand>
        <mrna_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296096" ref_strand="+" ref_description="SGN-E296096 [cLET-24-C20]">
      <seq>gtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacaatttccgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="68886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="395" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69186" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="510" r_length="115" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E296096" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAG</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAATTTCCGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291545" ref_strand="+" ref_description="SGN-E291545 [cLET-6-C24]">
      <seq>gagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71326" stop="68903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71026" g_stop="70985" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="401" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69203" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="499" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E291545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71026" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCG</genome_strand>
        <mrna_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E312548" ref_strand="+" ref_description="SGN-E312548 [cLEZ-20-N12]">
      <seq>gaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71308" stop="68905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71008" g_stop="70985" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="383" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69205" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="479" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E312548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71008" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</genome_strand>
        <mrna_strand>GAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269662" ref_strand="+" ref_description="SGN-E269662 [cLEM-17-E21]">
      <seq>aagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71307" stop="68905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71007" g_stop="70985" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="382" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69205" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="478" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E269662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71007" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</genome_strand>
        <mrna_strand>AAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307442" ref_strand="+" ref_description="SGN-E307442 [cLEY-12-H19]">
      <seq>atctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="371" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69205" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="467" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E307442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E292800" ref_strand="+" ref_description="SGN-E292800 [cLET-11-G3]">
      <seq>gagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71326" stop="68906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71026" g_stop="70985" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="401" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69206" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="496" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E292800" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71026" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGC</genome_strand>
        <mrna_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304879" ref_strand="+" ref_description="SGN-E304879 [cLEX-10-A24]">
      <seq>ctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="68907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70985" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="393" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69207" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="487" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E304879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAG</genome_strand>
        <mrna_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240513" ref_strand="+" ref_description="SGN-E240513 [cLED-21-N24]">
      <seq>atctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="371" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69207" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="465" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E240513" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAG</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E717854" ref_strand="+" ref_description="SGN-E717854 [FC02DG05]">
      <seq>cccctctttgttccttcatttgtgcgccaggtagaggatttttcaccaaaatggtggaacttggtgacaacttcaacatggttccctgactactggatgagccagaaccagggaaaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70203" stop="68917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69903" g_stop="69612" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69217" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="376" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E717854" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69903" e_stop="69612"/>
          <exon e_start="69300" e_stop="69217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCA</genome_strand>
        <mrna_strand>CCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAAAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCCTGACTACTGGATGAGCCAGAACCAGGGAAAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310967" ref_strand="+" ref_description="SGN-E310967 [cLEZ-17-N14]">
      <seq>tcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71322" stop="68920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="70985" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="397" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69220" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="478" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E310967" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCAT</genome_strand>
        <mrna_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207168" ref_strand="+" ref_description="SGN-E207168 [cLEC-30-E18]">
      <seq>ctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacaatgagttcaccaagatcccccattggtccacccaaatactttgagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="68923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70985" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="393" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69223" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="471" r_length="78" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E207168" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGC</genome_strand>
        <mrna_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACAATGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299899" ref_strand="+" ref_description="SGN-E299899 [cLEW-1-H12]">
      <seq>tctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71319" stop="68924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71019" g_stop="70985" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="394" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69224" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="471" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E299899" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71019" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAG</genome_strand>
        <mrna_strand>TCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E296039" ref_strand="+" ref_description="SGN-E296039 [cLET-27-J5]">
      <seq>gtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="68926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="395" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69226" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="470" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E296039" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282853" ref_strand="+" ref_description="SGN-E282853 [cLER-15-F9]">
      <seq>gtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71314" stop="68926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71014" g_stop="70985" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="389" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69226" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="464" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E282853" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71014" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</genome_strand>
        <mrna_strand>GTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282879" ref_strand="+" ref_description="SGN-E282879 [cLER-15-N7]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="68926"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69226" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="460" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E282879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E720772" ref_strand="+" ref_description="SGN-E720772 [FC11DC04]">
      <seq>ggcgattggcggccaatcggccgaattgatacgtgtaccagtccgtctctgtagctgaagaattaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcctttgtgcgccaggaagaggatttttcaccaaaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccataaccagggagaggaatatggtgctggcaatgatgttgctgatttgcttcctgaaaatattgacctcaatgttgatgaggacatcttgaacatggaagctcattttgaggaatttcttcaatcttccgaaagtgatcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattacaacattgagttcagcaaaatcccccattggtccaccctaatactttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="79" r_length="56" r_score="0.877"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.90"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="438" r_length="359" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69228" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="511" r_length="73" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E720772" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGA</genome_strand>
        <mrna_strand>AATTGATACGTGTACCAGTCCGTCTCTGTAGCTGAAGAA-TTAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCCTTTGTGCGCCAGGAAGAGGATTTTTCACCAAAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCATAACCAGGGAGAGGAATATGGTGCTGGCAATGATGTTGCTGATTTGCTTCCTGAAAATATTGACCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCATTTTGAGGAATTTCTTCAATCTTCCGAAAGTGATCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTACAACATTGAGTTCAGCAAAATCCCCCATTGGTCCACCCTAATACTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400838" ref_strand="+" ref_description="SGN-E400838 [PPC-2-E2]">
      <seq>tcgtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgataagaacattgaggtcaccaagatcccccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71322" stop="68947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71022" g_stop="70985" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="397" r_length="359" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69247" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="451" r_length="54" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E400838" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71022" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTG</genome_strand>
        <mrna_strand>TCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATAAGAACATTGAGGTCACCAAGATCCCCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243698" ref_strand="+" ref_description="SGN-E243698 [cLED-35-E19]">
      <seq>atctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcnccacgtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactgnatgagccanaaccacggagaggaatatggtgctggtgatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcactttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatgggttaccatctgaagcactgattaaaacattgagttcaccaagatcccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="68948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="371" r_length="359" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69300" g_stop="69248" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="424" r_length="53" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E243698" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATT</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCNCCACGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGNATGAGCCANAACCACGGAGAGGAATATGGTGCTGGTGATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCACTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GGTTACCATCTGAAGCACTGATTAAAACATTGAGTTCACCAAGATCCCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E706596" ref_strand="+" ref_description="SGN-E706596 [FA30BF05]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcacctgattagaacattgagttcacccaagatcccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="68949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69249" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="750" r_length="724" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E706596" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCA-CTGATTAGAACATTGAGTTCA-CCAAGATCCCCCAT</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACCTGATTAGAACATTGAGTTCACCCAAGATCCCCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282450" ref_strand="+" ref_description="SGN-E282450 [cLER-18-E19]">
      <seq>ctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71310" stop="69271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71010" g_stop="70985" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="385" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69271" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="415" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E282450" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71010" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACAT</genome_strand>
        <mrna_strand>CTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E325669" ref_strand="+" ref_description="SGN-E325669 [cTOC-15-C2]">
      <seq>gaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71305" stop="69271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71005" g_stop="70985" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="380" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69271" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="410" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E325669" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71005" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACAT</genome_strand>
        <mrna_strand>GAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291732" ref_strand="+" ref_description="SGN-E291732 [cLET-6-N19]">
      <seq>gtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="69282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="395" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="69282" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="414" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E291732" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="69282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACT</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E415124" ref_strand="+" ref_description="SGN-E415124 [STM-20-F10]">
      <seq>gtctctgtagctgaagacctaaaatctgttaaaaggcattcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattttgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggagtttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatgtcttgtaattaacctacagttagcacaaagataatgttcggtttgcatggtttgctgaagttttagtgcagaacctgtctggaaaaaccgaaaaaagggaggaacctttggtcaattagatctttatactataaacaatacaagtacggngatgaatccctgccggtgtcagaatttgtgtgagcatgttgaaacaagatgggaaaattcctactgcctggtcttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="69068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69368" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="645" r_length="610" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E415124" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATT-AATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCA-TTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTG--AAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGT-CTGGG--G-ATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTT</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGA-CCTAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTTGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAGTTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATGTCTTGTAATTAACCTACAGTTAGCACAAAGATAATGTTCGGTTTGCATGGTTTGCTGAAGTTTTAGTGCAGAACCTGTCTGGAAAAACCGAAAAAAGGGAGGAACCTTTGGTCAATTAGATCTTTATACTATAAACAATACAAGTACGGNGATGAATCCCTGCCGGTGTCAGAATTTGTGTGAGCATGTTGAAACAAGATGGGAAAATTCCTAC-TGCCTGGTCTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463468" ref_strand="+" ref_description="SGN-E463468 [cPRO-14-B8]">
      <seq>gtctctgtagctgaagacctaaaatctgttaaaaggcatcaattttgaaaaagcagtatggcacttgtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaatttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctgctaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgggcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgcctatgtcttgtaattaacctacagttagcacaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtctggaaaaaccgaaaaaagtgaggaacctttagtcgattagatctttatactataaactctacaagtccggggatgaatccctgctggtgtcggaatttgtgtgagcatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="69109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69409" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="603" r_length="568" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E463468" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTG--AAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGT-CTGGG--G-ATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGT</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGA-CCTAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAGTATGGCACTTGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGCTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGCCTATGTCTTGTAATTAACCTACAGTTAGCACAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTGGAAAAACCGAAAAAAGTGAGGAACCTTTAGTCGATTAGATCTTTATACTATAAACTCTACAAGTCCGGGGATGAATCCCTGCTGGTGTCGGAATTTGTGTGAGCATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475186" ref_strand="+" ref_description="SGN-E475186 [cSTB-39-D3]">
      <seq>gtctctgtagctgaagacctaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcatttgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggagtttcttcaatcttccgaaaatgggcaacaaggaatcaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatgtcttgtaattaacctacagttagcacaaagataatgttcggtttgcatggtttgctgaagttttagtgcagaacctgtctggaaaaaccgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71320" stop="69207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71020" g_stop="70985" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69499" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="507" r_length="472" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E475186" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71020" e_stop="70985"/>
          <exon e_start="69970" e_stop="69499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAA</genome_strand>
        <mrna_strand>GTCTCTGTAGCTGAAGA-CCTAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAGTTTCTTCAATCTTCCGAAAATGGGCAACAAGGAATCAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATGTCTTGTAATTAACCTACAGTTAGCACAAAGATAATGTTCGGTTTGCATGGTTTGCTGAAGTTTTAGTGCAGAACCTGTCTGGAAAAACCGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579793" ref_strand="+" ref_description="SGN-E579793 [86925]">
      <seq>gagatcgtctctgtagctgaagaacaaaaaatctgttaaaaggcatcaattttgaaaaagcaatatggcactagtttctggaggaagatcaacattgaatccaaatgcgcctctctttgttccttcattcgtgcgccaggtagaggacttttcaccggaatggtggaatttggtgacaacttcaacatggttccatgactattggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttctgaaaatgggcaacaaggaattaagtcatctctctatggtatcaatgcgatgccacaatatggttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71326" stop="69308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71026" g_stop="70985" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.95"/>
            <acceptor a_prob="0.862" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="401" r_length="359" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E579793" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71026" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG</genome_strand>
        <mrna_strand>GAGATCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAATTTTGAAAAAGCAATATGGCACTAGTTTCTGGAGGAAGATCAACATTGAATCCAAATGCGCCTCTCTTTGTTCCTTCATTCGTGCGCCAGGTAGAGGACTTTTCACCGGAATGGTGGAATTTGGTGACAACTTCAACATGGTTCCATGACTATTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCTGAAAATGGGCAACAAGGAATTAAGTCATCTCTCTATGGTATCAATGCGATGCCACAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243890" ref_strand="+" ref_description="SGN-E243890 [cLED-35-O12]">
      <seq>atctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatggtgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="69299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="371" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E243890" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGGTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319889" ref_strand="+" ref_description="SGN-E319889 [cTOB-12-I12]">
      <seq>tctgtagctgaagaacaaaaaatctgtttaaaggtattaattccgaaaaagcaatatggcattactttctggaggaagatcaacgttgaatacaaatgctcccctctttgttgctttatttgcgcgccaggtaaaggatatttcaccagaatggtgcaacttggtgacaacttaaacatggctccatgactactggatgagccacaaccagcgataggaatatggcgctggcaatgatgttgctgatttgcttactgacaatattgatctaaatgtcgatgaggacctcttgaacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71317" stop="69405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71017" g_stop="70985" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69705" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="299" r_length="266" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E319889" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71017" e_stop="70985"/>
          <exon e_start="69970" e_stop="69705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGG</genome_strand>
        <mrna_strand>TCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTCCGAAAAAGCAATATGGCATTACTTTCTGGAGGAAGATCAACGTTGAATACAAATGCTCCCCTCTTTGTTGCTTTATTTGCGCGCCAGGTAAAGGATATTTCACCAGAATGGTGCAACTTGGTGACAACTTAAACATGGCTCCATGACTACTGGATGAGCCACAACCAGCGATAGGAATATGGCGCTGGCAATGATGTTGCTGATTTGCTTACTGACAATATTGATCTAAATGTCGATGAGGACCTCTTGAACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290586" ref_strand="+" ref_description="SGN-E290586 [cLES-20-J9]">
      <seq>aaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="70272" stop="69430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69970" g_stop="69730" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="255" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E290586" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69970" e_stop="69730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAAT</genome_strand>
        <mrna_strand>GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249663" ref_strand="+" ref_description="SGN-E249663 [cLEF-56-H23]">
      <seq>ctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="69436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71018" g_stop="70985" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69736" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="269" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E249663" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71018" e_stop="70985"/>
          <exon e_start="69970" e_stop="69736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGAT</genome_strand>
        <mrna_strand>CTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E295899" ref_strand="+" ref_description="SGN-E295899 [cLET-27-G16]">
      <seq>aagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttgctgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggcgctggtaatgatgttgctgatttgcttcctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71307" stop="69446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71007" g_stop="70985" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69746" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="248" r_length="225" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E295899" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71007" e_stop="70985"/>
          <exon e_start="69970" e_stop="69746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGA</genome_strand>
        <mrna_strand>AAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGCTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGCGCTGGTAATGATGTTGCTGATTTGCTTCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371930" ref_strand="+" ref_description="SGN-E371930 [TUS-30-M18](-)">
      <seq>ttttttttaattagctctttgatggctggtcttcaatacaaattttttccaacagattttttcttcccaattcaaaaaacagttagtggagaaaacacatcaaagcaaaatctcttaatcaagattagaaataatgatgagtccttaattgaggaatcaaagggcaaaattgtcattaacaacaacaagaagaatctcaaagctatttcttcatcttcattagctttgatttctgtgccaaaacagaagaaagatcaagattaatcaactgattattcttttaatcatatagtaattaattgtatgattaagaataatcttgttctctttgctatcttttctcctatttttttttctttgagtttaataaatatttaggaggcttttgggaaaagttattagatttgtttgatgtattatataagtttgcaattcaataagacaggaacaatagtttctatgatcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="75239" stop="74171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74939" g_stop="74465" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E371930" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74939" e_stop="74465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATCATATCTATT</genome_strand>
        <mrna_strand>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGA-TTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286985" ref_strand="+" ref_description="SGN-E286985 [cLES-6-I12]">
      <seq>tttttttaattagctctttgatggctggtcttcaatacaaattttttccaacagattttttcttcccaattcaaaaaacagttagtggagaaaacacatcaaagcaaaatctcttaatcaagattagaaataatgatgagtccttaattgaggaatcaaagggcaaaattgtcattaacaacaacaagaagaatctcaaagctatttcttcatcttcattagctttgatttctgtgccaaaacagaagaaagatcaagattaatcaactgattattcttttaatcatatagtaattaattgtatgattaagaataatcttgttctctttgctatcttttctcctatttttttttctttgagtttaataaatatttaggaggcttttgggaaaagttattagatttgtttgatgtattatataagtttgcaattcaataagacaggaacaatagtttctatgatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="75238" stop="74171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74938" g_stop="74474" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="474"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E286985" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74938" e_stop="74474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</genome_strand>
        <mrna_strand>TTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGA-TTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E371931" ref_strand="+" ref_description="SGN-E371931 [TUS-30-M18]">
      <seq>tttttttaattagctctttgatggctggtcttcaatacaaattttttccaacagattttttcttcccaattcaaaaaacagttagtggagaaaacacatcaaagcaaaatctcttaatcaagattagaaataatgatgagtccttaattgaggaatcaaagggcaaaattgtcattaacaacaacaagaagaatctcaaagctatttcttcatcttcattagctttgatttctgtgccaaaacagaagaaagatcaagattaatcaactgattattcttttaatcatatagtaattaattgtatgattaagaataatcttgttctctttgctatcttttctcctatttttttttctttgagtttaataaatatttaggaggcttttgggaaaagttattagatttgtttgatgtattatataagtttgcaattcaataagacaggaacaatagtttctatgatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="75238" stop="74171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74938" g_stop="74474" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="474"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E371931" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74938" e_stop="74474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</genome_strand>
        <mrna_strand>TTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGA-TTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281085" ref_strand="+" ref_description="SGN-E281085 [cLER-7-M11]">
      <seq>tttttaattagctctttgatggctggtcttcaatacaaattttttccaacagattttttcttcccaattcaaaaaacagttagtggagaaaacacatcaaagcaaaatctcttaatcaagattagaaataatgatgagtccttaattgaggaatcaaagggcagaattgtcattaacaacaacaagaagaatctcaaagctatttcttcatcttcattagctttgatttctgtgccaaaacagaagaaagatcaagattaatcaactgattattcttttaatcatatagtaattaattgtatgattaagaataatcttgttctctttgctatcttttctcctattttttttctttgagtttaataaatatttaggaggcttttgggaaaagatattagattatgtttgatgtattatataagtttgcaattcaataagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="75236" stop="74195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74936" g_stop="74495" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="441" r_length="441" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E281085" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74936" e_stop="74495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACA</genome_strand>
        <mrna_strand>TTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAGAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTA-TTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGATATTAGATTATGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355122" ref_strand="+" ref_description="SGN-E355122 [cTOS-18-H18]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79854" stop="78524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79559" g_stop="78824" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E355122" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79559" e_stop="78824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACAG</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350936" ref_strand="+" ref_description="SGN-E350936 [cTOS-7-D2]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcancaaagagtaagagccagaattttgaaagtggccagttggttcttaagcgtatttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79854" stop="78564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79559" g_stop="78864" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="695" r_length="695" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E350936" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79559" e_stop="78864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTC</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCANCAAAGAGTAAGAGCCAG-AATTTTGAAAGTGGCCAGTTGGTTCTTAAGCGTATTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353644" ref_strand="+" ref_description="SGN-E353644 [cTOS-10-I24]">
      <seq>aaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79854" stop="78565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79559" g_stop="78865" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E353644" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79559" e_stop="78865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTT</genome_strand>
        <mrna_strand>AAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707410" ref_strand="+" ref_description="SGN-E707410 [FA32DF11]">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79917" stop="78578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79618" g_stop="78878" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E707410" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79618" e_stop="78878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCT</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243204" ref_strand="+" ref_description="SGN-E243204 [cLEE-2-O19]">
      <seq>aggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="85404" stop="86539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85704" g_stop="86239" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E243204" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85704" e_stop="86239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGATGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCTAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAGAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAGCACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577849" ref_strand="+" ref_description="SGN-E577849 [LE08AD09]">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="86244" stop="87229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86544" g_stop="86929" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E577849" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86544" e_stop="86929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254221" ref_strand="+" ref_description="SGN-E254221 [cLEG-27-E19]">
      <seq>ttgacttcaccacgaactctccttctccgtatctcgagagagtcgtaaagactcagtcttttatcaagcaagacaaccttaagagagacgtacaagtcatgaagttggaagaagaatccaaagtggattagaagacgtttccttattttattttatttatttatttatttatttccgttttttattttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="90755" stop="74119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90455" g_stop="90287" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90286" i_stop="90219" i_length="68">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90218" g_stop="90180" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="205" r_length="38" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E254221" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90455" e_stop="90287"/>
          <exon e_start="90218" e_stop="90180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTCATAGTCTTTTACCAAGCAAGACAACCTTAAGAGAGGCGTACAAGTCATGAAGTTGGAAGGAGAATCCAAAGTGGATTAGAAGACGTTTCTTTATTTTATTTCCGTATTTTATTTTGTAATGGGCATAAGCCCTTGTCATTTTCCTTTCCTTATTCCTCTTATATTTTATCTTGTAATGTTTAGACTAGGACAGGTGGCAAAATGGGTCGAAACACCCAAAAA</genome_strand>
        <mrna_strand>TTGACTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTC--AGTCTTTTATCAAGCAAGACAACCTTAAGAGAGACGTACAAGTCATGAAGTTGGAAGAAGAATCCAAAGTGGATTAGAAGACGTTTCCTTATTTTATTTTATTTATTTATTTA....................................................................TTTATTTC-CGTTTTTTATTTTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258812" ref_strand="+" ref_description="SGN-E258812 [cLEG-50-F8]">
      <seq>ttgacttcaccacgaactctccttctccgtatctcgagagagtcgtaaagactcagtcttttatcaagcaagacaaccttaagagagacgtacaagtcatgaagttggaagaagaatccaaagtggattagaagacgtttccttattttattttatttatttatttatttatttccgttttttattttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="90755" stop="74119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90455" g_stop="90287" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90286" i_stop="90219" i_length="68">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90218" g_stop="90180" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="205" r_length="38" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E258812" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90455" e_stop="90287"/>
          <exon e_start="90218" e_stop="90180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTCATAGTCTTTTACCAAGCAAGACAACCTTAAGAGAGGCGTACAAGTCATGAAGTTGGAAGGAGAATCCAAAGTGGATTAGAAGACGTTTCTTTATTTTATTTCCGTATTTTATTTTGTAATGGGCATAAGCCCTTGTCATTTTCCTTTCCTTATTCCTCTTATATTTTATCTTGTAATGTTTAGACTAGGACAGGTGGCAAAATGGGTCGAAACACCCAAAAA</genome_strand>
        <mrna_strand>TTGACTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTC--AGTCTTTTATCAAGCAAGACAACCTTAAGAGAGACGTACAAGTCATGAAGTTGGAAGAAGAATCCAAAGTGGATTAGAAGACGTTTCCTTATTTTATTTTATTTATTTATTTA....................................................................TTTATTTC-CGTTTTTTATTTTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260070" ref_strand="+" ref_description="SGN-E260070 [cLEG-52-H7]">
      <seq>ttgacttcaccacgaactctccttctccgtatctcgagagagtcgtaaagactcagtcttttatcaagcaagacaaccttaagagagacgtacaagtcatgaagttggaagaagaatccaaagtggattagaagacgtttccttattttattttatttatttatttatttatttccgttttttattttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="90755" stop="74119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90455" g_stop="90287" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90286" i_stop="90219" i_length="68">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90218" g_stop="90180" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="205" r_length="38" r_score="0.462"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E260070" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>208</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90455" e_stop="90287"/>
          <exon e_start="90218" e_stop="90180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTCATAGTCTTTTACCAAGCAAGACAACCTTAAGAGAGGCGTACAAGTCATGAAGTTGGAAGGAGAATCCAAAGTGGATTAGAAGACGTTTCTTTATTTTATTTCCGTATTTTATTTTGTAATGGGCATAAGCCCTTGTCATTTTCCTTTCCTTATTCCTCTTATATTTTATCTTGTAATGTTTAGACTAGGACAGGTGGCAAAATGGGTCGAAACACCCAAAAA</genome_strand>
        <mrna_strand>TTGACTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTC--AGTCTTTTATCAAGCAAGACAACCTTAAGAGAGACGTACAAGTCATGAAGTTGGAAGAAGAATCCAAAGTGGATTAGAAGACGTTTCCTTATTTTATTTTATTTATTTATTTA....................................................................TTTATTTC-CGTTTTTTATTTTGTAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744655" ref_strand="+" ref_description="SGN-E744655 [GI|438121]">
      <seq>gccgagctttgtaacgtgggcttgtaacccgagtgggggcaacaatgtggtggaatgttgggtccatcttgatggatgggcttgaagggctaatgttctggcctgccctgtccaagcacagagttgggtcaagtggtctatacgaaagtatagccacttggcctttagagtgggatggactgcgtgaggctggtttcacagagcaacgactagtccccgctctgtgcagtggaaggatcacgggctagtgctctttgagtcctaacaaaaacctgataggttgcctaattaaaccatcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="97807" stop="96903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97507" g_stop="97203" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E744655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97507" e_stop="97203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATAGGCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</genome_strand>
        <mrna_strand>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATA-GCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731793" ref_strand="+" ref_description="SGN-E731793 [LA28AH01]">
      <seq>ctctactctggagctgcaaaaggcagcaaatcaaggaagacggtgcacttgggaaaaactctcagccattaaagctaactgtggaattgagcttgcacttgatgaatgtgttgctattctgaatcacatgcgtagactgaaaaggagtgccgagagagcggctgctgcttctcacggcttgtcaagcactgtcagatttaatgcttccagaagaattccttcttggaactgcattgcacgagagaattcaacaggttcccttgaagactttcttgcggatgttgctgcttcacatcatcaaggaggcagtggttccggcgcacataccaccagaaattggcgaacacaccggagcgcacatgatggcagtgacagcgagtccgaaaatgtggaccttaactcttggacaagatctggtggtcctctgatgaggacaacatctgctgataagtttatcgactttgtccagaacttggagattggttcacgattgaacaaaggattgactattgacctcaacaatctcgttcctcagatggctggtagagacctgttctccccgagcccaagggtatcaactccagatagaacttcagacaccgaatttgatcaaagagacttcagtattagagtccccgcgggtagttcaagcattatggtaggtgaaggtgaccttctacagccagaaaggactaacaacggtattgtcttcaacgtggtaagaaaaggagacgtaaccccatcgaatagaagcctcgattcagaaaataacagttctgtgcaggatacagttgctgagtgtgtgcaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="107015" stop="108428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107315" g_stop="108128" g_length="814"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="814" r_length="814" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E731793" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107315" e_stop="108128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATACAGTTGCTGAGTGTGTGCAACTTGAC</genome_strand>
        <mrna_strand>CTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATACAGTTGCTGAGTGTGTGCAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E746528" ref_strand="+" ref_description="SGN-E746528 [GI|47104222]">
      <seq>atcattttctctcactacgaagtttcctggaaattcaccatggctttctaccatttaatctccatcttcttcctctatctcatacactcatcttttcttgtttttttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgtggataaaaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcatttcggtgaaaaagtgtgtttgttttaagggtggggatttgattagaatctaatcaacggctaggattgatccattttggaggttgtaccaaagttattgatctcgtaaatacatgtgagaacaaattcctcccttttttacccctgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110267" stop="111832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110567" g_stop="111544" g_length="978"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="978" r_length="978" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E746528" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>978</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110567" e_stop="111544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTG-TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAAT</genome_strand>
        <mrna_strand>ATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTC-ATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549233" ref_strand="+" ref_description="SGN-E549233 [TUS-68-I12]">
      <seq>atcattttctctcactacgaagtttccctggaaatcaccatggctttctaccatttaatctccatcttcttcctctatctcatacactcatctttttcttgttttttcattctccatttcactttctcatcctccatagctatgaagctccctcaaaacttccccaaaagctcttcaactacaaaaaactcgatcatttccagatctcaaaactcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110267" stop="111243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110567" g_stop="110943" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E549233" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110567" e_stop="110943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATC-TTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGAC</genome_strand>
        <mrna_strand>ATCATTTTCTCTCACTACGAAGTTTCCCTGGAAATCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCCTCAAAACTTCCCC-AAAAGCTCTTCAACTAC-AAAAAACTCGATC-ATTTCCAGATCTCAAAACTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACC-ACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311444" ref_strand="+" ref_description="SGN-E311444 [cLEZ-18-E6]">
      <seq>tcattttctctcactacgaagtttcctggaaattcaccatggctttctaccatttaatctccatcttcttcctctatctcatacactcatcttttcttgtttttttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110268" stop="111367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110568" g_stop="111067" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E311444" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110568" e_stop="111067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTG-TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTA</genome_strand>
        <mrna_strand>TCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731740" ref_strand="+" ref_description="SGN-E731740 [LA28AB12]">
      <seq>cgcttagtttcctggaaattcaccatggctttctaccatttaatctccatcttcttcctctatctcatacactcatcttttcttgttttttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgtggataaaaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcaatttcggtgaaaaagtgttgtttgttttaagggtgggggatttgattaaaatctaatcaacggctaagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110287" stop="111750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110582" g_stop="111450" g_length="869"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E731740" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110582" e_stop="111450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTG-TGTTTGTTTTAAGGGT-GGGGATTTGATTAGAATCTAATCAACGGCTAGGATT</genome_strand>
        <mrna_strand>CGCTTAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTTGTTTGTTTTAAGGGTGGGGGATTTGATTAAAATCTAATCAACGGCTAAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554035" ref_strand="+" ref_description="SGN-E554035 [cTSC-3-A15]">
      <seq>aattcaccatgagctttctaccatttaatctccatcttcttcctctatctcatacactcatcttttcttgttttttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacggggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110298" stop="111563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110598" g_stop="111263" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E554035" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110598" e_stop="111263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCACCATG-GCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGAC-GGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGT</genome_strand>
        <mrna_strand>AATTCACCATGAGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268749" ref_strand="+" ref_description="SGN-E268749 [cLEM-16-F17]">
      <seq>ttttttcattctccatttcactttctcatcctccatagctatgaagctcctaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggttagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110367" stop="111480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110667" g_stop="111180" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E268749" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110667" e_stop="111180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACG</genome_strand>
        <mrna_strand>TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCT-AAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTTAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E268711" ref_strand="+" ref_description="SGN-E268711 [cLEM-16-H1]">
      <seq>ttttttcattctccatttcactttctcatcctccatagctatgaagctcctaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggttagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110367" stop="111476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110667" g_stop="111176" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E268711" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110667" e_stop="111176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGAT</genome_strand>
        <mrna_strand>TTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCT-AAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTTAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E461401" ref_strand="+" ref_description="SGN-E461401 [cPRO-8-G20]">
      <seq>cttcattctccatttcactttttcatcctccataacaatgaagctcctcaaaaacctccccaaaaagctcttcaactacaaaaaaactcgatccatttccagatctcaaacctcatccttcggatcctcctccgattccgattcccatccccatccccatcgcgggtttagaaaacccaccggatcatccactccaaccagcgtcttacccaacgaaatctccgctgcggaagtaggttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcggaactgaaccgccgagtaaagaggaactcatgttgttgcttgaggaagttgatgtaaacggagatggatgtattagtttacaggaattcggagctattagctcggcgtttggaccgccggcgtgtgattccgagctgagagatgcttttgatttcttcgacgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaaacagatcggagattcacggtgcacgttagaggagtgccggggtatgataagaggtgtggataaaaatggtgatgggtttgtatgttttgagggactttgtgttatgatgcaacagcagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110371" stop="111626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110670" g_stop="111327" g_length="658"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E461401" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110670" e_stop="111327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCC-T-----TCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCAT</genome_strand>
        <mrna_strand>CTTCATTCTCCATTTCACTTTTTCATCCTCCATAACAATGAAGCTCCTCAAAAACCTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCCATTTCCAGATCTCAAACCTCATCCTTCGGATCCTCCTCCGATTCCGATTCCCATCCCCATCCCCATCGCGGGTTTAGAAAACCCACCGGATCATCCACTCCAACCAGCGTCTTACCCAACGAAATCTCCGCTGCGGAAGTAGGTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGAACTGAACCGCCGAGTAAAGAGGAACTCATGTTGTTGCTTGAGGAAGTTGATGTAAACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCGGCGTTTGGACCGCCGGCGTGTGATTCCGAGCTGAGAGATGCTTTTGATTTCTTCGACGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAAACAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGGGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGTTTTGAGGGACTTTGTGTTATGATGCAACAGCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E213197" ref_strand="+" ref_description="SGN-E213197 [cLEC-72-J11]">
      <seq>ttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110371" stop="111531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110671" g_stop="111231" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E213197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110671" e_stop="111231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACG</genome_strand>
        <mrna_strand>TTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E475748" ref_strand="+" ref_description="SGN-E475748 [cSTB-41-L13]">
      <seq>atttcactttctcatcctccataacaatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatccatttccagatctcaaacctcatccttcggatcctcctccgattccgattcccatccccatcgcgggtttagaaaacccaccggatcatctactccaaccagcgtcttacccaacgaaatctccgctgcggaagtaggttacgctgagctaatccatgcgtttcacatgatggacactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcggaactgaaccgccgagtaaggaggaactcatgttgttgcttgaagaagttgatgtaaacggagatggatgtattagtttacaggaattcggagctattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110381" stop="111395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110681" g_stop="111095" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E475748" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110681" e_stop="111095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAG</genome_strand>
        <mrna_strand>ATTTCACTTTCTCATCCTCCATAACAATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCCATTTCCAGATCTCAAACCTCATCCTTCGGATCCTCCTCCGATTCCGATTCCCATCCCCATCGCGGGTTTAGAAAACCCACCGGATCATCTACTCCAACCAGCGTCTTACCCAACGAAATCTCCGCTGCGGAAGTAGGTTACGCTGAGCTAATCCATGCGTTTCACATGATGGACACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGAACTGAACCGCCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTAAACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E288809" ref_strand="+" ref_description="SGN-E288809 [cLES-17-M14]">
      <seq>catcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgtggataaaaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110393" stop="111635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110693" g_stop="111335" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E288809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110693" e_stop="111335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTG</genome_strand>
        <mrna_strand>CATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409708" ref_strand="+" ref_description="SGN-E409708 [PPI-14-J8]">
      <seq>tgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatccatttccagatctcaaacctcatccttcggatcctcctccgattccgattcccatccccatcgcgggtttagaaaacccaccggatcatctactccaaccagcgtcttacccaacgaaatctccgctgcggaagtaggttacgctgagctaatccatgcgtttcacatgatggacactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcggaactgaaccgccgagtaaggaggaactcatgttgttgcttgaagaagttgatgtaaacggagatggatgtattagtttacaggaattcggagctattagctcggcgttcggaccgccggcgtgtgattccgagctgagagatgcttttgatttcttcgacgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttagacagatcggagattcacggtgcacgttagaagagtgccggcgtatgataagaggtgtagataaaacggtgatgggtttgtatgcttcgaggactttgtggtatgatggacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110408" stop="111625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110708" g_stop="111325" g_length="618"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="615" r_length="615" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E409708" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110708" e_stop="111325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGC</genome_strand>
        <mrna_strand>TGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCCATTTCCAGATCTCAAACCTCATCCTTCGGATCCTCCTCCGATTCCGATTCCCATCCCCATCGCGGGTTTAGAAAACCCACCGGATCATCTACTCCAACCAGCGTCTTACCCAACGAAATCTCCGCTGCGGAAGTAGGTTACGCTGAGCTAATCCATGCGTTTCACATGATGGACACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGAACTGAACCGCCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTAAACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCGGCGTTCGGACCGCCGGCGTGTGATTCCGAGCTGAGAGATGCTTTTGATTTCTTCGACGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGACAGATCGGAGATTCACGGTGCACGTTAGAAGAGTGCCGGCGTATGATAAGAGGTGTAGAT-AAAACGGTGATGGGTTTGTATGCTTCGAGGACTT-TGTGGTATGATGG-ACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206683" ref_strand="+" ref_description="SGN-E206683 [cLEC-31-A19]">
      <seq>aaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctgctccgattccgattcccttcctcatggcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacagtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtcaggaggaactcatgttgctgcttgaagaagttgatgttgacggagatggatgtattagcttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110419" stop="111489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110719" g_stop="111189" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E206683" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110719" e_stop="111189"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAG</genome_strand>
        <mrna_strand>AAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTGCTCCGATTCCGATTCCCTTCCTCATGGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACAGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTCAGGAGGAACTCATGTTGCTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGCTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577922" ref_strand="+" ref_description="SGN-E577922 [LE08BD08]">
      <seq>ctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgtggataaaaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcaatttcggtgaaaaagtgtgtttgttttaagggtggggatttgattagaatctaatcaacggctaggattgatccattttggaggttgtaccaaagttattgatctcgtaaatacatgtgagaacaaattcctcccttttttacccctgaaaccgagatggaattggcttatgcctaatatcaatatcacacgtttacgtaaaaaaaaaaaaaaaaaagacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110585" stop="111882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110885" g_stop="111578" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="694" r_length="694" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="697" polyA_stop="716"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E577922" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>694</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110885" e_stop="111578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</genome_strand>
        <mrna_strand>CTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAGATGGAATTGGCTTATGCCTAATATCAATATCACACGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219474" ref_strand="+" ref_description="SGN-E219474 [cLEL-11-I5](-)">
      <seq>aaaatggtgatgggtttgtatgcttcaaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcaatttcggtgaaaaagtgtgtttgttttaagggtggggatttgattagaatctaatcaacggctaggattgatccattttggaggttgtaccaaagttattgatctcgtaaatacatgtgagaacaaattcctcccttttttacccctgaaaccgaaatggaattggcttatgcctaatatcaatatcaaacgtttccgtccaaaaagaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110969" stop="111880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111269" g_stop="111578" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="315" polyA_stop="333"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E219474" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219474" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111269" e_stop="111578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</genome_strand>
        <mrna_strand>AAAATGGTGATGGGTTTGTATGCTTCAAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E219224" ref_strand="+" ref_description="SGN-E219224 [cLEL-11-I5](-)">
      <seq>aaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcaatttcggtgaaaaagtgtgtttgttttaagggtggggatttgattagaatctaatcaacggctaggattgatccattttggaggttgtaccaaagttattgatctcgtaaatacatgtgagaacaaattcctcccttttttacccctgaaaccgaaatggaattggcttatgcctaatatcaatatcaaacgtttacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110970" stop="111882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111270" g_stop="111578" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="312" polyA_stop="332"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E219224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E219224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111270" e_stop="111578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</genome_strand>
        <mrna_strand>AAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347153" ref_strand="+" ref_description="SGN-E347153 [cTOF-25-O15]">
      <seq>aacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="122393" stop="121443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122093" g_stop="121742" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E347153" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122093" e_stop="121742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTACAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</genome_strand>
        <mrna_strand>AACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E336267" ref_strand="+" ref_description="SGN-E336267 [cTOE-10-L10]">
      <seq>acaggtagtaatacctgtgaactcggtagggtatgaggtttttttgttgatgttacaatttttgtatagtggacaagtttcaattgtgccacaaaaacatgaaccaaggcctaattgtggtgaaagaaactgttggcatacacattgcacatcagccgttgatcttgcacttgatacactctcagccgctagatcttttggtgttgaacaacttgctttgcttactcagaagcaattgacaagcatggtagagaaaacttcaattgaggatgtgatgaaagttttagttgcttcaagaaaacaagacatgcctcaactttggactacttgttctcatttggttgcaaaatcaggccttccacctgaaatcctagcaaaacaccttcccatcgacgttgtcgcgaaaatcgaggaaattcgcctaaaaacttcattagcgcgaagatccttgatctctcaccatcaccagcacgacctaagttcgacctcggagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="133846" stop="135408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134146" g_stop="134374" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134375" i_stop="134841" i_length="467">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134842" g_stop="135108" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="496" r_length="267" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-E336267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134146" e_stop="134374"/>
          <exon e_start="134842" e_stop="135108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAGGTTTAATTTAACTTTATCGGATTGTTCCGACTCTTTGAAAATATTTGTCGAACACCATGTGGTTTCTAACGTGTTTTTAAAGCGTTCGAGCAATATTTAGTGAAATTCTTGTTGTTAGATGTGTCATTTCACTTGATTTCATGTTAAAGATTTTGAGTTTCTTGAGTCATATCTTTCAAGAGTGATTTATATATCCCCAATCAAATCCACTTTCCTAATTTGGTTTCATGAACCAATATTAAAAAATGGATTTATTTGATGTTACCCTATATATAATCAAGATTATGCAAAAAAAAAAAAACATATATCAATTGTCTTTTTGATTGGAATGATAAAACTTTCTAAATATGTCAATGTATATGAAAAACTAAATCACATTTAGGGACATTTGTGAGTCTTTGTTTTTTCATTTAATTTTGTTCGACTTGTTTGAGACTGAAGCATAGTTATTGTGTTTAATTCCGCAGAAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTC</genome_strand>
        <mrna_strand>ACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207052" ref_strand="+" ref_description="SGN-E207052 [cLEC-30-E20]">
      <seq>ctatggtaatttcacgagaggaagaaactcaagacatagacgtagtttgtttggttcgatatgagttagaccagggatcgcacctttgaataagaaatcggaagttagggtttgtagaatgtcgagtggagtgatcccatccatcgttctgacatttggatctgcgtggtggtctagtaggactgccaccatgtcgggtgacaccatttccgatgcaatgtggaggggggttttgccagctggaccggccgggtggttcacgttggctgcaccgagctcgagtaacgctttcacaacctcccggctacaattctcgaccgcgtagtgtaacgcgatcgattcatcgagatttagtccttctcccatgaccataagtttgaccaattccacgtcggatgagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="135826" stop="134843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135522" g_stop="135143" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="404" r_length="380" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E207052" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135522" e_stop="135143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTA</genome_strand>
        <mrna_strand>AAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572063" ref_strand="+" ref_description="SGN-E572063 [31157]">
      <seq>ctttgacaccatatattatactttaatttatcattgccatttttgtttcataatgatcataaacaattttgttatctatctagtaaaagagaaattagatagataagcaaaagatagaaaatactcatcatgaatatggacgatacatcgacgatgggtcaaatccactatgcctattttgtttattgtgactattatcatgatcatcctcgttcgtcattctgttgcaccccatctgttgtgaaatcgaagtaccagcacctagattcaaatacaccatcctcgagtctagattgaggttattacctcccacattggtcgtgttgctcgcgctagaaccatgatcttcgttgtttataggttggaacatcgcggtggaagatggaacgttgtttgtattttcttcctctcgcgaaattaccatcgcggccgattgaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="136264" stop="135221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135965" g_stop="135520" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-E572063" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135965" e_stop="135520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGACCATCATATATAATATTTTAATTTCCCATTCCCAATTTTGTTTCATAATGATAATAGACAATTTTGTGATCTATCTAGTAAAAGAGAAATTAATTAGATAGATAAGCAAGAGAAAGAAAATACTCATCATGAATATGGACGATACATCGACGATGGGTCAAATTCACCATGCCTATTTTGTTTATTGTGACTATTATCATGATCATCCTGGTTCGTCATTCTGTTGCACCCTATTTGTTGTGCAATCGAAGTACCAGCGCCTAGATTCAAATACACCATTCTCGAGTCTAGATTGAGGTTATTACCTCCCACATTGGTCGTGTTGCTCGTGCTAGAACCATGATCTTCGTTGTTTATAGGTTGGAATATCGCGGTGGAAGATGGGACGTTGTTTGTAGTTTCTTCCTCTCGTGAAATTACCATAGCCGCGGATTGAACTAA</genome_strand>
        <mrna_strand>CTTTGACACCATATATTATACTTTAATTTATCATTGCCATTTTTGTTTCATAATGATCATAAACAATTTTGTTATCTATCTAGTAAAAGAGAAATT-A---GATAGATAAGCAAAAGATAGAAAATACTCATCATGAATATGGACGATACATCGACGATGGGTCAAATCCACTATGCCTATTTTGTTTATTGTGACTATTATCATGATCATCCTCGTTCGTCATTCTGTTGCACCCCATCTGTTGTGAAATCGAAGTACCAGCACCTAGATTCAAATACACCATCCTCGAGTCTAGATTGAGGTTATTACCTCCCACATTGGTCGTGTTGCTCGCGCTAGAACCATGATCTTCGTTGTTTATAGGTTGGAACATCGCGGTGGAAGATGGAACGTTGTTTGTATTTTCTTCCTCTCGCGAAATTACCATCGCGGCCGATTGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>393</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2652" PGL_stop="4110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2652" e_stop="4110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="2652" e_stop="4110" e_length="1459"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2652" stop="3146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2653" stop="3119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2655" stop="3422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2656" stop="3381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2656" stop="3143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2657" stop="3291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2659" stop="3302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2659" stop="3153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2661" stop="3376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2669" stop="3444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E410910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2895" stop="3527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3315" stop="3851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3320" stop="3827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3320" stop="3724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3527" stop="4110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3653" stop="4109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3686" stop="4098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3729" stop="4098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224670" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATAATTCGACTCAAA</gDNA_template>
            <first_frame> K  L  C  S  S  M  A  K  L  T  N  H  E  V  A  I  V  M  I  P  L  P  A  Q  G  H  L  N  Q  L  L  H  L  S  R  L  I  S  A  Y  N  L  P  L  H  F  A  G  A  A  V  H  L  R  Q  A  K  N  R  I  H  G  W  N  P  V  S  T  S  T  V  K  F  H  E  L  P  I  P  N  Y  E  T  P  L  P  N  P  N  S  T  T  K  F  P  S  Q  L  M  P  S  F  H  A  T  I  H  L  R  H  P  I  T  S  L  L  Q  E  L  S  R  N  Y  R  R  V  I  V  I  Y  D  S  L  I  A  W  V  L  Q  D  T  P  S  I  P  N  V  E  C  Y  S  F  R  S  I  S  V  F  S  I  Y  S  W  D  K  S  S  V  T  P  E  F  T  E  Y  S  R  V  Q  F  E  F  R  E  I  V  N  S  G  N  L  Y  N  S  C  Y  E  I  E  G  L  Y  L  D  F  V  A  K  E  K  S  A  R  N  K  Q  W  A  I  G  P  L  N  P  V  K  Q  F  D  K  K  N  S  L  I  S  H  K  C  M  N  W  L  D  E  Q  E  P  N  S  V  I  F  V  S  F  G  T  T  T  T  F  S  D  E  Q  I  K  E  L  A  I  G  L  E  K  S  E  Q  R  F  I  W  V  L  R  E  A  D  K  G  D  I  F  T  G  E  S  R  E  V  E  L  P  E  G  Y  E  E  R  V  G  K  R  G  V  I  V  R  D  W  A  P  Q  L  E  I  L  G  H  E  S  T  G  G  F  M  S  H  C  G  W  N  S  C  M  E  S  I  S  M  G  V  P  I  L  A  W  P  M  H  S  D  Q  P  R  N  A  V  L  V  T  E  V  L  K  I  G  V  E  L  R  D  W  A  K  R  D  E  L  V  S  S  V  A  V  A  E  C  V  K  R  L  M  D  S  A  E  G  D  E  M  R  Q  R  V  M  E  L  S  K  S  V  V  D  G  G  G  S  G  R  E  M  A  S  F  I  A  H  I  T  R  *  *  K  T  I  L  T  R  F  Y  S  F  *  T  I  V  V  S  L  L  C  Q  L  E  V  A  I  D  G  L  H  L  *  R  S  S  V  C  Y  Y  N  S  T  Q  </first_frame>
            <second_frame>  S  F  V  L  P  W  R  N  S  P  I  M  K  L  P  *  *  *  F  H  Y  Q  H  K  A  I  *  T  N  S  S  T  S  P  A  S  S  P  P  I  T  S  H  S  T  S  P  E  Q  P  Y  T  S  V  K  Q  K  I  V  S  M  A  G  T  Q  S  P  P  P  P  S  N  S  T  N  S  Q  S  Q  I  T  K  P  L  F  L  I  Q  I  P  P  P  N  S  L  P  N  *  C  R  L  S  T  P  R  F  I  F  V  T  R  L  L  P  F  Y  K  N  S  P  E  I  T  E  E  *  L  L  F  T  I  L  *  *  L  G  F  F  K  I  H  L  L  Y  Q  T  L  S  V  T  A  F  V  A  F  Q  F  F  R  S  T  L  G  I  N  P  V  *  R  R  S  L  Q  S  I  A  E  Y  N  L  S  S  E  K  L  L  I  L  V  I  Y  T  I  L  A  M  K  L  K  D  C  I  L  I  L  *  Q  K  R  K  V  R  V  I  N  N  G  L  L  D  H  *  T  L  *  N  S  L  I  K  K  I  H  *  F  R  I  N  V  *  I  G  L  M  N  K  N  Q  I  L  *  Y  S  C  L  S  G  R  R  L  R  F  L  M  N  K  L  R  N  *  Q  L  G  W  R  K  V  N  R  D  L  Y  G  Y  *  G  K  L  I  K  V  T  F  L  Q  G  K  V  E  K  L  S  Y  Q  K  G  M  K  R  E  W  G  K  E  G  L  *  *  E  I  G  H  H  N  W  R  Y  W  D  T  S  R  R  V  D  S  *  A  I  A  G  G  I  R  V  W  R  V  Y  Q  W  E  Y  Q  Y  *  L  G  Q  C  I  Q  I  N  Q  E  M  Q  F  W  *  L  K  C  *  K  L  E  *  S  *  G  I  G  Q  R  E  M  S  W  *  V  Q  L  Q  L  Q  N  V  L  R  D  *  W  I  L  Q  K  E  M  R  *  D  R  G  L  W  S  *  V  N  Q  W  W  M  V  V  A  V  A  E  R  W  L  L  S  L  P  I  L  R  D  N  K  R  R  F  *  L  D  F  I  P  F  K  R  L  *  *  V  C  C  A  N  L  K  W  L  L  M  G  Y  I  Y  K  E  V  Q  C  V  T  I  I  R  L  K </second_frame>
            <third_frame>   A  L  F  F  H  G  E  T  H  Q  S  *  S  C  H  S  N  D  S  T  T  S  T  R  P  F  K  P  T  P  P  P  L  P  P  H  L  R  L  *  P  P  T  P  L  R  R  S  S  R  T  P  P  S  S  K  K  S  Y  P  W  L  E  P  S  L  H  L  H  R  Q  I  P  R  T  P  N  P  K  L  R  N  P  S  S  *  S  K  F  H  H  Q  I  P  F  P  I  D  A  V  F  P  R  H  D  S  S  S  S  P  D  Y  F  P  F  T  R  T  L  Q  K  L  Q  K  S  N  C  Y  L  R  F  F  N  S  L  G  S  S  R  Y  T  F  Y  T  K  R  *  V  L  Q  L  S  *  H  F  S  F  F  D  L  L  L  G  *  I  Q  C  N  A  G  V  Y  R  V  *  Q  S  T  I  *  V  Q  R  N  C  *  F  W  *  F  I  Q  F  L  L  *  N  *  R  I  V  S  *  F  C  S  K  R  E  K  C  A  *  *  T  M  G  Y  W  T  I  K  P  C  E  T  V  *  *  K  K  F  I  N  F  A  *  M  Y  E  L  A  *  *  T  R  T  K  F  C  D  I  R  V  F  R  D  D  D  Y  V  F  *  *  T  N  *  G  I  S  N  W  V  G  E  K  *  T  E  I  Y  M  G  I  E  G  S  *  *  R  *  H  F  Y  R  G  K  *  R  S  *  V  T  R  R  V  *  R  E  S  G  E  K  R  G  Y  S  E  R  L  G  T  T  I  G  D  I  G  T  R  V  D  G  W  I  H  E  P  L  R  V  E  F  V  Y  G  E  Y  I  N  G  S  T  N  I  S  L  A  N  A  F  R  S  T  K  K  C  S  F  G  N  *  S  V  E  N  W  S  R  V  E  G  L  G  K  E  R  *  V  G  E  F  S  C  S  C  R  M  C  *  E  I  D  G  F  C  R  R  R  *  D  E  T  E  G  Y  G  V  E  *  I  S  G  G  W  W  W  Q  W  Q  R  D  G  F  F  H  C  P  Y  Y  E  I  I  K  D  D  F  N  *  I  L  F  L  L  N  D  C  S  E  F  V  V  P  T  *  S  G  Y  *  W  A  T  F  I  K  K  F  S  V  L  L  *  F  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2652" stop="3980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLCSSMAKLTNHEVAIVMIPLPAQGHLNQLLHLSRLISAYNLPLHFAGAAVHLRQAKNRIHGWNPVSTSTVKFHELPIPNYETPLPNPNSTTKFPSQLMPSFHATIHLRHPITSLLQELSRNYRRVIVIYDSLIAWVLQDTPSIPNVECYSFRSISVFSIYSWDKSSVTPEFTEYSRVQFEFREIVNSGNLYNSCYEIEGLYLDFVAKEKSARNKQWAIGPLNPVKQFDKKNSLISHKCMNWLDEQEPNSVIFVSFGTTTTFSDEQIKELAIGLEKSEQRFIWVLREADKGDIFTGESREVELPEGYEERVGKRGVIVRDWAPQLEILGHESTGGFMSHCGWNSCMESISMGVPILAWPMHSDQPRNAVLVTEVLKIGVELRDWAKRDELVSSVAVAECVKRLMDSAEGDEMRQRVMELSKSVVDGGGSGREMASFIAHITR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4000" PGL_stop="3509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4000" e_stop="3509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="4000" e_stop="3509" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4000" stop="3509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207210" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTAGTTAAAATCGTCTTTTATTATCTCGTAATATGGGCAATGAAAGAAGCCATCTCTCTGCCACTGCCACCACCATCCACCACTGATTTACTCAACTCCATAACCCTCTGTCTCATCTCATCTCCTTCTGCAGAATCCATCAATCTCTTAACACATTCTGCAACTGCAACTGAACTCACCAACTCATCTCTCTTTGCCCAATCCCTCAACTCTACTCCAATTTTCAACACTTCAGTTACCAAAACTGCATTTCTTGGTTGATCTGAATGCATTGGCCAAGCTAATATTGGTACTCCCATTGATATACTCTCCATACACGAATTCCACCCGCAATGGCTCATGAATCCACCCGTCGACTCGTGTCCCAATATCTCCAATTGTGGTGCCCAATCTCTCACTATAACCCCTCTTTTCCCCACTCTCTCTTCATACCCTTCTGGTAACTCAACTTCTCTACTTTCCCCTGTAAAAATGTCACCTTTATCAGCTTCC</gDNA_template>
            <first_frame> L  V  K  I  V  F  Y  Y  L  V  I  W  A  M  K  E  A  I  S  L  P  L  P  P  P  S  T  T  D  L  L  N  S  I  T  L  C  L  I  S  S  P  S  A  E  S  I  N  L  L  T  H  S  A  T  A  T  E  L  T  N  S  S  L  F  A  Q  S  L  N  S  T  P  I  F  N  T  S  V  T  K  T  A  F  L  G  *  S  E  C  I  G  Q  A  N  I  G  T  P  I  D  I  L  S  I  H  E  F  H  P  Q  W  L  M  N  P  P  V  D  S  C  P  N  I  S  N  C  G  A  Q  S  L  T  I  T  P  L  F  P  T  L  S  S  Y  P  S  G  N  S  T  S  L  L  S  P  V  K  M  S  P  L  S  A  S </first_frame>
            <second_frame>  *  L  K  S  S  F  I  I  S  *  Y  G  Q  *  K  K  P  S  L  C  H  C  H  H  H  P  P  L  I  Y  S  T  P  *  P  S  V  S  S  H  L  L  L  Q  N  P  S  I  S  *  H  I  L  Q  L  Q  L  N  S  P  T  H  L  S  L  P  N  P  S  T  L  L  Q  F  S  T  L  Q  L  P  K  L  H  F  L  V  D  L  N  A  L  A  K  L  I  L  V  L  P  L  I  Y  S  P  Y  T  N  S  T  R  N  G  S  *  I  H  P  S  T  R  V  P  I  S  P  I  V  V  P  N  L  S  L  *  P  L  F  S  P  L  S  L  H  T  L  L  V  T  Q  L  L  Y  F  P  L  *  K  C  H  L  Y  Q  L   </second_frame>
            <third_frame>   S  *  N  R  L  L  L  S  R  N  M  G  N  E  R  S  H  L  S  A  T  A  T  T  I  H  H  *  F  T  Q  L  H  N  P  L  S  H  L  I  S  F  C  R  I  H  Q  S  L  N  T  F  C  N  C  N  *  T  H  Q  L  I  S  L  C  P  I  P  Q  L  Y  S  N  F  Q  H  F  S  Y  Q  N  C  I  S  W  L  I  *  M  H  W  P  S  *  Y  W  Y  S  H  *  Y  T  L  H  T  R  I  P  P  A  M  A  H  E  S  T  R  R  L  V  S  Q  Y  L  Q  L  W  C  P  I  S  H  Y  N  P  S  F  P  H  S  L  F  I  P  F  W  *  L  N  F  S  T  F  P  C  K  N  V  T  F  I  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4000" stop="3740"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVKIVFYYLVIWAMKEAISLPLPPPSTTDLLNSITLCLISSPSAESINLLTHSATATELTNSSLFAQSLNSTPIFNTSVTKTAFLG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3739" stop="3509"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SECIGQANIGTPIDILSIHEFHPQWLMNPPVDSCPNISNCGAQSLTITPLFPTLSSYPSGNSTSLLSPVKMSPLSAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="4779" PGL_stop="7316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4779" e_stop="5014"/>
            <exon e_start="5366" e_stop="5548"/>
            <exon e_start="6890" e_stop="7153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="0.945"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4779" e_stop="5014" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.741">
            <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="5366" e_stop="5548" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341"/>
          </intron>
          <exon e_serial="3" e_score="0.981">
            <gDNA_exon_boundary e_start="6890" e_stop="7153" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4779" stop="5014"/>
              <exon start="5366" stop="5487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4855" stop="5014"/>
              <exon start="5366" stop="5548"/>
              <exon start="6890" stop="7151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4858" stop="5014"/>
              <exon start="5366" stop="5548"/>
              <exon start="6890" stop="7151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403425" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4891" stop="5014"/>
              <exon start="5366" stop="5548"/>
              <exon start="6890" stop="7153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433413" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACG : TCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAG : ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCA</gDNA_template>
            <first_frame> G  N  F  H  G  R  Q  P  S  E  F  G  F  Q  I  R  T  N  T  N  K  K  L  R  L  I  T  V  L  S  K  R  I  W  I  S  S  V  C  S  S  Q  C  F  F  W  *  V  *  F  R  K  L  E  G  F  L  K  N  R  E  G  N  R  Y  G  Y  A  Q  I  A  V  L  V  T  N  F  S  R :   L  *  I  F  K  Y  Q  M  A  L  C  S  I  Y  K  Y  G  S  K  A  Q  G  L  A  F  L  A  F  G  S  I  S  F  L  V  F  V  Y  V  A  I  V  S  K  L  L  P  P  F  D  N  P  I  L  A  A  I  Q  N  D  R :   Y  Y  C  F  L  V  P  L  T  L  P  I  L  V  V  A  I  Y  F  H  W  L  S  M  K  I  F  K  H  A  *  L  R  R  G  M  E  L  L  C  N  L  T  K  D  R  H  Q  L  V  R  F  L  I  P  S  C  L  L  E  T  F  D  M  S  R  M  R  *  V  F  V  V  M  T  N  E  D  T  F  T  I  K  V  *  L  F   </first_frame>
            <second_frame>  E  I  S  M  A  G  S  Q  A  S  L  V  S  K  Y  E  Q  T  P  T  R  N  Y  A  *  L  Q  C  S  L  N  V  F  G  F  L  Q  F  V  L  L  S  V  S  F  G  E  F  D  S  E  N  S  K  V  F  *  R  I  E  K  E  I  D  M  G  M  L  R  *  Q  F  W  *  P  I  F  H   : V  C  E  F  S  S  I  K  W  R  C  V  L  F  T  S  M  V  Q  K  L  K  G  W  R  F  L  H  L  G  P  F  P  F  W  Y  L  F  M  L  L  L  S  P  S  C  F  R  H  S  T  I  R  S  L  Q  P  F  R  M  T   : D  T  I  A  F  W  F  H  *  R  F  P  S  L  L  L  L  Y  I  S  T  G  S  A  *  R  S  L  S  M  H  S  S  D  E  V  W  S  F  C  V  I  S  R  R  I  V  I  N  W  L  G  F  *  F  Q  V  V  Y  L  K  H  L  T  *  V  E  *  D  K  F  S  *  *  *  Q  T  K  I  L  S  L  L  K  C  S  Y  F  </second_frame>
            <third_frame>   K  F  P  W  Q  A  A  K  R  V  W  F  P  N  T  N  K  H  Q  Q  E  I  T  P  N  Y  S  A  L  *  T  Y  L  D  F  F  S  L  F  F  S  V  F  L  L  V  S  L  I  Q  K  T  R  R  F  F  K  E  *  R  R  K  *  I  W  V  C  S  D  S  S  F  G  D  Q  F  F  T  :  S  V  N  F  Q  V  S  N  G  A  V  F  Y  L  Q  V  W  F  K  S  S  R  V  G  V  S  C  I  W  V  H  F  L  F  G  I  C  L  C  C  Y  C  L  Q  V  A  S  A  I  R  Q  S  D  P  C  S  H  S  E  *  Q  :  I  L  L  L  S  G  S  I  N  A  S  H  P  C  C  C  Y  I  F  P  L  A  Q  H  E  D  L  *  A  C  I  A  Q  T  R  Y  G  A  F  V  *  S  H  E  G  S  S  S  I  G  *  V  S  D  S  K  L  F  T  *  N  I  *  H  E  *  N  E  I  S  F  R  S  N  D  K  R  R  Y  F  H  Y  *  S  V  V  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="5548"/>
                    <exon start="6890" stop="6983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKYQMALCSIYKYGSKAQGLAFLAFGSISFLVFVYVAIVSKLLPPFDNPILAAIQNDRYYCFLVPLTLPILVVAIYFHWLSMKIFKHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4970" stop="5014"/>
                    <exon start="5366" stop="5545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWVCSDSSFGDQFFTSVNFQVSNGAVFYLQVWFKSSRVGVSCIWVHFLFGICLCCYCLQVASAIRQSDPCSHSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5002" stop="5014"/>
                    <exon start="5366" stop="5548"/>
                    <exon start="6890" stop="6915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIFHVCEFSSIKWRCVLFTSMVQKLKGWRFLHLGPFPFWYLFMLLLSPSCFRHSTIRSLQPFRMTDTIAFWFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5177" e_stop="5200"/>
            <exon e_start="5366" e_stop="5548"/>
            <exon e_start="6890" e_stop="7316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.723" acc_prob="0.741" e_score="0.708"/>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="0.989"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.708">
            <gDNA_exon_boundary e_start="5177" e_stop="5200" e_length="24"/>
          </exon>
          <intron i_serial="1" don_prob="0.723" acc_prob="0.741">
            <gDNA_intron_boundary i_start="5201" i_stop="5365" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="0.989">
            <gDNA_exon_boundary e_start="5366" e_stop="5548" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="6890" e_stop="7316" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5177" stop="5200"/>
              <exon start="5366" stop="5548"/>
              <exon start="6890" stop="7316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATATAGTGACTAAATTTTCACG : TCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAG : ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTAGGCTACTAAATCATC</gDNA_template>
            <first_frame> Q  Y  S  D  *  I  F  T  :  S  V  N  F  Q  V  S  N  G  A  V  F  Y  L  Q  V  W  F  K  S  S  R  V  G  V  S  C  I  W  V  H  F  L  F  G  I  C  L  C  C  Y  C  L  Q  V  A  S  A  I  R  Q  S  D  P  C  S  H  S  E  *  Q  :  I  L  L  L  S  G  S  I  N  A  S  H  P  C  C  C  Y  I  F  P  L  A  Q  H  E  D  L  *  A  C  I  A  Q  T  R  Y  G  A  F  V  *  S  H  E  G  S  S  S  I  G  *  V  S  D  S  K  L  F  T  *  N  I  *  H  E  *  N  E  I  S  F  R  S  N  D  K  R  R  Y  F  H  Y  *  S  V  V  I  S  A  P  F  V  F  L  H  F  P  E  L  Q  K  L  R  G  Q  N  R  E  L  P  S  N  K  *  F  A  *  I  N  T  C  F  Y  P  R  F  L  M  K  E  P  L  M  K  K  T  F  R  L  L  N  H  </first_frame>
            <second_frame>  N  I  V  T  K  F  S  R :   L  *  I  F  K  Y  Q  M  A  L  C  S  I  Y  K  Y  G  S  K  A  Q  G  L  A  F  L  A  F  G  S  I  S  F  L  V  F  V  Y  V  A  I  V  S  K  L  L  P  P  F  D  N  P  I  L  A  A  I  Q  N  D  R :   Y  Y  C  F  L  V  P  L  T  L  P  I  L  V  V  A  I  Y  F  H  W  L  S  M  K  I  F  K  H  A  *  L  R  R  G  M  E  L  L  C  N  L  T  K  D  R  H  Q  L  V  R  F  L  I  P  S  C  L  L  E  T  F  D  M  S  R  M  R  *  V  F  V  V  M  T  N  E  D  T  F  T  I  K  V  *  L  F  Q  P  L  L  C  F  C  I  S  R  N  F  R  S  *  E  D  K  I  A  S  F  L  Q  I  N  N  L  H  K  S  I  L  A  S  I  Q  D  F  *  *  R  N  R  L  *  R  R  H  L  G  Y  *  I  I </second_frame>
            <third_frame>   I  *  *  L  N  F  H   : V  C  E  F  S  S  I  K  W  R  C  V  L  F  T  S  M  V  Q  K  L  K  G  W  R  F  L  H  L  G  P  F  P  F  W  Y  L  F  M  L  L  L  S  P  S  C  F  R  H  S  T  I  R  S  L  Q  P  F  R  M  T   : D  T  I  A  F  W  F  H  *  R  F  P  S  L  L  L  L  Y  I  S  T  G  S  A  *  R  S  L  S  M  H  S  S  D  E  V  W  S  F  C  V  I  S  R  R  I  V  I  N  W  L  G  F  *  F  Q  V  V  Y  L  K  H  L  T  *  V  E  *  D  K  F  S  *  *  *  Q  T  K  I  L  S  L  L  K  C  S  Y  F  S  P  F  C  V  S  A  F  P  G  T  S  E  V  K  R  T  K  S  R  A  S  F  K  *  I  I  C  I  N  Q  Y  L  L  L  S  K  I  F  D  E  G  T  A  Y  E  E  D  I  *  A  T  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="5548"/>
                    <exon start="6890" stop="6983"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKYQMALCSIYKYGSKAQGLAFLAFGSISFLVFVYVAIVSKLLPPFDNPILAAIQNDRYYCFLVPLTLPILVVAIYFHWLSMKIFKHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5188" stop="5200"/>
                    <exon start="5366" stop="5548"/>
                    <exon start="6890" stop="6915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNFHVCEFSSIKWRCVLFTSMVQKLKGWRFLHLGPFPFWYLFMLLLSPSCFRHSTIRSLQPFRMTDTIAFWFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="13097" PGL_stop="8279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13097" e_stop="12367"/>
            <exon e_start="10158" e_stop="10055"/>
            <exon e_start="9807" e_stop="9579"/>
            <exon e_start="8732" e_stop="8279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="0.970"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="13097" e_stop="12367" e_length="731"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="12366" i_stop="10159" i_length="2208"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="10158" e_stop="10055" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10054" i_stop="9808" i_length="247"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="9807" e_stop="9579" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8732" e_stop="8279" e_length="454"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13097" stop="12667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13087" stop="12441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364910" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13087" stop="12730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13087" stop="12815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13082" stop="12494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13082" stop="12636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13077" stop="12441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13077" stop="12643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13075" stop="12524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13075" stop="12684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13074" stop="12626"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="12580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13070" stop="12656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13068" stop="12463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13068" stop="12660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13068" stop="12745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13066" stop="12367"/>
              <exon start="10158" stop="10102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13064" stop="12571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13061" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12975" stop="12570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12551" stop="12367"/>
              <exon start="10158" stop="10055"/>
              <exon start="9807" stop="9579"/>
              <exon start="8732" stop="8624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9609" stop="9579"/>
              <exon start="8732" stop="8310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9608" stop="9579"/>
              <exon start="8732" stop="8279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217727" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8720" stop="8310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8717" stop="8279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217680" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8655" stop="8310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8596" stop="8310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAACACACACACACACTGAAAATCAAATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATCAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATCGCAAGTGGG : GGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTCAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGG : GGAGAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGTAGTGTTATTGCCTGCTGCACTCGTTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAG : GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTTAAA</gDNA_template>
            <first_frame> K  I  W  V  L  W  G  R  K  R  K  K  R  G  T  Q  I  T  Q  L  L  L  F  L  P  L  T  Y  I  P  H  K  K  V  P  K  H  T  H  T  L  K  I  K  F  F  S  R  N  K  S  *  K  S  V  E  K  R  V  D  *  S  I  S  E  F  F  L  V  V  S  T  K  G  Y  L  K  N  R  I  F  L  P  F  L  I  K  S  R  I  K  K  K  C  C  L  D  N  *  K  R  R  V  F  S  *  L  H  L  *  H  F  G  I  P  Q  I  L  E  F  F  F  *  T  N  Y  C  C  Q  I  M  D  L  D  S  Q  F  F  L  Q  C  V  I  *  Q  L  V  L  F  L  A  M  F  L  L  F  S  *  R  L  H  L  F  R  G  L  N  Q  G  L  N  F  *  E  F  L  P  L  V  L  S  F  V  V  L  L  L  V  E  T  F  L  *  G  T  C  L  C  R  L  I  R  L  W  V  Q  Q  H  P  F  L  L  H  C  L  L  I  *  *  Q  G  S  K  K  L  G  L  L  M  V  A  L  F  L  L  L  L  G  L  L  S  Q  V  G :   V  S  Q  A  S  T  F  M  D  L  S  C  V  L  V  Q  L  L  L  E  P  S  S  L  F  F  K  E  F  F  F  L  L  K   : G  R  S  *  T  P  *  I  S  C  S  T  C  H  Q  L  L  S  *  C  Y  C  L  L  H  S  L  W  S  P  M  L  S  M  S  L  Q  H  S  R  L  N  T  D  T  L  A  C  L  L  W  L  I  P  Q  W  P  M  V  P  I  Y  *  T  F  W  *  L  S  I  P  V  H  *  H  S  R :   S  *  A  M  Q  K  V  Q  L  L  L  L  S  P  Y  L  F  S  K  I  Q  *  H  S  S  E  S  R  A  T  Q  *  L  *  W  E  L  L  L  M  E  N  P  K  E  G  T  N  K  F  *  H  Q  S  K  P  L  F  S  C  F  H  K  V  P  D  T  C  V  S  S  K  G  V  S  C  V  V  V  E  L  G  R  N  R  F  H  C  N  S  V  A  H  R  Q  M  K  W  L  K  G  V  D  F  F  Y  H  S  S  V  V  F  F  L  L  R  G  D  L  Y  I  C  N  Y  F  F  C  V  L  L  Q  *  S  Q  I  M  S  S  S  F  K  W  S  L  Y  Y  M  F  T  F  K </first_frame>
            <second_frame>  K  F  G  S  C  G  E  E  K  G  R  R  E  A  H  K  *  H  N  C  F  S  F  F  H  L  H  T  F  P  T  K  K  F  P  N  T  H  T  H  *  K  S  N  F  F  Q  E  I  N  L  E  N  L  L  R  K  G  W  I  D  Q  F  L  S  F  F  L  *  F  Q  Q  K  G  T  L  K  I  E  S  F  C  H  F  *  *  N  Q  E  S  K  K  N  V  V  W  T  I  R  K  E  G  F  F  H  S  Y  T  Y  N  I  L  V  F  L  K  Y  W  S  S  S  F  K  Q  I  I  A  V  K  L  W  I  *  I  P  N  F  S  Y  N  V  S  Y  D  S  L  C  C  S  *  L  C  F  Y  C  F  L  K  D  C  T  F  S  E  D  *  I  K  V  S  I  F  K  N  F  Y  P  *  C  C  L  L  W  F  C  C  W  W  K  H  F  F  K  V  L  A  C  V  V  *  S  G  C  G  C  N  N  T  L  F  Y  C  I  V  C  L  F  D  D  K  E  A  R  S  L  G  Y  L  W  L  P  C  S  C  C  Y  W  G  C  Y  R  K  W   : G  *  A  K  L  P  P  L  W  I  Y  H  V  Y  W  C  N  C  C  *  S  L  Q  V  C  S  S  R  S  S  S  F  F  *  R  :  G  E  A  E  L  H  E  S  P  A  L  H  V  T  N  C  C  R  S  V  I  A  C  C  T  R  Y  G  A  Q  C  Y  R  C  H  C  N  T  R  D  *  T  Q  I  P  W  P  A  Y  C  G  *  F  R  N  G  L  W  C  Q  F  I  E  L  F  G  D  *  A  Y  Q  C  I  D  T  P   : G  P  R  Q  C  K  R  C  S  C  C  C  Y  L  H  T  Y  F  P  K  S  S  N  I  H  R  N  R  G  L  H  N  D  C  D  G  S  C  C  L  W  R  I  Q  K  K  A  Q  I  S  F  D  I  N  R  N  P  F  F  L  V  F  I  K  Y  Q  T  L  V  F  L  Q  K  V  L  A  V  L  W  *  S  *  E  E  I  D  S  I  A  I  L  *  P  I  D  R  *  N  G  *  K  G  L  I  S  F  T  I  L  L  L  C  S  F  Y  *  E  G  I  F  T  F  V  T  I  F  F  V  C  C  Y  N  K  V  K  *  C  L  L  P  S  N  G  P  Y  I  I  C  L  H  L   </second_frame>
            <third_frame>   N  L  G  L  V  G  K  K  K  E  E  E  R  H  T  N  N  T  I  A  S  L  S  S  T  Y  I  H  S  P  Q  K  S  S  Q  T  H  T  H  T  E  N  Q  I  F  F  K  K  *  I  L  K  I  C  *  E  K  G  G  L  I  N  F  *  V  F  S  C  S  F  N  K  R  V  P  *  K  S  N  L  F  A  I  F  D  K  I  K  N  Q  K  K  M  L  S  G  Q  L  E  K  K  G  F  F  I  A  T  L  I  T  F  W  Y  S  S  N  I  G  V  L  L  L  N  K  L  L  L  S  N  Y  G  F  R  F  P  I  F  L  T  M  C  H  M  T  A  C  A  V  L  S  Y  V  S  I  V  F  L  K  I  A  P  F  Q  R  I  K  S  R  S  Q  F  L  R  I  S  T  L  S  V  V  F  C  G  S  V  V  G  G  N  I  S  L  R  Y  L  P  V  S  F  N  Q  A  V  G  A  T  T  P  F  F  T  A  L  F  A  Y  L  M  T  R  K  Q  E  A  W  A  T  Y  G  C  L  V  P  V  V  T  G  V  V  I  A  S  G  :  G  E  P  S  F  H  L  Y  G  F  I  M  C  I  G  A  T  A  A  R  A  F  K  S  V  L  Q  G  V  L  L  S  S  E  G :   E  K  L  N  S  M  N  L  L  L  Y  M  S  P  I  A  V  V  V  L  L  P  A  A  L  V  M  E  P  N  V  I  D  V  T  A  T  L  A  T  E  H  R  Y  L  G  L  L  I  V  V  N  S  A  M  A  Y  G  A  N  L  L  N  F  L  V  T  K  H  T  S  A  L  T  L  Q  :  V  L  G  N  A  K  G  A  V  A  V  V  I  S  I  L  I  F  Q  N  P  V  T  F  I  G  I  A  G  Y  T  M  T  V  M  G  V  V  A  Y  G  E  S  K  R  R  H  K  *  V  L  T  S  I  E  T  P  F  F  L  F  S  *  S  T  R  H  L  C  F  F  K  R  C  *  L  C  C  G  R  V  R  K  K  *  I  P  L  Q  F  C  S  P  *  T  D  E  M  V  K  R  G  *  F  L  L  P  F  F  C  C  V  L  S  I  K  R  G  S  L  H  L  *  L  F  F  L  C  V  V  T  I  K  S  N  N  V  F  F  L  Q  M  V  L  I  L  Y  V  Y  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12867" stop="12367"/>
                    <exon start="10158" stop="10055"/>
                    <exon start="9807" stop="9579"/>
                    <exon start="8732" stop="8586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNLFAIFDKIKNQKKMLSGQLEKKGFFIATLITFWYSSNIGVLLLNKLLLSNYGFRFPIFLTMCHMTACAVLSYVSIVFLKIAPFQRIKSRSQFLRISTLSVVFCGSVVGGNISLRYLPVSFNQAVGATTPFFTALFAYLMTRKQEAWATYGCLVPVVTGVVIASGGEPSFHLYGFIMCIGATAARAFKSVLQGVLLSSEGEKLNSMNLLLYMSPIAVVVLLPAALVMEPNVIDVTATLATEHRYLGLLIVVNSAMAYGANLLNFLVTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTFIGIAGYTMTVMGVVAYGESKRRHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8578" stop="8336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQSKPLFSCFHKVPDTCVSSKGVSCVVVELGRNRFHCNSVAHRQMKWLKGVDFFYHSSVVFFLLRGDLYICNYFFCVLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="13263" PGL_stop="14087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13263" e_stop="14087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="13263" e_stop="14087" e_length="825"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="14087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13263" stop="13902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATATTTTAAATTTAAAATTTTAATATATAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGAGGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTGAAAAAAAAATAATTTTTTCATGGTGTGCTTTTGATCTAAAATCATCTTTATTTTGTAATTGA</gDNA_template>
            <first_frame> K  N  I  L  N  L  K  F  *  Y  I  V  W  *  F  T  Y  F  L  W  *  T  S  M  L  L  N  *  M  F  V  G  S  C  N  Y  K  I  W  R  *  *  F  F  L  M  E  K  G  L  V  V  Y  D  S  N  F  D  G  *  W  I  V  I  Y  L  F  V  *  M  S  Y  *  F  V  C  M  M  C  I  *  L  T  C  H  V  I  L  R  F  Y  C  R  R  Q  Y  R  R  *  I  Y  Q  *  R  V  L  I  I  P  W  Y  S  N  I  I  I  C  *  *  F  M  N  F  V  F  L  F  F  S  I  C  R  S  L  L  I  S  I  E  M  F  E  L  M  I  F  I  V  Y  G  K  K  N  T  S  I  I  L  F  F  M  S  S  V  P  *  L  C  I  C  F  I  Y  L  S  N  Y  Y  I  F  C  E  F  I  F  *  L  F  I  V  L  F  T  Y  L  S  *  H  S  L  C  *  T  Y  L  D  D  D  L  A  N  I  Y  G  C  Y  K  L  R  R  I  F  D  Q  L  T  I  K  I  L  *  F  N  T  E  E  V  M  I  *  I  D  I  R  N  N  E  *  L  K  Y  E  I  R  E  K  K  I  I  F  S  W  C  A  F  D  L  K  S  S  L  F  C  N  * </first_frame>
            <second_frame>  K  I  F  *  I  *  N  F  N  I  *  C  G  D  S  H  I  F  C  G  E  L  P  C  Y  *  T  E  C  L  L  D  H  A  I  I  K  F  G  D  S  N  F  F  *  W  R  K  D  *  W  C  M  I  R  I  L  M  D  N  G  L  L  Y  I  Y  L  F  K  C  H  I  N  L  F  V  *  C  A  S  N  L  H  V  M  L  F  Y  V  F  T  V  E  G  N  I  G  D  K  F  I  N  R  E  F  *  *  Y  L  G  I  Q  T  L  *  F  V  S  N  L  *  I  L  F  S  Y  F  F  P  F  V  E  V  C  S  Y  Q  L  K  C  L  S  L  *  Y  L  *  Y  M  V  K  R  I  H  Q  L  S  F  F  L  *  V  L  S  H  N  Y  V  F  V  S  F  I  Y  L  I  I  I  F  F  V  S  L  Y  F  D  Y  L  L  F  Y  L  R  T  *  A  S  T  L  F  V  R  H  I  S  M  T  T  W  P  I  Y  M  V  V  I  N  *  E  E  Y  L  I  N  S  P  S  R  Y  Y  D  L  I  P  R  K  *  *  F  K  *  I  *  E  I  M  N  S  *  S  M  K  F  V  K  K  K  *  F  F  H  G  V  L  L  I  *  N  H  L  Y  F  V  I   </second_frame>
            <third_frame>   K  Y  F  K  F  K  I  L  I  Y  S  V  V  I  H  I  F  S  V  V  N  F  H  V  I  E  L  N  V  C  W  I  M  Q  L  *  N  L  E  I  V  I  F  F  N  G  E  R  I  S  G  V  *  F  E  F  *  W  I  M  D  C  Y  I  F  I  C  L  N  V  I  L  I  C  L  Y  D  V  H  L  T  Y  M  S  C  Y  F  T  F  L  L  S  K  A  I  *  E  I  N  L  S  I  E  S  F  D  N  T  L  V  F  K  H  Y  N  L  L  V  I  Y  E  F  C  F  L  I  F  F  H  L  *  K  F  A  H  I  N  *  N  V  *  A  Y  D  I  Y  S  I  W  *  K  E  Y  I  N  Y  P  F  F  Y  E  F  C  P  I  I  M  Y  L  F  H  L  S  I  *  L  L  Y  F  L  *  V  Y  I  L  T  I  Y  C  F  I  Y  V  L  K  L  A  L  S  L  L  D  I  S  R  *  R  L  G  Q  Y  I  W  L  L  *  I  E  K  N  I  *  S  T  H  H  Q  D  I  M  I  *  Y  R  G  S  N  D  L  N  R  Y  K  K  *  *  I  V  K  V  *  N  S  *  K  K  N  N  F  F  M  V  C  F  *  S  K  I  I  F  I  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24409" PGL_stop="22614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24409" e_stop="24338"/>
            <exon e_start="22892" e_stop="22614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.917"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="24409" e_stop="24338" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24337" i_stop="22893" i_length="1445"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22892" e_stop="22614" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24409" stop="24338"/>
              <exon start="22892" stop="22614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218895" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACACTGATTGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCA : GAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</gDNA_template>
            <first_frame> Y  T  D  *  D  H  L  S  W  D  I  R  G  E  *  Y  P  *  G  Y  I  V  H  S  :  E  N  V  V  L  S  I  D  D  D  N  E  V  E  L  Q  N  A  V  K  N  A  S  G  N  L  F  R  F  D  A  H  V  T  E  Y  T  S  Y  V  D  I  A  T  M  S  C  S  A  G  S  *  E  *  M  D  L  A  W  T  S  S  D  F  V  F  L  Y  *  R  N  W  *  N  I  P  K  H  I  S  Y  N  K  L  Q  *  K  E  *  T  I  A  I </first_frame>
            <second_frame>  T  L  I  E  I  I  Y  H  G  I  L  E  G  N  N  I  L  K  G  T  L  C  I  Q :   K  M  *  F  *  A  L  M  M  I  M  K  L  S  Y  K  M  Q  *  K  M  H  Q  A  I  C  F  D  L  M  H  M  *  P  S  T  P  A  M  S  I  L  P  L  C  P  V  L  Q  G  A  E  S  E  W  I  *  L  G  R  A  P  T  L  F  S  C  T  K  E  T  G  K  T  F  L  N  I  F  H  I  I  S  C  N  K  K  N  R  Q  L  L   </second_frame>
            <third_frame>   H  *  L  R  S  S  I  M  G  Y  *  R  G  I  I  S  L  R  V  H  C  A  F   : R  K  C  S  F  E  H  *  *  *  *  *  S  *  A  T  K  C  S  E  K  C  I  R  Q  S  V  S  I  *  C  T  C  N  R  V  H  Q  L  C  R  Y  C  H  Y  V  L  F  C  R  E  L  R  V  N  G  S  S  L  D  E  L  R  L  C  F  P  V  L  K  K  L  V  K  H  S  *  T  Y  F  I  *  *  A  A  I  K  R  I  D  N  C  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="25310" PGL_stop="28330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25310" e_stop="26043"/>
            <exon e_start="27367" e_stop="27413"/>
            <exon e_start="27529" e_stop="27704"/>
            <exon e_start="27811" e_stop="27829"/>
            <exon e_start="27929" e_stop="28330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.939" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="25310" e_stop="26043" e_length="734"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.939">
            <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27367" e_stop="27413" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27529" e_stop="27704" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27811" e_stop="27829" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27929" e_stop="28330" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25310" stop="26043"/>
              <exon start="27367" stop="27400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25318" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25323" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25336" stop="26043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25343" stop="25891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25393" stop="25949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25428" stop="26017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25610" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25617" stop="26018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25706" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253426" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25736" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25981" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25981" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26001" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395367" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27382" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27403" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398737" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27534" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28329"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205988" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27557" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438345" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27818" stop="27829"/>
              <exon start="27929" stop="28170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611397" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTTCTAATTTACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG : GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG : GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA : GTGCTGCCTCACCGTTAAA : GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</gDNA_template>
            <first_frame> S  F  S  N  L  Q  K  F  I  F  L  I  F  S  L  *  L  F  K  N  V  R  L  P  A  Q  C  S  R  L  R  L  R  P  A  T  V  I  S  A  V  L  L  H  P  I  R  C  S  T  A  V  F  S  F  T  L  R  C  S  T  T  V  F  S  I  T  L  R  C  F  T  I  T  L  R  C  S  T  I  T  L  R  C  S  T  S  S  I  S  L  P  L  R  S  R  S  V  S  L  R  R  R  S  T  V  L  R  *  S  A  *  T  P  K  R  E  *  T  T  V  F  I  P  L  R  W  G  R  G  W  V  P  C  S  T  S  F  G  S  V  R  *  S  E  Q  T  T  E  G  *  P  L  T  T  V  C  S  L  W  W  I  P  R  A  T  S  C  W  A  L  W  S  *  *  P  F  C  I  S  C  A  V  C  F  S  T  G  Y  R  S  E  Y  C  S  L  F  P  A  R  G  S  G  W  E  W  V  N  *  *  *  G  A  A  E  G  A  F  F  V  *  S  E  L  Q  L  E  D  C  S  S  A  Y  V  S  L  H  Q  Y  Q  H  *  K  N  R :   S  Q  R  I  H  F  S  V  L  Q  S  P  R  M  E   : G  N  F  R  E  I  *  *  G  *  E  W  K  N  *  F  I  *  I  E  G  R  V  T  *  P  G  I  C  C  I  T  F  Y  P  G  I  A  G  L  Q  V  *  *  N  W  W  K  E  *  S  H  *  I  *  *  L  H  *  :  V  L  P  H  R  *   : R  A  N  *  E  V  Q  G  E  G  Y  F  I  F  W  L  C  Y  V  H  L  *  V  V  H  A  N  S  F  A  F  P  D  C  L  E  T  R  H  M  N  F  T  I  T  G  G  L  T  M  I  Y  Q  L  R  F  R  L  F  S  V  E  R  C  L  L  L  L  V  F  V  N  S  F  Q  G  E  V  E  L  L  A  C  R  S  L  V  C  C  R  A  V  N  G  L  S  K  L  N  P  L  C  F  F  *  C  V  Y  Y  S  I  M  T  T  L  K  S  I  W  F  G  L  F  *  K  I  K  Y  K  Q  I  Y  F  K  </first_frame>
            <second_frame>  L  F  L  I  Y  R  N  L  S  F  *  F  S  L  S  S  F  S  K  M  S  G  Y  P  H  N  V  P  G  Y  G  Y  G  Q  P  P  S  S  Q  P  Y  S  S  T  P  Y  G  A  P  P  P  S  S  A  S  P  Y  G  A  P  P  P  S  S  A  S  P  Y  G  A  S  P  S  P  Y  G  A  P  P  S  P  Y  G  A  P  P  P  Q  S  H  S  P  Y  A  P  V  P  S  P  Y  G  A  G  A  P  S  Y  G  D  P  H  K  P  P  K  E  N  K  P  Q  S  S  S  P  Y  G  G  A  G  A  G  Y  P  A  P  P  P  S  A  P  Y  G  D  P  N  K  P  P  K  D  S  H  S  Q  P  S  A  P  Y  G  G  Y  H  A  P  P  P  A  G  P  Y  G  A  S  S  P  F  A  S  L  V  P  S  A  F  P  P  G  T  D  P  N  I  V  A  C  F  Q  L  A  D  Q  D  G  S  G  L  I  D  D  K  E  L  Q  K  A  L  S  S  Y  N  Q  S  F  S  L  R  T  V  H  L  L  M  Y  L  F  T  N  T  N  T  R  K  I   : G  P  K  E  F  T  S  V  F  Y  S  L  Q  E  W  R  :  G  I  F  E  R  F  D  R  D  R  S  G  K  I  D  S  S  E  L  R  D  A  L  L  S  L  G  Y  A  V  S  P  S  I  L  E  L  L  V  S  K  F  D  K  T  G  G  K  S  R  A  I  E  Y  D  N  F  I  E :   C  C  L  T  V  K  :  G  L  T  E  K  F  K  E  K  D  T  S  Y  S  G  S  A  T  F  T  Y  E  S  F  M  L  T  V  L  P  F  L  I  A  *  R  R  G  I  *  I  S  Q  L  R  V  V  L  L  *  F  T  S  F  V  F  V  C  F  Q  *  R  D  V  C  F  C  *  F  L  *  T  V  S  R  V  K  L  N  Y  L  L  V  E  V  *  C  V  V  E  Q  L  M  G  Y  Q  N  *  I  L  C  V  S  F  D  V  F  T  I  R  S  *  L  L  *  R  V  F  G  S  A  Y  F  R  K  *  N  I  N  K  S  I  S  R </second_frame>
            <third_frame>   F  F  *  F  T  E  I  Y  L  F  N  F  L  S  L  A  F  Q  K  C  P  V  T  R  T  M  F  P  A  T  V  T  A  S  H  R  H  L  S  R  T  P  P  P  H  T  V  L  H  R  R  L  Q  L  H  L  T  V  L  H  H  R  L  Q  H  H  P  T  V  L  H  H  H  L  T  V  L  H  H  H  P  T  V  L  H  L  L  N  L  T  P  L  T  L  P  F  R  L  P  T  A  P  E  H  R  L  T  V  I  R  I  N  P  Q  K  R  I  N  H  S  L  H  P  L  T  V  G  Q  G  L  G  T  L  L  H  L  L  R  L  R  T  V  I  R  T  N  H  R  R  I  A  T  H  N  R  L  L  L  M  V  D  T  T  R  H  L  L  L  G  L  M  E  L  V  A  L  L  H  L  L  C  R  L  L  F  H  R  V  P  I  R  I  L  *  L  V  S  S  S  R  I  R  M  G  V  G  *  L  M  I  R  S  C  R  R  R  F  L  R  I  I  R  A  S  A  *  G  L  F  I  C  L  C  I  S  S  P  I  P  T  L  E  K  S  :  V  P  K  N  S  L  Q  C  S  T  V  S  K  N  G  G :   E  F  S  R  D  L  I  G  I  G  V  E  K  L  I  H  L  N  *  G  T  R  Y  L  A  W  D  M  L  Y  H  L  L  S  W  N  C  W  S  P  S  L  I  K  L  V  E  R  V  E  P  L  N  M  I  T  S  L   : S  A  A  S  P  L  K :   G  *  L  R  S  S  R  R  R  I  L  H  I  L  A  L  L  R  S  L  M  S  R  S  C  *  Q  F  C  L  S  *  L  L  R  D  E  A  Y  E  F  H  N  Y  G  W  S  Y  Y  D  L  P  A  S  F  S  F  V  F  S  R  E  M  F  A  S  V  S  F  C  K  Q  F  P  G  *  S  *  I  T  C  L  *  K  S  S  V  L  *  S  S  *  W  A  I  K  T  K  S  F  V  F  L  L  M  C  L  L  F  D  H  D  Y  F  K  E  Y  L  V  R  L  I  L  E  N  K  I  *  T  N  L  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25344" stop="26043"/>
                    <exon start="27367" stop="27413"/>
                    <exon start="27529" stop="27704"/>
                    <exon start="27811" stop="27829"/>
                    <exon start="27929" stop="28033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLSSFSKMSGYPHNVPGYGYGQPPSSQPYSSTPYGAPPPSSASPYGAPPPSSASPYGASPSPYGAPPSPYGAPPPQSHSPYAPVPSPYGAGAPSYGDPHKPPKENKPQSSSPYGGAGAGYPAPPPSAPYGDPNKPPKDSHSQPSAPYGGYHAPPPAGPYGASSPFASLVPSAFPPGTDPNIVACFQLADQDGSGLIDDKELQKALSSYNQSFSLRTVHLLMYLFTNTNTRKIGPKEFTSVFYSLQEWRGIFERFDRDRSGKIDSSELRDALLSLGYAVSPSILELLVSKFDKTGGKSRAIEYDNFIECCLTVKGLTEKFKEKDTSYSGSATFTYESFMLTVLPFLIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="25951" PGL_stop="25332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25951" e_stop="25332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="25951" e_stop="25332" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25951" stop="25332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25868" stop="25332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCAGCTCCTTATCATCAATTAACCCACTCCCATCCTGATCCGCGAGCTGGAAACAAGCTACAATATTCGGATCGGTACCCGGTGGAAAAGCAGACGGCACAAGAGATGCAAAAGGGCTACTAGCTCCATAAGGCCCAGCAGGAGGTGGCGCGTGGTATCCACCATAAGGAGCAGACGGTTGTGAGTGGCTATCCTTCGGTGGTTTGTTCGGATCACCGTACGGAGCCGAAGGAGGTGGAGCAGGGTACCCAGCCCCTGCCCCACCGTAAGGGGATGAAGACTGTGGTTTATTCTCTTTTGGGGGTTTATGCGGATCACCGTAAGACGGTGCTCCGGCGCCGTAGGGAGACGGAACGGGAGCGTAAGGGGAGTGAGATTGAGGAGGTGGAGCACCGTAGGGTGATGGTGGAGCACCGTAAGGTGATGGTGAAGCACCGTAGGGTGATGCTGAAGACGGTGGTGGAGCACCGTAAGGTGAAGCTGAAGACGGCGGTGGAGCACCGTATGGGGTGGAGGAGTACGGCTGAGATGACGGTGGCTGGCCGTAACCGTAGCCGGGAACATTGTGCGGGTAACCGGACATTTTTGAAAAGCTAGAGAGAGAAAATTAAAAAGATAA</gDNA_template>
            <first_frame> C  S  S  L  S  S  I  N  P  L  P  S  *  S  A  S  W  K  Q  A  T  I  F  G  S  V  P  G  G  K  A  D  G  T  R  D  A  K  G  L  L  A  P  *  G  P  A  G  G  G  A  W  Y  P  P  *  G  A  D  G  C  E  W  L  S  F  G  G  L  F  G  S  P  Y  G  A  E  G  G  G  A  G  Y  P  A  P  A  P  P  *  G  D  E  D  C  G  L  F  S  F  G  G  L  C  G  S  P  *  D  G  A  P  A  P  *  G  D  G  T  G  A  *  G  E  *  D  *  G  G  G  A  P  *  G  D  G  G  A  P  *  G  D  G  E  A  P  *  G  D  A  E  D  G  G  G  A  P  *  G  E  A  E  D  G  G  G  A  P  Y  G  V  E  E  Y  G  *  D  D  G  G  W  P  *  P  *  P  G  T  L  C  G  *  P  D  I  F  E  K  L  E  R  E  N  *  K  D   </first_frame>
            <second_frame>  A  A  P  Y  H  Q  L  T  H  S  H  P  D  P  R  A  G  N  K  L  Q  Y  S  D  R  Y  P  V  E  K  Q  T  A  Q  E  M  Q  K  G  Y  *  L  H  K  A  Q  Q  E  V  A  R  G  I  H  H  K  E  Q  T  V  V  S  G  Y  P  S  V  V  C  S  D  H  R  T  E  P  K  E  V  E  Q  G  T  Q  P  L  P  H  R  K  G  M  K  T  V  V  Y  S  L  L  G  V  Y  A  D  H  R  K  T  V  L  R  R  R  R  E  T  E  R  E  R  K  G  S  E  I  E  E  V  E  H  R  R  V  M  V  E  H  R  K  V  M  V  K  H  R  R  V  M  L  K  T  V  V  E  H  R  K  V  K  L  K  T  A  V  E  H  R  M  G  W  R  S  T  A  E  M  T  V  A  G  R  N  R  S  R  E  H  C  A  G  N  R  T  F  L  K  S  *  R  E  K  I  K  K  I  </second_frame>
            <third_frame>   Q  L  L  I  I  N  *  P  T  P  I  L  I  R  E  L  E  T  S  Y  N  I  R  I  G  T  R  W  K  S  R  R  H  K  R  C  K  R  A  T  S  S  I  R  P  S  R  R  W  R  V  V  S  T  I  R  S  R  R  L  *  V  A  I  L  R  W  F  V  R  I  T  V  R  S  R  R  R  W  S  R  V  P  S  P  C  P  T  V  R  G  *  R  L  W  F  I  L  F  W  G  F  M  R  I  T  V  R  R  C  S  G  A  V  G  R  R  N  G  S  V  R  G  V  R  L  R  R  W  S  T  V  G  *  W  W  S  T  V  R  *  W  *  S  T  V  G  *  C  *  R  R  W  W  S  T  V  R  *  S  *  R  R  R  W  S  T  V  W  G  G  G  V  R  L  R  *  R  W  L  A  V  T  V  A  G  N  I  V  R  V  T  G  H  F  *  K  A  R  E  R  K  L  K  R  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25827" stop="25354"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHKAQQEVARGIHHKEQTVVSGYPSVVCSDHRTEPKEVEQGTQPLPHRKGMKTVVYSLLGVYADHRKTVLRRRRETERERKGSEIEEVEHRRVMVEHRKVMVKHRRVMLKTVVEHRKVKLKTAVEHRMGWRSTAEMTVAGRNRSREHCAGNRTFLKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="29381" PGL_stop="33660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29381" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31588"/>
            <exon e_start="32047" e_stop="32266"/>
            <exon e_start="32585" e_stop="32727"/>
            <exon e_start="32910" e_stop="33047"/>
            <exon e_start="33141" e_stop="33484"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29381" e_stop="29729" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31467" e_stop="31588" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.819">
            <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32047" e_stop="32266" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.819">
            <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32585" e_stop="32727" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32910" e_stop="33047" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.963" acc_prob="0.888">
            <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="0.991">
            <gDNA_exon_boundary e_start="33141" e_stop="33484" e_length="344"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29383" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29404" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29405" stop="29729"/>
              <exon start="30782" stop="30906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29422" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29433" stop="29729"/>
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        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA : ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG : CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT : GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATGAAAAAATTTGTTTTAGCTGGAATTTGCCA</gDNA_template>
            <first_frame> I  I  Y  S  L  Q  Q  K  R  R  N  P  R  N  L  S  S  T  D  P  L  L  I  F  S  V  S  L  V  L  H  G  G  E  F  C  G  C  Y  L  L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M  H  W  S  L  F  I  F  F  N  H  D  N  G  R  T  L  I  I  D  L  F  N  Q  D  K :   Y  L  N  A  I  Q  T  S  A  P  H  L  L  R  Y  L  A  I  A  F  I  V  N  K  R  R  R  P  Q  F  K  D  F  I  K  V  I  Q  Q  E  Q  H  S  C  K  D  P  I  T  E  F  L  A  C  I  Y  V  D  Y  D  F  D  G  A  Q  E  K  M  K  E  C  E  E  :  L  I  L  N  D  P  F  L  G  K  R  A  E  E  G  S  F  S  S  V  P  L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  L  D  A  K  I  D  T  E  T  G  T  V  T  M  E  P  N  Q  P  N  V :   Y  E  Q  L  I  D  H  T  K  P  L  S  G  R  T  Y  K  L  V  S  Q  L  L  E  H  A  Q  T  Q  L  A  R  *  F  G  *  G  H  *  A  R  A  N  F  A  L  L  P  Y  L  I  N  T  F  I  F  K  N  V  A  Y  V  N  S  W  I  S  L  G  G  N  F  E  I  H  D  E  L  Y  I  S  F  F  F  I  L  C  C  L  H  W  K  W  Y  A  F  A  F  *  Y  S  F  L  P  *  K  N  L  F  *  L  E  F  A  </first_frame>
            <second_frame>  L  F  I  P  Y  S  K  K  D  E  T  L  E  I  F  L  L  P  I  H  F  S  S  F  Q  F  L  W  F  C  T  A  A  S  F  V  V  A  I  S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  I  G  V  Y  S  S  S  S  T  M  T  M  A  G  H  *  S  L  T  C  L  T  R  T   : N  T  *  M  P  F  K  Q  V  L  P  T  C  C  G  T  W  L  L  H  L  L  S  T  K  E  E  D  L  N  L  R  T  L  *  R  L  F  S  R  S  N  T  L  V  K  I  P  S  Q  S  F  W  H  V  F  T  S  T  M  I  L  M  G  H  R  R  R  *  R  S  A  K  S :   *  Y  *  M  T  H  S  L  E  K  E  L  K  R  A  V  S  P  L  C  H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S  L  M  P  R  *  T  L  K  P  G  Q  L  Q  W  N  Q  I  S  L  M   : C  T  S  S  S  S  I  T  P  S  P  F  L  D  A  R  T  N  *  S  V  S  F  L  N  M  H  K  H  N  L  L  D  S  L  V  E  D  I  K  L  V  P  I  L  H  C  S  R  T  *  L  T  P  L  Y  S  R  M  L  L  M  L  I  P  G  F  P  L  E  E  I  L  R  Y  M  M  N  Y  T  L  V  S  F  L  S  C  V  V  S  I  G  S  G  M  P  L  H  F  S  T  R  F  C  H  E  K  I  C  F  S  W  N  L  P </second_frame>
            <third_frame>   Y  L  F  L  T  A  K  K  T  K  P  *  K  S  F  F  Y  R  S  T  S  H  L  F  S  F  S  G  S  A  R  R  R  V  L  W  L  L  S  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A  L  E  S  I  H  L  L  Q  P  *  Q  W  Q  D  T  D  H  *  P  V  *  P  G  Q  :  I  L  E  C  H  S  N  K  C  S  P  L  A  A  V  L  G  Y  C  I  Y  C  Q  Q  K  K  K  T  S  I  *  G  L  Y  K  G  Y  S  A  G  A  T  L  L  *  R  S  H  H  R  V  F  G  M  Y  L  R  R  L  *  F  *  W  G  T  G  E  D  E  G  V  R  R   : A  N  I  E  *  P  I  P  W  K  K  S  *  R  G  Q  F  L  L  C  A  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K  A  *  C  Q  D  R  H  *  N  R  D  S  Y  N  G  T  K  S  A  *  C  :  V  R  A  A  H  R  S  H  Q  A  P  F  W  T  H  V  Q  I  S  Q  S  A  S  *  T  C  T  N  T  T  C  *  I  V  W  L  R  T  L  S  S  C  Q  F  C  I  A  P  V  P  D  *  H  L  Y  I  Q  E  C  C  L  C  *  F  L  D  F  P  W  R  K  F  *  D  T  *  *  I  I  H  *  F  L  F  Y  L  V  L  S  P  L  E  V  V  C  L  C  I  L  V  L  V  F  A  M  K  K  F  V  L  A  G  I  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29381" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31588"/>
                    <exon start="32047" stop="32266"/>
                    <exon start="32585" stop="32727"/>
                    <exon start="32910" stop="33047"/>
                    <exon start="33141" stop="33240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSLQQKRRNPRNLSSTDPLLIFSVSLVLHGGEFCGCYLLPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLAIAFIVNKRRRPQFKDFIKVIQQEQHSCKDPITEFLACIYVDYDFDGAQEKMKECEELILNDPFLGKRAEEGSFSSVPLRDEFLENARLFISETYCRIHQRIDMGVLAEKLNLNLEEAERWMVNLIRTSKLDAKIDTETGTVTMEPNQPNVYEQLIDHTKPLSGRTYKLVSQLLEHAQTQLAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33293" stop="33484"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTPLYSRMLLMLIPGFPLEEILRYMMNYTLVSFLSCVVSIGSGMPLHFSTRFCHEKICFSWNLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29381" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31588"/>
            <exon e_start="32047" e_stop="32266"/>
            <exon e_start="32585" e_stop="32727"/>
            <exon e_start="32910" e_stop="33047"/>
            <exon e_start="33141" e_stop="33393"/>
            <exon e_start="33640" e_stop="33660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29381" e_stop="29729" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31467" e_stop="31588" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.819">
            <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32047" e_stop="32266" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.819">
            <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32585" e_stop="32727" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32910" e_stop="33047" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.963" acc_prob="0.888">
            <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33141" e_stop="33393" e_length="253"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33394" i_stop="33639" i_length="246"/>
          </intron>
          <exon e_serial="9" e_score="0.619">
            <gDNA_exon_boundary e_start="33640" e_stop="33660" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29383" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29404" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29405" stop="29729"/>
              <exon start="30782" stop="30906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29422" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29433" stop="29729"/>
              <exon start="30782" stop="30920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29447" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29448" stop="29729"/>
              <exon start="30782" stop="30861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29451" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29453" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29469" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29472" stop="29729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29473" stop="29729"/>
              <exon start="30782" stop="30910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29475" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29479" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29479" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32088"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29483" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29483" stop="29729"/>
              <exon start="30782" stop="30923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29486" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29492" stop="29729"/>
              <exon start="30782" stop="30905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29493" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29494" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E590945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29498" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29522" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29526" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29527" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29538" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29541" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29568" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29613" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30936"/>
              <exon start="31108" stop="31241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30826" stop="30936"/>
              <exon start="31108" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30895" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="32915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31180" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31198" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="32975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31214" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31319" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31331" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31486" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726973" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31486" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31526" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591273" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32101" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416207" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32114" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32114" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242143" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32114" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32171" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591232" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32179" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32209" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E562350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32217" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417670" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32243" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417531" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32708" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32914" stop="33047"/>
              <exon start="33141" stop="33393"/>
              <exon start="33640" stop="33660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209022" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA : ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG : CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT : GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTT : ATGACAAATTCAAAAAATGAA</gDNA_template>
            <first_frame> I  I  Y  S  L  Q  Q  K  R  R  N  P  R  N  L  S  S  T  D  P  L  L  I  F  S  V  S  L  V  L  H  G  G  E  F  C  G  C  Y  L  L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M  H  W  S  L  F  I  F  F  N  H  D  N  G  R  T  L  I  I  D  L  F  N  Q  D  K :   Y  L  N  A  I  Q  T  S  A  P  H  L  L  R  Y  L  A  I  A  F  I  V  N  K  R  R  R  P  Q  F  K  D  F  I  K  V  I  Q  Q  E  Q  H  S  C  K  D  P  I  T  E  F  L  A  C  I  Y  V  D  Y  D  F  D  G  A  Q  E  K  M  K  E  C  E  E  :  L  I  L  N  D  P  F  L  G  K  R  A  E  E  G  S  F  S  S  V  P  L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  L  D  A  K  I  D  T  E  T  G  T  V  T  M  E  P  N  Q  P  N  V :   Y  E  Q  L  I  D  H  T  K  P  L  S  G  R  T  Y  K  L  V  S  Q  L  L  E  H  A  Q  T  Q  L  A  R  *  F  G  *  G  H  *  A  R  A  N  F  A  L  L  P  Y  L  I  N  T  F  I  F  K  N  V  A  Y  V  N  S  W  I  S  L  G  G  N  F  E  I  H  D  E  L  Y  I  S  F  F  F  :  M  T  N  S  K  N  E </first_frame>
            <second_frame>  L  F  I  P  Y  S  K  K  D  E  T  L  E  I  F  L  L  P  I  H  F  S  S  F  Q  F  L  W  F  C  T  A  A  S  F  V  V  A  I  S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  I  G  V  Y  S  S  S  S  T  M  T  M  A  G  H  *  S  L  T  C  L  T  R  T   : N  T  *  M  P  F  K  Q  V  L  P  T  C  C  G  T  W  L  L  H  L  L  S  T  K  E  E  D  L  N  L  R  T  L  *  R  L  F  S  R  S  N  T  L  V  K  I  P  S  Q  S  F  W  H  V  F  T  S  T  M  I  L  M  G  H  R  R  R  *  R  S  A  K  S :   *  Y  *  M  T  H  S  L  E  K  E  L  K  R  A  V  S  P  L  C  H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S  L  M  P  R  *  T  L  K  P  G  Q  L  Q  W  N  Q  I  S  L  M   : C  T  S  S  S  S  I  T  P  S  P  F  L  D  A  R  T  N  *  S  V  S  F  L  N  M  H  K  H  N  L  L  D  S  L  V  E  D  I  K  L  V  P  I  L  H  C  S  R  T  *  L  T  P  L  Y  S  R  M  L  L  M  L  I  P  G  F  P  L  E  E  I  L  R  Y  M  M  N  Y  T  L  V  S  F  L :   *  Q  I  Q  K  M   </second_frame>
            <third_frame>   Y  L  F  L  T  A  K  K  T  K  P  *  K  S  F  F  Y  R  S  T  S  H  L  F  S  F  S  G  S  A  R  R  R  V  L  W  L  L  S  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A  L  E  S  I  H  L  L  Q  P  *  Q  W  Q  D  T  D  H  *  P  V  *  P  G  Q  :  I  L  E  C  H  S  N  K  C  S  P  L  A  A  V  L  G  Y  C  I  Y  C  Q  Q  K  K  K  T  S  I  *  G  L  Y  K  G  Y  S  A  G  A  T  L  L  *  R  S  H  H  R  V  F  G  M  Y  L  R  R  L  *  F  *  W  G  T  G  E  D  E  G  V  R  R   : A  N  I  E  *  P  I  P  W  K  K  S  *  R  G  Q  F  L  L  C  A  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K  A  *  C  Q  D  R  H  *  N  R  D  S  Y  N  G  T  K  S  A  *  C  :  V  R  A  A  H  R  S  H  Q  A  P  F  W  T  H  V  Q  I  S  Q  S  A  S  *  T  C  T  N  T  T  C  *  I  V  W  L  R  T  L  S  S  C  Q  F  C  I  A  P  V  P  D  *  H  L  Y  I  Q  E  C  C  L  C  *  F  L  D  F  P  W  R  K  F  *  D  T  *  *  I  I  H  *  F  L  F   : Y  D  K  F  K  K  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29381" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31588"/>
                    <exon start="32047" stop="32266"/>
                    <exon start="32585" stop="32727"/>
                    <exon start="32910" stop="33047"/>
                    <exon start="33141" stop="33240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSLQQKRRNPRNLSSTDPLLIFSVSLVLHGGEFCGCYLLPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLAIAFIVNKRRRPQFKDFIKVIQQEQHSCKDPITEFLACIYVDYDFDGAQEKMKECEELILNDPFLGKRAEEGSFSSVPLRDEFLENARLFISETYCRIHQRIDMGVLAEKLNLNLEEAERWMVNLIRTSKLDAKIDTETGTVTMEPNQPNVYEQLIDHTKPLSGRTYKLVSQLLEHAQTQLAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="29381" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31515"/>
            <exon e_start="32647" e_stop="32727"/>
            <exon e_start="32910" e_stop="33047"/>
            <exon e_start="33141" e_stop="33393"/>
            <exon e_start="33640" e_stop="33660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.888" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.619"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29381" e_stop="29729" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31467" e_stop="31515" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31516" i_stop="32646" i_length="1131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32647" e_stop="32727" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32910" e_stop="33047" e_length="138"/>
          </exon>
          <intron i_serial="6" don_prob="0.963" acc_prob="0.888">
            <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="33141" e_stop="33393" e_length="253"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33394" i_stop="33639" i_length="246"/>
          </intron>
          <exon e_serial="8" e_score="0.619">
            <gDNA_exon_boundary e_start="33640" e_stop="33660" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29383" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29405" stop="29729"/>
              <exon start="30782" stop="30906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29422" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29433" stop="29729"/>
              <exon start="30782" stop="30920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29447" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29448" stop="29729"/>
              <exon start="30782" stop="30861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29451" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29453" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476292" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29470" stop="29729"/>
              <exon start="30782" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29472" stop="29729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29473" stop="29729"/>
              <exon start="30782" stop="30910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29475" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444117" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29479" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29479" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29482" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29483" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29483" stop="29729"/>
              <exon start="30782" stop="30923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29492" stop="29729"/>
              <exon start="30782" stop="30905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29493" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31315"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29498" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446529" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29500" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31515"/>
              <exon start="32647" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29522" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29526" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29527" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29538" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31321"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29613" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E583755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30807" stop="30936"/>
              <exon start="31108" stop="31241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30826" stop="30936"/>
              <exon start="31108" stop="31292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32708" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32914" stop="33047"/>
              <exon start="33141" stop="33393"/>
              <exon start="33640" stop="33660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209022" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGC : ATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT : GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTT : ATGACAAATTCAAAAAATGAA</gDNA_template>
            <first_frame> I  I  Y  S  L  Q  Q  K  R  R  N  P  R  N  L  S  S  T  D  P  L  L  I  F  S  V  S  L  V  L  H  G  G  E  F  C  G  C  Y  L  L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M   : H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S  L  M  P  R  *  T  L  K  P  G  Q  L  Q  W  N  Q  I  S  L  M   : C  T  S  S  S  S  I  T  P  S  P  F  L  D  A  R  T  N  *  S  V  S  F  L  N  M  H  K  H  N  L  L  D  S  L  V  E  D  I  K  L  V  P  I  L  H  C  S  R  T  *  L  T  P  L  Y  S  R  M  L  L  M  L  I  P  G  F  P  L  E  E  I  L  R  Y  M  M  N  Y  T  L  V  S  F  L :   *  Q  I  Q  K  M   </first_frame>
            <second_frame>  L  F  I  P  Y  S  K  K  D  E  T  L  E  I  F  L  L  P  I  H  F  S  S  F  Q  F  L  W  F  C  T  A  A  S  F  V  V  A  I  S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  :  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K  A  *  C  Q  D  R  H  *  N  R  D  S  Y  N  G  T  K  S  A  *  C  :  V  R  A  A  H  R  S  H  Q  A  P  F  W  T  H  V  Q  I  S  Q  S  A  S  *  T  C  T  N  T  T  C  *  I  V  W  L  R  T  L  S  S  C  Q  F  C  I  A  P  V  P  D  *  H  L  Y  I  Q  E  C  C  L  C  *  F  L  D  F  P  W  R  K  F  *  D  T  *  *  I  I  H  *  F  L  F   : Y  D  K  F  K  K  *  </second_frame>
            <third_frame>   Y  L  F  L  T  A  K  K  T  K  P  *  K  S  F  F  Y  R  S  T  S  H  L  F  S  F  S  G  S  A  R  R  R  V  L  W  L  L  S  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A :   L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  L  D  A  K  I  D  T  E  T  G  T  V  T  M  E  P  N  Q  P  N  V :   Y  E  Q  L  I  D  H  T  K  P  L  S  G  R  T  Y  K  L  V  S  Q  L  L  E  H  A  Q  T  Q  L  A  R  *  F  G  *  G  H  *  A  R  A  N  F  A  L  L  P  Y  L  I  N  T  F  I  F  K  N  V  A  Y  V  N  S  W  I  S  L  G  G  N  F  E  I  H  D  E  L  Y  I  S  F  F  F  :  M  T  N  S  K  N  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29381" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31515"/>
                    <exon start="32647" stop="32651"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>783</number_coding_nucleotides>
                  <number_encoded_amino_acids>261</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSLQQKRRNPRNLSSTDPLLIFSVSLVLHGGEFCGCYLLPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31502" stop="31515"/>
                    <exon start="32647" stop="32727"/>
                    <exon start="32910" stop="33047"/>
                    <exon start="33141" stop="33240"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMANALRDEFLENARLFISETYCRIHQRIDMGVLAEKLNLNLEEAERWMVNLIRTSKLDAKIDTETGTVTMEPNQPNVYEQLIDHTKPLSGRTYKLVSQLLEHAQTQLAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="50879" PGL_stop="52217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50879" e_stop="50983"/>
            <exon e_start="51107" e_stop="52217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50879" e_stop="50983" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.876">
            <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="51107" e_stop="52217" e_length="1111"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50879" stop="50983"/>
              <exon start="51107" stop="51726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50881" stop="50983"/>
              <exon start="51107" stop="51821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50883" stop="50983"/>
              <exon start="51107" stop="51759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50884" stop="50983"/>
              <exon start="51107" stop="51782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50884" stop="50983"/>
              <exon start="51107" stop="51650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50884" stop="50983"/>
              <exon start="51107" stop="51547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50884" stop="50983"/>
              <exon start="51107" stop="51547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50888" stop="50983"/>
              <exon start="51107" stop="51692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405419" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50888" stop="50983"/>
              <exon start="51107" stop="51455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288615" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50889" stop="50983"/>
              <exon start="51107" stop="51545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50889" stop="50983"/>
              <exon start="51107" stop="51490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50892" stop="50983"/>
              <exon start="51107" stop="51671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50894" stop="50983"/>
              <exon start="51107" stop="51547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50894" stop="50983"/>
              <exon start="51107" stop="51369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202667" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50895" stop="50983"/>
              <exon start="51107" stop="51546"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50896" stop="50983"/>
              <exon start="51107" stop="52210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50896" stop="50983"/>
              <exon start="51107" stop="51889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50901" stop="50983"/>
              <exon start="51107" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50901" stop="50983"/>
              <exon start="51107" stop="51805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50901" stop="50983"/>
              <exon start="51107" stop="51711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50905" stop="50983"/>
              <exon start="51107" stop="51808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50906" stop="50983"/>
              <exon start="51107" stop="51783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50906" stop="50983"/>
              <exon start="51107" stop="51775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50907" stop="50983"/>
              <exon start="51107" stop="51573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50909" stop="50983"/>
              <exon start="51107" stop="51873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50911" stop="50983"/>
              <exon start="51107" stop="51870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50925" stop="50983"/>
              <exon start="51107" stop="51478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50926" stop="50983"/>
              <exon start="51107" stop="51882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693234" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50930" stop="50983"/>
              <exon start="51107" stop="51477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50933" stop="50983"/>
              <exon start="51107" stop="51709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50933" stop="50983"/>
              <exon start="51107" stop="51677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50934" stop="50983"/>
              <exon start="51107" stop="51912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50940" stop="50983"/>
              <exon start="51107" stop="51653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50947" stop="50983"/>
              <exon start="51107" stop="51542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50957" stop="50983"/>
              <exon start="51107" stop="51788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214218" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50959" stop="50983"/>
              <exon start="51107" stop="51429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51131" stop="51673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51169" stop="51536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51174" stop="51776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201339" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51226" stop="52078"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51320" stop="51775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51320" stop="51472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51330" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51364" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51366" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51393" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51393" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51394" stop="52150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51394" stop="52150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51416" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51417" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51417" stop="52021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51417" stop="51792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51417" stop="51774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51419" stop="51912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51419" stop="51775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51432" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51434" stop="52181"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51435" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51436" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697120" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51436" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51436" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51438" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51451" stop="51912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51457" stop="52169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51458" stop="52169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51460" stop="52184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51496" stop="52217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51509" stop="51858"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51513" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51548" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689514" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51556" stop="52071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51559" stop="52169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51573" stop="52217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376489" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51580" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51583" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51610" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51616" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51703" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51704" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51782" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51786" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51886" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51887" stop="52180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG : GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAGGCAATTATTTCTACTAACTCAG</gDNA_template>
            <first_frame> F  S  F  L  C  Q  L  P  W  L  V  P  N  Y  I  F  Q  L  P  R  R  L  C  W  *  Y  L  Y  W  L  P  *  I  S  Q  :  V  H  K  Q  E  F  V  M  E  E  M  G  M  D  Y  H  L  Q  Q  M  L  W  L  Y  V  I  E  T  I  Y  E  E  *  E  S  M  I  L  I  N  Q  L  S  K  P  S  E  A  R  I  L  N  S  Y  *  A  C  Q  I  L  T  F  R  I  S  R  L  A  K  L  T  R  M  L  G  S  K  T  M  L  G  T  M  V  M  L  S  S  G  I  *  L  L  E  M  K  L  V  H  *  M  A  T  R  S  M  C  L  S  *  S  M  Q  *  E  T  F  R  T  R  F  L  A  L  V  *  E  T  R  S  K  F  L  L  L  L  K  P  N  L  L  Q  I  L  T  L  H  Q  E  A  S  L  K  T  T  S  E  G  M  L  I  P  S  L  D  S  *  *  L  T  A  H  L  Y  L  S  T  Y  I  H  T  L  Q  *  Q  T  I  K  L  L  S  L  T  T  R  C  L  H  P  L  E  L  L  *  M  I  M  E  E  N  T  A  T  Y  L  M  H  S  *  M  L  H  T  R  P  L  K  K  P  V  V  H  L  W  I  S  L  Y  Q  R  A  V  G  L  Q  L  E  Q  G  N  *  P  L  L  T  T  R  G  L  T  T  T  T  *  L  D  M  *  K  E  G  V  R  K  D  H  Q  S  L  L  R  L  T  F  S  P  C  L  M  K  I  S  R  A  L  K  L  R  N  I  L  D  C  L  H  Q  T  G  S  Q  N  T  Q  S  V  S  T  S  *  T  M  L  R  N  K  S  *  S  I  F  S  S  Y  N  M  *  L  N  N  R  I  V  A  Q  L  E  N  R  A  T  L  R  M  I  C  T  H  P  T  C  L  Y  K  A  I  I  S  T  N  S  </first_frame>
            <second_frame>  F  L  F  F  A  N  Y  H  G  L  Y  Q  T  T  F  S  N  Y  R  D  D  S  A  G  D  T  Y  I  G  Y  L  R  F  H  R :   C  T  N  R  S  L  L  W  K  K  W  E  W  I  T  I  S  S  R  C  C  G  S  M  *  S  K  Q  Y  T  K  N  E  N  L  *  S  S  S  T  N  S  P  S  P  Q  R  L  E  Y  *  T  H  T  R  R  A  K  S  *  P  S  E  Y  R  V  *  P  S  *  R  E  C  L  G  P  K  Q  C  *  E  L  W  *  C  *  V  Q  V  Y  S  C  W  K  *  S  *  S  I  K  W  Q  R  A  V  C  A  F  R  D  Q  C  N  E  K  H  S  E  R  D  F  W  R  W  S  R  K  P  D  Q  S  F  Y  C  Y  *  N  R  T  Y  Y  R  Y  L  P  S  I  K  R  Q  V  *  R  Q  R  P  R  V  C  *  S  H  H  *  I  L  S  S  *  P  L  T  F  T  C  Q  H  I  S  I  L  C  N  S  K  Q  S  S  Y  *  A  *  L  R  V  V  Y  I  P  W  S  C  C  E  *  *  W  K  R  I  P  Q  L  I  *  C  T  L  R  C  Y  I  L  G  P  *  K  S  R  W  F  I  F  G  Y  R  C  I  R  E  R  L  A  F  S  W  S  R  A  I  D  L  Y  *  Q  R  E  D  L  Q  Q  Q  L  D  *  T  C  E  K  R  E  S  E  K  T  I  K  A  Y  *  G  L  H  F  R  L  V  *  *  K  S  Q  E  P  *  N  *  E  T  F  W  T  V  Y  T  K  Q  A  A  K  I  P  N  Q  F  Q  L  A  R  L  C  Y  G  I  R  V  S  R  S  F  L  L  I  I  C  S  *  I  I  E  S  L  L  N  L  K  T  E  Q  P  F  A  *  Y  V  L  I  L  H  A  Y  I  R  Q  L  F  L  L  T  Q </second_frame>
            <third_frame>   F  F  S  L  P  I  T  M  A  C  T  K  L  H  F  P  I  T  A  T  T  L  L  V  I  L  I  L  A  T  L  D  F  T   : G  A  Q  T  G  V  C  Y  G  R  N  G  N  G  L  P  S  P  A  D  V  V  A  L  C  N  R  N  N  I  R  R  M  R  I  Y  D  P  H  Q  P  T  L  Q  A  L  R  G  S  N  I  E  L  I  L  G  V  P  N  P  D  L  Q  N  I  A  S  S  Q  A  N  A  N  A  W  V  Q  N  N  V  R  N  Y  G  N  V  K  F  R  Y  I  A  V  G  N  E  V  S  P  L  N  G  N  A  Q  Y  V  P  F  V  I  N  A  M  R  N  I  Q  N  A  I  S  G  A  G  L  G  N  Q  I  K  V  S  T  A  I  E  T  E  L  T  T  D  T  Y  P  P  S  R  G  K  F  K  D  N  V  R  G  Y  V  D  P  I  I  R  F  L  V  A  N  R  S  P  L  L  V  N  I  Y  P  Y  F  A  I  A  N  N  Q  A  I  K  L  D  Y  A  L  F  T  S  P  G  V  V  V  N  D  N  G  R  E  Y  R  N  L  F  D  A  L  L  D  A  T  Y  S  A  L  E  K  A  G  G  S  S  L  D  I  V  V  S  E  S  G  W  P  S  A  G  A  G  Q  L  T  S  I  D  N  A  R  T  Y  N  N  N  L  I  R  H  V  K  R  G  S  P  K  R  P  S  K  P  I  E  A  Y  I  F  A  L  F  N  E  N  L  K  S  P  E  I  E  K  H  F  G  L  F  T  P  N  R  Q  P  K  Y  P  I  S  F  N  *  L  D  Y  A  T  E  *  E  L  V  D  L  F  F  L  *  Y  V  V  E  *  S  N  R  C  S  T  *  K  Q  S  N  P  S  H  D  M  Y  S  S  Y  M  L  I  *  G  N  Y  F  Y  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50881" stop="50983"/>
                    <exon start="51107" stop="52059"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLPITMACTKLHFPITATTLLVILILATLDFTGAQTGVCYGRNGNGLPSPADVVALCNRNNIRRMRIYDPHQPTLQALRGSNIELILGVPNPDLQNIASSQANANAWVQNNVRNYGNVKFRYIAVGNEVSPLNGNAQYVPFVINAMRNIQNAISGAGLGNQIKVSTAIETELTTDTYPPSRGKFKDNVRGYVDPIIRFLVANRSPLLVNIYPYFAIANNQAIKLDYALFTSPGVVVNDNGREYRNLFDALLDATYSALEKAGGSSLDIVVSESGWPSAGAGQLTSIDNARTYNNNLIRHVKRGSPKRPSKPIEAYIFALFNENLKSPEIEKHFGLFTPNRQPKYPISFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="52218" PGL_stop="51337"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52218" e_stop="51337"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="52218" e_stop="51337" e_length="882"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52218" stop="51417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52178" stop="51337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690718" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTGAGTTAGTAGAAATAATTGCCTTATATAAGCATGTAGGATGAGTACATATCATGCGAAGGGTTGCTCTGTTTTCAAGTTGAGCAACGATTCGATTATTCAACTACATATTATAAGAAGAAAAGATCGACTAACTCTTATTCCGTAGCATAGTCTAGCTAGTTGAAACTGATTGGGTATTTTGGCTGCCTGTTTGGTGTAAACAGTCCAAAATGTTTCTCAATTTCAGGGCTCTTGAGATTTTCATTAAACAAGGCGAAAATGTAAGCCTCAATAGGCTTTGATGGTCTTTTCGGACTCCCTCTTTTCACATGTCTAATCAAGTTGTTGTTGTAAGTCCTCGCGTTGTCAATAGAGGTCAATTGCCCTGCTCCAGCTGAAGGCCAACCGCTCTCTGATACAACGATATCCAAAGATGAACCACCGGCTTTTTCAAGGGCCGAGTATGTAGCATCTAAGAGTGCATCAAATAAGTTGCGGTATTCTCTTCCATTATCATTCACAACAACTCCAGGGGATGTAAACAACGCGTAGTCAAGCTTAATAGCTTGATTGTTTGCTATTGCAAAGTATGGATATATGTTGACAAGTAAAGGTGAGCGGTTAGCTACTAAGAATCTAATGATGGGATCAACATACCCTCGGACGTTGTCTTTAAACTTGCCTCTTGATGGAGGGTAAGTATCTGTAGTAAGTTCGGTTTCAATAGCAGTAGAAACTTTGATCTGGTTTCCTAGACCAGCGCCAGAAATCGCGTTCTGAATGTTTCTCATTGCATTGATCACGAAAGGCACATACTGCGCGTTGCCATTTAATGGACTAACTTCATTTCCAACAGCTATATACCTGAACTTAACATTACCATAGTTCCTAACATTGTT</gDNA_template>
            <first_frame> P  E  L  V  E  I  I  A  L  Y  K  H  V  G  *  V  H  I  M  R  R  V  A  L  F  S  S  *  A  T  I  R  L  F  N  Y  I  L  *  E  E  K  I  D  *  L  L  F  R  S  I  V  *  L  V  E  T  D  W  V  F  W  L  P  V  W  C  K  Q  S  K  M  F  L  N  F  R  A  L  E  I  F  I  K  Q  G  E  N  V  S  L  N  R  L  *  W  S  F  R  T  P  S  F  H  M  S  N  Q  V  V  V  V  S  P  R  V  V  N  R  G  Q  L  P  C  S  S  *  R  P  T  A  L  *  Y  N  D  I  Q  R  *  T  T  G  F  F  K  G  R  V  C  S  I  *  E  C  I  K  *  V  A  V  F  S  S  I  I  I  H  N  N  S  R  G  C  K  Q  R  V  V  K  L  N  S  L  I  V  C  Y  C  K  V  W  I  Y  V  D  K  *  R  *  A  V  S  Y  *  E  S  N  D  G  I  N  I  P  S  D  V  V  F  K  L  A  S  *  W  R  V  S  I  C  S  K  F  G  F  N  S  S  R  N  F  D  L  V  S  *  T  S  A  R  N  R  V  L  N  V  S  H  C  I  D  H  E  R  H  I  L  R  V  A  I  *  W  T  N  F  I  S  N  S  Y  I  P  E  L  N  I  T  I  V  P  N  I  V </first_frame>
            <second_frame>  L  S  *  *  K  *  L  P  Y  I  S  M  *  D  E  Y  I  S  C  E  G  L  L  C  F  Q  V  E  Q  R  F  D  Y  S  T  T  Y  Y  K  K  K  R  S  T  N  S  Y  S  V  A  *  S  S  *  L  K  L  I  G  Y  F  G  C  L  F  G  V  N  S  P  K  C  F  S  I  S  G  L  L  R  F  S  L  N  K  A  K  M  *  A  S  I  G  F  D  G  L  F  G  L  P  L  F  T  C  L  I  K  L  L  L  *  V  L  A  L  S  I  E  V  N  C  P  A  P  A  E  G  Q  P  L  S  D  T  T  I  S  K  D  E  P  P  A  F  S  R  A  E  Y  V  A  S  K  S  A  S  N  K  L  R  Y  S  L  P  L  S  F  T  T  T  P  G  D  V  N  N  A  *  S  S  L  I  A  *  L  F  A  I  A  K  Y  G  Y  M  L  T  S  K  G  E  R  L  A  T  K  N  L  M  M  G  S  T  Y  P  R  T  L  S  L  N  L  P  L  D  G  G  *  V  S  V  V  S  S  V  S  I  A  V  E  T  L  I  W  F  P  R  P  A  P  E  I  A  F  *  M  F  L  I  A  L  I  T  K  G  T  Y  C  A  L  P  F  N  G  L  T  S  F  P  T  A  I  Y  L  N  L  T  L  P  *  F  L  T  L   </second_frame>
            <third_frame>   *  V  S  R  N  N  C  L  I  *  A  C  R  M  S  T  Y  H  A  K  G  C  S  V  F  K  L  S  N  D  S  I  I  Q  L  H  I  I  R  R  K  D  R  L  T  L  I  P  *  H  S  L  A  S  *  N  *  L  G  I  L  A  A  C  L  V  *  T  V  Q  N  V  S  Q  F  Q  G  S  *  D  F  H  *  T  R  R  K  C  K  P  Q  *  A  L  M  V  F  S  D  S  L  F  S  H  V  *  S  S  C  C  C  K  S  S  R  C  Q  *  R  S  I  A  L  L  Q  L  K  A  N  R  S  L  I  Q  R  Y  P  K  M  N  H  R  L  F  Q  G  P  S  M  *  H  L  R  V  H  Q  I  S  C  G  I  L  F  H  Y  H  S  Q  Q  L  Q  G  M  *  T  T  R  S  Q  A  *  *  L  D  C  L  L  L  Q  S  M  D  I  C  *  Q  V  K  V  S  G  *  L  L  R  I  *  *  W  D  Q  H  T  L  G  R  C  L  *  T  C  L  L  M  E  G  K  Y  L  *  *  V  R  F  Q  *  Q  *  K  L  *  S  G  F  L  D  Q  R  Q  K  S  R  S  E  C  F  S  L  H  *  S  R  K  A  H  T  A  R  C  H  L  M  D  *  L  H  F  Q  Q  L  Y  T  *  T  *  H  Y  H  S  S  *  H  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51881" stop="51684"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLALSIEVNCPAPAEGQPLSDTTISKDEPPAFSRAEYVASKSASNKLRYSLPLSFTTTPGDVNNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="62581" PGL_stop="59238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62581" e_stop="62345"/>
            <exon e_start="61781" e_stop="61564"/>
            <exon e_start="61437" e_stop="61237"/>
            <exon e_start="60594" e_stop="60382"/>
            <exon e_start="59391" e_stop="59238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.962"/>
          <exon-intron don_prob="0.994" acc_prob="0.734" e_score="0.959"/>
          <exon-intron don_prob="0.957" acc_prob="0.785" e_score="0.965"/>
          <exon-intron don_prob="0.942" acc_prob="0.999" e_score="0.981"/>
          <exon-only e_score="0.877"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="62581" e_stop="62345" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563"/>
          </intron>
          <exon e_serial="2" e_score="0.959">
            <gDNA_exon_boundary e_start="61781" e_stop="61564" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.734">
            <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="0.965">
            <gDNA_exon_boundary e_start="61437" e_stop="61237" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.785">
            <gDNA_intron_boundary i_start="61236" i_stop="60595" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="0.981">
            <gDNA_exon_boundary e_start="60594" e_stop="60382" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.999">
            <gDNA_intron_boundary i_start="60381" i_stop="59392" i_length="990"/>
          </intron>
          <exon e_serial="5" e_score="0.877">
            <gDNA_exon_boundary e_start="59391" e_stop="59238" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62581" stop="62345"/>
              <exon start="61781" stop="61665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62577" stop="62345"/>
              <exon start="61781" stop="61564"/>
              <exon start="61437" stop="61370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62572" stop="62345"/>
              <exon start="61781" stop="61564"/>
              <exon start="61437" stop="61239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62436" stop="62345"/>
              <exon start="61781" stop="61564"/>
              <exon start="61437" stop="61237"/>
              <exon start="60594" stop="60473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61650" stop="61564"/>
              <exon start="61437" stop="61237"/>
              <exon start="60594" stop="60382"/>
              <exon start="59391" stop="59238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573415" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCCATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTG : GAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAG : GCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAG : ATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTTAGAATTTAAGTCAGCATATGGCTATCTTTCAGGGGAAAGAGGAATCCATTGCATGAATGGAAGTTCTGAAGGTAAATTTGATCTTTCAAAG : GATGGAGCTGCTGCAATCGATGTTATTCCTCTTTTTCTTGAATCATCCCCTGACCTCCAAATTGATGAAAACGATCTAGAAATTACAACATCGTATGAAGAGGAACGGGGTAGGACTTCCCCTTCACTCATTATTCATCATATACCAACAGGAT</gDNA_template>
            <first_frame> L  H  L  P  K  P  V  F  F  A  A  A  G  K  S  R  N  I  L  S  T  T  S  L  L  P  V  W  L  K  W  R  L  T  L  F  L  Y  G  *  K  L  L  V  R  L  V  H  *  T  F  E  A  Q  R  Q  Q  L  F  E  F  K  L  I  I  I  S  T  Q  M  T  R  T  D  S  T  K  S  L  :  E  H  L  L  *  K  G  R  L  K  I  W  Y  S  V  L  K  C  *  H  Q  Q  H  W  N  L  K  K  Q  D  A  S  N  R  K  K  L  F  G  N  M  I  C  G  M  M  *  P  S  Q  M  R  T  L  C  N  *  L  K  A  P  R  P  L  M  P  S  K  T  L  D  T  R :   L  K  K  L  S  *  L  R  S  *  Q  E  W  I  L  S  T  M  T  F  *  S  R  L  I  Q  L  V  S  V  *  I  R  H  *  I  S  M  K  C  P  S  F  L  G  S  H  M  I  W  R  E  H  V  S  P  L  N  L  E  A  R  A  F  T  R  R :   F  G  Q  K  N  S  Q  E  C  I  S  N  G  Q  K  N  K  V  I  R  R  G  *  L  R  N  K  I  Q  R  V  V  V  S  N  M  *  *  L  S  *  N  L  S  Q  H  M  A  I  F  Q  G  K  E  E  S  I  A  *  M  E  V  L  K  V  N  L  I  F  Q  R :   M  E  L  L  Q  S  M  L  F  L  F  F  L  N  H  P  L  T  S  K  L  M  K  T  I  *  K  L  Q  H  R  M  K  R  N  G  V  G  L  P  L  H  S  L  F  I  I  Y  Q  Q  D </first_frame>
            <second_frame>  S  I  Y  Q  N  P  C  S  S  R  R  P  E  N  Q  E  T  F  Y  P  P  P  V  Y  Y  Q  Y  G  *  N  G  G  *  P  F  F  C  T  D  R  S  Y  L  F  V  L  S  I  E  P  S  K  L  K  D  S  N  F  S  N  S  S  S  *  *  S  A  H  R  *  Q  E  Q  I  L  Q  R  A  W :   N  I  C  F  E  K  E  D  *  R  F  G  T  P  C  *  N  V  S  T  N  S  T  G  I  *  R  S  K  T  P  Q  T  G  R  N  Y  S  G  I  *  F  V  G  *  C  S  Q  V  K  *  G  P  C  A  I  S  *  K  R  Q  G  R  *  C  P  Q  R  P  *  I  Q   : G  *  R  S  *  V  D  Y  G  A  S  R  N  G  F  Y  Q  L  *  L  S  K  A  G  L  Y  S  L  C  Q  C  E  *  D  I  R  *  V  *  N  V  Q  A  S  *  G  A  I  *  Y  G  G  S  M  C  H  H  *  I  W  K  R  G  H  L  L  E   : D  L  G  R  K  T  H  K  N  V  Y  Q  M  G  R  K  T  R  S  *  G  E  D  S  *  E  T  R  F  R  E  W  W  Y  Q  I  C  D  D  *  V  R  I  *  V  S  I  W  L  S  F  R  G  K  R  N  P  L  H  E  W  K  F  *  R  *  I  *  S  F  K   : G  W  S  C  C  N  R  C  Y  S  S  F  S  *  I  I  P  *  P  P  N  *  *  K  R  S  R  N  Y  N  I  V  *  R  G  T  G  *  D  F  P  F  T  H  Y  S  S  Y  T  N  R   </second_frame>
            <third_frame>   P  F  T  K  T  R  V  L  R  G  G  R  K  I  K  K  H  F  I  H  H  Q  S  T  T  S  M  A  K  M  A  A  D  P  F  S  V  R  I  E  A  T  C  S  S  C  P  L  N  L  R  S  S  K  T  A  T  F  R  I  Q  A  H  N  N  Q  H  T  D  D  K  N  R  F  Y  K  E  L   : G  T  F  A  L  K  R  K  I  E  D  L  V  L  R  A  E  M  L  A  P  T  A  L  E  F  E  E  A  R  R  L  K  Q  E  E  I  I  R  E  Y  D  L  W  D  D  V  A  K  S  N  E  D  L  V  Q  L  A  E  S  A  K  A  V  D  A  L  K  D  L  R  Y  K  :  A  E  E  A  K  L  I  T  E  L  A  G  M  D  S  I  N  Y  D  F  L  K  Q  A  Y  T  A  C  V  S  V  N  K  T  L  D  K  Y  E  M  S  K  L  L  R  E  P  Y  D  M  E  G  A  C  V  T  I  E  S  G  S  E  G  I  Y  S  K  :  I  W  A  E  K  L  T  R  M  Y  I  K  W  A  E  K  Q  G  H  K  A  R  I  V  E  K  Q  D  S  E  S  G  G  I  K  Y  V  M  I  E  L  E  F  K  S  A  Y  G  Y  L  S  G  E  R  G  I  H  C  M  N  G  S  S  E  G  K  F  D  L  S  K  :  D  G  A  A  A  I  D  V  I  P  L  F  L  E  S  S  P  D  L  Q  I  D  E  N  D  L  E  I  T  T  S  Y  E  E  E  R  G  R  T  S  P  S  L  I  I  H  H  I  P  T  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62579" stop="62345"/>
                    <exon start="61781" stop="61564"/>
                    <exon start="61437" stop="61237"/>
                    <exon start="60594" stop="60382"/>
                    <exon start="59391" stop="59239"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1020</number_coding_nucleotides>
                  <number_encoded_amino_acids>340</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFTKTRVLRGGRKIKKHFIHHQSTTSMAKMAADPFSVRIEATCSSCPLNLRSSKTATFRIQAHNNQHTDDKNRFYKELGTFALKRKIEDLVLRAEMLAPTALEFEEARRLKQEEIIREYDLWDDVAKSNEDLVQLAESAKAVDALKDLRYKAEEAKLITELAGMDSINYDFLKQAYTACVSVNKTLDKYEMSKLLREPYDMEGACVTIESGSEGIYSKIWAEKLTRMYIKWAEKQGHKARIVEKQDSESGGIKYVMIELEFKSAYGYLSGERGIHCMNGSSEGKFDLSKDGAAAIDVIPLFLESSPDLQIDENDLEITTSYEEERGRTSPSLIIHHIPTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="67685" PGL_stop="65003"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67685" e_stop="67571"/>
            <exon e_start="66370" e_stop="66178"/>
            <exon e_start="65390" e_stop="65003"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="0.878"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="67685" e_stop="67571" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="67570" i_stop="66371" i_length="1200"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66370" e_stop="66178" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787"/>
          </intron>
          <exon e_serial="3" e_score="0.887">
            <gDNA_exon_boundary e_start="65390" e_stop="65003" e_length="388"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67685" stop="67571"/>
              <exon start="66370" stop="66178"/>
              <exon start="65390" stop="65052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66365" stop="66178"/>
              <exon start="65390" stop="65003"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429974" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66365" stop="66178"/>
              <exon start="65390" stop="65186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747467" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCATTTTCGATATTCAGAAGCCCAGTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCG : GTCACATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAG : ACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCAGTACAATTTGATCAATTGTCATCACTCTTGATGCTTAATTGACTTACCTTTCCTGTTGCACACTTCTGCAGTGACACAAACTTCCCAAAAATAAAAGGGCAGTTCGGTGCATGATG</gDNA_template>
            <first_frame> L  I  F  D  I  Q  K  P  S  K  L  S  V  K  N  I  I  Q  I  P  A  A  S  R  L  F  A  D  Q  K  P  V  I  A  K  P  S  S   : G  H  M  D  M  P  K  G  D  K  L  V  L  R  G  L  K  F  H  G  Y  H  G  V  K  Q  E  E  R  K  L  G  Q  K  F  L  V  D  V  D  A  W  M  D  L  R  S  A  G  E  S  D  C  L  S  D  T  L  S  Y  T  D  I  Y  R :   L  V  K  E  V  M  E  G  P  P  K  N  L  L  E  S  V  A  Q  L  I  A  S  T  T  L  T  K  Y  P  E  V  S  A  V  R  V  Q  V  G  K  P  H  V  A  V  Q  G  P  V  D  Y  L  G  V  E  I  I  R  Y  R  S  L  D  V  Q  N  *  D  S  N  M  L  C  I  I  S  N  F  K  F  L  L  F  D  N  H  F  Q  A  S  T  I  *  S  I  V  I  T  L  D  A  *  L  T  Y  L  S  C  C  T  L  L  Q  *  H  K  L  P  K  N  K  R  A  V  R  C  M  M </first_frame>
            <second_frame>  S  F  S  I  F  R  S  P  V  N  F  Q  *  K  I  L  F  R  F  R  R  L  P  G  C  S  P  T  K  S  Q  *  *  Q  N  P  A  P  :  V  T  W  T  C  Q  K  E  T  N  L  F  *  G  V  *  N  F  M  D  T  M  G  *  S  K  R  K  G  S  L  V  R  S  S  W  *  M  L  M  L  G  W  I  F  D  L  L  V  N  P  T  A  C  P  I  L  *  V  I  L  I  Y  T   : D  *  L  K  R  L  W  R  G  H  L  K  I  C  *  N  L  W  L  N  S  L  H  R  Q  P  S  P  S  I  Q  R  Y  L  L  F  A  F  K  L  E  S  L  M  W  P  S  K  G  L  L  T  T  W  V  S  R  S  L  D  T  E  V  L  M  F  K  T  R  T  V  I  C  F  V  L  L  A  T  S  N  F  C  C  L  T  I  I  F  K  P  V  Q  F  D  Q  L  S  S  L  L  M  L  N  *  L  T  F  P  V  A  H  F  C  S  D  T  N  F  P  K  I  K  G  Q  F  G  A  *   </second_frame>
            <third_frame>   H  F  R  Y  S  E  A  Q  *  T  F  S  K  K  Y  Y  S  D  S  G  G  F  P  A  V  R  R  P  K  A  S  N  S  K  T  Q  L  R :   S  H  G  H  A  K  R  R  Q  T  C  S  K  G  F  K  I  S  W  I  P  W  G  E  A  R  G  K  E  A  W  S  E  V  P  G  R  C  *  C  L  D  G  S  S  I  C  W  *  I  R  L  L  V  R  Y  S  K  L  Y  *  Y  I  Q  :  T  S  *  R  G  Y  G  G  A  T  *  K  S  A  R  I  C  G  S  T  H  C  I  D  N  P  H  Q  V  S  R  G  I  C  C  S  R  S  S  W  K  A  S  C  G  R  P  R  A  C  *  L  L  G  C  R  D  H  *  I  Q  K  S  *  C  S  K  L  G  Q  *  Y  A  L  Y  Y  *  Q  L  Q  I  S  A  V  *  Q  S  F  S  S  Q  Y  N  L  I  N  C  H  H  S  *  C  L  I  D  L  P  F  L  L  H  T  S  A  V  T  Q  T  S  Q  K  *  K  G  S  S  V  H  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67685" stop="67571"/>
                    <exon start="66370" stop="66178"/>
                    <exon start="65390" stop="65186"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIFDIQKPSKLSVKNIIQIPAASRLFADQKPVIAKPSSGHMDMPKGDKLVLRGLKFHGYHGVKQEERKLGQKFLVDVDAWMDLRSAGESDCLSDTLSYTDIYRLVKEVMEGPPKNLLESVAQLIASTTLTKYPEVSAVRVQVGKPHVAVQGPVDYLGVEIIRYRSLDVQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="71223" PGL_stop="68719"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71223" e_stop="71218"/>
            <exon e_start="71041" e_stop="70985"/>
            <exon e_start="69970" e_stop="69612"/>
            <exon e_start="69300" e_stop="68887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.735" acc_prob="0.000" e_score="0.833"/>
          <exon-intron don_prob="0.980" acc_prob="0.862" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.833">
            <gDNA_exon_boundary e_start="71223" e_stop="71218" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.735" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71217" i_stop="71042" i_length="176"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71041" e_stop="70985" e_length="57"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.862">
            <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69970" e_stop="69612" e_length="359"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69300" e_stop="68887" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71223" stop="71218"/>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71036" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71036" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71032" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71030" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68937"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69748" stop="69612"/>
              <exon start="69300" stop="68911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290341" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69734" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69703" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69682" stop="69612"/>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69201" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCCG : ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG : GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</gDNA_template>
            <first_frame> L  P  :  I  S  Y  V  Y  E  F  V  S  V  A  E  E  Q  K  I  C  L  K  :  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L   </first_frame>
            <second_frame>  C  R :   F  H  T  C  T  S  S  S  L  *  L  K  N  K  K  S  V  *  R :   Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  </second_frame>
            <third_frame>   A   : D  F  I  R  V  R  V  R  L  C  S  *  R  T  K  N  L  F  K   : G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="69975" e_stop="69612"/>
            <exon e_start="69300" e_stop="68887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69975" e_stop="69612" e_length="364"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="69300" e_stop="68887" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69975" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="69039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69903" stop="69612"/>
              <exon start="69300" stop="69217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69896" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391051" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69879" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69875" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69846" stop="69612"/>
              <exon start="69300" stop="68939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69801" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69796" stop="69612"/>
              <exon start="69300" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69748" stop="69612"/>
              <exon start="69300" stop="68911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290341" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69734" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69703" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69682" stop="69612"/>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69201" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</gDNA_template>
            <first_frame> F  R  Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  </first_frame>
            <second_frame>  L  G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K </second_frame>
            <third_frame>   *  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="71002" e_stop="70944"/>
            <exon e_start="69970" e_stop="69612"/>
            <exon e_start="69300" e_stop="68887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.476" acc_prob="0.862" e_score="0.898"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.898">
            <gDNA_exon_boundary e_start="71002" e_stop="70944" e_length="59"/>
          </exon>
          <intron i_serial="1" don_prob="0.476" acc_prob="0.862">
            <gDNA_intron_boundary i_start="70943" i_stop="69971" i_length="973"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69970" e_stop="69612" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="69300" e_stop="68887" e_length="414"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71002" stop="70944"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="69039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69903" stop="69612"/>
              <exon start="69300" stop="69217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69896" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391051" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69879" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69875" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69846" stop="69612"/>
              <exon start="69300" stop="68939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69801" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69796" stop="69612"/>
              <exon start="69300" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69748" stop="69612"/>
              <exon start="69300" stop="68911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290341" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69734" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69703" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69682" stop="69612"/>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69201" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAA : GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</gDNA_template>
            <first_frame> Q  K  I  C  L  K  V  L  *  K  R  H  Y  S  F  I  Q  A  F  K :   Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  </first_frame>
            <second_frame>  K  K  S  V  *  R  Y  C  K  N  A  I  I  A  S  F  K  L  S   : S  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K </second_frame>
            <third_frame>   K  N  L  F  K  G  I  V  K  T  P  L  *  L  H  S  S  F  Q  :  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="70022" e_stop="69612"/>
            <exon e_start="69300" e_stop="68893"/>
            <exon e_start="68723" e_stop="68719"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.509" acc_prob="0.997" e_score="0.982"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="70022" e_stop="69612" e_length="411"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="69300" e_stop="68893" e_length="408"/>
          </exon>
          <intron i_serial="2" don_prob="0.509" acc_prob="0.997">
            <gDNA_intron_boundary i_start="68892" i_stop="68724" i_length="169"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="68723" e_stop="68719" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70022" stop="69612"/>
              <exon start="69300" stop="68893"/>
              <exon start="68723" stop="68719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69975" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68922"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442211" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="69248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69612"/>
              <exon start="69300" stop="68918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69930" stop="69612"/>
              <exon start="69300" stop="69039"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69903" stop="69612"/>
              <exon start="69300" stop="69217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69896" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391051" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69879" stop="69612"/>
              <exon start="69300" stop="68910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390890" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69875" stop="69612"/>
              <exon start="69300" stop="69117"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69846" stop="69612"/>
              <exon start="69300" stop="68939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69801" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431394" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69796" stop="69612"/>
              <exon start="69300" stop="68935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577081" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69748" stop="69612"/>
              <exon start="69300" stop="68911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290341" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69734" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69703" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69692" stop="69612"/>
              <exon start="69300" stop="68934"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357517" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69687" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69682" stop="69612"/>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69678" stop="69612"/>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218129" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGA : GAACA</gDNA_template>
            <first_frame> Y  S  V  C  H  A  L  T  C  F  L  F  Y  R  K  T  L  G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  :  E   </first_frame>
            <second_frame>  I  R  Y  V  M  H  *  R  V  F  C  F  I  E  K  L  *  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E :   N  </second_frame>
            <third_frame>   F  G  M  S  C  T  N  V  F  F  V  L  S  K  N  F  R  Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L   : R  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71041" e_stop="70985"/>
            <exon e_start="69970" e_stop="68887"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="71041" e_stop="70985" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.862">
            <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="69970" e_stop="68887" e_length="1084"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71037" stop="70985"/>
              <exon start="69970" stop="68923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71026" stop="70985"/>
              <exon start="69970" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71020" stop="70985"/>
              <exon start="69970" stop="69368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71020" stop="70985"/>
              <exon start="69970" stop="69409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71020" stop="70985"/>
              <exon start="69970" stop="69499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71018" stop="70985"/>
              <exon start="69970" stop="69736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71017" stop="70985"/>
              <exon start="69970" stop="69705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71010" stop="70985"/>
              <exon start="69970" stop="69249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71008" stop="70985"/>
              <exon start="69970" stop="69143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71007" stop="70985"/>
              <exon start="69970" stop="69746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69970" stop="69730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69809" stop="68892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69808" stop="69144"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69302" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69300" stop="68894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69288" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69260" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69257" stop="68893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218129" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69201" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69195" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69137" stop="68887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217567" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG : GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAG</gDNA_template>
            <first_frame> I  S  Y  V  Y  E  F  V  S  V  A  E  E  Q  K  I  C  L  K  :  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W  Y  A  Q  S  V  Y  I  L  *  L  T  Y  S  Q  Q  K  D  N  V  R  F  A  W  F  T  E  V  L  V  Q  N  L  S  *  N  R  K  K  *  G  T  F  S  Q  L  D  L  Y  T  I  N  S  T  S  L  G  I  P  A  G  V  G  I  C  V  S  L  L  K  Q  D  G  K  I  P  T  C  L  V  L  V  V  I  I  F  G  V  Y  Y  G  Y  S  C  M  M  I  C  L  *  L  D  K  T  G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  </first_frame>
            <second_frame>  F  H  T  C  T  S  S  S  L  *  L  K  N  K  K  S  V  *  R :   Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y  G  M  H  N  L  S  I  S  C  N  *  P  T  V  S  R  K  I  M  F  G  L  H  G  L  L  K  F  *  C  R  T  C  L  E  T  E  K  S  E  E  P  L  V  N  *  I  F  I  L  *  T  Q  R  V  W  G  S  L  L  V  S  E  F  V  *  A  C  *  N  K  M  G  K  F  L  H  A  W  S  *  L  *  L  F  L  V  F  T  M  V  T  L  V  *  *  F  A  Y  N  L  I  K  Q  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K </second_frame>
            <third_frame>   F  I  R  V  R  V  R  L  C  S  *  R  T  K  N  L  F  K   : G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  V  C  T  I  C  L  Y  L  V  I  N  L  Q  S  A  E  R  *  C  S  V  C  M  V  Y  *  S  F  S  A  E  P  V  L  K  P  K  K  V  R  N  L  *  S  I  R  S  L  Y  Y  K  L  N  E  S  G  D  P  C  W  C  R  N  L  C  E  P  V  E  T  R  W  E  N  S  Y  M  P  G  L  S  C  D  Y  F  W  C  L  L  W  L  L  L  Y  D  D  L  L  I  T  *  *  N  R  F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGMHNLSISCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="74939" PGL_stop="74465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74939" e_stop="74465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74939" e_stop="74465" e_length="475"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74939" stop="74465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74938" stop="74474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74938" stop="74474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371931" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74936" stop="74495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATCATATCTATT</gDNA_template>
            <first_frame> F  F  L  I  S  S  L  M  A  G  L  Q  Y  K  F  F  P  T  D  F  F  F  P  I  Q  K  T  V  S  G  E  N  T  S  K  Q  N  L  L  I  K  I  R  N  N  D  E  S  L  I  E  E  S  K  G  K  I  V  I  N  N  N  K  K  N  L  K  A  I  S  S  S  S  L  A  L  I  S  V  P  K  Q  K  K  D  Q  D  *  S  T  D  Y  S  F  N  H  I  V  I  N  C  M  I  K  N  N  L  V  L  F  A  I  F  S  P  I  F  F  S  L  S  L  I  N  I  *  E  A  F  G  K  S  Y  *  I  L  F  D  V  L  Y  K  F  A  I  Q  *  D  R  N  N  S  F  Y  D  H  I  Y  </first_frame>
            <second_frame>  F  F  *  L  A  L  *  W  L  V  F  N  T  N  F  F  Q  Q  I  F  S  S  Q  F  K  K  Q  L  V  E  K  T  H  Q  S  K  I  S  *  S  R  L  E  I  M  M  S  P  *  L  R  N  Q  R  A  K  L  S  L  T  T  T  R  R  I  S  K  L  F  L  H  L  H  *  L  *  F  L  C  Q  N  R  R  K  I  K  I  N  Q  L  I  I  L  L  I  I  *  *  L  I  V  *  L  R  I  I  L  F  S  L  L  S  F  L  L  F  F  F  L  *  V  *  *  I  F  R  R  L  L  G  K  V  I  R  F  C  L  M  Y  Y  I  S  L  Q  F  N  K  T  G  T  I  V  S  M  I  I  S  I </second_frame>
            <third_frame>   F  F  N  *  L  F  D  G  W  S  S  I  Q  I  F  S  N  R  F  F  L  P  N  S  K  N  S  *  W  R  K  H  I  K  A  K  S  L  N  Q  D  *  K  *  *  *  V  L  N  *  G  I  K  G  Q  N  C  H  *  Q  Q  Q  E  E  S  Q  S  Y  F  F  I  F  I  S  F  D  F  C  A  K  T  E  E  R  S  R  L  I  N  *  L  F  F  *  S  Y  S  N  *  L  Y  D  *  E  *  S  C  S  L  C  Y  L  F  S  Y  F  F  F  F  E  F  N  K  Y  L  G  G  F  W  E  K  L  L  D  F  V  *  C  I  I  *  V  C  N  S  I  R  Q  E  Q  *  F  L  *  S  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74939" stop="74676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLISSLMAGLQYKFFPTDFFFPIQKTVSGENTSKQNLLIKIRNNDESLIEESKGKIVINNNKKNLKAISSSSLALISVPKQKKDQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="79618" PGL_stop="78824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79618" e_stop="78824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="79618" e_stop="78824" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79618" stop="78878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79559" stop="78824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79559" stop="78864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350936" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79559" stop="78865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACAG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  R  H  H  *  *  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  R  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  Q </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  V  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N   </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  P  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79617" stop="78826"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESVITDNGANLNSHLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="85704" PGL_stop="86239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85704" e_stop="86239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="85704" e_stop="86239" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85704" stop="86239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGATGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCTAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAGAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAGCACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  N  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  M  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  *  L  Y  *  H  R  S  V  K  R  Y  L  R  G  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  S  T  Q  V  V  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </first_frame>
            <second_frame>  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  I  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  C  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  G  T  *  E  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  A  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  *  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </second_frame>
            <third_frame>   A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  L  A  L  L  T  Q  I  S  K  K  V  P  E  R  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  R  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85737" stop="85955"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISNISTKSRWRRILSPLHFNFHFSNLLHQLHDQFVLFHYSGLSHHNVSKMPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="86544" PGL_stop="86929"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86544" e_stop="86929"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="86544" e_stop="86929" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86544" stop="86929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCT</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  F  F  F  I  I  L  L  S  H  F  T  V  G  A  T  V  I  C  S  Q  I  M  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  V  S  V  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  C  C  D  R  S  F  V  D  R  R  G  R  V  Y  F  E  S  F  L  L  N  P  L  N   </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  S  S  S  S  S  S  S  V  T  S  R  S  G  P  L  L  S  A  P  R  S  W  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  S  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  N  V  V  T  A  A  L  *  I  A  V  V  A  S  T  L  S  P  S  S  L  T  L  *  I  </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  L  L  H  H  P  P  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  M  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86546" stop="86863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFLLHHPPQSLHGRGHCYLLPDHGRGIFRPLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVTPDLHPML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86563" stop="86877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSSSVTSRSGPLLSAPRSWARYFPPFGSLWVANSSSSAAFLSNNTAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSNVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86544" stop="86792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYFFFIILLSHFTVGATVICSQIMGEVFSALWVAMGRQFLVERRVSVQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="90455" PGL_stop="90180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90455" e_stop="90287"/>
            <exon e_start="90218" e_stop="90180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.998" e_score="0.923"/>
          <exon-only e_score="0.462"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="90455" e_stop="90287" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="90286" i_stop="90219" i_length="68"/>
          </intron>
          <exon e_serial="2" e_score="0.462">
            <gDNA_exon_boundary e_start="90218" e_stop="90180" e_length="39"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90455" stop="90287"/>
              <exon start="90218" stop="90180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90455" stop="90287"/>
              <exon start="90218" stop="90180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90455" stop="90287"/>
              <exon start="90218" stop="90180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGAGTTCACCACGAACTCTCCTTCTCCGTATCTCGAGAGAGTCGTAAAGACTCATAGTCTTTTACCAAGCAAGACAACCTTAAGAGAGGCGTACAAGTCATGAAGTTGGAAGGAGAATCCAAAGTGGATTAGAAGACGTTTCTTTATTTTATTTCCGTATTTTATTTT : ACTAGGACAGGTGGCAAAATGGGTCGAAACACCCAAAAA</gDNA_template>
            <first_frame> L  S  S  P  R  T  L  L  L  R  I  S  R  E  S  *  R  L  I  V  F  Y  Q  A  R  Q  P  *  E  R  R  T  S  H  E  V  G  R  R  I  Q  S  G  L  E  D  V  S  L  F  Y  F  R  I  L  F   : Y  *  D  R  W  Q  N  G  S  K  H  P  K  </first_frame>
            <second_frame>  *  V  H  H  E  L  S  F  S  V  S  R  E  S  R  K  D  S  *  S  F  T  K  Q  D  N  L  K  R  G  V  Q  V  M  K  L  E  G  E  S  K  V  D  *  K  T  F  L  Y  F  I  S  V  F  Y  F  :  T  R  T  G  G  K  M  G  R  N  T  Q  K </second_frame>
            <third_frame>   E  F  T  T  N  S  P  S  P  Y  L  E  R  V  V  K  T  H  S  L  L  P  S  K  T  T  L  R  E  A  Y  K  S  *  S  W  K  E  N  P  K  W  I  R  R  R  F  F  I  L  F  P  Y  F  I  L :   L  G  Q  V  A  K  W  V  E  T  P  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="97507" PGL_stop="97203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97507" e_stop="97203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="97507" e_stop="97203" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97507" stop="97203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATAGGCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</gDNA_template>
            <first_frame> A  E  L  C  N  V  G  L  *  P  E  W  G  Q  Q  C  G  G  M  L  G  P  S  *  W  M  G  L  K  G  *  C  S  G  L  P  C  P  S  T  E  L  G  Q  V  V  Y  T  K  V  *  A  T  W  P  L  E  W  D  G  L  R  E  A  G  F  T  E  Q  R  L  V  P  A  L  C  S  G  R  I  T  G  *  C  S  L  S  P  N  K  N  L  I  G  C  L  I  K  P  S  L   </first_frame>
            <second_frame>  P  S  F  V  T  W  A  C  N  P  S  G  G  N  N  V  V  E  C  W  V  H  L  D  G  W  A  *  R  A  N  V  L  A  C  P  V  Q  A  Q  S  W  V  K  W  S  I  R  K  Y  R  P  L  G  L  *  S  G  M  D  C  V  R  L  V  S  Q  S  N  D  *  S  P  L  C  A  V  E  G  S  R  A  S  A  L  *  V  L  T  K  T  *  *  V  A  *  L  N  H  H  F  </second_frame>
            <third_frame>   R  A  L  *  R  G  L  V  T  R  V  G  A  T  M  W  W  N  V  G  S  I  L  M  D  G  L  E  G  L  M  F  W  P  A  L  S  K  H  R  V  G  S  S  G  L  Y  E  S  I  G  H  L  A  F  R  V  G  W  T  A  *  G  W  F  H  R  A  T  T  S  P  R  S  V  Q  W  K  D  H  G  L  V  L  F  E  S  *  Q  K  P  D  R  L  P  N  *  T  I  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="107315" PGL_stop="108128"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107315" e_stop="108128"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107315" e_stop="108128" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107315" stop="108128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731793" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATACAGTTGCTGAGTGTGTGCAACTTGAC</gDNA_template>
            <first_frame> L  Y  S  G  A  A  K  G  S  K  S  R  K  T  V  H  L  G  K  T  L  S  H  *  S  *  L  W  N  *  A  C  T  *  *  M  C  C  Y  S  E  S  H  A  *  T  E  K  E  C  R  E  S  G  C  C  F  S  R  L  V  K  H  C  Q  I  *  C  F  Q  K  N  S  F  L  E  L  H  C  T  R  E  F  N  R  F  P  *  R  L  S  C  G  C  C  C  F  T  S  S  R  R  Q  W  F  R  R  T  Y  H  Q  K  L  A  N  T  P  E  R  T  *  W  Q  *  Q  R  V  R  K  C  G  P  *  L  L  D  K  I  W  W  S  S  D  E  D  N  I  C  *  *  V  Y  R  L  C  P  E  L  G  D  W  F  T  I  E  Q  R  I  D  Y  *  P  Q  Q  S  R  S  S  D  G  W  *  R  P  V  L  P  E  P  K  G  I  N  S  R  *  N  F  R  H  R  I  *  S  K  R  L  Q  Y  *  S  P  R  G  *  F  K  H  Y  G  R  *  R  *  P  S  T  A  R  K  D  *  Q  R  Y  C  L  Q  R  G  K  K  R  R  R  N  P  I  E  *  K  P  R  F  R  K  *  Q  F  C  A  G  Y  S  C  *  V  C  A  T  *  </first_frame>
            <second_frame>  S  T  L  E  L  Q  K  A  A  N  Q  G  R  R  C  T  W  E  K  L  S  A  I  K  A  N  C  G  I  E  L  A  L  D  E  C  V  A  I  L  N  H  M  R  R  L  K  R  S  A  E  R  A  A  A  A  S  H  G  L  S  S  T  V  R  F  N  A  S  R  R  I  P  S  W  N  C  I  A  R  E  N  S  T  G  S  L  E  D  F  L  A  D  V  A  A  S  H  H  Q  G  G  S  G  S  G  A  H  T  T  R  N  W  R  T  H  R  S  A  H  D  G  S  D  S  E  S  E  N  V  D  L  N  S  W  T  R  S  G  G  P  L  M  R  T  T  S  A  D  K  F  I  D  F  V  Q  N  L  E  I  G  S  R  L  N  K  G  L  T  I  D  L  N  N  L  V  P  Q  M  A  G  R  D  L  F  S  P  S  P  R  V  S  T  P  D  R  T  S  D  T  E  F  D  Q  R  D  F  S  I  R  V  P  A  G  S  S  S  I  M  V  G  E  G  D  L  L  Q  P  E  R  T  N  N  G  I  V  F  N  V  V  R  K  G  D  V  T  P  S  N  R  S  L  D  S  E  N  N  S  S  V  Q  D  T  V  A  E  C  V  Q  L  D </second_frame>
            <third_frame>   L  L  W  S  C  K  R  Q  Q  I  K  E  D  G  A  L  G  K  N  S  Q  P  L  K  L  T  V  E  L  S  L  H  L  M  N  V  L  L  F  *  I  T  C  V  D  *  K  G  V  P  R  E  R  L  L  L  L  T  A  C  Q  A  L  S  D  L  M  L  P  E  E  F  L  L  G  T  A  L  H  E  R  I  Q  Q  V  P  L  K  T  F  L  R  M  L  L  L  H  I  I  K  E  A  V  V  P  A  H  I  P  P  E  I  G  E  H  T  G  A  H  M  M  A  V  T  A  S  P  K  M  W  T  L  T  L  G  Q  D  L  V  V  L  *  *  G  Q  H  L  L  I  S  L  S  T  L  S  R  T  W  R  L  V  H  D  *  T  K  D  *  L  L  T  S  T  I  S  F  L  R  W  L  V  E  T  C  S  P  R  A  Q  G  Y  Q  L  Q  I  E  L  Q  T  P  N  L  I  K  E  T  S  V  L  E  S  P  R  V  V  Q  A  L  W  *  V  K  V  T  F  Y  S  Q  K  G  L  T  T  V  L  S  S  T  W  *  E  K  E  T  *  P  H  R  I  E  A  S  I  Q  K  I  T  V  L  C  R  I  Q  L  L  S  V  C  N  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107316" stop="108128"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>813</number_coding_nucleotides>
                  <number_encoded_amino_acids>271</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLELQKAANQGRRCTWEKLSAIKANCGIELALDECVAILNHMRRLKRSAERAAAASHGLSSTVRFNASRRIPSWNCIARENSTGSLEDFLADVAASHHQGGSGSGAHTTRNWRTHRSAHDGSDSESENVDLNSWTRSGGPLMRTTSADKFIDFVQNLEIGSRLNKGLTIDLNNLVPQMAGRDLFSPSPRVSTPDRTSDTEFDQRDFSIRVPAGSSSIMVGEGDLLQPERTNNGIVFNVVRKGDVTPSNRSLDSENNSSVQDTVAECVQLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="110567" PGL_stop="111578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110567" e_stop="111578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="110567" e_stop="111578" e_length="1012"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110567" stop="111544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110567" stop="110943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110568" stop="111067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110582" stop="111450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110598" stop="111263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110667" stop="111180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110667" stop="111176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110670" stop="111327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110671" stop="111231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110681" stop="111095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110693" stop="111335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110708" stop="111325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110719" stop="111189"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110885" stop="111578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111269" stop="111578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219474" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111270" stop="111578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E219224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</gDNA_template>
            <first_frame> I  I  F  S  H  Y  E  V  S  W  K  F  T  M  A  F  Y  H  L  I  S  I  F  F  L  Y  L  I  H  S  S  F  L  V  F  S  F  S  I  S  L  S  H  P  P  *  L  *  S  S  S  K  T  S  P  K  S  S  S  T  T  K  K  L  D  Q  F  P  D  L  K  P  H  P  S  V  P  P  P  I  P  I  P  F  L  I  A  A  S  E  N  Q  P  D  H  L  L  Q  L  A  S  Y  R  T  K  S  L  L  R  K  *  F  T  L  S  *  S  M  R  F  T  *  W  I  L  T  A  T  V  R  *  G  R  K  S  W  K  R  F  *  A  E  S  G  L  N  H  R  V  R  R  N  S  C  C  C  L  K  K  L  M  L  T  E  M  D  V  L  V  Y  R  N  S  E  L  L  A  Q  R  L  D  R  R  R  V  I  L  S  *  E  M  L  L  I  S  S  M  P  I  T  T  G  R  S  R  R  M  S  C  L  A  C  L  G  R  S  E  I  H  G  A  R  *  R  S  A  G  V  *  *  E  V  W  I  K  M  V  M  G  L  Y  A  S  R  T  S  V  L  *  W  N  S  S  I  D  V  D  K  *  L  V  I  V  *  F  S  F  L  F  F  F  Q  F  R  *  K  S  V  F  V  L  R  V  G  I  *  L  E  S  N  Q  R  L  G  L  I  H  F  G  G  C  T  K  V  I  D  L  V  N  T  C  E  N  K  F  L  P  F  L  P  L  K  P  K  W  N  W  L  M  P  N  I  N  I  K  R  L  </first_frame>
            <second_frame>  S  F  S  L  T  T  K  F  P  G  N  S  P  W  L  S  T  I  *  S  P  S  S  S  S  I  S  Y  T  H  L  F  L  F  F  H  S  P  F  H  F  L  I  L  H  S  Y  E  A  P  Q  K  L  P  Q  K  A  L  Q  L  Q  K  N  S  I  N  F  Q  I  S  N  L  I  L  R  F  L  L  R  F  R  F  P  S  S  S  R  L  Q  K  T  N  R  I  I  Y  S  N  *  R  L  T  E  R  N  L  C  C  G  S  S  L  R  *  A  N  P  C  V  S  H  D  G  Y  *  R  R  R  *  D  K  E  G  R  A  G  S  D  F  K  Q  S  R  D  *  T  T  E  *  G  G  T  H  V  V  A  *  R  S  *  C  *  R  R  W  M  Y  *  F  T  G  I  R  S  Y  *  L  S  V  W  T  A  G  V  *  F  *  A  E  R  C  F  *  F  L  R  C  R  S  R  R  E  D  H  G  G  *  A  V  *  R  V  *  A  D  R  R  F  T  V  H  V  R  G  V  P  A  Y  D  K  R  C  G  *  K  W  *  W  V  C  M  L  R  G  L  L  Y  Y  D  G  T  A  A  *  M  L  I  S  N  W  *  S  F  D  S  P  F  F  S  F  F  N  F  G  E  K  V  C  L  F  *  G  W  G  F  D  *  N  L  I  N  G  *  D  *  S  I  L  E  V  V  P  K  L  L  I  S  *  I  H  V  R  T  N  S  S  L  F  Y  P  *  N  R  N  G  I  G  L  C  L  I  S  I  S  N  V  Y </second_frame>
            <third_frame>   H  F  L  S  L  R  S  F  L  E  I  H  H  G  F  L  P  F  N  L  H  L  L  P  L  S  H  T  L  I  F  S  C  F  F  I  L  H  F  T  F  S  S  S  I  A  M  K  L  L  K  N  F  P  K  K  L  F  N  Y  K  K  T  R  S  I  S  R  S  Q  T  S  S  F  G  S  S  S  D  S  D  S  L  P  H  R  G  F  R  K  P  T  G  S  S  T  P  T  S  V  L  P  N  E  I  S  A  A  E  V  V  Y  A  E  L  I  H  A  F  H  M  M  D  T  D  G  D  G  K  I  R  K  E  E  L  E  A  I  L  S  R  V  G  T  E  P  P  S  K  E  E  L  M  L  L  L  E  E  V  D  V  D  G  D  G  C  I  S  L  Q  E  F  G  A  I  S  S  A  F  G  P  P  A  C  D  S  E  L  R  D  A  F  D  F  F  D  A  D  H  D  G  K  I  T  A  D  E  L  F  S  V  F  R  Q  I  G  D  S  R  C  T  L  E  E  C  R  R  M  I  R  G  V  D  K  N  G  D  G  F  V  C  F  E  D  F  C  I  M  M  E  Q  Q  H  R  C  *  *  V  I  G  D  R  L  I  L  L  S  F  L  F  S  I  S  V  K  K  C  V  C  F  K  G  G  D  L  I  R  I  *  S  T  A  R  I  D  P  F  W  R  L  Y  Q  S  Y  *  S  R  K  Y  M  *  E  Q  I  P  P  F  F  T  P  E  T  E  M  E  L  A  Y  A  *  Y  Q  Y  Q  T  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110569" stop="111336"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFLSLRSFLEIHHGFLPFNLHLLPLSHTLIFSCFFILHFTFSSSIAMKLLKNFPKKLFNYKKTRSISRSQTSSFGSSSDSDSLPHRGFRKPTGSSTPTSVLPNEISAAEVVYAELIHAFHMMDTDGDGKIRKEELEAILSRVGTEPPSKEELMLLLEEVDVDGDGCISLQEFGAISSAFGPPACDSELRDAFDFFDADHDGKITADELFSVFRQIGDSRCTLEECRRMIRGVDKNGDGFVCFEDFCIMMEQQHRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="122093" PGL_stop="121742"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122093" e_stop="121742"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="122093" e_stop="121742" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122093" stop="121742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTACAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAAC</gDNA_template>
            <first_frame> N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  T  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  </first_frame>
            <second_frame>  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N </second_frame>
            <third_frame>   R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  Y  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="134146" PGL_stop="135108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134146" e_stop="134374"/>
            <exon e_start="134842" e_stop="135108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134146" e_stop="134374" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.977">
            <gDNA_intron_boundary i_start="134375" i_stop="134841" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134842" e_stop="135108" e_length="267"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134146" stop="134374"/>
              <exon start="134842" stop="135108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336267" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAG : AAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTC</gDNA_template>
            <first_frame> T  G  S  N  T  C  E  L  G  R  V  *  G  F  F  V  D  V  T  I  F  V  *  W  T  S  F  N  C  A  T  K  T  *  T  K  A  *  L  W  *  K  K  L  L  A  Y  T  L  H  I  S  R  *  S  C  T  *  Y  T  L  S  R  *  I  F  W  C  *  T  T  C  F  A  Y  S   : E  A  I  D  K  H  G  R  E  N  F  N  *  G  C  D  E  S  F  S  C  F  K  K  T  R  H  A  S  T  L  D  Y  L  F  S  F  G  C  K  I  R  P  S  T  *  N  P  S  K  T  P  S  H  R  R  C  R  E  N  R  G  N  S  P  K  N  F  I  S  A  K  I  L  D  L  S  P  S  P  A  R  P  K  F  D  L  G  A  </first_frame>
            <second_frame>  Q  V  V  I  P  V  N  S  V  G  Y  E  V  F  L  L  M  L  Q  F  L  Y  S  G  Q  V  S  I  V  P  Q  K  H  E  P  R  P  N  C  G  E  R  N  C  W  H  T  H  C  T  S  A  V  D  L  A  L  D  T  L  S  A  A  R  S  F  G  V  E  Q  L  A  L  L  T  Q  :  K  Q  L  T  S  M  V  E  K  T  S  I  E  D  V  M  K  V  L  V  A  S  R  K  Q  D  M  P  Q  L  W  T  T  C  S  H  L  V  A  K  S  G  L  P  P  E  I  L  A  K  H  L  P  I  D  V  V  A  K  I  E  E  I  R  L  K  T  S  L  A  R  R  S  L  I  S  H  H  H  Q  H  D  L  S  S  T  S  E  L </second_frame>
            <third_frame>   R  *  *  Y  L  *  T  R  *  G  M  R  F  F  C  *  C  Y  N  F  C  I  V  D  K  F  Q  L  C  H  K  N  M  N  Q  G  L  I  V  V  K  E  T  V  G  I  H  I  A  H  Q  P  L  I  L  H  L  I  H  S  Q  P  L  D  L  L  V  L  N  N  L  L  C  L  L  R :   S  N  *  Q  A  W  *  R  K  L  Q  L  R  M  *  *  K  F  *  L  L  Q  E  N  K  T  C  L  N  F  G  L  L  V  L  I  W  L  Q  N  Q  A  F  H  L  K  S  *  Q  N  T  F  P  S  T  L  S  R  K  S  R  K  F  A  *  K  L  H  *  R  E  D  P  *  S  L  T  I  T  S  T  T  *  V  R  P  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134147" stop="134374"/>
                    <exon start="134842" stop="135108"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERNCWHTHCTSAVDLALDTLSAARSFGVEQLALLTQKQLTSMVEKTSIEDVMKVLVASRKQDMPQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEEIRLKTSLARRSLISHHHQHDLSSTSEL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="135965" PGL_stop="135143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135965" e_stop="135143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="135965" e_stop="135143" e_length="823"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135965" stop="135520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135522" stop="135143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGACCATCATATATAATATTTTAATTTCCCATTCCCAATTTTGTTTCATAATGATAATAGACAATTTTGTGATCTATCTAGTAAAAGAGAAATTAATTAGATAGATAAGCAAGAGAAAGAAAATACTCATCATGAATATGGACGATACATCGACGATGGGTCAAATTCACCATGCCTATTTTGTTTATTGTGACTATTATCATGATCATCCTGGTTCGTCATTCTGTTGCACCCTATTTGTTGTGCAATCGAAGTACCAGCGCCTAGATTCAAATACACCATTCTCGAGTCTAGATTGAGGTTATTACCTCCCACATTGGTCGTGTTGCTCGTGCTAGAACCATGATCTTCGTTGTTTATAGGTTGGAATATCGCGGTGGAAGATGGGACGTTGTTTGTAGTTTCTTCCTCTCGTGAAATTACCATAGCCGCGGATTGAACTAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTA</gDNA_template>
            <first_frame> L  D  H  H  I  *  Y  F  N  F  P  F  P  I  L  F  H  N  D  N  R  Q  F  C  D  L  S  S  K  R  E  I  N  *  I  D  K  Q  E  K  E  N  T  H  H  E  Y  G  R  Y  I  D  D  G  S  N  S  P  C  L  F  C  L  L  *  L  L  S  *  S  S  W  F  V  I  L  L  H  P  I  C  C  A  I  E  V  P  A  P  R  F  K  Y  T  I  L  E  S  R  L  R  L  L  P  P  T  L  V  V  L  L  V  L  E  P  *  S  S  L  F  I  G  W  N  I  A  V  E  D  G  T  L  F  V  V  S  S  S  R  E  I  T  I  A  A  D  *  T  N  S  R  H  R  R  S  L  F  G  S  I  *  V  R  P  G  I  A  P  L  N  K  K  S  E  V  R  V  C  R  M  S  S  G  V  I  P  S  I  V  L  T  F  G  S  A  W  W  S  S  R  T  A  T  M  S  G  D  T  I  S  D  A  M  W  R  G  V  L  P  A  G  P  A  G  W  F  T  L  A  A  P  S  S  S  N  A  F  T  T  S  R  L  Q  F  S  T  A  *  C  N  A  I  D  S  S  R  F  S  P  S  P  M  T  I  S  L  T  N  S  T  S  D  E  S  </first_frame>
            <second_frame>  L  T  I  I  Y  N  I  L  I  S  H  S  Q  F  C  F  I  M  I  I  D  N  F  V  I  Y  L  V  K  E  K  L  I  R  *  I  S  K  R  K  K  I  L  I  M  N  M  D  D  T  S  T  M  G  Q  I  H  H  A  Y  F  V  Y  C  D  Y  Y  H  D  H  P  G  S  S  F  C  C  T  L  F  V  V  Q  S  K  Y  Q  R  L  D  S  N  T  P  F  S  S  L  D  *  G  Y  Y  L  P  H  W  S  C  C  S  C  *  N  H  D  L  R  C  L  *  V  G  I  S  R  W  K  M  G  R  C  L  *  F  L  P  L  V  K  L  P  *  P  R  I  E  L  T  Q  D  I  D  V  V  C  L  V  R  Y  E  L  D  Q  G  S  H  L  *  I  R  N  R  K  L  G  F  V  E  C  R  V  E  *  S  H  P  S  F  *  H  L  D  L  R  G  G  L  V  G  L  P  P  C  R  V  T  P  F  P  M  Q  C  G  G  G  F  C  Q  L  D  R  P  G  G  S  R  W  L  H  R  A  R  V  T  L  S  Q  P  P  G  Y  N  S  R  P  R  S  V  T  R  S  I  H  R  D  L  V  L  L  P  *  P  *  V  *  P  I  P  R  R  M  S  L </second_frame>
            <third_frame>   *  P  S  Y  I  I  F  *  F  P  I  P  N  F  V  S  *  *  *  *  T  I  L  *  S  I  *  *  K  R  N  *  L  D  R  *  A  R  E  R  K  Y  S  S  *  I  W  T  I  H  R  R  W  V  K  F  T  M  P  I  L  F  I  V  T  I  I  M  I  I  L  V  R  H  S  V  A  P  Y  L  L  C  N  R  S  T  S  A  *  I  Q  I  H  H  S  R  V  *  I  E  V  I  T  S  H  I  G  R  V  A  R  A  R  T  M  I  F  V  V  Y  R  L  E  Y  R  G  G  R  W  D  V  V  C  S  F  F  L  S  *  N  Y  H  S  R  G  L  N  *  L  K  T  *  T  *  F  V  W  F  D  M  S  *  T  R  D  R  T  F  E  *  E  I  G  S  *  G  L  *  N  V  E  W  S  D  P  I  H  R  S  D  I  W  I  C  V  V  V  *  *  D  C  H  H  V  G  *  H  H  F  R  C  N  V  E  G  G  F  A  S  W  T  G  R  V  V  H  V  G  C  T  E  L  E  *  R  F  H  N  L  P  A  T  I  L  D  R  V  V  *  R  D  R  F  I  E  I  *  S  F  S  H  D  H  K  F  D  Q  F  H  V  G  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135482" stop="135222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRPGIAPLNKKSEVRVCRMSSGVIPSIVLTFGSAWWSSRTATMSGDTISDAMWRGVLPAGPAGWFTLAAPSSSNAFTTSRLQFSTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135394" stop="135179"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLDLRGGLVGLPPCRVTPFPMQCGGGFCQLDRPGGSRWLHRARVTLSQPPGYNSRPRSVTRSIHRDLVLLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135859" stop="135665"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISKRKKILIMNMDDTSTMGQIHHAYFVYCDYYHDHPGSSFCCTLFVVQSKYQRLDSNTPFSSLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 560 chains have been computed
$ 
$ memory statistics:
$ 1251176 bytes spliced alignments in total
$ 393 spliced alignments have been stored
$ 3183 bytes was the average size of a spliced alignment
$ 42048 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1681 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 623 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:20:40
-->
