<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:20:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568785" ref_strand="+" ref_description="SGN-U568785 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|19743740|gb|AAL92461.1| (e_value=6e-144) putative glucosyltransferase [Lycopersicon esculentum]; (*ATH) AT4G34131.1 (e_value=3e-50) | Symbol: None | UDP-glucoronosyl/UDP-glucosyl transferase family protein, contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase | chr4:16343061-16344822 REVERSE | Aliases: F28A23.2; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=5e-129) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; ">
      <seq>tccgaaaaaaaagctttgttcttccatggcgaaactcaccaatcatgaagttgccatagtaatgattccactaccagcacaaggccatttaaaccaactcctccacctctcccgcctcatctccgcctataacctcccactccacttcgccggagcagccgtacacctccgtcaagcaaaaaatcgtatccatggctggaacccagtctccacctccaccgtcaaattccacgaactcccaatcccaaattacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattacttcccttttacaagaactctccagaaattacagaagagtaattgttatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatttcagttttttcgatctactcttgggataaatccagtgtaacgccggagtttacagagtatagcagagtacaatttgagttcagagaaattgttaattctggtaatttatacaattcttgctatgaaattgaaggattgtatcttgattttgtagcaaaagagaaaagtgcgcgtaataaacaatgggctattggaccattaaaccctgtgaaacagtttgataaaaaaaattcattaatttcgcataaatgtatgaattggcttgatgaacaagaaccaaattctgtgatattcgtgtctttcgggacgacgactacgttttctgatgaacaaattaaggaattagcaattgggttggagaaaagtgaacagagatttatatgggtattgagggaagctgataaaggtgacatttttacaggggaaagtagagaagttgagttaccagaagggtatgaagagagagtggggaaaagaggggttatagtgagagattgggcaccacaattggagatattgggacacgagtcgacgggtggattcatgagccattgcgggtggaattcgtgtatggagagtatatcaatgggagtaccaatattagcttggccaatgcattcagatcaaccaagaaatgcagttttggtaactgaagtgttgaaaattggagtagagttgagggattgggcaaagagagatgagttggtgagttcagttgcagttgcagaatgtgttaagagattgatggattctgcagaaggagatgagatgagacagagggttatggagttgagtaaatcagtggtggatggtggtggcagtggcagagagatggcttctttcattgcccatattacgagataataaaagacgattttaactagattttattccttttaaacgattgtagtgagtttgttgtgccaacttgaagtggctattgatgggctacatttataaagaagttcaggtgggttactataattcgactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2342" stop="4407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2642" g_stop="4108" g_length="1467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1468" r_length="1468" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U568785" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1467</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2642" e_stop="4108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGAAAAAAAAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCA-GTGTGTTACTATAATTCGACTCA</genome_strand>
        <mrna_strand>TCCGAAAAAAAAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGGTGGGTTACTATAATTCGACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586639" ref_strand="+" ref_description="SGN-U586639 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|19743740|gb|AAL92461.1| (e_value=2e-28) putative glucosyltransferase [Lycopersicon esculentum]; (*SWP) sp|Q9ZSK5|ZOG_PHALU (e_value=4e-21) Zeatin O-glucosyltransferase OS=Phaseolus lunatus GN=ZOG1; ">
      <seq>tataacctcccactccacttagccggagcagccgtacacctacgcctagctacaaatcgtatacatggatggaacccagtcttcacctccaccgtcaaattccacgaactcccaatcccaaatgacgaaacccctcttcctaatccaaattccaccaccaaattcccttcccaattgatgccgtctttccacgccacgattcatcttcgtcacccgattactttccttttacaagaactctccagaaattacagaagagtcattggtatttacgattctttaatagcttgggttcttcaagatacaccttctataccaaacgttgagtgttacagctttcgtagcatctcagttttttcgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="2469" stop="3432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2769" g_stop="3132" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U586639" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2769" e_stop="3132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCT</genome_strand>
        <mrna_strand>TATAACCTCCCACTCCACTTAGCCGGAGCAGCCGTACACCTACGCCTAGCTACAAATCGTATACATGGATGGAACCCAGTCTTCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATGACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTTCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTCATTGGTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATCTCAGTTTTTTCGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573134" ref_strand="+" ref_description="SGN-U573134 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157346738|emb|CAO16807.1| (e_value=2e-23) unnamed; ">
      <seq>ctttcaggaaatttccatggcaggcagccaagcgagtttggtttccaaatacgaacaaacaccaacaagaaattacgcctaattacagtgctctctaaacgtatttggatttcttcagtttgttcttctcagtgtttcttttggtgagtttgattcagaaaactcgaaggttttttaaagaatagagaaggaaatagatatgggtatgctcagatagcagttttggtgaccaatttttcacgtctgtgaattttcaagtatcaaatggcgctgtgttctatttacaagtatggttcaaaagctcaagggttggcgtttcttgcatttgggtccatttcctttttggtatttgtttatgttgctattgtctccaagttgcttccgccattcgacaatccgatccttgcagccattcagaatgacagatactattgctttctggttccattaacgcttcccatccttgttgttgctatatatttccactggctcagcatgaagatctttaagcatgcatagctcagacgaggtatggagcttttgtgtaatctcacgaaggatcgtcatcaattggttaggtttctgattccaagttgtttacttgaaacatttgacatgagtagaatgagataagttttcgtagtaatgacaaacgaagatactttcactattaaagtgtagttatttcagccccttttgtgtttctgcatttcccggaacttcagaagttaagaggacaaaatcgcgagcttccttcaaataaataatttgcataaatcaatacttgcttctatccaagatttttgatgaaggaaccgcttatgaagaagacatttaggctactaaatcatcttaggacatttagacattttaagtttttttttttttatcctaattcaacagttcagttgtttgtaattggtatgaacacagaattttgaaattgacttgcttatatatattgaagtaattgtagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="4473" stop="7737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4773" g_stop="5014" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.741" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5366" g_stop="5548" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="425" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6890" g_stop="7437" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="977" r_length="552" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U573134" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>973</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U573134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4773" e_stop="5014"/>
          <exon e_start="5366" e_stop="5548"/>
          <exon e_start="6890" e_stop="7437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCAGGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACGGTTTGTGCTAAACCCTTTTCGATTTTCTTGCTCAATTTGCTTGTATCAGTGAAAATTTCCATGAAAGATTGGATCTTTTTGTTGCTTTGTCGATTATGAAATCACCCAAATTAGCAAAATCTATTTTTGCTGCTTTTTCTGATATGGGTTATGCTGAGACAGCAATATAGTGACTAAATTTTCACGGTTTGTGTTGAACCCTTTTCGATTTTGTTTCTCAATTTGCTTGTATCAGTGAAAATCTCATGAAAGATTGGATCTTTTGTTGCTTTTTTGATTATGAAATTACCCAAAATCAGCAGTCTCTTTTTCTGCAATTGTTTGATGTATTATTGTGCTTTCTTTTTCCAGTCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAGGTGACTTTCCCTTTGTTCAATTTTATCCAGTTTCTGTTATTTAGTCAAATTAGCTTATGCCTGGCTGTATTGATAGCTATTGGGAATTATTATAATGTAGTGCTTAGTGAAATGCAAACTGTTATTGAGCCTTATCCGGATTGTTTGTCGCTGTTTCACTTTAGAAACTGATTGTTTAGATAAAATTATCTCTAAATTTAGGGATTTGTAAGGAACTTGACACTGTGACATTGTTTTGTAGATCATAAACTGAGTTGAGGTATCGAGATTTTAGATAGTGTTTTGGGATAATAAATGGGTTTGTTCACTTACTATTTATGAATGTTCTTTTGCTGTCCACTGTGTTTGTTACTCTTGACAAATTGTATGATTGGCCTGTTGGTAATAGTTGTTCACAAATTGTATAGATCATAACTTACCGGTTTGGGATCATTTATGCTCTAACTGCAGGGATGTTGATCCCACTCCCATTTAAACTTATTTTACTAGGATCTCGTCTCCATGAAACTTGCATTCATATTTGTGACACTTCTGTCTGTTTAATAATTATCTCGTCTCCCCTTTTTGAAAAATAAAGAGATTTTATCTAGTTCATTGGAAAGGTACTTTTTGGGATTCTGCTTTTAATCATCATGGATATAGAAAGAAGATTACTTAGAAGCCGATGCTGCTGGTCGAAATGTATTATGCTTTCCATACGACCTATAGCTCTTCAGTAAGTTACAACTCGAACATCTAACTGCTTGTGGTTTCAATAAAAAAGTTAATATGCTTAAGAGGTTTACAACTACATGGGTCTCTTCCAACCAGTTAACTGAAAGATCAATTTTGAATAGAAACACTTCCATTTTCTTACTTATTCATCACTCACATTGAGCCGAAGCATTGATTTGGTAGTACCAGACCAGTACTTCTCAATTCTGGATGCTTACATTCATTGTTAATGCATTAGCCAGCTTGCAGCATAATATTACGTACTGGTATGATGATTTGGTAAAAGTTGATTCGATTATGTTATCTTAATACTTTAGTTATACAAGAGTCTTCATTAACTGAATTCGACTTCGTCAATAAAAAGCGGTTATGGCATGAGTGGAATTGTTATTTGGAAAGGAGGATTCTATGAGATATCTTTCTGATTTTGTGATGGTTGTTAGTCTAATATAATCACCGTGCTATAATCAAAATCTTACTAAATGCTTGATGGGTTTTGTAGCTGGACTATCTCATGTTCAATAGTTTACGAATATTCTTCTTCCCCTTATCCCAAATTATCACGTTTGTGTTGGTATAAATAGCGCTTTTAGCCTGTGTTTGAGTTATTTTGTATTTCTGTTTCAGATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTAGGCTACTAAATCATCTTAGGACATTTAGACATTTTAAG----TTTTTTTTTATCCTAATTCAACAGTTCAGTTGTTTGTAATTGGTATGAACACAGAATTTTGAAATTGACTTGCTTATATATATTGAAGTAATTGTAGG</genome_strand>
        <mrna_strand>CTTTCAGGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACG...............................................................................................................................................................................................................................................................................................................................................................TCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTAGGCTACTAAATCATCTTAGGACATTTAGACATTTTAAGTTTTTTTTTTTTTATCCTAATTCAACAGTTCAGTTGTTTGTAATTGGTATGAACACAGAATTTTGAAATTGACTTGCTTATATATATTGAAGTAATTGTAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581747" ref_strand="+" ref_description="SGN-U581747 Tomato 200607#2 [27 ESTs aligned] (*GB) gi|147819472|emb|CAN61104.1| (e_value=2e-124) hypothetical; (*ATH) AT5G04160.1 (e_value=1e-126)  Symbol: None | phosphate translocator-related, low similarity to SP:P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor (Mesembryan... ; (*SWP) sp|P0C6B1|S35E1_RAT (e_value=2e-11) Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1; ">
      <seq>aacatttgggtcttgtggggaagaaaaaggaagaagagaggcacacaaataacacaattgcttctctttcttccactttcatacattccccacaaaaaagttcccaaaaacacacacacacactgaaaatcaatttttttttcaagaaataaatcttgaaaatctgttgagtaaagggtggattgatcaatttctgagttttttcttgtagtttcaacaaaagggtaccttaaaaatcgaatctttttgccatttttgacaaaatcaagaatcaaaaaaaaaaaatgttgtctggacaattagaaaagaagggttttttcatagctacacttataacattttggtattcctcaaatattggagttcttcttttgaacaaattattgctgtcaaattatggatttagattcccaatttttcttacaatgtgtcatatgacagcttgtgctgttcttagctatgtttctattgttttcttaaagattgcaccttttcagaggattaaatcaaggtctcaatttttaagaatttctacacttagtgttgtcttttgtgggtctgttgttggtgggaacatttctttaaggtacttgcctgtgtcgtttaatcaggctgtgggtgcaacaacaccctttttttactgcattgtttgcttatttgatgacaaggaagcaagaagcttgggctacttatggttgccttgttcctgttgttactggggttgttattgcaagtgggggtgagccaagcttccacctttatggatttatcatgtgtattggtgcaactgctgctagagcctttaagtctgttcttcaaggagttcttctttcttctgaaggggaaaagctgaactccatgaatctcctgctctacatgtcaccaattgctgtcgcagtattattgcctgctgcactcattatggagcccaatgttatcgatgtcactgcaacactcgcgactgaacacagataccttggcctgcttattgtggttaattccgcaatggcctatggtgccaatttattgaactttttggtgactaagcataccagtgcattgacactccaggtcctaggcaatgcaaaaggtgcagttgctgttgttatctccatacttattttccaaaatccagtaacattcatcggaatcgcgggctacacaatgactgtgatgggagttgttgcttatggagaatccaaaagaaggcacaaataagttttgacatcaatcgaaaccccttttttcttgttttcataaagtaccagacacttgtgtttcttcaaaaggtgttagctgtgttgtggtagagttaggaagaaatagattccattgcaattctgtagcccatagacagatgaaatggttaaaaggggttgatttcttttaccattcttctgttgtgttctttctattaagaggggatctttacatttgtaactattttttttgtgtgttgttacaataaagtcaaataatgtcttcttccttcaaatggtccttatattatatgtttacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="13397" stop="7982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13097" g_stop="12367" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12366" i_stop="10159" i_length="2208">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10158" g_stop="10055" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="842" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10054" i_stop="9808" i_length="247">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9807" g_stop="9579" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="843" r_stop="1071" r_length="229" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8732" g_stop="8282" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1072" r_stop="1522" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U581747" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>1515</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13097" e_stop="12367"/>
          <exon e_start="10158" e_stop="10055"/>
          <exon e_start="9807" e_stop="9579"/>
          <exon e_start="8732" e_stop="8282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCC--AAACACACACACACACTGAAAATCAA-ATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATC---AAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCC-TTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATCGCAAGTGGGGTATGTTTGCAAACTTTCTAACTTGTTCTTTTTCTTAAATGAATAGTTAATTGCTTGTTTTTTTTGGTTTCCGTGTATTCGTATTCATTTTGGAGCTCGACTAATTTGGATTCAATTTTACTTTGGGATAAAACGCTCTAGAGTTTGAAATTGAGACCTTTGGTTAAAAATAAAGAAGTACTTATAGCTCCACTACAACCTTTGTGGTGAATAGTTAATTGTTTTTTTGGTTTCCGTGTTCTCGACCCATTCTCTAGGGAATAAACGTTCGTAAGGCTTGAACACAAGATCTTTGGTTAAAGATGGAGGAATACTTTTTAGGCTACCTTTGGTGGTGAATAGTTAATTGCTTGTTTTCTCTTTTTTTTTTTGGTTTTGTCTTGTCCCATTTTGGGGTTCGACCAATCTAGATTTAGGAGGTTCCACTTTGAGGATAAAACATGCCTAGGGGTTGAACCCGAGCTCGTTGGTTAAAGATGGAGGAATACTTACAACTTCACCAAGACCTTTGGTAATGAAAAGTAAATTGCTTTTATTTTGTTTTCGTATTTTGTACTCATTATGGGCTCGACTCTAGATTTAGGAGGTCCCACTTTGGGGATAAAACATACATAGGGCTCGAATCAAAGACCTTTGGTTAAAAATGATGCAGTACTTGCAACTCACCATGACTTTTGGTGGTGAACATTTAATTGCTTGTCTTTTTTTTTGGGTTTCCGTGTTTTATACCCTATTTTGGCGCTTGACTATTTTGGATTCAGGAGGTCACTTTGGAGGCAATATGCACCTAGGATTCGAACCTGAGACTTATGGTTAAAGATGGAGGAGCACTTATAGCTCCACCGTGGCCTTTATTGTTGAATATTTAATTGCTTGTTACTTGGTATTATATTTAGTTGATCAGGTTGTAGTATGTTTCGTGTAGAAAAATTGGATCTTTTTCTCTTAAAATTTCTATCCTTTTTTGGGCTGTTTAATTTCATTCCTATTAAAGTTGATGTATGATTTTTTTAACAATGGCAGTAGTTCTTTTAGAAGTCTAGATTAACTGATTGAGATCAGATATGAGAATTTTTATGGATGCTCATATCGATACATTATAACGCCTCGACAATTTGTTGTCAGGCAGATCTAGAATTTAAATTTAATGTGTTCAACACATCATAAGTTTTTATCAAGCCCATTATTCATTCAACTTCGAATCTTTCTAGTAATCTTCCACCTGTATATTGATGCCCCTGTCAAAAATACTTTCCTTTGTGAACAATTCTTACCATTTCTGTGTTTTGCAGTAGTTTGCTTTTCTTTTCGATGGAAATTATGTTACTTTCACATTCTATTTCAATTTTCATAAAGAGCACTGGCTTTTTTAAAATGATAGTGTCTTCCTTGACGACGTTTCCATTGGAGATATTCATTAAAGTGAAGTTTGCTCGGTAGAATGTGTTTTTTTCTTATGATAATCATGATGTCCGAGACCCTTCGGAGTGGCCTAGTGGTTTAGGCTTGGACTTTCATGTTGGAGGTCTCAAGTTCGAAATCCCTTGCTAGCGGAAGCAAGGGATTTGTCTTATGAGTCGAGAGTTCATCGCACCAGATTTGCCTAGTGATGGTTACCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAAGGGGCTTTACCATGTGCGCACCCAAAGGGTAGCGGCTACGGATTTCCCTTGTCATCCAAAAAAAAGTAAACAATCGTGATGTCCGAGCTAGCTTTAGGGTAACTCTGTCTAGCAAAACTTGAAAATATAGGGATAGATCACCTTGTATCTTTGCCTCTCAAGTCTCAATTGAGTGTGTTTTGATGACATATATACAGAATCAAACACTAGATGATAAATATACTTCAAGCAATTCAGAGATTCTCAATGTCTCATGGTATTAATTTAAGATTTTATTCAGTAAGAAATTGATAGTTAAATTACTTACCTTTGTCTTTTGTTGTGTTATATTTGAAGTTTATTAAGCCATGACAAGTATCCATCTATTGGTTGTTGAAATAGGTTTTGTTTTCTTGTTGAAAATTTTGTAGTAACTTTTATTAAGTATTAATCTACCTCCTAAGGTAGCGGTAAGGTTTGCACACACGCTACCCTCCCCAAATTCCACGTGTGGGATTATCCCGGGTATGTTGTTATTGTTGTTTATTGACTATTAAGTTTCTTGATTTGATGATAGGGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTCAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGGGTAAGTACTTTGCGTCTTCTAGCCATCTGTGTGAACGCAAAATACTTTTACCATCACATCATCTAAAAGATAACTAACTACAGGTTACGAGTTTCTGATCTTCTAGGTTCCTCGTTTGATTTACATCTGATAGAGATTGGGGTTCCTTTCAAATTCATGACCCTTCATTCGATTTATTTGTCGTTCGTTTGTTTTGCTGTTACATTTTAACTAGTAGTTTTCTCCTTAACTTGATGTTATCTTTCAGGGAGAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGTAGTGTTATTGCCTGCTGCACTCGTTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAGGTTTGCTCCTCTCCTACCCCTCTTTTTTCCCCTTTAAGTGTAGTGTTATGTGGCAAAAGAAAGATGAAAGCAGAATGATAACCGATGGATGTGGTGGAGTGGTTGGAAATATATTATCCTTAATCAAAAGTCTCGAGTTCAAGTCTGAACCTAGGAATAAAGAACCTTATCGTAGATAGCATTGGCCACTATAGACCACTCCTGGATTAGCATATGTTTTTGTTCTCTTAACTCGACATATTTCTTTAGACTTAAACACGAATGATCACGCCTAGTCTCTGGCCAAGAAAGATTATTTTTTTAAATACATTGTTTGAACACGACTTCCAAATACCCTTTAAACTTCAACCAAATACTATATTGCTCCGACTCTTCAAAAATGCAACCAAGTGTGTATCAAATCCTCCAAAAGTAATGCATCTTTAGAAGATCTGTCAAGATGCAACAACATTCTTTGGTGAGTCTGTGAAACATCAACCAAATACTGTCTAAACACCTACTATTGCCCTTTAGGGTGGCCCAGTGGTTTGGGCTTGGGACTTTCATGTTGGAGGTCTCAAGTTCAAAAGCAAGGGTTTGTCTTCTGGGTCGAGCTCCTCGCACCAGATTTGTCTAGTGCAGGTTACATCTATATGTGGTTTGCGAGTTATTGCATAAGAGCGGGGATTTTATCGTGTATGCACCCAAGTATAGCGGTTTCGAGTTTCCCTTGTCATCCCCCCTGCCAAAAAAAAAAAAACACCTACTATATTTTTCAAGAATGGTTACTAAATTCTCATAGTAGCTGCAAATGTAACATATTTTTCACTTGTTTGAAATAACTTAACTCTCTATGGACTGGTGCAGGTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTT</genome_strand>
        <mrna_strand>AACATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTTCATACATTCCCCACAAAAAAGTTCCCAAAAACACACACACACACTGAAAATCAATTTTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGTAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGACAAAATCAAGAATCAAAAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTGAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACACTTAGTGTTGTCTTTTGTGGGTCTGTTGTTGGTGGGAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATTGCAAGTGGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTTAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGG.......................................................................................................................................................................................................................................................GGAAAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGCAGTATTATTGCCTGCTGCACTCATTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583872" ref_strand="+" ref_description="SGN-U583872 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tagtgtggtgattcacatattttctgtggtgaacttccatgttattgaactgaatgtttgttggatcatgcaattataaaatttggagatagtaattttttttaatggagaaaggattagtggtgtatgattcgaattttgatggataatggattgttatatatttatttgtttaaatgtcatattaatttgtttgtatgatgtgcatctaacttacatgtcatgttattttacgtttttactgtcgaaggcaatataggagataaatttatcaatagagagttttgataataccttggtattcaaacattataatttgttagtaatttatgaattttgttttcttatttttttccatttgtagaagtttgctcatatcaattgaaatgtttgagcttatgatatttatagtatatggtaaaaagaatacatcaattatccttttttttatgagttctgtcccataattatgtatttgtttcatttatctatctaattattatattttttgtgagtttatattttgactatttattgttttatttacgtacttaagctagcactctctttgttagacatatctcgatgacgacttggccaatatatatggttgttataaattgagaagaatatttgatcaactcaccatcaagatattatgatttaataccgangaagtaatgatttaaatagatataagaaataatgaatagttaaagtatgaaattcgtgaaaaaaaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="12994" stop="14337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13294" g_stop="14037" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U583872" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13294" e_stop="14037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGAGGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTGAAAAAAAAATAA</genome_strand>
        <mrna_strand>TAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGANGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTG-AAAAAAAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604673" ref_strand="-" ref_description="SGN-U604673 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>caggagatcatctatcatgggatattagaggggaataatatccttaagggtacattgtgcattcagaaaatgtagttttgagcattgatgatgataatgaagttgagctacaaaatgcagtgaaaaatgcatcaggcaatctgtttcgatttgatgcacatgtaaccgagtacaccagctatgtcgatattgccactatgtcctgttctgcagggagctgagagtgaatggatctagcttggacgagctccgactttgttttcctgtactaaagaaactggtaaaacattcctaaacatatttcatataataagctgcaataaaaagaatagacaattgctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="24699" stop="22314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24402" g_stop="24338" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24337" i_stop="22893" i_length="1445">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22892" g_stop="22614" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="344" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U604673" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U604673" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24402" e_stop="24338"/>
          <exon e_start="22892" e_stop="22614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCAGTAAGTCTGTTGATCTTCTTCTTGTTTTATTTCTTACCGATTCTGATATATTTTTGCAGGTTTTAGTTTTGTGAATTAATTTATGTTTTTCTATTATTCACTATTTTGATTAAAACTTTGATAATTTCGTAGATCAAAAACACTGATTTTAAACACAAATCGGCTAAGAAATGTAATTGATAGAGTACTCTTGTTATCGAGGAGGCGAAAAATTGATTAAGTTAATGAAAATATTTCGTCAAATTAGCCTTTTATGAGTTTAATATTGTTTTACACCTAACTACTTTTTAGTTTTTAGAAGTTTCAATCATGCTACTCTAAACTTAAGCATGTGATCGAATTTCATATCATCCCAAAAATCAAGTGATTTGATATATGAGAATTACTTACCATTATTAATTTGATTTTTTGATGGGATATCAATTAGCTCTCATTAGTGATATTATCAAATTACTGTCGATTTTGACTAGAATAGAAAGGAAGAATTACCTAGTATTTATTCGTCTCTCGACTATTATACTGCCTAACTTGACTTGATTGCTATTCTTATGGAAATTTTTGATTGAGTGAAATTTGTTGCTTGATTTGTTTTTGATCTTGTGAATATTCAATATTATTAATAACTTGATATGAACATGCATCTATCTTGATATAAAAAGGTAAGTAGGAATAAATTTTGGGCAAGATACATTATATATATATTTTTTATCTATTTACAAATAATTCCTCTATATAAAGCTCCACTTGATACATGTATATTACCAAATTTTCATCTTTATTATGGAAAAAAAAACATAAATGATTACAAAAAGGACCTTGAGATTATTGAAGAGGTGACTAGCAATGTTGATGAGGTCAAAAAAAGAGTTCTTGCTGACATCCTCTCACAAAATGCTCATGTTGAGTATTTGCAGGTAGATTAGGACGTTAAATAGGCGGATTGAGTTGAATTTGAACAGATTAAAATACGTTAAGTTAATAATAGGCTAACTCCTTTCATACTAGTAGTCATAGTATTGTTCATGTCATTTCGTGTTATTCGCGGATTGAGTTGAATTTAAACAGATTAAAATAAGTTAAGTTGATAAATGAGCGGCATCAGCAATCAGGCTAAAAACTTTTATATTAGTAGCTGTAGTGTTACTCATGTCGTTTCTTCTATTACTAGTTAATGTTTCTTGTAGTAATTGATTATCGTATTATTTTTGTTGTAGTTACTGTTCAATTTTTTTTCTTTTTATATGCTCTGTCATGATTTCTTTAGTATTTAATCTTGGCATCTTTGTTCCTATTATTTTTATTTTTTGATTCTCTTGGTAATGCTTTTACTTGAACTGGCAAGGTTCGTTTTTTTGGTGTTCGAGTCAGTTTATATAGTCATTATTTTTATTGTTTTTTATTCTGTTCTTTTGTATATTGCGCCTCAATTCAACTTCCTATGCCAGGAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</genome_strand>
        <mrna_strand>CAGGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572289" ref_strand="+" ref_description="SGN-U572289 Tomato 200607#2 [22 ESTs aligned] (*GB) gi|195609464|gb|ACG26562.1| (e_value=1e-91) grancalcin; (*ATH) AT3G10300.3 (e_value=4e-87)  Symbol: None | calcium-binding EF hand family protein, low similarity to SP:P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr3:3186326-318... ; (*SWP) sp|Q8W4L0|CML49_ARATH (e_value=3e-86) Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49; ">
      <seq>gggggaattgacagaaatttatctttttaattttctctctctagcttttcaaaaatgtccggttacccgcacaatgttcccggctacggttacggccagccaccgtcatctcagccgtactcctccaccccatacggtgctccaccgccgtcttcagcttcaccttacggtgctccaccaccgtcttcagcatcaccctacggtgcttcaccatcaccttacggtgctccaccatcaccctacggtgctccacctcctcaatctcactccccttacgctcccgttccgtctccctacggcgccggagcaccgtcttacggtgatccgcataaacccccaaaagagaataaaccacagtcttcatccccttacggtggggcaggggctgggtaccctgctccacctccttcggctccgtacggtgatccgaacaaaccaccgaaggatagccactcacaaccgtctgctccttatggtggataccacgcgccacctcctgctgggccttatggagctagtagcccttttgcatctcttgtgccgtctgcttttccaccgggtaccgatccgaatattgtagcttgtttccagctcgcggatcaggatgggagtgggttaattgatgataaggagctgcagaaggcgctttcttcgtataatcagagcttcagcttgaggactgttcatctgcttatgtatctcttcaccaataccaacactagaaaaatcggtcccaaagaattcacttcagtgttctacagtctccaagaatggaggggaattttcgagagatttgatagggataggagtggaaaaattgattcatctgaattgagggacgcgttacttagcctgggatatgctgtatcaccttctatcctggaattgctggtctccaagtttgataaaactggtggaaagagtagagccattgaatatgataacttcattgagtgctgcctcaccgttaaagggctaactgagaagttcaaggagaaggatacttcatattctggctctgctacgttcacttatgagtcgttcatgctaacagttttgcctttcctgattgcttagagacgaggcatatgaatttcacaattacgggtggtcttactatgatttaccagcttcgttttcgtttgttttcagtagagagatgtttgcttctgttagtttttgtaaacagtttccagggtgaagttgaattacttgcttgtagaagtctagtgtgttgtagagcagttaatgggctatcaaaactaaatcctttgtgtttcttttgatgtgtttactattcgatcatgactactttaaagagtatttggttcggcttattttagaaaataaaatataaacaaatctatttcaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="25019" stop="28630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25314" g_stop="26043" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="730" r_length="730" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27367" g_stop="27413" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="731" r_stop="777" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27529" g_stop="27704" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="778" r_stop="953" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27811" g_stop="27829" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="972" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99">
            <donor d_prob="0.959" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27929" g_stop="28330" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="973" r_stop="1374" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U572289" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U572289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25314" e_stop="26043"/>
          <exon e_start="27367" e_stop="27413"/>
          <exon e_start="27529" e_stop="27704"/>
          <exon e_start="27811" e_stop="27829"/>
          <exon e_start="27929" e_stop="28330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAATTTACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCGGTAATAATCTTAATTCCAAATAATTGAGCTCAAAATTCACTTATGAAATGTTTCAGTGTTTGCCATGTATTGTAGAAAATGATCAGATCGATGATGAATTTCGTGCTGAAAATGTTAGGTTGTGTACAATTATTAATAACAACATGCAGTATACAGTTGATTTGTGACTGAGGGTGGTTGAAAAAGGTCATTTGGAGTAATCTTTCGTAATAAAGAAGTAATCTTGATCAAGACTTTAGGGGTTGCTTGGTATGAGGGACGAAGGGTAACAGTTATGTGATTATTTTATCATGCATTTGCTTAGGAGTATTAGTCAGTCCCACAGATAAATATATGGTCGGATAACTAATCCAGTGGGATATCCGAGGCATACCTTATACCAAACAACCCCTTATGGTTGTATTGGTGGGTCATCCTTAAGTGTATGTTGGCCAGGATGATATGACTTAAACAGGCCTATAAGACTTTGATATGGCCATTGAAATTCCTGTATGAATTGTTCTTTATGTCCTCGTCCAGGATTAGGTGGAAGTTATTGAGTTTGTTGTTCCTTGAGTTGATGACTGTGTGGCCATTTTATGTATTCTGAATTGGCGATGTAATGAATCAACGTCATCAGGGAAGAAAGGTGTGAAAAGACCCTGTTGGTCCATCAATGGGGGAATGTAGGGTGGGATTTCCATATAAAAAGAGAAATAACATTTTCTTAGCATGGAGATCTTACATAATGCAGATTGGACGTTCCTACTACTTATGGAAGTGGTGTTCTCAATTGAGCAATATCTAGCTTAATTTAACACTGTCTTGCACTATTAGTTCTCTTTGGAAGGAACAGAAGCAAGTCTTTGACAATGTGGTGATAGCGGCCGAACTTCCGTTTAGACTTCTCTCTTTTTTCCCCTCTCTTCCTTTCTCCTTCCTTTTTTGAAGTTAGAATCTCTTTAGACCATGTGTTGAGCCATTAGGGTGGCAAAACAACTACCTACATAAGATGCAACTTTGTATATTGATAATTCTACGCAGAAACTTTAGTTTTAGCATCTAGTAGTAAATGATTGTGTGCTAACATGTTCGCCAGACTTCCTTTTTGCTCTATGTTTTTTCAAGTGGAAAGATGAATGCAGAACTATTCCCTTTTTGTTCTATATATTTTTCATTCCAAATGTTATTGGTTTTTGAAGTTGATCAAGAGTATGGTTTAATGATGTTGATCGAATTTGAGTTGGAGATATACCTTAACGAAGCTTTGTTCTTTCAATGAGCCTATAGATCTTTCCCTCTTTCTTTTTCTGCCTGTTGATCTATTTTCTGCCCTGTAAGCAGGTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGGGTAAGTTAAAGAATCTTTTACGGTTAGCTTTGCACTTCTTTGTGTTTTCCGTTTTGCTTGGGAAAACAAATCTCCCTTTCTATGGAAGTTGATTGGAACTTCCTGTGTAATGCAGGGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGAGTATGTTTCTGCATCAATGCAAATCTTTCTTCGTATATATCTTCTATTTTGTTCTATGCTTTGCTAACTTTGCCTTTTGTTCTTCCGTTTTATTTGCTTGATTCAGGTGCTGCCTCACCGTTAAAGTAAGCTTACAGTAACTTCGTATATTCTGGCATTCGTGTACCATTCCATTTTATCCAGCTAGGTGTTTTTTCTCACATACGCTCTCATTTCTTTTGCAGGGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</genome_strand>
        <mrna_strand>GGGGGAATTGACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG...................................................................................................................GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA..........................................................................................................GTGCTGCCTCACCGTTAAA...................................................................................................GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585102" ref_strand="+" ref_description="SGN-U585102 Tomato 200607#2 [35 ESTs aligned] (*GB) gi|118488342|gb|ABK95989.1| (e_value=0) unknown; (*ATH) AT3G57290.1 (e_value=0) | Symbol: None | eukaryotic translation initiation factor 3E / eIF3e (TIF3E1), identical to eukaryotic initiation factor 3E subunit (Arabidopsis thaliana) gi:12407658:gb:AAG53613 | chr3:21207533-21210127 REVERSE | Aliases: F28O9.140; (*SWP) sp|P60228|EIF3E_HUMAN (e_value=5e-117) Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E; ">
      <seq>gttatttattccttacagcaaaaaagacgaaaccctagaaatctttcttctaccgatccacttctcatcttttcagtttctctggttctgcacggcggcgagttttgtggttgctatctcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattggagtctattcatcttcttcaaccatgacaatggcaggacactgatcattgacctgtttaaccaggacaaatacttgaatgccattcaaacaagtgctccccacttgctgcggtacttggctattgcatttattgtcaacaaaagaagaagacctcaatttaaggactttataaaggttattcagcaggagcaacactcttgtaaagatcccatcacagagtttttggcatgtatttacgtcgactatgattttgatggggcacaggagaagatgaaggagtgcgaagagctaatattgaatgacccattccttggaaaaagagctgaagagggcagtttctcctctgtgccattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagcttgatgccaagatagacactgaaaccgggacagttacaatggaaccaaatcagcctaatgtgtacgagcagctcatcgatcacaccaagcccctttctggacgcacgtacaaattagtcagtcagcttcttgaacatgcacaaacacaacttgctagatagtttggttgaggacattaagctcgtgccaattttgcattgctcccgtacctgattaacacctttatattcaagaatgttgcttatgttaattcctggatttcccttggaggaaattttgagatacatgatgaattatacattagtttcttttttatcttgtgttgtctccattggaagtggtatgcctttgcattttagtactcgtttttgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29082" stop="33755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29381" g_stop="29729" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="504" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="732" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31588" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="854" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32047" g_stop="32266" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="1074" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.819" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32585" g_stop="32727" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1217" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32910" g_stop="33047" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1355" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="33141" g_stop="33455" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="1356" r_stop="1670" r_length="315" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U585102" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U585102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29381" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31588"/>
          <exon e_start="32047" e_stop="32266"/>
          <exon e_start="32585" e_stop="32727"/>
          <exon e_start="32910" e_stop="33047"/>
          <exon e_start="33141" e_stop="33455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGTGTAAGTTTATATACAGATGTACCTTATCGAAATGTTCAATGCGTTGACCCATTTTAGCATACACCTGATGTTTATGAGCATTGTCATGTTCAGGTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATG</genome_strand>
        <mrna_strand>GTTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG..............................................................................................................................................................................................................................................................................................................................CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT.............................................................................................GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595658" ref_strand="+" ref_description="SGN-U595658 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|118488342|gb|ABK95989.1| (e_value=3e-104) unknown; (*ATH) AT3G57290.1 (e_value=3e-102) | Symbol: None | eukaryotic translation initiation factor 3E / eIF3e (TIF3E1), identical to eukaryotic initiation factor 3E subunit (Arabidopsis thaliana) gi:12407658:gb:AAG53613 | chr3:21207533-21210127 REVERSE | Aliases: F28O9.140; (*SWP) sp|P60228|EIF3E_HUMAN (e_value=9e-56) Eukaryotic translation initiation factor 3 subunit E OS=Homo sapiens GN=EIF3E; ">
      <seq>gcttaccgacagtagcaatcatggcgtcgaagtacgatttgacgccacgtgtagcgcagcaattggacattcacttgattttcccgttactggagtttttgcaagagcagggattatacccagatgaatatatactcaaggcgaagattgagctgcttaatcacactaacatggttgattatgctatggatattcataagtctctctatcatactgacgatgtgcctcaagaaatgatggagaggagagccgaggttgtggcaaggttgaaagcacttgaggaagctgcagccccattgatcacttttttgcagaattccagtgctgtgcaggagttgagagctgacaaacagcacaatcttcagttgctccaggagcggtaccagattggtccggaccagatagaggcattgtatcaatatgccaaatttcagtttgaatgtggaaactattctggtgctgctgattatctttaccagtaccgagcattgtgcacaaacagtgacaggagcgtcagtgcattgtggggaaagcttgcagcggagatactaatgcagaattgggatattgcactcgaggaactcaaccgcttgaaagaaattatcgactcaaagagtttctctactccgttgaatcaagttcagaatagaatatggctaatgcattgagagatgaattccttgaaaatgctcgtctttttatctctgagacctactgccgcattcaccaacgcattgacatgggggttctagctgagaagcttaacttgaaccttgaggaggcagagcgatggatggtgaatcttatcaggacctcaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="29200" stop="33286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29499" g_stop="29729" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30782" g_stop="30936" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="386" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31108" g_stop="31335" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="614" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.526" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31467" g_stop="31515" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="663" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31516" i_stop="32646" i_length="1131">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32647" g_stop="32727" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="744" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32910" g_stop="32986" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="745" r_stop="821" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U595658" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29499" e_stop="29729"/>
          <exon e_start="30782" e_stop="30936"/>
          <exon e_start="31108" e_stop="31335"/>
          <exon e_start="31467" e_stop="31515"/>
          <exon e_start="32647" e_stop="32727"/>
          <exon e_start="32910" e_stop="32986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAGGTATCATTTAATTTTTTCGCTTCGTGTTTCCAATTGATTTTTTTGTTTATTAATCTTAATACTTGTGCTTTTTTTTTTTAGCAAAAGGGGTTTTTTTTTGGGGGGGTGGGGTTGTGAATTTTATGGATATTGTTTATACAAGTTGTCTATGTGCTGTTCCTCAAGGTTATCTCTTTCCCCCCTTTGTAGTAGTGAATACGCATTGATTTGTGTGTTGTGTGGGGTGGGGTTGTACGTCAAGGTTTCTCTTTCTTTCCCTTTGGTATGAATGCCCGTTGATTTGTGCCCTTACTGATCGAAATACCTTGTGCCCTTTTCAGCATGAAGGTTTTCGTGTGTGGTGTGGGGTTGTTAGTTTTAATGGATATGGTCTCTATAGAAGTTGTAGAAGTTGTCCTTCAGGTGTCTCCTGTTTCCCTTCATATTGGTGTATGTTTACATATTGGTCCACGTATTGGTGAATGCTTATTTATTTGTTGCTTCACTTAATGCTTTTGCACTTTTAACAAAAGGTGTTCTTTTTTGGGGTGGTGATATGGTGGTAGTTGTAATTTTGATGGTTCTGGTCTGTAGAAGTTGTTTAAAATTTATTCGAAGGGGATAATCTGTATAGTTGATGTATAAGAGTAAAAAAATCTGGTGACTTAGCAGTGCCCTTTTTAGCATAGAAGTTGTTTTCTTGTGGGGGTATTGTAATTCTGTTGGGGCAGTCTCCGTAGGTTTTCTTTGGAGTTGTCCCTTGAGGAATCTGTATAGTTGTGATCAGATAGAGATTTGATATGGGAGGCAATTTTGACGTTGTTGTCTGGATTTTCTGTTTGAGCTTTACAGTAAATGCATGCAATGTATGTAGATTAAAACCTTCTTGGTGTACTTAGATAAGATAAACTGTTGGTACACATACGTGTCGGTACAGAGTCTAACCATTTGCGACTTGCCCTCAGGGATTCCTCTGTTATTAAAAAAGTTTAGTTTGAGCAGAAGTGATTTTGGGAGTTCCTTTACATGTTTAAATTCTGCACTGTCTTTATAATTGCCGTTTGATTGTTCAGAAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAGGTGCATAGATCTAGTTTGATTTACATGATATAGAGTTCCTTCTTCTTTAGTACTTAATGTTGTATAATTAATAATATACTTGTTAAAGGGATCACAAACAGAAGTTGGTCTCTAGCTAATTTTGTGAATATACATTTTTTATTTTAGTAATGCTCTTACAAACCTGTCCAGATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAGGTAATATTTTGCATATATTGAGTCAACAATCTGTCTGTTTGAGTTAGTCTTACCAAGTTGAGTATCCTGTAGGAAAAAACTGAATGATCCTCAGTTTACCAAGTGTACTAAAAGTGTCGCTTGTCTTGCAGAGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAAGTATGCCAACTGTACTTTAGTTGCTATTGCTTATAGATGATTGTTTTCATTTGCTGCTTCATTTTAGATTTCCCCATCCTGTTTGAGCTAGGCATTTTTTCTGATACTATCACCTACCGAGTATGATGTAGAGAAATATTTTAGGAAGCTCCGATTACCTAGTTCTTTCCCTTAGTGGGAAAATGGAGAAAACTAGATGAATTAGAATGAAACATGATCTGGAGGGTCAGGAACACACTGTATTTCTTATTTGCATACAGCAGAATTATGTTTGAAATATAGTTTTCTTATTCCAAAATGTTTGAAATAAATATTGCTCTTCTTTTGTGGTAACATACATTAAGACAGTATTCTTCTTGATATGTCTCGATTAAAGTAGCTGTTATTTTTCCTTTTGTTGGTATTCTATGGATTTACATCTTCCCTTTGAGCTTTTCTAAATCATTGAAGTCTTGCAGATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAGGTAAGCTTTTGTGCGTAGCTTATCCGCTTTGATGCATGGTCACATCATAGTTGTATGATTCATTTCTTGCATATCAGAAGTAGAAACTGAACTTTTCTTTAAATAAGTTGTAATTGACTTTAAGATGATATGATATATGAAGTGAAGATTGTATTTTGGAAGTATAAGCGCAGGACTCTTTGCAAATATATGCAAGTTTTGTAGACTTTGGACATGCTAGTTTCTGATACTCGAAGCCAAGTATCTTTAGTATAGCCACTGAGCTCTTCCCGTCAGTGCAGCTCTTTTTACTCATTTTAACATGGAGGCTATATGCAGCTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGGGTATGTAGCTAATTCTTCAAAGTTACTTTCTAAATCTATTTTGGGGTTCCTTCCCACTCCCCTTGCCCATAGTTTTTTGTAATATTAGGTATACCCCTTTTGTTTGTTACCTGTTGAGAGGGCTTAAGAAAGCAGAGTTGTGCCCATTTAATAACCATTTTCTTTCATTTCATAAATGTCAGGGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGC</genome_strand>
        <mrna_strand>GCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG...........................................................................................................................................................................ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG...................................................................................................................................AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG......................................................................................................................................................................................GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577505" ref_strand="+" ref_description="SGN-U577505 Tomato 200607#2 [96 ESTs aligned] (*GB) gi|498926|emb|CAA52872.1| (e_value=1e-169) glucan endo-1,3-beta-D-glucosidase [Lycopersicon esculentum]; (*ATH) AT3G57270.1 (e_value=2e-94) | Symbol: None | glycosyl hydrolase family 17 protein, similar to beta-1,3-glucanase GI:16903144 from (Prunus persica) | chr3:21202216-21204168 REVERSE | Aliases: F28O9.120; (*SWP) sp|P36401|E13H_TOBAC (e_value=7e-145) Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum; ">
      <seq>atccactgctcaattttcttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgttaggaactatggtaatgttaagttcaggtatatagctgttggaaatgaagttagtccattaaatggcaacgcgcagtatgtgcctttcgtgatcaatgcaatgagaaacattcagaacgcgatttctggcgctggtctaggaaaccagatcaaagtttctactgctattgaaaccgaacttactacagatacttaccctccatcaagaggcaagtttaaagacaacgtccgagggtatgttgatcccatcattagattcttagtagctaaccgctcacctttacttgtcaacatatatccatactttgcaatagcaaacaatcaagctattaagcttgactacgcgttgtttacatcccctggagttgttgtgaatgataatggaagagaataccgcaacttatttgatgcactcttagatgctacatactcggcccttgaaaaagccggtggttcatctttggatatcgttgtatcagagagcggttggccttcagctggagcagggcaattgacctctattgacaacgcgaggacttacaacaacaacttgattagacatgtgaaaagagggagtccgaaaagaccatcaaagcctattgaggcttacattttcgcgttgtttgatgaaaatctcaagagccctgaaattgagaaacattttggactgtttacaccaaacaggcagccaaaatacccaatcagtttcaactagctagactatgctacggaataagagttgtcgatcttttcttcttataatatgtagttgaataattgaatcgttgctcaacttgaacagagagcaacccttcgcgtgatatgtactcatcctacatgcttatataatgtgattgaataacctaattagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50566" stop="52562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50866" g_stop="50983" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="52195" g_length="1089"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="1206" r_length="1088" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1229" polyA_stop="1261"/>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U577505" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1207</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50866" e_stop="50983"/>
          <exon e_start="51107" e_stop="52195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTGCTCAATTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</genome_strand>
        <mrna_strand>ATCCACTGCTCAATTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCGTTGTTTGATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTT-GTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATTGAATCGTTGCTCAACTTGAACAGAGAGCAACCCTTCGCGTGATATGTACTCATCCTACATGCTTATATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591333" ref_strand="+" ref_description="SGN-U591333 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|498926|emb|CAA52872.1| (e_value=6e-37) glucan endo-1,3-beta-D-glucosidase [Lycopersicon esculentum]; (*ATH) AT3G57240.1 (e_value=2e-19)  Symbol: None | similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:At3g57260.1); similar to beta-1,3-glucanase (GB:AAA32756.1); contains InterPro domain Glycoside hydrolase, family 17 (InterPro:IPR000490) | chr3:21192721-211... ; (*SWP) sp|P36401|E13H_TOBAC (e_value=2e-31) Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum; ">
      <seq>ggggactgctcaattttcttttctttgccaattaccatggcttgtaccaaactacattttccaattaccgcgacgactctgctggtgatacttatattggctaccttagatttcacaggtgcacaaacaggagtttgttatggaagaaatgggaatggattaccatctccagcagatgttgtggctctatgtaatcgaaacaatatacgaagaatgagaatctatgatcctcatcaaccaactctccaagccctcagaggctcgaatattgaactcatactaggcgtgccaaatcctgaccttcagaatatcgcgtctagccaagctaacgcgaatgcttgggtccaaaacaatgtnaggaacnanggntaatgttaagttcangnnnatagntgnttggaaatgaagntagtccattaaatggcaacgcgcagtatgtgcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50570" stop="51732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50866" g_stop="50983" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51432" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="446" r_length="328" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U591333" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U591333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50866" e_stop="50983"/>
          <exon e_start="51107" e_stop="51432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTGCTCAATTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGG-TAATGTTAAGTTCAGGTATATAGCTG-TTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTC</genome_strand>
        <mrna_strand>GGGGACTGCTCAATTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG...........................................................................................................................GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTNAGGAACNANGGNTAATGTTAAGTTCANGNNNATAGNTGNTTGGAAATGAAGNTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592579" ref_strand="+" ref_description="SGN-U592579 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|498926|emb|CAA52872.1| (e_value=6e-85) glucan endo-1,3-beta-D-glucosidase [Lycopersicon esculentum]; (*ATH) AT3G57260.1 (e_value=2e-45) | Symbol: None | glycosyl hydrolase family 17 protein, similar to glucan endo-1,3-beta-glucosidase, acidic isoform precursor SP:P33157 from (Arabidopsis thaliana) | chr3:21199496-21200838 REVERSE | Aliases: F28O9.110, BETA-1,3-GLUCANASE; (*SWP) sp|P36401|E13H_TOBAC (e_value=2e-75) Glucan endo-1,3-beta-glucosidase, acidic isoform PR-Q' OS=Nicotiana tabacum; ">
      <seq>ccggtttcttgccgaatcgggacgaaggccagttgccatggctcgtaccaaactacattttcccattaccgcgacgactctgctggtgatacttatattggctaccttaaatttcacatgagcacaaacaggagtttgatctggaagaaatgggaatggattaccctctccagctgatgtagtggctctatgcaatcgaaacaatgtactaataatgagaatctatgatcctcatccaccgactctccaaggccttagaggctccattattgaactcatattaggcgggccgaatcctgatcttcggaacatatcgtctgcccaagctaacgcgattgcttgggtccagaacaatgttacgaactatgggaatgttcagttcaggtatatatctgatggaaatgaaatgattccattaagtggaaacacgcagtatgtacctttcgtgatcaatgcgatgagaaacattcagaacgcgatttctggagctggcctaggaaacctgatcaaagaatctactgctatggaaaccgaacttactacagatactcaccctccatcaagaggcaagtttcaagacaacgtccgagggtatgttgatcccatcattatatcctgagtagctaaccgctcaccttcacttgtcgacatatatccatacttcgctctagcagacaatcaagctattaagcttgactacgcgttgtttacatcccctggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="50592" stop="52011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50901" g_stop="50983" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="119" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.876" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51107" g_stop="51711" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="724" r_length="605" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U592579" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50901" e_stop="50983"/>
          <exon e_start="51107" e_stop="51711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAGGTACTTACACAGTTTTAAAAATCGTTATACTGACAGTGTGTATAACTTATATCTTTCTAGTTGTCGTGATATACATAGATTCATCATGATCACGAGCTAATAGACAATAATATTGTTATACAGGTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTT</genome_strand>
        <mrna_strand>CATGGCTCGTACCAAACTACATTTTCCCATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAAATTTCACAT...........................................................................................................................GAGCACAAACAGGAGTTTGATCTGGAAGAAATGGGAATGGATTACCCTCTCCAGCTGATGTAGTGGCTCTATGCAATCGAAACAATGTACTAATAATGAGAATCTATGATCCTCATCCACCGACTCTCCAAGGCCTTAGAGGCTCCATTATTGAACTCATATTAGGCGGGCCGAATCCTGATCTTCGGAACATATCGTCTGCCCAAGCTAACGCGATTGCTTGGGTCCAGAACAATGTTACGAACTATGGGAATGTTCAGTTCAGGTATATATCTGATGGAAATGAAATGATTCCATTAAGTGGAAACACGCAGTATGTACCTTTCGTGATCAATGCGATGAGAAACATTCAGAACGCGATTTCTGGAGCTGGCCTAGGAAACCTGATCAAAGAATCTACTGCTATGGAAACCGAACTTACTACAGATACTCACCCTCCATCAAGAGGCAAGTTTCAAGACAACGTCCGAGGGTATGTTGATCCCATCATTATATCCTGAGTAGCTAACCGCTCACCTTCACTTGTCGACATATATCCATACTTCGCTCTAGCAGACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568668" ref_strand="+" ref_description="SGN-U568668 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157345891|emb|CAO15406.1| (e_value=3e-46) unnamed; (*ATH) AT3G19870.1 (e_value=2e-42) |; ">
      <seq>aaccgagttttgaagactcggactcgggccgagtcattacccaacaaatgtcaccggaactcaaacccttatcggcgcaagaatgggaaaatctaatcgacgattacaaccacggtggttcacggcggctccggtggacttccatcaactacgccgccgttcctcttcttgacctcacactttcatcacttctccggaaagatatccctcacaatctcaaactccagctcctcatcttcatcgaagaacacttcagcacagacgagaacgacatcgtttcacctaatttcctcagccgtctcctcgaagccctccggtcagtaatccaatcaccaaacgacggcgtttcaacgtcgttcgctctcaaggaacagtttctcatctcctcaacttcaattttcgttaattacgtgggttatacatcgagttgtctcgattctagctttgttactcctcttgaaagtttaattgagcttttgttaactattattaaccggccgaatcatagcgttgaccggcaaactcgatcaattgcttgcgagtgtttacgtgaattagaaactgcttttccttgtttactttcggaaattggatcacatttgtggagtttgtgccaaaatgagcgtactcatgcttcccaaagctatgcattattgttagcaactgttgttcataacattgctagattaaaacctactgtttcattcagtaattcttcgacgttggttccgtttagtgnacctaggtttttggttgatgaaaatgntaaaaatggncattttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="52496" stop="53879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52796" g_stop="53579" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="784" r_length="784" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U568668" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52796" e_stop="53579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCGAGTTTTGAAGACTCGGACTCGGGCCGAGTCATTACCCAACAAATGTCACCGGAACTCAAACCCTTATCGGCGCAAGAATGGGAAAATCTAATCGACGATTACAACCACGGTGGTTCACGGCGGCTCCGGTGGACTTCCATCAACTACGCCGCCGTTCCTCTTCTTGACCTCACACTTTCATCACTTCTCCGGAAAGATATCCCTCACAATCTCAAACTCCAGCTCCTCATCTTCATCGAAGAACACTTCAGCACAGACGAGAACGACATCGTTTCACCTAATTTCCTCAGCCGTCTCCTCGAAGCCCTCCGGTCAGTAATCCAATCACCAAACGACGGCGTTTCAACGTCGTTCGCTCTCAAGGAACAGTTTCTCATCTCCTCAACTTCAATTTTCGTTAATTACGTGGGTTATACATCGAGTTGTCTCGATTCTAGCTTTGTTACTCCTCTTGAAAGTTTAATTGAGCTTTTGTTAACTATTATTAACCGGCCGAATCATAGCGTTGACCGGCAAACTCGATCAATTGCTTGCGAGTGTTTACGTGAATTAGAAACTGCTTTTCCTTGTTTACTTTCGGAAATTGGATCACATTTGTGGAGTTTGTGCCAAAATGAGCGTACTCATGCTTCCCAAAGCTATGCATTATTGTTAGCAACTGTTGTTCATAACATTGCTAGATTAAAACCTACTGTTTCATTCAGTAATTCTTCGACGTTGGTTCCGTTTAGTGTACCTAGGTTTTTGGTTGATGAAAATGTTAAAAATGGACATTTTCA</genome_strand>
        <mrna_strand>AACCGAGTTTTGAAGACTCGGACTCGGGCCGAGTCATTACCCAACAAATGTCACCGGAACTCAAACCCTTATCGGCGCAAGAATGGGAAAATCTAATCGACGATTACAACCACGGTGGTTCACGGCGGCTCCGGTGGACTTCCATCAACTACGCCGCCGTTCCTCTTCTTGACCTCACACTTTCATCACTTCTCCGGAAAGATATCCCTCACAATCTCAAACTCCAGCTCCTCATCTTCATCGAAGAACACTTCAGCACAGACGAGAACGACATCGTTTCACCTAATTTCCTCAGCCGTCTCCTCGAAGCCCTCCGGTCAGTAATCCAATCACCAAACGACGGCGTTTCAACGTCGTTCGCTCTCAAGGAACAGTTTCTCATCTCCTCAACTTCAATTTTCGTTAATTACGTGGGTTATACATCGAGTTGTCTCGATTCTAGCTTTGTTACTCCTCTTGAAAGTTTAATTGAGCTTTTGTTAACTATTATTAACCGGCCGAATCATAGCGTTGACCGGCAAACTCGATCAATTGCTTGCGAGTGTTTACGTGAATTAGAAACTGCTTTTCCTTGTTTACTTTCGGAAATTGGATCACATTTGTGGAGTTTGTGCCAAAATGAGCGTACTCATGCTTCCCAAAGCTATGCATTATTGTTAGCAACTGTTGTTCATAACATTGCTAGATTAAAACCTACTGTTTCATTCAGTAATTCTTCGACGTTGGTTCCGTTTAGTGNACCTAGGTTTTTGGTTGATGAAAATGNTAAAAATGGNCATTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U572814" ref_strand="+" ref_description="SGN-U572814 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|147836146|emb|CAN74766.1| (e_value=3e-62) hypothetical; (*ATH) AT3G57190.1 (e_value=6e-61) | Symbol: None | peptide chain release factor, putative, similar to SP:P07012 Peptide chain release factor 2 (RF-2) {Escherichia coli}; contains Pfam profile PF03462: PCRF domain | chr3:21177382-21179355 FORWARD | Aliases: F28O9.40; (*SWP) sp|P74476|RF2_SYNY3 (e_value=2e-19) Peptide chain release factor 2 OS=Synechocystis sp. (strain PCC 6803) GN=prfB; ">
      <seq>ggggatatttttcttagaccatagaaaaatataaaaataagaatgtggcacgtgcacatcacctgcaccactctccatttaccaaaacccgtgttcttcgcggcggccggaaaatcaagaaacattttatccaccaccagtctactaccagtatggctaaaatggcggctgaccctttttctgtacggatagaagctacttgttcgtcttgtccattgaaccttcgaagctcaaagacagcaacttttcgaattcaagctcataataatcagcacacagatgacaagaacagattctacaaagagcttggaacatttgctttgaaaaggaagattgaagatttggtactccgtgctgaaatgttagcaccaacagcactggaatttgaagaagcaagacgcctcaaacaggaagaaattattcgggaatatgatttgtgggatgatgtagccaagtcaaatgaggaccttgtgcaattagctgaaagcgccaaggccgttgatgccctcaaagaccttagatacaaggctgaagaagctaagttgattacggagctagcaggaatggattctatcaactatgactttctaaagcaggcttatacagcttgtgtcagtgtgaataagacattagataagtatgaaatgtccaagcttcttagggagccatatgatatggagggagcatgtgtcaccattgaatctggaagcgagggcatttactcgaagatttgggcagaaaaactcacaagaatgtatatcaaatgggcagaaaaacanggtcatanngcgaggatagttgagaaacaanantcanagagtggtggtatcaaatatgtgatgattganttagaatttaagtcagcatatggctatctttcnnggnaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="62953" stop="60132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62653" g_stop="62345" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61781" g_stop="61564" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="527" r_length="218" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.734" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61437" g_stop="61237" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="728" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61236" i_stop="60595" i_length="642">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60594" g_stop="60432" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="891" r_length="163" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U572814" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U572814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62653" e_stop="62345"/>
          <exon e_start="61781" e_stop="61564"/>
          <exon e_start="61437" e_stop="61237"/>
          <exon e_start="60594" e_stop="60432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATATTTTTCTTAGACCATAGAAAAATATAAAAATAAGAATGTGGCACGTGCACATCACCTGCACCACTCTCCATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTGGTTTGTTTCTTCTCTTCTCTGCTTGTGTTCTTGTTTTAGACATAAAGTAAATCTAACAAACAAAAAAAAGAAGTTAACATTTTTAGTAGTTTTTAAGTTTGAGTTAATGGTTAAAAACACTCCTGAAGTCTGAACTATCACTTTTTCGTAGTTCAGCTATTTATTGTTCTATTTAGCTTTGCGAGTTTCATGCCTCAATTATCACTCCTGTTTGTATTAAAACACACTTAAGATGCAGAGTTGGTCTAAGTGTGTTTGTTGTCACTTGGGAATAAATATTTGGCCAATTCAACATCAAGGTTTGTTTCAATACAAAGAGATTTATAATGCGTGTATCCTTAGAAACAATAATAGGTAATATAATTGAAGAAGAAGATGGCCATATACATAAAAGTCGTGTTCTTTCATGAACAAATGACTTTTCATAACAGTCATGTTCTTTCACAAACAGATGTGTTTATTCAATTTAAGACCTCTATATATTACAAAAATCAAAATATCCAACATGTATAGTAAGTACTAATCTGTTAATTGTTGATGGTATTGATGATTTCATAATGTAGGAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAGGTGTCATGCAAGATAACTTTAAAGCTAATTCTCACTTGTCAGCATATGTTTATTGCCTAGTTATTTAAGACTTAAAACGGAAAACCATCAAACTCAAATTCTATTGCATTGAGTGTGATTCTGCAGGCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAGGTATTCACCTGTGATCTCTTGCTATAATCCCGCATGTACTTGCTGAGTCAATAGTAAAGGTCCATATGCATCTCAGGTGAAAAAGGAGGCCAGTAAGTGTTCTGAAATATAAACGTGCTATTAGCTAGGTATAAGAAGTGGAACTTTCATGATGAGTTCCCTGCATTTGAAGTTGCAAGGAGGGAAGGGGGTTATAATTGTATTATCAGTGCCCTTGCTCCTTATTACTGTTGCTTATATACTCATCTCAACCATAAAGTTAATAGTCTATCTGCACCATAGATTCTTCTCCCTAGAAGATTCAAACTTGTACTGTGAGAAACTTATTTTACATGGAAATGATTCTGAACTTCCAATTTTTTGTTCTTTTATGGAAAACATCGAATTTCAGAGAGGAGGTGGTAGTTTGTAGACCTGATGCCTGATAAGGATTTATAGTTGAGATTAGAAAGTAGGTATACTAGCCTTCTGCTCCTAGCAATTCGTCTTCAAGCTGCTCATGAGCATCTATTTATTCTACTTATTCAAAATCGAAGAGATGGTTTTTCTTCAAGCTGATGTAGTTTTATTTCCTTAGAAATTTCATTCTAGGCAAGACTATGGTACTGTTTCTCAATGATAGACTTATCCACTTTGATCCAGATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTTAGAATTTAAGTCAGCATATGGCTATCTTTCAGGGGAAAGAG</genome_strand>
        <mrna_strand>GGGGATATTTTTCTTAGACCATAGAAAAATATAAAAATAAGAATGTGGCACGTGCACATCACCTGCACCACTCTCCATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAG..............................................................................................................................GCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACANGGTCATANNGCGAGGATAGTTGAGAAACAANANTCANAGAGTGGTGGTATCAAATATGTGATGATTGANTTAGAATTTAAGTCAGCATATGGCTATCTTTCNNGGNAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567631" ref_strand="+" ref_description="SGN-U567631 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|38564521|gb|AAR23754.1| (e_value=2e-68) dihydroneopterin aldolase [Lycopersicon esculentum]; (*ATH) AT3G11750.1 (e_value=6e-39) | Symbol: None | dihydroneopterin aldolase, putative, similar to SP:P28823 Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) {Bacillus subtilis}; contains Pfam profile PF02152: dihydroneopterin aldolase | chr3:3715077-3715910 REVERSE | Aliases: F26K24.4; (*SWP) sp|Q9SF23|FOLB1_ARATH (e_value=5e-38) Dihydroneopterin aldolase OS=Arabidopsis thaliana GN=FOLB1; ">
      <seq>gtaaactttcagtaaaaaatattattcagattccggcggcttcccggctgttcgccgaccaaaagccagtaatagcaaaacccagctccggtcacatggacatgccaaaaggagacaaacttgttctaaggggtttaaaatttcatggataccatggggtgaagcaagaggaaaggaagcttggtcagaagttcctggtagatgttgatgcttggatggatcttcgatctgctggtgaatccgactgcttgtccgatactctaagttatactgatatatacagactagttaaagaggttatggaggggccacctaaaaatctgctagaatctgtggctcaactcattgcatcgacaaccctcaccaagtatccagaggtatctgctgttcgcgttcaagttggaaagcctcatgtggccgtccaagggcctgttgactacttgggtgtcgagatcattagatacagaagtcttgatgttcaaaactaggacagtaatatgctttgtattattagcaacttcaaatttctgctgtttgacaatcattttcaagccagtacctgcccgggcggcccgctcccgaaaatccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="67960" stop="64815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67660" g_stop="67571" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67570" i_stop="66371" i_length="1200">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66370" g_stop="66178" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="283" r_length="193" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65390" g_stop="65119" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="555" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U567631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67660" e_stop="67571"/>
          <exon e_start="66370" e_stop="66178"/>
          <exon e_start="65390" e_stop="65119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCGGTATGTTCTAAAGCTTTAGCCTTTTATTATTATTTGTTCTTTCTTGAGCTGATTTGAGCTTATTCTCAACTAATTTGGGTCTCTGATATCATTTAATTATTCAAAATAAAAGTTTGGGGTTTGAAAATTCAATTGATTTTGATATATAAGCATGTAAAGGTAGAATCTTTATGACTGCATACCAAGTATTTGATGTGGAGCTGCAAAAAAGGAATTTTCTGAAACAGAAGTTATGGTTTTTTTTTGTTTTTTTTTTAGAATGTACTATTGCTAGAGTTTGGTTGAGCAGATGTCGAATCGCCTTTGGCTAGTTCGTGTGTTTACTTCTTCATAGTTTGAAACCCCTAAGTGAAAATCCTGGCTCCGCTAGTGTTTGGGGATTACACTCAGTGGTGGATCCAGGATTTTCATTAAGGAGGGTACGAAAAAAAAGAGTAGTGGTTTGAACTACTAAGCCAACCTCTAATCTTATATTTAGGAGGTTCAAAATTAATATGTAAACATAAAAATTCTTTAAAATACCTTAAATATACAACGTGGGCATACTCTAGGTCCGCCACTGATTACAGTGGGTATATTGTTGTAATAATGCTGGAGAGAGCTAGTAGGATCTCATGAGGGGACCAATCATTTGCAAGACTTATTTCAACTTCATGAAGGCAAAGTTGTTAAAAGATGTTTAAAGAACCTTGTTTTTTGGTTAGTTGGATAGATATATGTACTCGACAAAATTTACAAGTTAAGGTTAGCTCTAGAGATCCTTGATAGTTCATTGATGTCAACCAAATTAGTCTTTTGAAAGTAGTTCCTAGAATGTCTACGCATACTGCGTCATTTGCAAATACCGTAGGAACTATCAAAATACTTAGCTTATCAAAAAGTTTCTTCTTATCTCCTCCTTAGCAAGAAGGTCAGCCAACCTATTTTGCTCTCGGTAGTTATGTTTGATGACTGTATTTCCCAGTCCTTGCATCAATAACCTGCGTTCAGAAGTAATAGAAGAGTGAGGATGTGTCCTTGATTAATCATTTTATTACCTCCATAGGACCAAATTGCTAGGACATAATTGATCACATGACCTGCTTTAGTTTGCAATATTTATGAGGATTTTTTTTTTGTATAACCATCTGGTATCCAGTTCGAGCCCCTGTGAATGGTGAATCCCCTGTAACGACTTCTTTTATGAGTATCCAATGACAGGTCACATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAGGTGAGTGATGCTTTCGAGTTTAATCATTTTGCATTTTTGAGAGTTGAGATGAATGAACAGAACAAACTTGATTTCATAGCTTAATAAATGAAACATCTCGAACGTTTATGTAACAAGGTTCTATTGCTCAGAGGTCAGTTTTAATAATACTCTTTTCACCAGATAGAAAATATACTAGGCTTGAGCAGTTTCACCAGAGTTAAACCGGAAGAGATGAATAGAACAGTACAGACGAGACCTCAGAATTGGGTTTTAAACTTCTGTAAAAGGACTAATGATTTTATAAGTTCTCGTAGTAAGAACTTGACTCATTTGAAACATCTTCGAGAGCACACTGAAGCAGATTTTTTGATGTTATGTAGTTTCTTGGATATTCCATCATACATGGGAATTTTGATGCCACTGCTAGAGGCTCTTGTAATCTCCTACTTTCTTGAGGAAACATTGGACTATTGCCTAATTATTATTTATCTTAGAGTAGTTCACTTTGCACCTAAGGGCGGGATCTAGTGGTCTGGATCCTGATAACTCAAGTAAAATCTCTTGACAGCGTGTGGCAATAAGAAAAGCCCGAAATTCCAATAGCTTAATCAGTGATATAAGGTAACTTTCTATTGGCGCTAACTGATCTCCTGGACGGTGTTTGCTTGTAAGTTACAGTTTCTTTTCTTGTCTTACCAAATCTTAAGAATAAACATTTTCACAGATCAATTTTCTAGCTTGGTTCGTATGCTTTTTTTGGCGTGATCATTCATTGGTTCTATCTTTTAAATCTACAAATTGGCAGACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCA</genome_strand>
        <mrna_strand>GTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U589594" ref_strand="+" ref_description="SGN-U589594 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agtaaactttcagtaaaaaatattattcagattccggcggcttcccggctgttcgccgaccaaaagccagtaatagcaaaacccagctccggtatgttctaaagctttagccttttattattatttgttctttcttgagctgatttgagcttattctcaactaatttgggtctctgatatcatttaattattcaaaataaaagtttggggtttgaaaattcaattgattttgatatataagcatgtaaaggtagaatctttatgactgcataccaagtatttgatgtggagctgcaaaaaaggaattttctgaaacagaagttatggtttttttttgttttttttttanaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="67961" stop="67010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67661" g_stop="67310" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U589594" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U589594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67661" e_stop="67310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCGGTATGTTCTAAAGCTTTAGCCTTTTATTATTATTTGTTCTTTCTTGAGCTGATTTGAGCTTATTCTCAACTAATTTGGGTCTCTGATATCATTTAATTATTCAAAATAAAAGTTTGGGGTTTGAAAATTCAATTGATTTTGATATATAAGCATGTAAAGGTAGAATCTTTATGACTGCATACCAAGTATTTGATGTGGAGCTGCAAAAAAGGAATTTTCTGAAACAGAAGTTATGGTTTTTTTTTGTTTTTTTTTTAGAAT</genome_strand>
        <mrna_strand>AGTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCGGTATGTTCTAAAGCTTTAGCCTTTTATTATTATTTGTTCTTTCTTGAGCTGATTTGAGCTTATTCTCAACTAATTTGGGTCTCTGATATCATTTAATTATTCAAAATAAAAGTTTGGGGTTTGAAAATTCAATTGATTTTGATATATAAGCATGTAAAGGTAGAATCTTTATGACTGCATACCAAGTATTTGATGTGGAGCTGCAAAAAAGGAATTTTCTGAAACAGAAGTTATGGTTTTTTTTTGTTTTTTTTTTANAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593782" ref_strand="+" ref_description="SGN-U593782 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>taaatgaccttaactcatagctttgtttaatggagaaatgaaacttgaatgtcgctctttttttcacttttgctcaactgatttctacaatttttgggtcttttacagtaatgttgtttacatgaagttaagctaaagaaaggatatcatactatgaacatggctagatacaagagtgacacctaccttgctctatacaaaggttacatgaacctaaaacttgaagactttctaaactgctgcaaactaacatctgacttcctgaacgtaaaccaagagactgtgcattcaacgaggctgctggatgctgcggaaactgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="68579" stop="69501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68879" g_stop="69201" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U593782" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68879" e_stop="69201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATGACCTTAACTCAGAGCGTTGTTTAATGGAGAAATGAAACTTGAAAGTTGCTCTTTTTTTCACTTTTGTTCAACTGATTTTTACAATTTTTTGGTCTTTTACAGTTTTGTTGTTTACATGAAGTTAAGCTAAAGAAAGGATATCAGACTATGAACAAGGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGTTACATGAAACTAAAACTTGAAGACTTTCTAAACTGCTGCAAACTAACATCTGACTTCCTGAAAGTAAACCAAGAGACTGGGAATTCAACGAGGCTGCTGGATGCTGCGGAAACTGTTCC</genome_strand>
        <mrna_strand>TAAATGACCTTAACTCATAGCTTTGTTTAATGGAGAAATGAAACTTGAATGTCGCTCTTTTTTTCACTTTTGCTCAACTGATTTCTACAATTTTTGGGTCTTTTACAGTAATGTTGTTTACATGAAGTTAAGCTAAAGAAAGGATATCATACTATGAACATGGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGTTACATGAACCTAAAACTTGAAGACTTTCTAAACTGCTGCAAACTAACATCTGACTTCCTGAACGTAAACCAAGAGACTGTGCATTCAACGAGGCTGCTGGATGCTGCGGAAACTGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581174" ref_strand="+" ref_description="SGN-U581174 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|8489786|gb|AAF75749.1|AF261139_1 (e_value=6e-61) dehydration-induced; (*ATH) AT2G41430.3 (e_value=7e-25) | Symbol: None | dehydration-induced protein (ERD15), identical to dehydration-induced protein ERD15 GI:710626 from (Arabidopsis thaliana) | chr2:17276367-17277615 FORWARD | Aliases: None; ">
      <seq>gggcgattggcggccaatcggccgaattgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtatgcacaatctgtctatatcttgtaattaacctacagtcagcagaaagataatgttcggtttgcatggtttactgaagttttagtgcagaacctgtcttgaaaccgaaaaaagtgaggaacctttagtcaattagatctttatactataaactcaacgagtctggggatccctgctggtgtcggaatttgtgtgagcctgttgaaacaagatgggaaaattcctacatgcctggtcttagttgtgattatttttggtgtttactatggttactcttgtatgatgatttgcttataacttgataaaacaggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaacaacgctttgagttaaggtcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71342" stop="68580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="81" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="68880" g_length="1091"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="1172" r_length="1091" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U581174" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1148</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U581174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="68880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAGGTCATTT</genome_strand>
        <mrna_strand>AATTGATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTTTGAGTTAAGGTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578781" ref_strand="+" ref_description="SGN-U578781 Tomato 200607#2 [90 ESTs aligned] (*GB) gi|8489786|gb|AAF75749.1|AF261139_1 (e_value=1e-86) dehydration-induced; (*ATH) AT2G41430.2 (e_value=5e-30) | Symbol: None | dehydration-induced protein (ERD15), identical to dehydration-induced protein ERD15 GI:710626 from (Arabidopsis thaliana) | chr2:17276365-17277620 FORWARD | Aliases: None; ">
      <seq>gggcgattggcggccaatcggccgaatttgatacgtgtacgagttcgtctctgtagctgaagaacaaaaaatctgtttaaaggtattaatttcgaaaaagcaatatggcattagtttctggaggaagatcaacgctgaatccaaatgcgcccctctttgttccttcatttgtgcgccaggtagaggatttttcaccagaatggtggaacttggtgacaacttcaacatggttccatgactactggatgagccagaaccagggagaggaatatggtgctggtaatgatgttgctgatttgcttcctgaaaatattgatctcaatgttgatgaggacatcttgaacatggaagctcagtttgaggaatttcttcaatcttccgaaaatgagcaacaaggaattaagtcatctctctatggtgtcaatgcgatgccacaatatggtttaccatctgatgcactgattagaacattgagttcaccaagatcccccattggtccacccaaatactttgagaagccatccaagatcgtgagcccgaggaacagtttccgcagcatccagcagcctcgttgaattcccagtctcttggtttactttcaggaagtcagatgttagtttgcagcagtttagaaagtcttcaagttttagtttcatgtaacctttgtatagagcaaggtaggtgtcactcttgtatctagccttgttcatagtctgatatcctttctttagcttaacttcatgtaaacaacaaaactgtaaaagaccaaaaaattgtaaaaatcagttgaacaaaagtgaaaaaaagagcaactttcaagtttcatttctccattaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71341" stop="68604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71041" g_stop="70985" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="82" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69612" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="441" r_length="359" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69300" g_stop="68904" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="838" r_length="397" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U578781" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71041" e_stop="70985"/>
          <exon e_start="69970" e_stop="69612"/>
          <exon e_start="69300" e_stop="68904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAA</genome_strand>
        <mrna_strand>ATTTGATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG.......................................................................................................................................................................................................................................................................................................................GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590625" ref_strand="+" ref_description="SGN-U590625 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>actgattgttacaattttttggacttttacagtttttgttgttccatgaatttaagctaaagaaaggatatcagactatgaacaaggctagatacaagagtgacacctaccttgctctatacaaaggttacatgaaactaaaacttgaagactttctaaactgctgcaaactaacatctgacttcctgaaagtaaaccaagagactgggaattcaacgaggctgctggatgctgcggaaactgttcctcgggctcacgatcttggatggcttctcaaagtatttgggtggaccaatgggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="68655" stop="69557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68955" g_stop="69257" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U590625" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U590625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68955" e_stop="69257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGATTTTTACAATTTTTTGGTCTTTTACAGTTTTGTTGTTTACATGAAGTTAAGCTAAAGAAAGGATATCAGACTATGAACAAGGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGTTACATGAAACTAAAACTTGAAGACTTTCTAAACTGCTGCAAACTAACATCTGACTTCCTGAAAGTAAACCAAGAGACTGGGAATTCAACGAGGCTGCTGGATGCTGCGGAAACTGTTCCTCGGGCTCACGATCTTGGATGGCTTCTCAAAGTATTTGGGTGGACCAATGGGGGAT</genome_strand>
        <mrna_strand>ACTGATTGTTACAATTTTTTGGACTTTTACAGTTTTTGTTGTTCCATGAATTTAAGCTAAAGAAAGGATATCAGACTATGAACAAGGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGTTACATGAAACTAAAACTTGAAGACTTTCTAAACTGCTGCAAACTAACATCTGACTTCCTGAAAGTAAACCAAGAGACTGGGAATTCAACGAGGCTGCTGGATGCTGCGGAAACTGTTCCTCGGGCTCACGATCTTGGATGGCTTCTCAAAGTATTTGGGTGGACCAATGGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593105" ref_strand="+" ref_description="SGN-U593105 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|8489786|gb|AAF75749.1|AF261139_1 (e_value=6e-32) dehydration-induced; (*ATH) AT2G41430.3 (e_value=1e-16) | Symbol: None | dehydration-induced protein (ERD15), identical to dehydration-induced protein ERD15 GI:710626 from (Arabidopsis thaliana) | chr2:17276367-17277615 FORWARD | Aliases: None; ">
      <seq>gctctgtagctgaagaacaaaaaatctgtttaaaggtattaattccgaaaaagcaatatggcattactttctggaggaagatcaacgttgaatacaaatgctcccctctttgttgctttatttgcgcgccaggtaaaggatatttcaccagaatggtgcaacttggtgacaacttaaacatggctccatgactactggatgagccacaaccagcgataggaatatggcgctggcaatgatgttgctgatttgcttactgacaatattgatctaaatgtcgatgaggacctcttgaacatggaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="71318" stop="69400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71019" g_stop="70985" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69970" g_stop="69700" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="306" r_length="271" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U593105" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71019" e_stop="70985"/>
          <exon e_start="69970" e_stop="69700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAGGTATTGTAAAAACGCCATTATAGCTTCATTCAAGCTTTCAAGTATTTTTCTCGCTTCTAATCTGTCGATCTGTTGAATCCTATCTAGTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATGTATATGTTGTTAGCTTCTGTTTTTATGAGTTATCTATGCTGATGCATGAAAATGTTTGAAAATTGTGATTAATTGTGATATATGTTGTTTGTTGAGTAGTTTTAGATTGGTTTCTGATGTCAATTTGAGTCAATATCTTGTACTTTTTGTTGATGAAATAGCGAAGACTATGGTTTTGAGTAGATCTGATGAGGATCGAGGAGTTTTTCGAGAAAGTGAGGTTAATTGTTATTGGATTATCTGAGAGAGGATGGGTGGAGCATGTTTGGCCGTGGAAAGATGAGTTTTTTGATTTGTATGACTGTTATGAGTTAGGGTTTGGAGTAGCGAGTTGAAATTGCAGTAGAAGAAGGCCAGTAATTGTGGTTATGTTGCTTGGACTCTTTTAAAAATGGTGATGGTTGCGTGTCTGATTGTCCAAAAGTAGTGTTTGGGTTTTTTGAAGGATCCGACACGGTGTGCCATCATTTTTGGAGAGTCCGAGCAACATAGATGTGAAGTATTTACCTCATGTCTGTTGCGCGATGGTTTTGACTGTGTAGTAATAGGTGCTAGATAGAATCATTGCTCAGAGTTTAGAAAGGATACTGCTGAAGTTTGGTTAGAGCTATATCCACCTAAGACGAGATAATTCGGGTTTTCTAAGTCGCATGTTGATTGAGAATGTTAATTTTCCTTTTCTGTAGTGTTCAGTTACCATACTTTGATAATATTTGTTCATGAATTGGTTTATTAGGCCAGGAAAAACTTCTACTTTAGTTCTGTGGGTGATTTTAATATTGAAGTTGAAACTCGACGTACTAAATATGGTCATATTCGGTATGTCATGCACTAACGTGTTTTTTGTTTTATCGAAAAACTTTAGGTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCT</genome_strand>
        <mrna_strand>GCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAATTCCGAAAAAGCAATATGGCATTACTTTCTGGAGGAAGATCAACGTTGAATACAAATGCTCCCCTCTTTGTTGCTTTATTTGCGCGCCAGGTAAAGGATATTTCACCAGAATGGTGCAACTTGGTGACAACTTAAACATGGCTCCATGACTACTGGATGAGCCACAACCAGCGATAGGAATATGGCGCTGGCAATGATGTTGCTGATTTGCTTACTGACAATATTGATCTAAATGTCGATGAGGACCTCTTGAACATGGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586581" ref_strand="+" ref_description="SGN-U586581 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>ttttttttaattagctctttgatggctggtcttcaatacaaattttttccaacagattttttcttcccaattcaaaaaacagttagtggagaaaacacatcaaagcaaaatctcttaatcaagattagaaataatgatgagtccttaattgaggaatcaaagggcaaaattgtcattaacaacaacaagaagaatctcaaagctatttcttcatcttcattagctttgatttctgtgccaaaacagaagaaagatcaagattaatcaactgattattcttttaatcatatagtaattaattgtatgattaagaataatcttgttctctttgctatcttttctcctatttttttttctttgagtttaataaatatttaggaggcttttgggaaaagttattagatttgtttgatgtattatataagtttgcaattcaataagacaggaacaatagtttctatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="75239" stop="74174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74939" g_stop="74474" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U586581" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74939" e_stop="74474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</genome_strand>
        <mrna_strand>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGA-TTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565083" ref_strand="+" ref_description="SGN-U565083 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=6e-83) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=7e-16) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>aaaaagtgggaaatggatgtcattggtcctatagagccaaccgcttctaatggacacagattcattttggttgccactgattattttaccaagtgggttgaagcagcctcttacaagtcggtagccaagaaagtggtagccaattttgtccgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggtgcaaatctcaacagtcatctgatgaaagagatatgtgatcaattcaagattattcaccggaggtcaactgcttatcgccctcaaatgaacggagttgtagaggccgccaacaagaatatcaagaaaattttgaggaaaatgattgacaagcagcgaggttggcatgaaatattgtcgtatgctctactaggttatcgaacgacggtcagaacatcgactggggctactccatacttgctagtatacggaacagaagcagtcgtacctattgaagtcgacatgccgtcactaaggatcatccaagaagctgaattaagtaacgctgagtgggttagcaaacggattgatcaactaactttgattgatgagaagaggatggtcgctgtttgccattgccagttgtatagacaaagaatgactcgcgcttttcacaaaagagtaagagccagaattttgaagttggccagttggttcttaagcgtatttttcctcatcaagatgagtacaaaggaaagttcgcaccaaactggcaaggtccctacatggttcataaagtactttctgggaggtgttttggccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79854" stop="78472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79560" g_stop="78772" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U565083" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79560" e_stop="78772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACAGGCAAGGTCCTTACATGGTCCGCAAAGTACTATCT-GGAGGTGCTTTAGTCTTG</genome_strand>
        <mrna_strand>AAAAAGTGGGAAATGGATGTCATTGGTCCTATAGAGCCAACCGCTTCTAATGGACACAGATTCATTTTGGTTGCCACTGATTATTTTACCAAGTGGGTTGAAGCAGCCTCTTACAAGTCGGTAGCCAAGAAAGTGGTAGCCAATTTTGTCCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGATCAATTCAAGATTATTCACCGGAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGTTGTAGAGGCCGCCAACAAGAATATCAAGAAAATTTTGAGGAAAATGATTGACAAGCAGCGAGGTTGGCATGAAATATTGTCGTATGCTCTACTAGGTTATCGAACGACGGTCAGAACATCGACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTATTGAAGTCGACATGCCGTCACTAAGGATCATCCAAGAAGCTGAATTAAGTAACGCTGAGTGGGTTAGCAAACGGATTGATCAACTAACTTTGATTGATGAGAAGAGGATGGTCGCTGTTTGCCATTGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAG-AATTTTGAAGTTGGCCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGATGAGTACAAAGGAAAGTTCGCACCAAACTGGCAAGGTCCCTACATGGTTCATAAAGTACTTTCTGGGAGGTGTTTTGGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588617" ref_strand="+" ref_description="SGN-U588617 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162496|gb|ABD28291.1| (e_value=4e-80) Integrase,; (*SWP) sp|P03360|POL_AVIRE (e_value=4e-12) Pol polyprotein (Fragment) OS=Avian reticuloendotheliosis virus GN=pol; ">
      <seq>cgttttgagacgggtgccacctcacgaacttaacgctatgagttcaccttggccatttgtagcttggggaatggatgtcatcagttctatagagtctaccgcttctaatggacatagattcattttggttgccattgattatttcaccaagtgggtggaagcaaccccttacaagtcggtaaccaagaaagtggtggtcgattttgttcgcaacaatctgatatgcagatttggagttccagaatccatcattactgataacggggcaaatctcaacagtcatttgatgaaacagatatatgaacaatttaagttattcatcgaaagtcaactgcttatcgcccccaaatgaacagagctgtagaagccgccaacaaaaatatcaagaagattttgaggaaaatgattgacaaacagcggggttggcatgaaatgttgccatatgcttttctaggttatcgaacgacggtcagaacatcgacttgggctactccatacttgctagtatatggaacagaggcagtcgtgcctgttgaagtcgagataccgtcattgcggatcatccaagaagctgaattaagtaacgccgaatggcttagcaaacagattgatcaactagccttaattgataagaagagaatagttgcgtttgccatggcaagttgtacagacagagaatgactcgcgcttttcacaaaagagtaagagccaggaattttgaagttggtcagttggttcttaagcgtatttttcctcatcaagacgagtacaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="79917" stop="78540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79618" g_stop="78840" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="777" r_length="777" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U588617" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U588617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79618" e_stop="78840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAA</genome_strand>
        <mrna_strand>CGTTTTGAGACGGGTGCCACCTCACGAACTTAACGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCAGTTCTATAGAGTCTACCGCTTCTAATGGACATAGATTCATTTTGGTTGCCATTGATTATTTCACCAAGTGGGTGGAAGCAACCCCTTACAAGTCGGTAACCAAGAAAGTGGTGGTCGATTTTGTTCGCAACAATCTGATATGCAGATTTGGAGTTCCAGAATCCATCATTACTGATAACGGGGCAAATCTCAACAGTCATTTGATGAAACAGATATATGAACAATTTAAG-TTATTCATCGAAAGTCAACTGCTTATCGCCCCCAAATGAACAGAGCTGTAGAAGCCGCCAACAAAAATATCAAGAAGATTTTGAGGAAAATGATTGACAAACAGCGGGGTTGGCATGAAATGTTGCCATATGCTTTTCTAGGTTATCGAACGACGGTCAGAACATCGACTTGGGCTACTCCATACTTGCTAGTATATGGAACAGAGGCAGTCGTGCCTGTTGAAGTCGAGATACCGTCATTGCGGATCATCCAAGAAGCTGAATTAAGTAACGCCGAATGGCTTAGCAAACAGATTGATCAACTAGCCTTAATTGATAAGAAGAGAATAGTTGC-GTTTGCCATGGCAAGTTGTACAGACAGAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGGAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602202" ref_strand="+" ref_description="SGN-U602202 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gaaggctggttctgagttggatctatgtttgatgaagggaagtagaccggaggtcttgcatcagcaatattagtaccaaatccaggtggaggcgcatcctgtctccgttgcatttcaactttcatttcagcaatctgttgcatcagttgcatgatcaattcattctgttccactacagtgggctgagcgaccacaacgtcagtaagacgcccttcgtcattgttgtctcccataactgtttttcctttatctgaatttgatcgagggaaggaatctgtaggacctttcgatctggtgaagtaaggatgatctgccagctttattgacacagatcagtaaaaaggtacctgaaaggtaaaaacaactcaaaggcaaatttgttagtgcatatccagagtacaaaatgcttaatatcgcacataaaaccgataaacacacaagtcgttttgtttgaggatatcttaacccacgaataaggacggatatatattttgaacaaacaggaatttgtttgtttggcgttatcttgggaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="85402" stop="86539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85702" g_stop="86239" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U602202" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85702" e_stop="86239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGATGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCTAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAGAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAGCACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</genome_strand>
        <mrna_strand>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGTTGCATGATCAATTCATTCTGTTCCACTACAGTGGGCTGAGCGACCACAACGTCAGTAAGACGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTATCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCCAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAAAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCTTAATATCGCACATAAAACCGATAAACACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGTTATCTTGGGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599814" ref_strand="+" ref_description="SGN-U599814 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cgaaaatggaggcttgtagacgatttcttcttcatcatcctcctcagtcacttcacggtcggggccactgttatctgctcccagatcatgggcgaggtattttccgccctttgggtcgctatgggtcgccaattcctcgtcgagcgccgcgtttctgtccaacaacacagcagtctcgatatctatcttcgcctctctcgcctttccttcgtgtatctctaaacgaagcaagttcaaccttttccttaggctttcggtttccatctcaacctccttctttctctttatctgtgacgccagatcttcatccaatgttgtgaccgcagctttgtagatcgccgtggtcgcgtctactttgagtccttcttccttaaccttctgaatctctcgagggggggcccggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="86244" stop="87237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86544" g_stop="86949" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U599814" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U599814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86544" e_stop="86949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTCGAGTGACTCGCTCGATC</genome_strand>
        <mrna_strand>CGAAAATGGAGGCTTGTAGACGATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCTAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCTTCCTTAACCTTCTGAATCTCTCGAG-GGGGGGCCCGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590798" ref_strand="+" ref_description="SGN-U590798 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>gccgagctttgtaacgtgggcttgtaacccgagtgggggcaacaatgtggtggaatgttgggtccatcttgatggatgggcttgaagggctaatgttctggcctgccctgtccaagcacagagttgggtcaagtggtctatacgaaagtatagccacttggcctttagagtgggatggactgcgtgaggctggtttcacagagcaacgactagtccccgctctgtgcagtggaaggatcacgggctagtgctctttgagtcctaacaaaaacctgataggttgcctaattaaaccatcactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="97807" stop="96903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97507" g_stop="97203" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U590798" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97507" e_stop="97203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATAGGCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</genome_strand>
        <mrna_strand>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATA-GCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565117" ref_strand="+" ref_description="SGN-U565117 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>acgtcagtttattaaccatatactcaaatcgttatctgatccaaatttctgacttttttttcctttttcgaatcccaatatgattctattaaatccaatctgtgccaaattgcagtgcgataaaatttattatttttcacattttctttgtattttttgaaaaagaagcattagcctgttcttgagttcttatcccttttctgggttttgctttgagaaattttagtttttttggttgattcctagaaccccttttgattttggtttgtggggttgcataaaaattgaatcttgatgttaaaagattgaatcttgatttctgggtgtgttgggttttgtgcttttgtcaagttgttgttggtgtttgagctgaattgacaagattttgtacaaagggataggttgaaacaggaaaagatagggaatttatctctttgactttcctaatatatgaggtattttctttgatctagtaggtctattcttgaactttaacttagctttgttaatttctggttcaatctgattactttgaatcttgtgaataacctttgtcanagtatcgttagtttctgtgttactttgatattcananatagtacaganctttgttgngctaatcttgttcaattggnataagtttagagcctttanattattangtatttgtgtattgctngtcttaacattttgctganc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="103642" stop="104940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103942" g_stop="104640" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="699" r_length="699" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U565117" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103942" e_stop="104640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGTTTATTAACCATATACTCAAATCGTTATCTGATCCAAATTTCTGACTTTTTTTTCCTTTTTCGAATCCCAATATGATTCTATTAAATCCAATCTGTGCCAAATTGCAGTGCGATTAAATTTATTATTTTTCACATTTTCTTTGTATTTTTTGAAAAAGAAGCATTAGCCTGTTCTTGAGTTCTTATCCCTTTTCTGGGTTTTGCTTTGAGAAATTTTAGTTTTTTTGGTTGATTCCTAGAACCCCTTTTGATTTTGGTTTGTGGGGTTGCATAAAAATTGAATCTTGATGTTAAAAGATTGAATCTTGATTTCTGGGTGTGTTGGGTTTTGTGCTTTTGTCAAGTTGTTGTTGGTGTTTGAGCTGAATTGACAAGATTTTGTACAAAGGGATAGGTTGAAACAGGAAAAGATTGGGAATTTATCTCTTTGACTTTCCTAATATATGAGGTATTTTCTTTGATCTAGTAGGTCTATTCTTGAACTTTAACTTAGCTTTGTTAATTTCTGGTTCAATCTGATTACTTTGAATCTTGTGAATAACCTTTGTCAGAGTATCGTTAGTTTCTGTGTTACTTTGATATTCAGAGATAGTACAGACCTTTGTTGTGCTAATCTTGTTCAATTGGTATAAGTTTAGAGCCTTTAGATTATTAGGTATTTGTGTATTGCTTGTCTTAACATTTTGCTGAGC</genome_strand>
        <mrna_strand>ACGTCAGTTTATTAACCATATACTCAAATCGTTATCTGATCCAAATTTCTGACTTTTTTTTCCTTTTTCGAATCCCAATATGATTCTATTAAATCCAATCTGTGCCAAATTGCAGTGCGATAAAATTTATTATTTTTCACATTTTCTTTGTATTTTTTGAAAAAGAAGCATTAGCCTGTTCTTGAGTTCTTATCCCTTTTCTGGGTTTTGCTTTGAGAAATTTTAGTTTTTTTGGTTGATTCCTAGAACCCCTTTTGATTTTGGTTTGTGGGGTTGCATAAAAATTGAATCTTGATGTTAAAAGATTGAATCTTGATTTCTGGGTGTGTTGGGTTTTGTGCTTTTGTCAAGTTGTTGTTGGTGTTTGAGCTGAATTGACAAGATTTTGTACAAAGGGATAGGTTGAAACAGGAAAAGATAGGGAATTTATCTCTTTGACTTTCCTAATATATGAGGTATTTTCTTTGATCTAGTAGGTCTATTCTTGAACTTTAACTTAGCTTTGTTAATTTCTGGTTCAATCTGATTACTTTGAATCTTGTGAATAACCTTTGTCANAGTATCGTTAGTTTCTGTGTTACTTTGATATTCANANATAGTACAGANCTTTGTTGNGCTAATCTTGTTCAATTGGNATAAGTTTAGAGCCTTTANATTATTANGTATTTGTGTATTGCTNGTCTTAACATTTTGCTGANC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602708" ref_strand="-" ref_description="SGN-U602708 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348445|emb|CAO23337.1| (e_value=8e-57) unnamed; (*ATH) AT5G04040.1 (e_value=4e-54) | Symbol: None | patatin-related, contains Patatin domain PF01734 | chr5:1089705-1093178 FORWARD | Aliases: F8F6.250, F8F6_250; ">
      <seq>catgaacctccctagatgcttgaaattgaccttgacttcaccctcatattgttatatggagtgctgtgactgcttncttgtgcnctttcntggtcctcttcgaangctcaagaacctgatggcaaaggatagaagtggagatcttgttccatatcatccaccatttcatttgggacctgatgacacttctggtgcatcttctcgccggtggagggatggtagcttggaggttgatttgccaatgatgcagctaaaggagctcttcaatgtcaatcacttcattgtgagccaggcgaatccacatatcgctcctctactgaggatcaaagagtttgtaagagcttatggaggcaactttgctgccaagcttgcccagcttgctgaaatggaggtgaagcacagatgccaccaggtgttagaacttggttttcccttgggaggaatagcaaagctttttgctcaagcattgggagggtgcacgtaactgttgtgatgcctgccatcctaggtacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="105449" stop="107423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105749" g_stop="106105" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106106" i_stop="106978" i_length="873">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106979" g_stop="107122" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="513" r_length="146" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U602708" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U602708" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="105749" e_stop="106105"/>
          <exon e_start="106979" e_stop="107122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAACCT-CCTAGATGCTTG-AATT-AC-TTGACTTCA-CCTCATATTGTTATATGGAGTGCTGTGACTGCTT-CTTGTGC-CTTTCCTGGT-CTCTTCGAA-GCTCAAGAAC-TGATGGCAAAGGATAGAAGTGGAGATCTTGTTCCATATCATCCACCATTTCATTTGGGACCTGATGACACTTCTGGTGCATCTTCTCGCCGGTGGAGGGATGGTAGCTTGGAGGTTGATTTGCCAATGATGCAGCTAAAGGAGCTCTTCAATGTCAATCACTTCATTGTGAGCCAGGCGAATCCACATATCGCTCCTCTACTGAGGATCAAAGAGTTTGTAAGAGCTTATGGAGGCAACTTTGCTGCCAAGGTATGTTCATATGGACTTCTATTGTCTTTATTATAGATGGTCTTGGTCTTTTTGCTTTCAGTTGATGTCCATGGTCGCTGTTAATGCATCATCTAACTCTTGTACATGTATTTGTCTCATTGCAACAGAAGTGTAGAGTACTTTGCTTTTGGTTGTTGTGATTATTGAGTTAGTTTCAAGTAATTATTCTGTATCTATAGGTAGATGTGTATACCATAGACTTCAACCATATGGTGATAAGGAGCTATTTGATTCCCTCATTTAACTTAAAGAATCTTCACTTGTTTGAACATTTAAAATAAGCTCTTTAGTTCAATCGAAGTCACTGAAGAGATTGATTTGAAGGAATCATATGCAGAATAATTTTTACAGTTAACATGCACCGCCAAGTAGCGGTGTGAACATCTCTATGGTATTTTCTCCTTTGTAGAAATAGGGTTCTTGTAAGTCACTGGTGATCAGTTTCTGAGCAACAATCTTTTGTTGGAAAATTTAATGAGCAGTTTGCAGCTCAAAGTGGTTTTGAATTATATAATCAAAGCAAGATTCACTTGTTGATATTCTTCTGCTATCCTTTTGGTGCTAGAGTAGCGGAATGAGTGTCAAACCTATAGAAAAATCCTGAATCTAATATAAATCTAGCCAACCAAATTGCCTTTATTCCGTTAGATCAACTGATCGCATCTTCACATGTATACTTGTTTTAGCTCTATGGTTTAGACCTCCAAATGTGTAGGCTCTATGTAGGCCTTGTTGGTTGTTGTTAACTCGTAACTAAGAATTGCTATTGCTAGTTCATGGCTCATATCCTTGCATGCTCCTAGCGTTGAATTTAAGCAGAACAATTGTAACATAAAGTATTTGGCCGTGCAGCTTGCCCAGCTTGCTGAAATGGAGGTGAAGCACAGATGCCACCAGGTGTTAGAACTTGGTTTTCCCTTGGGAGGAATAGCAAAGCTTTTTGCTCAAG-ATTGGGAGGGTG-ACGTAACTGTTGTGATGCCTGCCACTCTAGCTCAG</genome_strand>
        <mrna_strand>CATGAACCTCCCTAGATGCTTGAAATTGACCTTGACTTCACCCTCATATTGTTATATGGAGTGCTGTGACTGCTTNCTTGTGCNCTTTCNTGGTCCTCTTCGAANGCTCAAGAACCTGATGGCAAAGGATAGAAGTGGAGATCTTGTTCCATATCATCCACCATTTCATTTGGGACCTGATGACACTTCTGGTGCATCTTCTCGCCGGTGGAGGGATGGTAGCTTGGAGGTTGATTTGCCAATGATGCAGCTAAAGGAGCTCTTCAATGTCAATCACTTCATTGTGAGCCAGGCGAATCCACATATCGCTCCTCTACTGAGGATCAAAGAGTTTGTAAGAGCTTATGGAGGCAACTTTGCTGCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCCAGCTTGCTGAAATGGAGGTGAAGCACAGATGCCACCAGGTGTTAGAACTTGGTTTTCCCTTGGGAGGAATAGCAAAGCTTTTTGCTCAAGCATTGGGAGGGTGCACGTAACTGTTGTGATGCCTGCCATCCTAGGTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601375" ref_strand="+" ref_description="SGN-U601375 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348445|emb|CAO23337.1| (e_value=2e-86) unnamed; (*ATH) AT5G04040.1 (e_value=1e-65) | Symbol: None | patatin-related, contains Patatin domain PF01734 | chr5:1089705-1093178 FORWARD | Aliases: F8F6.250, F8F6_250; ">
      <seq>gctctactctggagctgcaaaaggcagcaaatcaaggaagacggtgcacttgggaaaaactctcagccattaaagctaactgtggaattgagcttgcacttgatgaatgtgttgctattctgaatcacatgcgtagactgaaaaggagtgccgagagagcggctgctgcttctcacggcttgtcaagcactgtcagatttaatgcttccagaagaattccttcttggaactgcattgcacgagagaattcaacaggttcccttgaagactttcttgcggatgttgctgcttcacatcatcaaggaggcagtggttccggcgcacataccaccagaaattggcgaacacaccggagcgcacatgatggcagtgacagcgagtccgaaaatgtggaccttaactcttggacaagatctggtggtcctctgatgaggacaacatctgctgataagtttatcgactttgtccagaacttggagattggttcacgattgaacaaaggattgactattgacctcaacaatctcgttcctcagatggctggtagagacctgttctccccgagcccaagggtatcaactccagatagaacttcagacaccgaatttgatcaaagagacttcagtattagagtccccgcgggtagttcaagcattatggtaggtgaaggtgaccttctacagccagaaaggactaacaacggtattgtcttcaacgtggtaagaaaaggagacgtaaccccatcgaatagaagcctcgattcagaaaataacagttctgtgcaggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="107015" stop="108402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107314" g_stop="108102" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U601375" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107314" e_stop="108102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATA</genome_strand>
        <mrna_strand>GCTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581708" ref_strand="+" ref_description="SGN-U581708 Tomato 200607#2 [25 ESTs aligned] (*GB) gi|157348444|emb|CAO23336.1| (e_value=6e-48) unnamed; (*ATH) AT3G10190.1 (e_value=8e-31) | Symbol: None | calmodulin, putative, similar to calmodulin NtCaM13 (Nicotiana tabacum) GI:14625425, calmodulin GB:AAA34015 (Glycine max); contains INTERPRO:IPR002048 calcium-binding EF-hand domain | chr3:3155303-3156145 FORWARD | Aliases: F14P13.21; (*SWP) sp|Q9SS31|CML36_ARATH (e_value=7e-30) Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36; ">
      <seq>cacgaggatcattttctctcactacgaagtttcctggaaattcaccatggctttctaccatttaatctccatcttcttcctctatctcatacactcatcttttcttgttttttcattctccatttcactttctcatcctccatagctatgaagctcctcaaaaacttccccaaaaagctcttcaactacaaaaaaactcgatcaatttccagatctcaaacctcatccttcggttcctcctccgattccgattcccttcctcatcgcggcttcagaaaaccaaccggatcatctactccaactagcgtcttaccgaacgaaatctctgctgcggaagtagtttacgctgagctaatccatgcgtttcacatgatggatactgacggcgacggtaagataaggaaggaagagctggaagcgattttaagcagagtcgggactgaaccaccgagtaaggaggaactcatgttgttgcttgaagaagttgatgttgacggagatggatgtattagtttacaggaattcggagctattagctcagcgtttggaccgccggcgtgtgattctgagctgagagatgcttttgatttcttcgatgccgatcacgacgggaagatcacggcggatgagctgtttagcgtgtttaggcagatcggagattcacggtgcacgttagaggagtgccggcgtatgataagaggtgtggataaaaatggtgatgggtttgtatgcttcgaggacttctgtattatgatggaacagcagcatagatgttgataagtaattggtgatcgtttgattctcctttcttttcttttttcaatttcggtgaaaaagtgtgtttgttttaagggtggggatttgattagaatctaatcaacggctaggattgatccattttggaggttgtaccaaagttattgatctcgtaaatacatgtgagaacaaattcctcccttttttacccctgaaaccgaaatggaattggcttatgcctaatatcaatatcaaacgtttccgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="110267" stop="111880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110559" g_stop="111578" g_length="1020"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1019" r_length="1019" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U581708" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1020</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110559" e_stop="111578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCAAATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</genome_strand>
        <mrna_strand>CACG-AGGATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602297" ref_strand="+" ref_description="SGN-U602297 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205226|gb|ABI34306.1| (e_value=6e-16) Polyprotein,; ">
      <seq>gcaacggtaaatccagacctatgaggaggaaatgcagtaatgtaagatcgtatttgacaaatggtaccattaatgttgagtatgtcaaatcttgtgataatcttgcagatcctcttacgaaggtcttaacaagagaaaaggtctggagcacatcgagggggataggattgaagcctacaaatccttcagtcatatatgaggaaactcaacctgnggaatagagatcctataaccaggttcaaagggaaaaactaatcatatgatgacttgttatgaaaaatacactattttttccctccctatgatgtgagtgcatttgttcctatagtttgtgaaggttgagttgataaaaactcttaatgaatatctgtaacccgtatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="122394" stop="121412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122095" g_stop="121712" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U602297" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122095" e_stop="121712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTACAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGAT-AAAACTCTTAATGAATATCTGTAGCCCGTATGGGT</genome_strand>
        <mrna_strand>GCAACGGTAAATCCAGACCTATGAGGAGGAAATGCAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGAGTATGTCAAATCTTGTGATAATCTTGCAGATCCTCTTACGAAGGTCTTAACAAGAGAAAAGGTCTGGAGCACATCGAGGGGGATAGGATTGAAGCCTACAAATCCTTCAGTCATATATGAGGAAACTCAACCTGNGGAATAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTATGAAAAATACACTA-TTTTTTCCCTCCCTATGATGTGAGTGCATTTGTTCCTATAGTTTGTGAAGGTTGAGTTGATAAAAACTCTTAATGAATATCTGTAACCCGTATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601553" ref_strand="+" ref_description="SGN-U601553 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348441|emb|CAO23333.1| (e_value=2e-85) unnamed; (*ATH) AT2G41370.1 (e_value=7e-86) | Symbol: None | ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain | chr2:17244823-17247518 REVERSE | Aliases: F13H10.8, F13H10_8; ">
      <seq>cacaggtagtaatacctgtgaactcggtagggtatgaggtttttttgttgatgttacaatttttgtatagtggacaagtttcaattgtgccacaaaaacatgaaccaaggcctaattgtggtgaaagaaactgttggcatacacattgcacatcagccgttgatcttgcacttgatacactctcagccgctagatcttttggtgttgaacaacttgctttgcttactcagaagcaattgacaagcatggtagagaaaacttcaattgaggatgtgatgaaagttttagttgcttcaagaaaacaagacatgcctcaactttggactacttgttctcatttggttgcaaaatcaggccttccacctgaaatcctagcaaaacaccttcccatcgacgttgtcgcgaaaatcgaggaaattcgcctaaaaacttcattagcgcgaagatccttgatctctcaccatcaccagcacgacctaagttcgacctcggagctcgaggaccaaaagatccgacgaatgagacgagccctagactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="+" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="133845" stop="135449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134145" g_stop="134374" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134375" i_stop="134841" i_length="467">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134842" g_stop="135149" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="538" r_length="308" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="+" ref_id="SGN-U601553" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U601553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134145" e_stop="134374"/>
          <exon e_start="134842" e_stop="135149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAGGTTTAATTTAACTTTATCGGATTGTTCCGACTCTTTGAAAATATTTGTCGAACACCATGTGGTTTCTAACGTGTTTTTAAAGCGTTCGAGCAATATTTAGTGAAATTCTTGTTGTTAGATGTGTCATTTCACTTGATTTCATGTTAAAGATTTTGAGTTTCTTGAGTCATATCTTTCAAGAGTGATTTATATATCCCCAATCAAATCCACTTTCCTAATTTGGTTTCATGAACCAATATTAAAAAATGGATTTATTTGATGTTACCCTATATATAATCAAGATTATGCAAAAAAAAAAAAACATATATCAATTGTCTTTTTGATTGGAATGATAAAACTTTCTAAATATGTCAATGTATATGAAAAACTAAATCACATTTAGGGACATTTGTGAGTCTTTGTTTTTTCATTTAATTTTGTTCGACTTGTTTGAGACTGAAGCATAGTTATTGTGTTTAATTCCGCAGAAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTCGAGGACCAAAAGATCCGACGAATGAGACGAGCCCTAGACTC</genome_strand>
        <mrna_strand>CACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTCGAGGACCAAAAGATCCGACGAATGAGACGAGCCCTAGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601131" ref_strand="+" ref_description="SGN-U601131 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157348441|emb|CAO23333.1| (e_value=1e-63) unnamed; (*ATH) AT2G41370.1 (e_value=6e-65) | Symbol: None | ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain | chr2:17244823-17247518 REVERSE | Aliases: F13H10.8, F13H10_8; (*SWP) sp|P93002|NPR1_ARATH (e_value=2e-14) Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1; ">
      <seq>ggctatggtaatttcacgagaggaagaaactcaagacatagacgtagtttgtttggttcgatatgagttagaccagggatcgcacctttgaataagaaatcggaagttagggtttgtagaatgtcgagtggagtgatcccatccatcgttctgacatttggatctgcgtggtggtctagtaggactgccaccatgtcgggtgacaccatttccgatgcaatgtggaggggggttttgccagctggaccggccgggtggttcacgttggctgcaccgagctcgagtaacgctttcacaacctcccggctacaattctcgaccgcgtagtgtaacgcgatcgattcatcgagatttagtccttctcccatgaccataagtttgaccaattccacgtcggatgagtctagggctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0206B16-mZbzK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0206B16.1" temp_strand="-" temp_description="C10HBa0206B16.1  AC238916.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0206B16 upload_account_name:manual">
        <position start="135826" stop="134836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135522" g_stop="135136" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="413" r_length="387" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0206B16.1" gen_strand="-" ref_id="SGN-U601131" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0206B16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135522" e_stop="135136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTAGGGCTCG</genome_strand>
        <mrna_strand>AAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTAGGGCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>34</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2642" PGL_stop="4108"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2642" e_stop="4108"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="2642" e_stop="4108" e_length="1467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="4108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2769" stop="3132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCGAAAAAAAAGCTTTGTTCTTCCATGGCGAAACTCACCAATCATGAAGTTGCCATAGTAATGATTCCACTACCAGCACAAGGCCATTTAAACCAACTCCTCCACCTCTCCCGCCTCATCTCCGCCTATAACCTCCCACTCCACTTCGCCGGAGCAGCCGTACACCTCCGTCAAGCAAAAAATCGTATCCATGGCTGGAACCCAGTCTCCACCTCCACCGTCAAATTCCACGAACTCCCAATCCCAAATTACGAAACCCCTCTTCCTAATCCAAATTCCACCACCAAATTCCCTTCCCAATTGATGCCGTCTTTCCACGCCACGATTCATCTTCGTCACCCGATTACTTCCCTTTTACAAGAACTCTCCAGAAATTACAGAAGAGTAATTGTTATTTACGATTCTTTAATAGCTTGGGTTCTTCAAGATACACCTTCTATACCAAACGTTGAGTGTTACAGCTTTCGTAGCATTTCAGTTTTTTCGATCTACTCTTGGGATAAATCCAGTGTAACGCCGGAGTTTACAGAGTATAGCAGAGTACAATTTGAGTTCAGAGAAATTGTTAATTCTGGTAATTTATACAATTCTTGCTATGAAATTGAAGGATTGTATCTTGATTTTGTAGCAAAAGAGAAAAGTGCGCGTAATAAACAATGGGCTATTGGACCATTAAACCCTGTGAAACAGTTTGATAAAAAAAATTCATTAATTTCGCATAAATGTATGAATTGGCTTGATGAACAAGAACCAAATTCTGTGATATTCGTGTCTTTCGGGACGACGACTACGTTTTCTGATGAACAAATTAAGGAATTAGCAATTGGGTTGGAGAAAAGTGAACAGAGATTTATATGGGTATTGAGGGAAGCTGATAAAGGTGACATTTTTACAGGGGAAAGTAGAGAAGTTGAGTTACCAGAAGGGTATGAAGAGAGAGTGGGGAAAAGAGGGGTTATAGTGAGAGATTGGGCACCACAATTGGAGATATTGGGACACGAGTCGACGGGTGGATTCATGAGCCATTGCGGGTGGAATTCGTGTATGGAGAGTATATCAATGGGAGTACCAATATTAGCTTGGCCAATGCATTCAGATCAACCAAGAAATGCAGTTTTGGTAACTGAAGTGTTGAAAATTGGAGTAGAGTTGAGGGATTGGGCAAAGAGAGATGAGTTGGTGAGTTCAGTTGCAGTTGCAGAATGTGTTAAGAGATTGATGGATTCTGCAGAAGGAGATGAGATGAGACAGAGGGTTATGGAGTTGAGTAAATCAGTGGTGGATGGTGGTGGCAGTGGCAGAGAGATGGCTTCTTTCATTGCCCATATTACGAGATAATAAAAGACGATTTTAACTAGATTTTATTCCTTTTAAACGATTGTAGTGAGTTTGTTGTGCCAACTTGAAGTGGCTATTGATGGGCTACATTTATAAAGAAGTTCAGTGTGTTACTATAATTCGACTCA</gDNA_template>
            <first_frame> S  E  K  K  A  L  F  F  H  G  E  T  H  Q  S  *  S  C  H  S  N  D  S  T  T  S  T  R  P  F  K  P  T  P  P  P  L  P  P  H  L  R  L  *  P  P  T  P  L  R  R  S  S  R  T  P  P  S  S  K  K  S  Y  P  W  L  E  P  S  L  H  L  H  R  Q  I  P  R  T  P  N  P  K  L  R  N  P  S  S  *  S  K  F  H  H  Q  I  P  F  P  I  D  A  V  F  P  R  H  D  S  S  S  S  P  D  Y  F  P  F  T  R  T  L  Q  K  L  Q  K  S  N  C  Y  L  R  F  F  N  S  L  G  S  S  R  Y  T  F  Y  T  K  R  *  V  L  Q  L  S  *  H  F  S  F  F  D  L  L  L  G  *  I  Q  C  N  A  G  V  Y  R  V  *  Q  S  T  I  *  V  Q  R  N  C  *  F  W  *  F  I  Q  F  L  L  *  N  *  R  I  V  S  *  F  C  S  K  R  E  K  C  A  *  *  T  M  G  Y  W  T  I  K  P  C  E  T  V  *  *  K  K  F  I  N  F  A  *  M  Y  E  L  A  *  *  T  R  T  K  F  C  D  I  R  V  F  R  D  D  D  Y  V  F  *  *  T  N  *  G  I  S  N  W  V  G  E  K  *  T  E  I  Y  M  G  I  E  G  S  *  *  R  *  H  F  Y  R  G  K  *  R  S  *  V  T  R  R  V  *  R  E  S  G  E  K  R  G  Y  S  E  R  L  G  T  T  I  G  D  I  G  T  R  V  D  G  W  I  H  E  P  L  R  V  E  F  V  Y  G  E  Y  I  N  G  S  T  N  I  S  L  A  N  A  F  R  S  T  K  K  C  S  F  G  N  *  S  V  E  N  W  S  R  V  E  G  L  G  K  E  R  *  V  G  E  F  S  C  S  C  R  M  C  *  E  I  D  G  F  C  R  R  R  *  D  E  T  E  G  Y  G  V  E  *  I  S  G  G  W  W  W  Q  W  Q  R  D  G  F  F  H  C  P  Y  Y  E  I  I  K  D  D  F  N  *  I  L  F  L  L  N  D  C  S  E  F  V  V  P  T  *  S  G  Y  *  W  A  T  F  I  K  K  F  S  V  L  L  *  F  D  S </first_frame>
            <second_frame>  P  K  K  K  L  C  S  S  M  A  K  L  T  N  H  E  V  A  I  V  M  I  P  L  P  A  Q  G  H  L  N  Q  L  L  H  L  S  R  L  I  S  A  Y  N  L  P  L  H  F  A  G  A  A  V  H  L  R  Q  A  K  N  R  I  H  G  W  N  P  V  S  T  S  T  V  K  F  H  E  L  P  I  P  N  Y  E  T  P  L  P  N  P  N  S  T  T  K  F  P  S  Q  L  M  P  S  F  H  A  T  I  H  L  R  H  P  I  T  S  L  L  Q  E  L  S  R  N  Y  R  R  V  I  V  I  Y  D  S  L  I  A  W  V  L  Q  D  T  P  S  I  P  N  V  E  C  Y  S  F  R  S  I  S  V  F  S  I  Y  S  W  D  K  S  S  V  T  P  E  F  T  E  Y  S  R  V  Q  F  E  F  R  E  I  V  N  S  G  N  L  Y  N  S  C  Y  E  I  E  G  L  Y  L  D  F  V  A  K  E  K  S  A  R  N  K  Q  W  A  I  G  P  L  N  P  V  K  Q  F  D  K  K  N  S  L  I  S  H  K  C  M  N  W  L  D  E  Q  E  P  N  S  V  I  F  V  S  F  G  T  T  T  T  F  S  D  E  Q  I  K  E  L  A  I  G  L  E  K  S  E  Q  R  F  I  W  V  L  R  E  A  D  K  G  D  I  F  T  G  E  S  R  E  V  E  L  P  E  G  Y  E  E  R  V  G  K  R  G  V  I  V  R  D  W  A  P  Q  L  E  I  L  G  H  E  S  T  G  G  F  M  S  H  C  G  W  N  S  C  M  E  S  I  S  M  G  V  P  I  L  A  W  P  M  H  S  D  Q  P  R  N  A  V  L  V  T  E  V  L  K  I  G  V  E  L  R  D  W  A  K  R  D  E  L  V  S  S  V  A  V  A  E  C  V  K  R  L  M  D  S  A  E  G  D  E  M  R  Q  R  V  M  E  L  S  K  S  V  V  D  G  G  G  S  G  R  E  M  A  S  F  I  A  H  I  T  R  *  *  K  T  I  L  T  R  F  Y  S  F  *  T  I  V  V  S  L  L  C  Q  L  E  V  A  I  D  G  L  H  L  *  R  S  S  V  C  Y  Y  N  S  T   </second_frame>
            <third_frame>   R  K  K  S  F  V  L  P  W  R  N  S  P  I  M  K  L  P  *  *  *  F  H  Y  Q  H  K  A  I  *  T  N  S  S  T  S  P  A  S  S  P  P  I  T  S  H  S  T  S  P  E  Q  P  Y  T  S  V  K  Q  K  I  V  S  M  A  G  T  Q  S  P  P  P  P  S  N  S  T  N  S  Q  S  Q  I  T  K  P  L  F  L  I  Q  I  P  P  P  N  S  L  P  N  *  C  R  L  S  T  P  R  F  I  F  V  T  R  L  L  P  F  Y  K  N  S  P  E  I  T  E  E  *  L  L  F  T  I  L  *  *  L  G  F  F  K  I  H  L  L  Y  Q  T  L  S  V  T  A  F  V  A  F  Q  F  F  R  S  T  L  G  I  N  P  V  *  R  R  S  L  Q  S  I  A  E  Y  N  L  S  S  E  K  L  L  I  L  V  I  Y  T  I  L  A  M  K  L  K  D  C  I  L  I  L  *  Q  K  R  K  V  R  V  I  N  N  G  L  L  D  H  *  T  L  *  N  S  L  I  K  K  I  H  *  F  R  I  N  V  *  I  G  L  M  N  K  N  Q  I  L  *  Y  S  C  L  S  G  R  R  L  R  F  L  M  N  K  L  R  N  *  Q  L  G  W  R  K  V  N  R  D  L  Y  G  Y  *  G  K  L  I  K  V  T  F  L  Q  G  K  V  E  K  L  S  Y  Q  K  G  M  K  R  E  W  G  K  E  G  L  *  *  E  I  G  H  H  N  W  R  Y  W  D  T  S  R  R  V  D  S  *  A  I  A  G  G  I  R  V  W  R  V  Y  Q  W  E  Y  Q  Y  *  L  G  Q  C  I  Q  I  N  Q  E  M  Q  F  W  *  L  K  C  *  K  L  E  *  S  *  G  I  G  Q  R  E  M  S  W  *  V  Q  L  Q  L  Q  N  V  L  R  D  *  W  I  L  Q  K  E  M  R  *  D  R  G  L  W  S  *  V  N  Q  W  W  M  V  V  A  V  A  E  R  W  L  L  S  L  P  I  L  R  D  N  K  R  R  F  *  L  D  F  I  P  F  K  R  L  *  *  V  C  C  A  N  L  K  W  L  L  M  G  Y  I  Y  K  E  V  Q  C  V  T  I  I  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2643" stop="3980"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1335</number_coding_nucleotides>
                  <number_encoded_amino_acids>445</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PKKKLCSSMAKLTNHEVAIVMIPLPAQGHLNQLLHLSRLISAYNLPLHFAGAAVHLRQAKNRIHGWNPVSTSTVKFHELPIPNYETPLPNPNSTTKFPSQLMPSFHATIHLRHPITSLLQELSRNYRRVIVIYDSLIAWVLQDTPSIPNVECYSFRSISVFSIYSWDKSSVTPEFTEYSRVQFEFREIVNSGNLYNSCYEIEGLYLDFVAKEKSARNKQWAIGPLNPVKQFDKKNSLISHKCMNWLDEQEPNSVIFVSFGTTTTFSDEQIKELAIGLEKSEQRFIWVLREADKGDIFTGESREVELPEGYEERVGKRGVIVRDWAPQLEILGHESTGGFMSHCGWNSCMESISMGVPILAWPMHSDQPRNAVLVTEVLKIGVELRDWAKRDELVSSVAVAECVKRLMDSAEGDEMRQRVMELSKSVVDGGGSGREMASFIAHITR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4773" PGL_stop="7437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4773" e_stop="5014"/>
            <exon e_start="5366" e_stop="5548"/>
            <exon e_start="6890" e_stop="7437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.823" acc_prob="0.741" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.872" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4773" e_stop="5014" e_length="242"/>
          </exon>
          <intron i_serial="1" don_prob="0.823" acc_prob="0.741">
            <gDNA_intron_boundary i_start="5015" i_stop="5365" i_length="351"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5366" e_stop="5548" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.872">
            <gDNA_intron_boundary i_start="5549" i_stop="6889" i_length="1341"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="6890" e_stop="7437" e_length="548"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4773" stop="5014"/>
              <exon start="5366" stop="5548"/>
              <exon start="6890" stop="7437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTCAGGAAATTTCCATGGCAGGCAGCCAAGCGAGTTTGGTTTCCAAATACGAACAAACACCAACAAGAAATTACGCCTAATTACAGTGCTCTCTAAACGTATTTGGATTTCTTCAGTTTGTTCTTCTCAGTGTTTCTTTTGGTGAGTTTGATTCAGAAAACTCGAAGGTTTTTTAAAGAATAGAGAAGGAAATAGATATGGGTATGCTCAGATAGCAGTTTTGGTGACCAATTTTTCACG : TCTGTGAATTTTCAAGTATCAAATGGCGCTGTGTTCTATTTACAAGTATGGTTCAAAAGCTCAAGGGTTGGCGTTTCTTGCATTTGGGTCCATTTCCTTTTTGGTATTTGTTTATGTTGCTATTGTCTCCAAGTTGCTTCCGCCATTCGACAATCCGATCCTTGCAGCCATTCAGAATGACAG : ATACTATTGCTTTCTGGTTCCATTAACGCTTCCCATCCTTGTTGTTGCTATATATTTCCACTGGCTCAGCATGAAGATCTTTAAGCATGCATAGCTCAGACGAGGTATGGAGCTTTTGTGTAATCTCACGAAGGATCGTCATCAATTGGTTAGGTTTCTGATTCCAAGTTGTTTACTTGAAACATTTGACATGAGTAGAATGAGATAAGTTTTCGTAGTAATGACAAACGAAGATACTTTCACTATTAAAGTGTAGTTATTTCAGCCCCTTTTGTGTTTCTGCATTTCCCGGAACTTCAGAAGTTAAGAGGACAAAATCGCGAGCTTCCTTCAAATAAATAATTTGCATAAATCAATACTTGCTTCTATCCAAGATTTTTGATGAAGGAACCGCTTATGAAGAAGACATTTAGGCTACTAAATCATCTTAGGACATTTAGACATTTTAAGTTTTTTTTTATCCTAATTCAACAGTTCAGTTGTTTGTAATTGGTATGAACACAGAATTTTGAAATTGACTTGCTTATATATATTGAAGTAATTGTAGG</gDNA_template>
            <first_frame> L  S  G  N  F  H  G  R  Q  P  S  E  F  G  F  Q  I  R  T  N  T  N  K  K  L  R  L  I  T  V  L  S  K  R  I  W  I  S  S  V  C  S  S  Q  C  F  F  W  *  V  *  F  R  K  L  E  G  F  L  K  N  R  E  G  N  R  Y  G  Y  A  Q  I  A  V  L  V  T  N  F  S  R :   L  *  I  F  K  Y  Q  M  A  L  C  S  I  Y  K  Y  G  S  K  A  Q  G  L  A  F  L  A  F  G  S  I  S  F  L  V  F  V  Y  V  A  I  V  S  K  L  L  P  P  F  D  N  P  I  L  A  A  I  Q  N  D  R :   Y  Y  C  F  L  V  P  L  T  L  P  I  L  V  V  A  I  Y  F  H  W  L  S  M  K  I  F  K  H  A  *  L  R  R  G  M  E  L  L  C  N  L  T  K  D  R  H  Q  L  V  R  F  L  I  P  S  C  L  L  E  T  F  D  M  S  R  M  R  *  V  F  V  V  M  T  N  E  D  T  F  T  I  K  V  *  L  F  Q  P  L  L  C  F  C  I  S  R  N  F  R  S  *  E  D  K  I  A  S  F  L  Q  I  N  N  L  H  K  S  I  L  A  S  I  Q  D  F  *  *  R  N  R  L  *  R  R  H  L  G  Y  *  I  I  L  G  H  L  D  I  L  S  F  F  L  S  *  F  N  S  S  V  V  C  N  W  Y  E  H  R  I  L  K  L  T  C  L  Y  I  L  K  *  L  *  </first_frame>
            <second_frame>  F  Q  E  I  S  M  A  G  S  Q  A  S  L  V  S  K  Y  E  Q  T  P  T  R  N  Y  A  *  L  Q  C  S  L  N  V  F  G  F  L  Q  F  V  L  L  S  V  S  F  G  E  F  D  S  E  N  S  K  V  F  *  R  I  E  K  E  I  D  M  G  M  L  R  *  Q  F  W  *  P  I  F  H   : V  C  E  F  S  S  I  K  W  R  C  V  L  F  T  S  M  V  Q  K  L  K  G  W  R  F  L  H  L  G  P  F  P  F  W  Y  L  F  M  L  L  L  S  P  S  C  F  R  H  S  T  I  R  S  L  Q  P  F  R  M  T   : D  T  I  A  F  W  F  H  *  R  F  P  S  L  L  L  L  Y  I  S  T  G  S  A  *  R  S  L  S  M  H  S  S  D  E  V  W  S  F  C  V  I  S  R  R  I  V  I  N  W  L  G  F  *  F  Q  V  V  Y  L  K  H  L  T  *  V  E  *  D  K  F  S  *  *  *  Q  T  K  I  L  S  L  L  K  C  S  Y  F  S  P  F  C  V  S  A  F  P  G  T  S  E  V  K  R  T  K  S  R  A  S  F  K  *  I  I  C  I  N  Q  Y  L  L  L  S  K  I  F  D  E  G  T  A  Y  E  E  D  I  *  A  T  K  S  S  *  D  I  *  T  F  *  V  F  F  Y  P  N  S  T  V  Q  L  F  V  I  G  M  N  T  E  F  *  N  *  L  A  Y  I  Y  *  S  N  C  R </second_frame>
            <third_frame>   F  R  K  F  P  W  Q  A  A  K  R  V  W  F  P  N  T  N  K  H  Q  Q  E  I  T  P  N  Y  S  A  L  *  T  Y  L  D  F  F  S  L  F  F  S  V  F  L  L  V  S  L  I  Q  K  T  R  R  F  F  K  E  *  R  R  K  *  I  W  V  C  S  D  S  S  F  G  D  Q  F  F  T  :  S  V  N  F  Q  V  S  N  G  A  V  F  Y  L  Q  V  W  F  K  S  S  R  V  G  V  S  C  I  W  V  H  F  L  F  G  I  C  L  C  C  Y  C  L  Q  V  A  S  A  I  R  Q  S  D  P  C  S  H  S  E  *  Q  :  I  L  L  L  S  G  S  I  N  A  S  H  P  C  C  C  Y  I  F  P  L  A  Q  H  E  D  L  *  A  C  I  A  Q  T  R  Y  G  A  F  V  *  S  H  E  G  S  S  S  I  G  *  V  S  D  S  K  L  F  T  *  N  I  *  H  E  *  N  E  I  S  F  R  S  N  D  K  R  R  Y  F  H  Y  *  S  V  V  I  S  A  P  F  V  F  L  H  F  P  E  L  Q  K  L  R  G  Q  N  R  E  L  P  S  N  K  *  F  A  *  I  N  T  C  F  Y  P  R  F  L  M  K  E  P  L  M  K  K  T  F  R  L  L  N  H  L  R  T  F  R  H  F  K  F  F  F  I  L  I  Q  Q  F  S  C  L  *  L  V  *  T  Q  N  F  E  I  D  L  L  I  Y  I  E  V  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5373" stop="5548"/>
                    <exon start="6890" stop="6983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFKYQMALCSIYKYGSKAQGLAFLAFGSISFLVFVYVAIVSKLLPPFDNPILAAIQNDRYYCFLVPLTLPILVVAIYFHWLSMKIFKHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4970" stop="5014"/>
                    <exon start="5366" stop="5545"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWVCSDSSFGDQFFTSVNFQVSNGAVFYLQVWFKSSRVGVSCIWVHFLFGICLCCYCLQVASAIRQSDPCSHSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5002" stop="5014"/>
                    <exon start="5366" stop="5548"/>
                    <exon start="6890" stop="6915"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIFHVCEFSSIKWRCVLFTSMVQKLKGWRFLHLGPFPFWYLFMLLLSPSCFRHSTIRSLQPFRMTDTIAFWFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="13097" PGL_stop="8282"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13097" e_stop="12367"/>
            <exon e_start="10158" e_stop="10055"/>
            <exon e_start="9807" e_stop="9579"/>
            <exon e_start="8732" e_stop="8282"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.973" e_score="0.967"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.990"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="13097" e_stop="12367" e_length="731"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.973">
            <gDNA_intron_boundary i_start="12366" i_stop="10159" i_length="2208"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="10158" e_stop="10055" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10054" i_stop="9808" i_length="247"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="9807" e_stop="9579" e_length="229"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="9578" i_stop="8733" i_length="846"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8732" e_stop="8282" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13097" stop="12367"/>
              <exon start="10158" stop="10055"/>
              <exon start="9807" stop="9579"/>
              <exon start="8732" stop="8282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTTGGGTCTTGTGGGGAAGAAAAAGGAAGAAGAGAGGCACACAAATAACACAATTGCTTCTCTTTCTTCCACTTACATACATTCCCCACAAAAAAGTTCCCAAACACACACACACACTGAAAATCAAATTTTTTTCAAGAAATAAATCTTGAAAATCTGTTGAGAAAAGGGTGGATTGATCAATTTCTGAGTTTTTTCTTGTAGTTTCAACAAAAGGGTACCTTAAAAATCGAATCTTTTTGCCATTTTTGATAAAATCAAGAATCAAAAAAAAATGTTGTCTGGACAATTAGAAAAGAAGGGTTTTTTCATAGCTACACTTATAACATTTTGGTATTCCTCAAATATTGGAGTTCTTCTTTTAAACAAATTATTGCTGTCAAATTATGGATTTAGATTCCCAATTTTTCTTACAATGTGTCATATGACAGCTTGTGCTGTTCTTAGCTATGTTTCTATTGTTTTCTTAAAGATTGCACCTTTTCAGAGGATTAAATCAAGGTCTCAATTTTTAAGAATTTCTACCCTTAGTGTTGTCTTTTGTGGTTCTGTTGTTGGTGGAAACATTTCTTTAAGGTACTTGCCTGTGTCGTTTAATCAGGCTGTGGGTGCAACAACACCCTTTTTTACTGCATTGTTTGCTTATTTGATGACAAGGAAGCAAGAAGCTTGGGCTACTTATGGTTGCCTTGTTCCTGTTGTTACTGGGGTTGTTATCGCAAGTGGG : GGTGAGCCAAGCTTCCACCTTTATGGATTTATCATGTGTATTGGTGCAACTGCTGCTAGAGCCTTCAAGTCTGTTCTTCAAGGAGTTCTTCTTTCTTCTGAAGG : GGAGAAGCTGAACTCCATGAATCTCCTGCTCTACATGTCACCAATTGCTGTCGTAGTGTTATTGCCTGCTGCACTCGTTATGGAGCCCAATGTTATCGATGTCACTGCAACACTCGCGACTGAACACAGATACCTTGGCCTGCTTATTGTGGTTAATTCCGCAATGGCCTATGGTGCCAATTTATTGAACTTTTTGGTGACTAAGCATACCAGTGCATTGACACTCCAG : GTCCTAGGCAATGCAAAAGGTGCAGTTGCTGTTGTTATCTCCATACTTATTTTCCAAAATCCAGTAACATTCATCGGAATCGCGGGCTACACAATGACTGTGATGGGAGTTGTTGCTTATGGAGAATCCAAAAGAAGGCACAAATAAGTTTTGACATCAATCGAAACCCCTTTTTTCTTGTTTTCATAAAGTACCAGACACTTGTGTTTCTTCAAAAGGTGTTAGCTGTGTTGTGGTAGAGTTAGGAAGAAATAGATTCCATTGCAATTCTGTAGCCCATAGACAGATGAAATGGTTAAAAGGGGTTGATTTCTTTTACCATTCTTCTGTTGTGTTCTTTCTATTAAGAGGGGATCTTTACATTTGTAACTATTTTTTTTGTGTGTTGTTACAATAAAGTCAAATAATGTCTTCTTCCTTCAAATGGTCCTTATATTATATGTTTACATTT</gDNA_template>
            <first_frame> K  I  W  V  L  W  G  R  K  R  K  K  R  G  T  Q  I  T  Q  L  L  L  F  L  P  L  T  Y  I  P  H  K  K  V  P  K  H  T  H  T  L  K  I  K  F  F  S  R  N  K  S  *  K  S  V  E  K  R  V  D  *  S  I  S  E  F  F  L  V  V  S  T  K  G  Y  L  K  N  R  I  F  L  P  F  L  I  K  S  R  I  K  K  K  C  C  L  D  N  *  K  R  R  V  F  S  *  L  H  L  *  H  F  G  I  P  Q  I  L  E  F  F  F  *  T  N  Y  C  C  Q  I  M  D  L  D  S  Q  F  F  L  Q  C  V  I  *  Q  L  V  L  F  L  A  M  F  L  L  F  S  *  R  L  H  L  F  R  G  L  N  Q  G  L  N  F  *  E  F  L  P  L  V  L  S  F  V  V  L  L  L  V  E  T  F  L  *  G  T  C  L  C  R  L  I  R  L  W  V  Q  Q  H  P  F  L  L  H  C  L  L  I  *  *  Q  G  S  K  K  L  G  L  L  M  V  A  L  F  L  L  L  L  G  L  L  S  Q  V  G :   V  S  Q  A  S  T  F  M  D  L  S  C  V  L  V  Q  L  L  L  E  P  S  S  L  F  F  K  E  F  F  F  L  L  K   : G  R  S  *  T  P  *  I  S  C  S  T  C  H  Q  L  L  S  *  C  Y  C  L  L  H  S  L  W  S  P  M  L  S  M  S  L  Q  H  S  R  L  N  T  D  T  L  A  C  L  L  W  L  I  P  Q  W  P  M  V  P  I  Y  *  T  F  W  *  L  S  I  P  V  H  *  H  S  R :   S  *  A  M  Q  K  V  Q  L  L  L  L  S  P  Y  L  F  S  K  I  Q  *  H  S  S  E  S  R  A  T  Q  *  L  *  W  E  L  L  L  M  E  N  P  K  E  G  T  N  K  F  *  H  Q  S  K  P  L  F  S  C  F  H  K  V  P  D  T  C  V  S  S  K  G  V  S  C  V  V  V  E  L  G  R  N  R  F  H  C  N  S  V  A  H  R  Q  M  K  W  L  K  G  V  D  F  F  Y  H  S  S  V  V  F  F  L  L  R  G  D  L  Y  I  C  N  Y  F  F  C  V  L  L  Q  *  S  Q  I  M  S  S  S  F  K  W  S  L  Y  Y  M  F  T  F </first_frame>
            <second_frame>  K  F  G  S  C  G  E  E  K  G  R  R  E  A  H  K  *  H  N  C  F  S  F  F  H  L  H  T  F  P  T  K  K  F  P  N  T  H  T  H  *  K  S  N  F  F  Q  E  I  N  L  E  N  L  L  R  K  G  W  I  D  Q  F  L  S  F  F  L  *  F  Q  Q  K  G  T  L  K  I  E  S  F  C  H  F  *  *  N  Q  E  S  K  K  N  V  V  W  T  I  R  K  E  G  F  F  H  S  Y  T  Y  N  I  L  V  F  L  K  Y  W  S  S  S  F  K  Q  I  I  A  V  K  L  W  I  *  I  P  N  F  S  Y  N  V  S  Y  D  S  L  C  C  S  *  L  C  F  Y  C  F  L  K  D  C  T  F  S  E  D  *  I  K  V  S  I  F  K  N  F  Y  P  *  C  C  L  L  W  F  C  C  W  W  K  H  F  F  K  V  L  A  C  V  V  *  S  G  C  G  C  N  N  T  L  F  Y  C  I  V  C  L  F  D  D  K  E  A  R  S  L  G  Y  L  W  L  P  C  S  C  C  Y  W  G  C  Y  R  K  W   : G  *  A  K  L  P  P  L  W  I  Y  H  V  Y  W  C  N  C  C  *  S  L  Q  V  C  S  S  R  S  S  S  F  F  *  R  :  G  E  A  E  L  H  E  S  P  A  L  H  V  T  N  C  C  R  S  V  I  A  C  C  T  R  Y  G  A  Q  C  Y  R  C  H  C  N  T  R  D  *  T  Q  I  P  W  P  A  Y  C  G  *  F  R  N  G  L  W  C  Q  F  I  E  L  F  G  D  *  A  Y  Q  C  I  D  T  P   : G  P  R  Q  C  K  R  C  S  C  C  C  Y  L  H  T  Y  F  P  K  S  S  N  I  H  R  N  R  G  L  H  N  D  C  D  G  S  C  C  L  W  R  I  Q  K  K  A  Q  I  S  F  D  I  N  R  N  P  F  F  L  V  F  I  K  Y  Q  T  L  V  F  L  Q  K  V  L  A  V  L  W  *  S  *  E  E  I  D  S  I  A  I  L  *  P  I  D  R  *  N  G  *  K  G  L  I  S  F  T  I  L  L  L  C  S  F  Y  *  E  G  I  F  T  F  V  T  I  F  F  V  C  C  Y  N  K  V  K  *  C  L  L  P  S  N  G  P  Y  I  I  C  L  H   </second_frame>
            <third_frame>   N  L  G  L  V  G  K  K  K  E  E  E  R  H  T  N  N  T  I  A  S  L  S  S  T  Y  I  H  S  P  Q  K  S  S  Q  T  H  T  H  T  E  N  Q  I  F  F  K  K  *  I  L  K  I  C  *  E  K  G  G  L  I  N  F  *  V  F  S  C  S  F  N  K  R  V  P  *  K  S  N  L  F  A  I  F  D  K  I  K  N  Q  K  K  M  L  S  G  Q  L  E  K  K  G  F  F  I  A  T  L  I  T  F  W  Y  S  S  N  I  G  V  L  L  L  N  K  L  L  L  S  N  Y  G  F  R  F  P  I  F  L  T  M  C  H  M  T  A  C  A  V  L  S  Y  V  S  I  V  F  L  K  I  A  P  F  Q  R  I  K  S  R  S  Q  F  L  R  I  S  T  L  S  V  V  F  C  G  S  V  V  G  G  N  I  S  L  R  Y  L  P  V  S  F  N  Q  A  V  G  A  T  T  P  F  F  T  A  L  F  A  Y  L  M  T  R  K  Q  E  A  W  A  T  Y  G  C  L  V  P  V  V  T  G  V  V  I  A  S  G  :  G  E  P  S  F  H  L  Y  G  F  I  M  C  I  G  A  T  A  A  R  A  F  K  S  V  L  Q  G  V  L  L  S  S  E  G :   E  K  L  N  S  M  N  L  L  L  Y  M  S  P  I  A  V  V  V  L  L  P  A  A  L  V  M  E  P  N  V  I  D  V  T  A  T  L  A  T  E  H  R  Y  L  G  L  L  I  V  V  N  S  A  M  A  Y  G  A  N  L  L  N  F  L  V  T  K  H  T  S  A  L  T  L  Q  :  V  L  G  N  A  K  G  A  V  A  V  V  I  S  I  L  I  F  Q  N  P  V  T  F  I  G  I  A  G  Y  T  M  T  V  M  G  V  V  A  Y  G  E  S  K  R  R  H  K  *  V  L  T  S  I  E  T  P  F  F  L  F  S  *  S  T  R  H  L  C  F  F  K  R  C  *  L  C  C  G  R  V  R  K  K  *  I  P  L  Q  F  C  S  P  *  T  D  E  M  V  K  R  G  *  F  L  L  P  F  F  C  C  V  L  S  I  K  R  G  S  L  H  L  *  L  F  F  L  C  V  V  T  I  K  S  N  N  V  F  F  L  Q  M  V  L  I  L  Y  V  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12867" stop="12367"/>
                    <exon start="10158" stop="10055"/>
                    <exon start="9807" stop="9579"/>
                    <exon start="8732" stop="8586"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSNLFAIFDKIKNQKKMLSGQLEKKGFFIATLITFWYSSNIGVLLLNKLLLSNYGFRFPIFLTMCHMTACAVLSYVSIVFLKIAPFQRIKSRSQFLRISTLSVVFCGSVVGGNISLRYLPVSFNQAVGATTPFFTALFAYLMTRKQEAWATYGCLVPVVTGVVIASGGEPSFHLYGFIMCIGATAARAFKSVLQGVLLSSEGEKLNSMNLLLYMSPIAVVVLLPAALVMEPNVIDVTATLATEHRYLGLLIVVNSAMAYGANLLNFLVTKHTSALTLQVLGNAKGAVAVVISILIFQNPVTFIGIAGYTMTVMGVVAYGESKRRHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8578" stop="8336"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HQSKPLFSCFHKVPDTCVSSKGVSCVVVELGRNRFHCNSVAHRQMKWLKGVDFFYHSSVVFFLLRGDLYICNYFFCVLLQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13294" PGL_stop="14037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13294" e_stop="14037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="13294" e_stop="14037" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13294" stop="14037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTGTGGTGATTCACATATTTTCTGTGGTGAACTTCCATGTTATTGAACTGAATGTTTGTTGGATCATGCAATTATAAAATTTGGAGATAGTAATTTTTTTTAATGGAGAAAGGATTAGTGGTGTATGATTCGAATTTTGATGGATAATGGATTGTTATATATTTATTTGTTTAAATGTCATATTAATTTGTTTGTATGATGTGCATCTAACTTACATGTCATGTTATTTTACGTTTTTACTGTCGAAGGCAATATAGGAGATAAATTTATCAATAGAGAGTTTTGATAATACCTTGGTATTCAAACATTATAATTTGTTAGTAATTTATGAATTTTGTTTTCTTATTTTTTTCCATTTGTAGAAGTTTGCTCATATCAATTGAAATGTTTGAGCTTATGATATTTATAGTATATGGTAAAAAGAATACATCAATTATCCTTTTTTTTATGAGTTCTGTCCCATAATTATGTATTTGTTTCATTTATCTATCTAATTATTATATTTTTTGTGAGTTTATATTTTGACTATTTATTGTTTTATTTACGTACTTAAGCTAGCACTCTCTTTGTTAGACATATCTCGATGACGACTTGGCCAATATATATGGTTGTTATAAATTGAGAAGAATATTTGATCAACTCACCATCAAGATATTATGATTTAATACCGAGGAAGTAATGATTTAAATAGATATAAGAAATAATGAATAGTTAAAGTATGAAATTCGTGAAAAAAAAATAA</gDNA_template>
            <first_frame> *  C  G  D  S  H  I  F  C  G  E  L  P  C  Y  *  T  E  C  L  L  D  H  A  I  I  K  F  G  D  S  N  F  F  *  W  R  K  D  *  W  C  M  I  R  I  L  M  D  N  G  L  L  Y  I  Y  L  F  K  C  H  I  N  L  F  V  *  C  A  S  N  L  H  V  M  L  F  Y  V  F  T  V  E  G  N  I  G  D  K  F  I  N  R  E  F  *  *  Y  L  G  I  Q  T  L  *  F  V  S  N  L  *  I  L  F  S  Y  F  F  P  F  V  E  V  C  S  Y  Q  L  K  C  L  S  L  *  Y  L  *  Y  M  V  K  R  I  H  Q  L  S  F  F  L  *  V  L  S  H  N  Y  V  F  V  S  F  I  Y  L  I  I  I  F  F  V  S  L  Y  F  D  Y  L  L  F  Y  L  R  T  *  A  S  T  L  F  V  R  H  I  S  M  T  T  W  P  I  Y  M  V  V  I  N  *  E  E  Y  L  I  N  S  P  S  R  Y  Y  D  L  I  P  R  K  *  *  F  K  *  I  *  E  I  M  N  S  *  S  M  K  F  V  K  K  K  * </first_frame>
            <second_frame>  S  V  V  I  H  I  F  S  V  V  N  F  H  V  I  E  L  N  V  C  W  I  M  Q  L  *  N  L  E  I  V  I  F  F  N  G  E  R  I  S  G  V  *  F  E  F  *  W  I  M  D  C  Y  I  F  I  C  L  N  V  I  L  I  C  L  Y  D  V  H  L  T  Y  M  S  C  Y  F  T  F  L  L  S  K  A  I  *  E  I  N  L  S  I  E  S  F  D  N  T  L  V  F  K  H  Y  N  L  L  V  I  Y  E  F  C  F  L  I  F  F  H  L  *  K  F  A  H  I  N  *  N  V  *  A  Y  D  I  Y  S  I  W  *  K  E  Y  I  N  Y  P  F  F  Y  E  F  C  P  I  I  M  Y  L  F  H  L  S  I  *  L  L  Y  F  L  *  V  Y  I  L  T  I  Y  C  F  I  Y  V  L  K  L  A  L  S  L  L  D  I  S  R  *  R  L  G  Q  Y  I  W  L  L  *  I  E  K  N  I  *  S  T  H  H  Q  D  I  M  I  *  Y  R  G  S  N  D  L  N  R  Y  K  K  *  *  I  V  K  V  *  N  S  *  K  K  N   </second_frame>
            <third_frame>   V  W  *  F  T  Y  F  L  W  *  T  S  M  L  L  N  *  M  F  V  G  S  C  N  Y  K  I  W  R  *  *  F  F  L  M  E  K  G  L  V  V  Y  D  S  N  F  D  G  *  W  I  V  I  Y  L  F  V  *  M  S  Y  *  F  V  C  M  M  C  I  *  L  T  C  H  V  I  L  R  F  Y  C  R  R  Q  Y  R  R  *  I  Y  Q  *  R  V  L  I  I  P  W  Y  S  N  I  I  I  C  *  *  F  M  N  F  V  F  L  F  F  S  I  C  R  S  L  L  I  S  I  E  M  F  E  L  M  I  F  I  V  Y  G  K  K  N  T  S  I  I  L  F  F  M  S  S  V  P  *  L  C  I  C  F  I  Y  L  S  N  Y  Y  I  F  C  E  F  I  F  *  L  F  I  V  L  F  T  Y  L  S  *  H  S  L  C  *  T  Y  L  D  D  D  L  A  N  I  Y  G  C  Y  K  L  R  R  I  F  D  Q  L  T  I  K  I  L  *  F  N  T  E  E  V  M  I  *  I  D  I  R  N  N  E  *  L  K  Y  E  I  R  E  K  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="24402" PGL_stop="22614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24402" e_stop="24338"/>
            <exon e_start="22892" e_stop="22614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.992" e_score="0.954"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="24402" e_stop="24338" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.992">
            <gDNA_intron_boundary i_start="24337" i_stop="22893" i_length="1445"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22892" e_stop="22614" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24402" stop="24338"/>
              <exon start="22892" stop="22614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604673" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTGAGATCATCTATCATGGGATATTAGAGGGGAATAATATCCTTAAGGGTACATTGTGCATTCA : GAAAATGTAGTTTTGAGCATTGATGATGATAATGAAGTTGAGCTACAAAATGCAGTGAAAAATGCATCAGGCAATCTGTTTCGATTTGATGCACATGTAACCGAGTACACCAGCTATGTCGATATTGCCACTATGTCCTGTTCTGCAGGGAGCTGAGAGTGAATGGATCTAGCTTGGACGAGCTCCGACTTTGTTTTCCTGTACTAAAGAAACTGGTAAAACATTCCTAAACATATTTCATATAATAAGCTGCAATAAAAAGAATAGACAATTGCTATC</gDNA_template>
            <first_frame> I  E  I  I  Y  H  G  I  L  E  G  N  N  I  L  K  G  T  L  C  I  Q :   K  M  *  F  *  A  L  M  M  I  M  K  L  S  Y  K  M  Q  *  K  M  H  Q  A  I  C  F  D  L  M  H  M  *  P  S  T  P  A  M  S  I  L  P  L  C  P  V  L  Q  G  A  E  S  E  W  I  *  L  G  R  A  P  T  L  F  S  C  T  K  E  T  G  K  T  F  L  N  I  F  H  I  I  S  C  N  K  K  N  R  Q  L  L   </first_frame>
            <second_frame>  L  R  S  S  I  M  G  Y  *  R  G  I  I  S  L  R  V  H  C  A  F   : R  K  C  S  F  E  H  *  *  *  *  *  S  *  A  T  K  C  S  E  K  C  I  R  Q  S  V  S  I  *  C  T  C  N  R  V  H  Q  L  C  R  Y  C  H  Y  V  L  F  C  R  E  L  R  V  N  G  S  S  L  D  E  L  R  L  C  F  P  V  L  K  K  L  V  K  H  S  *  T  Y  F  I  *  *  A  A  I  K  R  I  D  N  C  Y  </second_frame>
            <third_frame>   *  D  H  L  S  W  D  I  R  G  E  *  Y  P  *  G  Y  I  V  H  S  :  E  N  V  V  L  S  I  D  D  D  N  E  V  E  L  Q  N  A  V  K  N  A  S  G  N  L  F  R  F  D  A  H  V  T  E  Y  T  S  Y  V  D  I  A  T  M  S  C  S  A  G  S  *  E  *  M  D  L  A  W  T  S  S  D  F  V  F  L  Y  *  R  N  W  *  N  I  P  K  H  I  S  Y  N  K  L  Q  *  K  E  *  T  I  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="25314" PGL_stop="28330"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25314" e_stop="26043"/>
            <exon e_start="27367" e_stop="27413"/>
            <exon e_start="27529" e_stop="27704"/>
            <exon e_start="27811" e_stop="27829"/>
            <exon e_start="27929" e_stop="28330"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.939" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.959" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="25314" e_stop="26043" e_length="730"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.939">
            <gDNA_intron_boundary i_start="26044" i_stop="27366" i_length="1323"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27367" e_stop="27413" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27414" i_stop="27528" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27529" e_stop="27704" e_length="176"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.980">
            <gDNA_intron_boundary i_start="27705" i_stop="27810" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27811" e_stop="27829" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.959" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27830" i_stop="27928" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27929" e_stop="28330" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25314" stop="26043"/>
              <exon start="27367" stop="27413"/>
              <exon start="27529" stop="27704"/>
              <exon start="27811" stop="27829"/>
              <exon start="27929" stop="28330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572289" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCTAATTTACAGAAATTTATCTTTTTAATTTTCTCTCTCTAGCTTTTCAAAAATGTCCGGTTACCCGCACAATGTTCCCGGCTACGGTTACGGCCAGCCACCGTCATCTCAGCCGTACTCCTCCACCCCATACGGTGCTCCACCGCCGTCTTCAGCTTCACCTTACGGTGCTCCACCACCGTCTTCAGCATCACCCTACGGTGCTTCACCATCACCTTACGGTGCTCCACCATCACCCTACGGTGCTCCACCTCCTCAATCTCACTCCCCTTACGCTCCCGTTCCGTCTCCCTACGGCGCCGGAGCACCGTCTTACGGTGATCCGCATAAACCCCCAAAAGAGAATAAACCACAGTCTTCATCCCCTTACGGTGGGGCAGGGGCTGGGTACCCTGCTCCACCTCCTTCGGCTCCGTACGGTGATCCGAACAAACCACCGAAGGATAGCCACTCACAACCGTCTGCTCCTTATGGTGGATACCACGCGCCACCTCCTGCTGGGCCTTATGGAGCTAGTAGCCCTTTTGCATCTCTTGTGCCGTCTGCTTTTCCACCGGGTACCGATCCGAATATTGTAGCTTGTTTCCAGCTCGCGGATCAGGATGGGAGTGGGTTAATTGATGATAAGGAGCTGCAGAAGGCGCTTTCTTCGTATAATCAGAGCTTCAGCTTGAGGACTGTTCATCTGCTTATGTATCTCTTCACCAATACCAACACTAGAAAAATCG : GTCCCAAAGAATTCACTTCAGTGTTCTACAGTCTCCAAGAATGGAGG : GGAATTTTCGAGAGATTTGATAGGGATAGGAGTGGAAAAATTGATTCATCTGAATTGAGGGACGCGTTACTTAGCCTGGGATATGCTGTATCACCTTCTATCCTGGAATTGCTGGTCTCCAAGTTTGATAAAACTGGTGGAAAGAGTAGAGCCATTGAATATGATAACTTCATTGA : GTGCTGCCTCACCGTTAAA : GGGCTAACTGAGAAGTTCAAGGAGAAGGATACTTCATATTCTGGCTCTGCTACGTTCACTTATGAGTCGTTCATGCTAACAGTTTTGCCTTTCCTGATTGCTTAGAGACGAGGCATATGAATTTCACAATTACGGGTGGTCTTACTATGATTTACCAGCTTCGTTTTCGTTTGTTTTCAGTAGAGAGATGTTTGCTTCTGTTAGTTTTTGTAAACAGTTTCCAGGGTGAAGTTGAATTACTTGCTTGTAGAAGTCTAGTGTGTTGTAGAGCAGTTAATGGGCTATCAAAACTAAATCCTTTGTGTTTCTTTTGATGTGTTTACTATTCGATCATGACTACTTTAAAGAGTATTTGGTTCGGCTTATTTTAGAAAATAAAATATAAACAAATCTATTTCAAGG</gDNA_template>
            <first_frame> F  L  I  Y  R  N  L  S  F  *  F  S  L  S  S  F  S  K  M  S  G  Y  P  H  N  V  P  G  Y  G  Y  G  Q  P  P  S  S  Q  P  Y  S  S  T  P  Y  G  A  P  P  P  S  S  A  S  P  Y  G  A  P  P  P  S  S  A  S  P  Y  G  A  S  P  S  P  Y  G  A  P  P  S  P  Y  G  A  P  P  P  Q  S  H  S  P  Y  A  P  V  P  S  P  Y  G  A  G  A  P  S  Y  G  D  P  H  K  P  P  K  E  N  K  P  Q  S  S  S  P  Y  G  G  A  G  A  G  Y  P  A  P  P  P  S  A  P  Y  G  D  P  N  K  P  P  K  D  S  H  S  Q  P  S  A  P  Y  G  G  Y  H  A  P  P  P  A  G  P  Y  G  A  S  S  P  F  A  S  L  V  P  S  A  F  P  P  G  T  D  P  N  I  V  A  C  F  Q  L  A  D  Q  D  G  S  G  L  I  D  D  K  E  L  Q  K  A  L  S  S  Y  N  Q  S  F  S  L  R  T  V  H  L  L  M  Y  L  F  T  N  T  N  T  R  K  I   : G  P  K  E  F  T  S  V  F  Y  S  L  Q  E  W  R  :  G  I  F  E  R  F  D  R  D  R  S  G  K  I  D  S  S  E  L  R  D  A  L  L  S  L  G  Y  A  V  S  P  S  I  L  E  L  L  V  S  K  F  D  K  T  G  G  K  S  R  A  I  E  Y  D  N  F  I  E :   C  C  L  T  V  K  :  G  L  T  E  K  F  K  E  K  D  T  S  Y  S  G  S  A  T  F  T  Y  E  S  F  M  L  T  V  L  P  F  L  I  A  *  R  R  G  I  *  I  S  Q  L  R  V  V  L  L  *  F  T  S  F  V  F  V  C  F  Q  *  R  D  V  C  F  C  *  F  L  *  T  V  S  R  V  K  L  N  Y  L  L  V  E  V  *  C  V  V  E  Q  L  M  G  Y  Q  N  *  I  L  C  V  S  F  D  V  F  T  I  R  S  *  L  L  *  R  V  F  G  S  A  Y  F  R  K  *  N  I  N  K  S  I  S  R </first_frame>
            <second_frame>  F  *  F  T  E  I  Y  L  F  N  F  L  S  L  A  F  Q  K  C  P  V  T  R  T  M  F  P  A  T  V  T  A  S  H  R  H  L  S  R  T  P  P  P  H  T  V  L  H  R  R  L  Q  L  H  L  T  V  L  H  H  R  L  Q  H  H  P  T  V  L  H  H  H  L  T  V  L  H  H  H  P  T  V  L  H  L  L  N  L  T  P  L  T  L  P  F  R  L  P  T  A  P  E  H  R  L  T  V  I  R  I  N  P  Q  K  R  I  N  H  S  L  H  P  L  T  V  G  Q  G  L  G  T  L  L  H  L  L  R  L  R  T  V  I  R  T  N  H  R  R  I  A  T  H  N  R  L  L  L  M  V  D  T  T  R  H  L  L  L  G  L  M  E  L  V  A  L  L  H  L  L  C  R  L  L  F  H  R  V  P  I  R  I  L  *  L  V  S  S  S  R  I  R  M  G  V  G  *  L  M  I  R  S  C  R  R  R  F  L  R  I  I  R  A  S  A  *  G  L  F  I  C  L  C  I  S  S  P  I  P  T  L  E  K  S  :  V  P  K  N  S  L  Q  C  S  T  V  S  K  N  G  G :   E  F  S  R  D  L  I  G  I  G  V  E  K  L  I  H  L  N  *  G  T  R  Y  L  A  W  D  M  L  Y  H  L  L  S  W  N  C  W  S  P  S  L  I  K  L  V  E  R  V  E  P  L  N  M  I  T  S  L   : S  A  A  S  P  L  K :   G  *  L  R  S  S  R  R  R  I  L  H  I  L  A  L  L  R  S  L  M  S  R  S  C  *  Q  F  C  L  S  *  L  L  R  D  E  A  Y  E  F  H  N  Y  G  W  S  Y  Y  D  L  P  A  S  F  S  F  V  F  S  R  E  M  F  A  S  V  S  F  C  K  Q  F  P  G  *  S  *  I  T  C  L  *  K  S  S  V  L  *  S  S  *  W  A  I  K  T  K  S  F  V  F  L  L  M  C  L  L  F  D  H  D  Y  F  K  E  Y  L  V  R  L  I  L  E  N  K  I  *  T  N  L  F  Q   </second_frame>
            <third_frame>   S  N  L  Q  K  F  I  F  L  I  F  S  L  *  L  F  K  N  V  R  L  P  A  Q  C  S  R  L  R  L  R  P  A  T  V  I  S  A  V  L  L  H  P  I  R  C  S  T  A  V  F  S  F  T  L  R  C  S  T  T  V  F  S  I  T  L  R  C  F  T  I  T  L  R  C  S  T  I  T  L  R  C  S  T  S  S  I  S  L  P  L  R  S  R  S  V  S  L  R  R  R  S  T  V  L  R  *  S  A  *  T  P  K  R  E  *  T  T  V  F  I  P  L  R  W  G  R  G  W  V  P  C  S  T  S  F  G  S  V  R  *  S  E  Q  T  T  E  G  *  P  L  T  T  V  C  S  L  W  W  I  P  R  A  T  S  C  W  A  L  W  S  *  *  P  F  C  I  S  C  A  V  C  F  S  T  G  Y  R  S  E  Y  C  S  L  F  P  A  R  G  S  G  W  E  W  V  N  *  *  *  G  A  A  E  G  A  F  F  V  *  S  E  L  Q  L  E  D  C  S  S  A  Y  V  S  L  H  Q  Y  Q  H  *  K  N  R :   S  Q  R  I  H  F  S  V  L  Q  S  P  R  M  E   : G  N  F  R  E  I  *  *  G  *  E  W  K  N  *  F  I  *  I  E  G  R  V  T  *  P  G  I  C  C  I  T  F  Y  P  G  I  A  G  L  Q  V  *  *  N  W  W  K  E  *  S  H  *  I  *  *  L  H  *  :  V  L  P  H  R  *   : R  A  N  *  E  V  Q  G  E  G  Y  F  I  F  W  L  C  Y  V  H  L  *  V  V  H  A  N  S  F  A  F  P  D  C  L  E  T  R  H  M  N  F  T  I  T  G  G  L  T  M  I  Y  Q  L  R  F  R  L  F  S  V  E  R  C  L  L  L  L  V  F  V  N  S  F  Q  G  E  V  E  L  L  A  C  R  S  L  V  C  C  R  A  V  N  G  L  S  K  L  N  P  L  C  F  F  *  C  V  Y  Y  S  I  M  T  T  L  K  S  I  W  F  G  L  F  *  K  I  K  Y  K  Q  I  Y  F  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25344" stop="26043"/>
                    <exon start="27367" stop="27413"/>
                    <exon start="27529" stop="27704"/>
                    <exon start="27811" stop="27829"/>
                    <exon start="27929" stop="28033"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLSSFSKMSGYPHNVPGYGYGQPPSSQPYSSTPYGAPPPSSASPYGAPPPSSASPYGASPSPYGAPPSPYGAPPPQSHSPYAPVPSPYGAGAPSYGDPHKPPKENKPQSSSPYGGAGAGYPAPPPSAPYGDPNKPPKDSHSQPSAPYGGYHAPPPAGPYGASSPFASLVPSAFPPGTDPNIVACFQLADQDGSGLIDDKELQKALSSYNQSFSLRTVHLLMYLFTNTNTRKIGPKEFTSVFYSLQEWRGIFERFDRDRSGKIDSSELRDALLSLGYAVSPSILELLVSKFDKTGGKSRAIEYDNFIECCLTVKGLTEKFKEKDTSYSGSATFTYESFMLTVLPFLIA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29381" PGL_stop="33455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29381" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31588"/>
            <exon e_start="32047" e_stop="32266"/>
            <exon e_start="32585" e_stop="32727"/>
            <exon e_start="32910" e_stop="33047"/>
            <exon e_start="33141" e_stop="33455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.997"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.819" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="29381" e_stop="29729" e_length="349"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31467" e_stop="31588" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.819">
            <gDNA_intron_boundary i_start="31589" i_stop="32046" i_length="458"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32047" e_stop="32266" e_length="220"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.819">
            <gDNA_intron_boundary i_start="32267" i_stop="32584" i_length="318"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32585" e_stop="32727" e_length="143"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="32910" e_stop="33047" e_length="138"/>
          </exon>
          <intron i_serial="7" don_prob="0.963" acc_prob="0.888">
            <gDNA_intron_boundary i_start="33048" i_stop="33140" i_length="93"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="33141" e_stop="33455" e_length="315"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29381" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31588"/>
              <exon start="32047" stop="32266"/>
              <exon start="32585" stop="32727"/>
              <exon start="32910" stop="33047"/>
              <exon start="33141" stop="33455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585102" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATTTATTCCTTACAGCAAAAAAGACGAAACCCTAGAAATCTTTCTTCTACCGATCCACTTCTCATCTTTTCAGTTTCTCTGGTTCTGCACGGCGGCGAGTTTTGTGGTTGCTATCTCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGCATTGGAGTCTATTCATCTTCTTCAACCATGACAATGGCAGGACACTGATCATTGACCTGTTTAACCAGGACAA : ATACTTGAATGCCATTCAAACAAGTGCTCCCCACTTGCTGCGGTACTTGGCTATTGCATTTATTGTCAACAAAAGAAGAAGACCTCAATTTAAGGACTTTATAAAGGTTATTCAGCAGGAGCAACACTCTTGTAAAGATCCCATCACAGAGTTTTTGGCATGTATTTACGTCGACTATGATTTTGATGGGGCACAGGAGAAGATGAAGGAGTGCGAAGAG : CTAATATTGAATGACCCATTCCTTGGAAAAAGAGCTGAAGAGGGCAGTTTCTCCTCTGTGCCATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGCTTGATGCCAAGATAGACACTGAAACCGGGACAGTTACAATGGAACCAAATCAGCCTAATGT : GTACGAGCAGCTCATCGATCACACCAAGCCCCTTTCTGGACGCACGTACAAATTAGTCAGTCAGCTTCTTGAACATGCACAAACACAACTTGCTAGATAGTTTGGTTGAGGACATTAAGCTCGTGCCAATTTTGCATTGCTCCCGTACCTGATTAACACCTTTATATTCAAGAATGTTGCTTATGTTAATTCCTGGATTTCCCTTGGAGGAAATTTTGAGATACATGATGAATTATACATTAGTTTCTTTTTTATCTTGTGTTGTCTCCATTGGAAGTGGTATGCCTTTGCATTTTAGTACTCGTTTTTGCCATG</gDNA_template>
            <first_frame> I  I  Y  S  L  Q  Q  K  R  R  N  P  R  N  L  S  S  T  D  P  L  L  I  F  S  V  S  L  V  L  H  G  G  E  F  C  G  C  Y  L  L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M  H  W  S  L  F  I  F  F  N  H  D  N  G  R  T  L  I  I  D  L  F  N  Q  D  K :   Y  L  N  A  I  Q  T  S  A  P  H  L  L  R  Y  L  A  I  A  F  I  V  N  K  R  R  R  P  Q  F  K  D  F  I  K  V  I  Q  Q  E  Q  H  S  C  K  D  P  I  T  E  F  L  A  C  I  Y  V  D  Y  D  F  D  G  A  Q  E  K  M  K  E  C  E  E  :  L  I  L  N  D  P  F  L  G  K  R  A  E  E  G  S  F  S  S  V  P  L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  L  D  A  K  I  D  T  E  T  G  T  V  T  M  E  P  N  Q  P  N  V :   Y  E  Q  L  I  D  H  T  K  P  L  S  G  R  T  Y  K  L  V  S  Q  L  L  E  H  A  Q  T  Q  L  A  R  *  F  G  *  G  H  *  A  R  A  N  F  A  L  L  P  Y  L  I  N  T  F  I  F  K  N  V  A  Y  V  N  S  W  I  S  L  G  G  N  F  E  I  H  D  E  L  Y  I  S  F  F  F  I  L  C  C  L  H  W  K  W  Y  A  F  A  F  *  Y  S  F  L  P   </first_frame>
            <second_frame>  L  F  I  P  Y  S  K  K  D  E  T  L  E  I  F  L  L  P  I  H  F  S  S  F  Q  F  L  W  F  C  T  A  A  S  F  V  V  A  I  S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  I  G  V  Y  S  S  S  S  T  M  T  M  A  G  H  *  S  L  T  C  L  T  R  T   : N  T  *  M  P  F  K  Q  V  L  P  T  C  C  G  T  W  L  L  H  L  L  S  T  K  E  E  D  L  N  L  R  T  L  *  R  L  F  S  R  S  N  T  L  V  K  I  P  S  Q  S  F  W  H  V  F  T  S  T  M  I  L  M  G  H  R  R  R  *  R  S  A  K  S :   *  Y  *  M  T  H  S  L  E  K  E  L  K  R  A  V  S  P  L  C  H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S  L  M  P  R  *  T  L  K  P  G  Q  L  Q  W  N  Q  I  S  L  M   : C  T  S  S  S  S  I  T  P  S  P  F  L  D  A  R  T  N  *  S  V  S  F  L  N  M  H  K  H  N  L  L  D  S  L  V  E  D  I  K  L  V  P  I  L  H  C  S  R  T  *  L  T  P  L  Y  S  R  M  L  L  M  L  I  P  G  F  P  L  E  E  I  L  R  Y  M  M  N  Y  T  L  V  S  F  L  S  C  V  V  S  I  G  S  G  M  P  L  H  F  S  T  R  F  C  H  </second_frame>
            <third_frame>   Y  L  F  L  T  A  K  K  T  K  P  *  K  S  F  F  Y  R  S  T  S  H  L  F  S  F  S  G  S  A  R  R  R  V  L  W  L  L  S  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A  L  E  S  I  H  L  L  Q  P  *  Q  W  Q  D  T  D  H  *  P  V  *  P  G  Q  :  I  L  E  C  H  S  N  K  C  S  P  L  A  A  V  L  G  Y  C  I  Y  C  Q  Q  K  K  K  T  S  I  *  G  L  Y  K  G  Y  S  A  G  A  T  L  L  *  R  S  H  H  R  V  F  G  M  Y  L  R  R  L  *  F  *  W  G  T  G  E  D  E  G  V  R  R   : A  N  I  E  *  P  I  P  W  K  K  S  *  R  G  Q  F  L  L  C  A  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K  A  *  C  Q  D  R  H  *  N  R  D  S  Y  N  G  T  K  S  A  *  C  :  V  R  A  A  H  R  S  H  Q  A  P  F  W  T  H  V  Q  I  S  Q  S  A  S  *  T  C  T  N  T  T  C  *  I  V  W  L  R  T  L  S  S  C  Q  F  C  I  A  P  V  P  D  *  H  L  Y  I  Q  E  C  C  L  C  *  F  L  D  F  P  W  R  K  F  *  D  T  *  *  I  I  H  *  F  L  F  Y  L  V  L  S  P  L  E  V  V  C  L  C  I  L  V  L  V  F  A  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29381" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31588"/>
                    <exon start="32047" stop="32266"/>
                    <exon start="32585" stop="32727"/>
                    <exon start="32910" stop="33047"/>
                    <exon start="33141" stop="33240"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1452</number_coding_nucleotides>
                  <number_encoded_amino_acids>484</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIYSLQQKRRNPRNLSSTDPLLIFSVSLVLHGGEFCGCYLLPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTSAPHLLRYLAIAFIVNKRRRPQFKDFIKVIQQEQHSCKDPITEFLACIYVDYDFDGAQEKMKECEELILNDPFLGKRAEEGSFSSVPLRDEFLENARLFISETYCRIHQRIDMGVLAEKLNLNLEEAERWMVNLIRTSKLDAKIDTETGTVTMEPNQPNVYEQLIDHTKPLSGRTYKLVSQLLEHAQTQLAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="29499" e_stop="29729"/>
            <exon e_start="30782" e_stop="30936"/>
            <exon e_start="31108" e_stop="31335"/>
            <exon e_start="31467" e_stop="31515"/>
            <exon e_start="32647" e_stop="32727"/>
            <exon e_start="32910" e_stop="32986"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.996"/>
          <exon-intron don_prob="0.976" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.526" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="29499" e_stop="29729" e_length="231"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="29730" i_stop="30781" i_length="1052"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="30782" e_stop="30936" e_length="155"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.979">
            <gDNA_intron_boundary i_start="30937" i_stop="31107" i_length="171"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31108" e_stop="31335" e_length="228"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.526">
            <gDNA_intron_boundary i_start="31336" i_stop="31466" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31467" e_stop="31515" e_length="49"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31516" i_stop="32646" i_length="1131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32647" e_stop="32727" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="32728" i_stop="32909" i_length="182"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32910" e_stop="32986" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29499" stop="29729"/>
              <exon start="30782" stop="30936"/>
              <exon start="31108" stop="31335"/>
              <exon start="31467" stop="31515"/>
              <exon start="32647" stop="32727"/>
              <exon start="32910" stop="32986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTACCGACAGTAGCAATCATGGCGTCGAAGTACGATTTGACGCCACGTGTAGCGCAGCAATTGGACATTCACTTGATTTTCCCGTTACTGGAGTTTTTGCAAGAGCAGGGATTATACCCAGATGAATATATACTCAAGGCGAAGATTGAGCTGCTTAATCACACTAACATGGTTGATTATGCTATGGATATTCATAAGTCTCTCTATCATACTGACGATGTGCCTCAAG : AAATGATGGAGAGGAGAGCCGAGGTTGTGGCAAGGTTGAAAGCACTTGAGGAAGCTGCAGCCCCATTGATCACTTTTTTGCAGAATTCCAGTGCTGTGCAGGAGTTGAGAGCTGACAAACAGCACAATCTTCAGTTGCTCCAGGAGCGGTACCAG : ATTGGTCCGGACCAGATAGAGGCATTGTATCAATATGCCAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCTGCTGATTATCTTTACCAGTACCGAGCATTGTGCACAAACAGTGACAGGAGCGTCAGTGCATTGTGGGGAAAGCTTGCAGCGGAGATACTAATGCAGAATTGGGATATTGCACTCGAGGAACTCAACCGCTTGAAAGAAATTATCGACTCAAAG : AGTTTCTCTACTCCGTTGAATCAAGTTCAGAATAGAATATGGCTAATGC : ATTGAGAGATGAATTCCTTGAAAATGCTCGTCTTTTTATCTCTGAGACCTACTGCCGCATTCACCAACGCATTGACATGGG : GGTTCTAGCTGAGAAGCTTAACTTGAACCTTGAGGAGGCAGAGCGATGGATGGTGAATCTTATCAGGACCTCAAAGC</gDNA_template>
            <first_frame> S  Y  R  Q  *  Q  S  W  R  R  S  T  I  *  R  H  V  *  R  S  N  W  T  F  T  *  F  S  R  Y  W  S  F  C  K  S  R  D  Y  T  Q  M  N  I  Y  S  R  R  R  L  S  C  L  I  T  L  T  W  L  I  M  L  W  I  F  I  S  L  S  I  I  L  T  M  C  L  K  :  K  *  W  R  G  E  P  R  L  W  Q  G  *  K  H  L  R  K  L  Q  P  H  *  S  L  F  C  R  I  P  V  L  C  R  S  *  E  L  T  N  S  T  I  F  S  C  S  R  S  G  T  R :   L  V  R  T  R  *  R  H  C  I  N  M  P  N  F  S  L  N  V  E  T  I  L  V  L  L  I  I  F  T  S  T  E  H  C  A  Q  T  V  T  G  A  S  V  H  C  G  E  S  L  Q  R  R  Y  *  C  R  I  G  I  L  H  S  R  N  S  T  A  *  K  K  L  S  T  Q  R :   V  S  L  L  R  *  I  K  F  R  I  E  Y  G  *  C  :  I  E  R  *  I  P  *  K  C  S  S  F  Y  L  *  D  L  L  P  H  S  P  T  H  *  H  G  :  G  S  S  *  E  A  *  L  E  P  *  G  G  R  A  M  D  G  E  S  Y  Q  D  L  K   </first_frame>
            <second_frame>  L  T  D  S  S  N  H  G  V  E  V  R  F  D  A  T  C  S  A  A  I  G  H  S  L  D  F  P  V  T  G  V  F  A  R  A  G  I  I  P  R  *  I  Y  T  Q  G  E  D  *  A  A  *  S  H  *  H  G  *  L  C  Y  G  Y  S  *  V  S  L  S  Y  *  R  C  A  S  R :   N  D  G  E  E  S  R  G  C  G  K  V  E  S  T  *  G  S  C  S  P  I  D  H  F  F  A  E  F  Q  C  C  A  G  V  E  S  *  Q  T  A  Q  S  S  V  A  P  G  A  V  P   : D  W  S  G  P  D  R  G  I  V  S  I  C  Q  I  S  V  *  M  W  K  L  F  W  C  C  *  L  S  L  P  V  P  S  I  V  H  K  Q  *  Q  E  R  Q  C  I  V  G  K  A  C  S  G  D  T  N  A  E  L  G  Y  C  T  R  G  T  Q  P  L  E  R  N  Y  R  L  K   : E  F  L  Y  S  V  E  S  S  S  E  *  N  M  A  N  A :   L  R  D  E  F  L  E  N  A  R  L  F  I  S  E  T  Y  C  R  I  H  Q  R  I  D  M  G :   V  L  A  E  K  L  N  L  N  L  E  E  A  E  R  W  M  V  N  L  I  R  T  S  K  </second_frame>
            <third_frame>   L  P  T  V  A  I  M  A  S  K  Y  D  L  T  P  R  V  A  Q  Q  L  D  I  H  L  I  F  P  L  L  E  F  L  Q  E  Q  G  L  Y  P  D  E  Y  I  L  K  A  K  I  E  L  L  N  H  T  N  M  V  D  Y  A  M  D  I  H  K  S  L  Y  H  T  D  D  V  P  Q   : E  M  M  E  R  R  A  E  V  V  A  R  L  K  A  L  E  E  A  A  A  P  L  I  T  F  L  Q  N  S  S  A  V  Q  E  L  R  A  D  K  Q  H  N  L  Q  L  L  Q  E  R  Y  Q  :  I  G  P  D  Q  I  E  A  L  Y  Q  Y  A  K  F  Q  F  E  C  G  N  Y  S  G  A  A  D  Y  L  Y  Q  Y  R  A  L  C  T  N  S  D  R  S  V  S  A  L  W  G  K  L  A  A  E  I  L  M  Q  N  W  D  I  A  L  E  E  L  N  R  L  K  E  I  I  D  S  K  :  S  F  S  T  P  L  N  Q  V  Q  N  R  I  W  L  M   : H  *  E  M  N  S  L  K  M  L  V  F  L  S  L  R  P  T  A  A  F  T  N  A  L  T  W   : G  F  *  L  R  S  L  T  *  T  L  R  R  Q  S  D  G  W  *  I  L  S  G  P  Q  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29501" stop="29729"/>
                    <exon start="30782" stop="30936"/>
                    <exon start="31108" stop="31335"/>
                    <exon start="31467" stop="31515"/>
                    <exon start="32647" stop="32651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPTVAIMASKYDLTPRVAQQLDIHLIFPLLEFLQEQGLYPDEYILKAKIELLNHTNMVDYAMDIHKSLYHTDDVPQEMMERRAEVVARLKALEEAAAPLITFLQNSSAVQELRADKQHNLQLLQERYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSDRSVSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFSTPLNQVQNRIWLMH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="50866" PGL_stop="52195"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50866" e_stop="50983"/>
            <exon e_start="51107" e_stop="52195"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.876" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50866" e_stop="50983" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.876">
            <gDNA_intron_boundary i_start="50984" i_stop="51106" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="51107" e_stop="52195" e_length="1089"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50866" stop="50983"/>
              <exon start="51107" stop="52195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50866" stop="50983"/>
              <exon start="51107" stop="51432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50901" stop="50983"/>
              <exon start="51107" stop="51711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592579" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCCACTGCTCAATTTTCTTTTCTTTGCCAATTACCATGGCTTGTACCAAACTACATTTTCCAATTACCGCGACGACTCTGCTGGTGATACTTATATTGGCTACCTTAGATTTCACAG : GTGCACAAACAGGAGTTTGTTATGGAAGAAATGGGAATGGATTACCATCTCCAGCAGATGTTGTGGCTCTATGTAATCGAAACAATATACGAAGAATGAGAATCTATGATCCTCATCAACCAACTCTCCAAGCCCTCAGAGGCTCGAATATTGAACTCATACTAGGCGTGCCAAATCCTGACCTTCAGAATATCGCGTCTAGCCAAGCTAACGCGAATGCTTGGGTCCAAAACAATGTTAGGAACTATGGTAATGTTAAGTTCAGGTATATAGCTGTTGGAAATGAAGTTAGTCCATTAAATGGCAACGCGCAGTATGTGCCTTTCGTGATCAATGCAATGAGAAACATTCAGAACGCGATTTCTGGCGCTGGTCTAGGAAACCAGATCAAAGTTTCTACTGCTATTGAAACCGAACTTACTACAGATACTTACCCTCCATCAAGAGGCAAGTTTAAAGACAACGTCCGAGGGTATGTTGATCCCATCATTAGATTCTTAGTAGCTAACCGCTCACCTTTACTTGTCAACATATATCCATACTTTGCAATAGCAAACAATCAAGCTATTAAGCTTGACTACGCGTTGTTTACATCCCCTGGAGTTGTTGTGAATGATAATGGAAGAGAATACCGCAACTTATTTGATGCACTCTTAGATGCTACATACTCGGCCCTTGAAAAAGCCGGTGGTTCATCTTTGGATATCGTTGTATCAGAGAGCGGTTGGCCTTCAGCTGGAGCAGGGCAATTGACCTCTATTGACAACGCGAGGACTTACAACAACAACTTGATTAGACATGTGAAAAGAGGGAGTCCGAAAAGACCATCAAAGCCTATTGAGGCTTACATTTTCGCCTTGTTTAATGAAAATCTCAAGAGCCCTGAAATTGAGAAACATTTTGGACTGTTTACACCAAACAGGCAGCCAAAATACCCAATCAGTTTCAACTAGCTAGACTATGCTACGGAATAAGAGTTAGTCGATCTTTTCTTCTTATAATATGTAGTTGAATAATCGAATCGTTGCTCAACTTGAAAACAGAGCAACCCTTCGCATGATATGTACTCATCCTACATGCTTATATAAG</gDNA_template>
            <first_frame> I  H  C  S  I  F  F  S  L  P  I  T  M  A  C  T  K  L  H  F  P  I  T  A  T  T  L  L  V  I  L  I  L  A  T  L  D  F  T   : G  A  Q  T  G  V  C  Y  G  R  N  G  N  G  L  P  S  P  A  D  V  V  A  L  C  N  R  N  N  I  R  R  M  R  I  Y  D  P  H  Q  P  T  L  Q  A  L  R  G  S  N  I  E  L  I  L  G  V  P  N  P  D  L  Q  N  I  A  S  S  Q  A  N  A  N  A  W  V  Q  N  N  V  R  N  Y  G  N  V  K  F  R  Y  I  A  V  G  N  E  V  S  P  L  N  G  N  A  Q  Y  V  P  F  V  I  N  A  M  R  N  I  Q  N  A  I  S  G  A  G  L  G  N  Q  I  K  V  S  T  A  I  E  T  E  L  T  T  D  T  Y  P  P  S  R  G  K  F  K  D  N  V  R  G  Y  V  D  P  I  I  R  F  L  V  A  N  R  S  P  L  L  V  N  I  Y  P  Y  F  A  I  A  N  N  Q  A  I  K  L  D  Y  A  L  F  T  S  P  G  V  V  V  N  D  N  G  R  E  Y  R  N  L  F  D  A  L  L  D  A  T  Y  S  A  L  E  K  A  G  G  S  S  L  D  I  V  V  S  E  S  G  W  P  S  A  G  A  G  Q  L  T  S  I  D  N  A  R  T  Y  N  N  N  L  I  R  H  V  K  R  G  S  P  K  R  P  S  K  P  I  E  A  Y  I  F  A  L  F  N  E  N  L  K  S  P  E  I  E  K  H  F  G  L  F  T  P  N  R  Q  P  K  Y  P  I  S  F  N  *  L  D  Y  A  T  E  *  E  L  V  D  L  F  F  L  *  Y  V  V  E  *  S  N  R  C  S  T  *  K  Q  S  N  P  S  H  D  M  Y  S  S  Y  M  L  I  *  </first_frame>
            <second_frame>  S  T  A  Q  F  S  F  L  C  Q  L  P  W  L  V  P  N  Y  I  F  Q  L  P  R  R  L  C  W  *  Y  L  Y  W  L  P  *  I  S  Q  :  V  H  K  Q  E  F  V  M  E  E  M  G  M  D  Y  H  L  Q  Q  M  L  W  L  Y  V  I  E  T  I  Y  E  E  *  E  S  M  I  L  I  N  Q  L  S  K  P  S  E  A  R  I  L  N  S  Y  *  A  C  Q  I  L  T  F  R  I  S  R  L  A  K  L  T  R  M  L  G  S  K  T  M  L  G  T  M  V  M  L  S  S  G  I  *  L  L  E  M  K  L  V  H  *  M  A  T  R  S  M  C  L  S  *  S  M  Q  *  E  T  F  R  T  R  F  L  A  L  V  *  E  T  R  S  K  F  L  L  L  L  K  P  N  L  L  Q  I  L  T  L  H  Q  E  A  S  L  K  T  T  S  E  G  M  L  I  P  S  L  D  S  *  *  L  T  A  H  L  Y  L  S  T  Y  I  H  T  L  Q  *  Q  T  I  K  L  L  S  L  T  T  R  C  L  H  P  L  E  L  L  *  M  I  M  E  E  N  T  A  T  Y  L  M  H  S  *  M  L  H  T  R  P  L  K  K  P  V  V  H  L  W  I  S  L  Y  Q  R  A  V  G  L  Q  L  E  Q  G  N  *  P  L  L  T  T  R  G  L  T  T  T  T  *  L  D  M  *  K  E  G  V  R  K  D  H  Q  S  L  L  R  L  T  F  S  P  C  L  M  K  I  S  R  A  L  K  L  R  N  I  L  D  C  L  H  Q  T  G  S  Q  N  T  Q  S  V  S  T  S  *  T  M  L  R  N  K  S  *  S  I  F  S  S  Y  N  M  *  L  N  N  R  I  V  A  Q  L  E  N  R  A  T  L  R  M  I  C  T  H  P  T  C  L  Y  K </second_frame>
            <third_frame>   P  L  L  N  F  L  F  F  A  N  Y  H  G  L  Y  Q  T  T  F  S  N  Y  R  D  D  S  A  G  D  T  Y  I  G  Y  L  R  F  H  R :   C  T  N  R  S  L  L  W  K  K  W  E  W  I  T  I  S  S  R  C  C  G  S  M  *  S  K  Q  Y  T  K  N  E  N  L  *  S  S  S  T  N  S  P  S  P  Q  R  L  E  Y  *  T  H  T  R  R  A  K  S  *  P  S  E  Y  R  V  *  P  S  *  R  E  C  L  G  P  K  Q  C  *  E  L  W  *  C  *  V  Q  V  Y  S  C  W  K  *  S  *  S  I  K  W  Q  R  A  V  C  A  F  R  D  Q  C  N  E  K  H  S  E  R  D  F  W  R  W  S  R  K  P  D  Q  S  F  Y  C  Y  *  N  R  T  Y  Y  R  Y  L  P  S  I  K  R  Q  V  *  R  Q  R  P  R  V  C  *  S  H  H  *  I  L  S  S  *  P  L  T  F  T  C  Q  H  I  S  I  L  C  N  S  K  Q  S  S  Y  *  A  *  L  R  V  V  Y  I  P  W  S  C  C  E  *  *  W  K  R  I  P  Q  L  I  *  C  T  L  R  C  Y  I  L  G  P  *  K  S  R  W  F  I  F  G  Y  R  C  I  R  E  R  L  A  F  S  W  S  R  A  I  D  L  Y  *  Q  R  E  D  L  Q  Q  Q  L  D  *  T  C  E  K  R  E  S  E  K  T  I  K  A  Y  *  G  L  H  F  R  L  V  *  *  K  S  Q  E  P  *  N  *  E  T  F  W  T  V  Y  T  K  Q  A  A  K  I  P  N  Q  F  Q  L  A  R  L  C  Y  G  I  R  V  S  R  S  F  L  L  I  I  C  S  *  I  I  E  S  L  L  N  L  K  T  E  Q  P  F  A  *  Y  V  L  I  L  H  A  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50866" stop="50983"/>
                    <exon start="51107" stop="52059"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1068</number_coding_nucleotides>
                  <number_encoded_amino_acids>356</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHCSIFFSLPITMACTKLHFPITATTLLVILILATLDFTGAQTGVCYGRNGNGLPSPADVVALCNRNNIRRMRIYDPHQPTLQALRGSNIELILGVPNPDLQNIASSQANANAWVQNNVRNYGNVKFRYIAVGNEVSPLNGNAQYVPFVINAMRNIQNAISGAGLGNQIKVSTAIETELTTDTYPPSRGKFKDNVRGYVDPIIRFLVANRSPLLVNIYPYFAIANNQAIKLDYALFTSPGVVVNDNGREYRNLFDALLDATYSALEKAGGSSLDIVVSESGWPSAGAGQLTSIDNARTYNNNLIRHVKRGSPKRPSKPIEAYIFALFNENLKSPEIEKHFGLFTPNRQPKYPISFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52796" PGL_stop="53579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52796" e_stop="53579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="52796" e_stop="53579" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52796" stop="53579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACCGAGTTTTGAAGACTCGGACTCGGGCCGAGTCATTACCCAACAAATGTCACCGGAACTCAAACCCTTATCGGCGCAAGAATGGGAAAATCTAATCGACGATTACAACCACGGTGGTTCACGGCGGCTCCGGTGGACTTCCATCAACTACGCCGCCGTTCCTCTTCTTGACCTCACACTTTCATCACTTCTCCGGAAAGATATCCCTCACAATCTCAAACTCCAGCTCCTCATCTTCATCGAAGAACACTTCAGCACAGACGAGAACGACATCGTTTCACCTAATTTCCTCAGCCGTCTCCTCGAAGCCCTCCGGTCAGTAATCCAATCACCAAACGACGGCGTTTCAACGTCGTTCGCTCTCAAGGAACAGTTTCTCATCTCCTCAACTTCAATTTTCGTTAATTACGTGGGTTATACATCGAGTTGTCTCGATTCTAGCTTTGTTACTCCTCTTGAAAGTTTAATTGAGCTTTTGTTAACTATTATTAACCGGCCGAATCATAGCGTTGACCGGCAAACTCGATCAATTGCTTGCGAGTGTTTACGTGAATTAGAAACTGCTTTTCCTTGTTTACTTTCGGAAATTGGATCACATTTGTGGAGTTTGTGCCAAAATGAGCGTACTCATGCTTCCCAAAGCTATGCATTATTGTTAGCAACTGTTGTTCATAACATTGCTAGATTAAAACCTACTGTTTCATTCAGTAATTCTTCGACGTTGGTTCCGTTTAGTGTACCTAGGTTTTTGGTTGATGAAAATGTTAAAAATGGACATTTTCA</gDNA_template>
            <first_frame> N  R  V  L  K  T  R  T  R  A  E  S  L  P  N  K  C  H  R  N  S  N  P  Y  R  R  K  N  G  K  I  *  S  T  I  T  T  T  V  V  H  G  G  S  G  G  L  P  S  T  T  P  P  F  L  F  L  T  S  H  F  H  H  F  S  G  K  I  S  L  T  I  S  N  S  S  S  S  S  S  S  K  N  T  S  A  Q  T  R  T  T  S  F  H  L  I  S  S  A  V  S  S  K  P  S  G  Q  *  S  N  H  Q  T  T  A  F  Q  R  R  S  L  S  R  N  S  F  S  S  P  Q  L  Q  F  S  L  I  T  W  V  I  H  R  V  V  S  I  L  A  L  L  L  L  L  K  V  *  L  S  F  C  *  L  L  L  T  G  R  I  I  A  L  T  G  K  L  D  Q  L  L  A  S  V  Y  V  N  *  K  L  L  F  L  V  Y  F  R  K  L  D  H  I  C  G  V  C  A  K  M  S  V  L  M  L  P  K  A  M  H  Y  C  *  Q  L  L  F  I  T  L  L  D  *  N  L  L  F  H  S  V  I  L  R  R  W  F  R  L  V  Y  L  G  F  W  L  M  K  M  L  K  M  D  I  F  </first_frame>
            <second_frame>  T  E  F  *  R  L  G  L  G  P  S  H  Y  P  T  N  V  T  G  T  Q  T  L  I  G  A  R  M  G  K  S  N  R  R  L  Q  P  R  W  F  T  A  A  P  V  D  F  H  Q  L  R  R  R  S  S  S  *  P  H  T  F  I  T  S  P  E  R  Y  P  S  Q  S  Q  T  P  A  P  H  L  H  R  R  T  L  Q  H  R  R  E  R  H  R  F  T  *  F  P  Q  P  S  P  R  S  P  P  V  S  N  P  I  T  K  R  R  R  F  N  V  V  R  S  Q  G  T  V  S  H  L  L  N  F  N  F  R  *  L  R  G  L  Y  I  E  L  S  R  F  *  L  C  Y  S  S  *  K  F  N  *  A  F  V  N  Y  Y  *  P  A  E  S  *  R  *  P  A  N  S  I  N  C  L  R  V  F  T  *  I  R  N  C  F  S  L  F  T  F  G  N  W  I  T  F  V  E  F  V  P  K  *  A  Y  S  C  F  P  K  L  C  I  I  V  S  N  C  C  S  *  H  C  *  I  K  T  Y  C  F  I  Q  *  F  F  D  V  G  S  V  *  C  T  *  V  F  G  *  *  K  C  *  K  W  T  F  S </second_frame>
            <third_frame>   P  S  F  E  D  S  D  S  G  R  V  I  T  Q  Q  M  S  P  E  L  K  P  L  S  A  Q  E  W  E  N  L  I  D  D  Y  N  H  G  G  S  R  R  L  R  W  T  S  I  N  Y  A  A  V  P  L  L  D  L  T  L  S  S  L  L  R  K  D  I  P  H  N  L  K  L  Q  L  L  I  F  I  E  E  H  F  S  T  D  E  N  D  I  V  S  P  N  F  L  S  R  L  L  E  A  L  R  S  V  I  Q  S  P  N  D  G  V  S  T  S  F  A  L  K  E  Q  F  L  I  S  S  T  S  I  F  V  N  Y  V  G  Y  T  S  S  C  L  D  S  S  F  V  T  P  L  E  S  L  I  E  L  L  L  T  I  I  N  R  P  N  H  S  V  D  R  Q  T  R  S  I  A  C  E  C  L  R  E  L  E  T  A  F  P  C  L  L  S  E  I  G  S  H  L  W  S  L  C  Q  N  E  R  T  H  A  S  Q  S  Y  A  L  L  L  A  T  V  V  H  N  I  A  R  L  K  P  T  V  S  F  S  N  S  S  T  L  V  P  F  S  V  P  R  F  L  V  D  E  N  V  K  N  G  H  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52798" stop="53577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSFEDSDSGRVITQQMSPELKPLSAQEWENLIDDYNHGGSRRLRWTSINYAAVPLLDLTLSSLLRKDIPHNLKLQLLIFIEEHFSTDENDIVSPNFLSRLLEALRSVIQSPNDGVSTSFALKEQFLISSTSIFVNYVGYTSSCLDSSFVTPLESLIELLLTIINRPNHSVDRQTRSIACECLRELETAFPCLLSEIGSHLWSLCQNERTHASQSYALLLATVVHNIARLKPTVSFSNSSTLVPFSVPRFLVDENVKNGHF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="62653" PGL_stop="60432"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62653" e_stop="62345"/>
            <exon e_start="61781" e_stop="61564"/>
            <exon e_start="61437" e_stop="61237"/>
            <exon e_start="60594" e_stop="60432"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.734" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="62653" e_stop="62345" e_length="309"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="62344" i_stop="61782" i_length="563"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61781" e_stop="61564" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.734">
            <gDNA_intron_boundary i_start="61563" i_stop="61438" i_length="126"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="61437" e_stop="61237" e_length="201"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.785">
            <gDNA_intron_boundary i_start="61236" i_stop="60595" i_length="642"/>
          </intron>
          <exon e_serial="4" e_score="0.939">
            <gDNA_exon_boundary e_start="60594" e_stop="60432" e_length="163"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62653" stop="62345"/>
              <exon start="61781" stop="61564"/>
              <exon start="61437" stop="61237"/>
              <exon start="60594" stop="60432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U572814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGATATTTTTCTTAGACCATAGAAAAATATAAAAATAAGAATGTGGCACGTGCACATCACCTGCACCACTCTCCATTTACCAAAACCCGTGTTCTTCGCGGCGGCCGGAAAATCAAGAAACATTTTATCCACCACCAGTCTACTACCAGTATGGCTAAAATGGCGGCTGACCCTTTTTCTGTACGGATAGAAGCTACTTGTTCGTCTTGTCCATTGAACCTTCGAAGCTCAAAGACAGCAACTTTTCGAATTCAAGCTCATAATAATCAGCACACAGATGACAAGAACAGATTCTACAAAGAGCTTG : GAACATTTGCTTTGAAAAGGAAGATTGAAGATTTGGTACTCCGTGCTGAAATGTTAGCACCAACAGCACTGGAATTTGAAGAAGCAAGACGCCTCAAACAGGAAGAAATTATTCGGGAATATGATTTGTGGGATGATGTAGCCAAGTCAAATGAGGACCTTGTGCAATTAGCTGAAAGCGCCAAGGCCGTTGATGCCCTCAAAGACCTTAGATACAAG : GCTGAAGAAGCTAAGTTGATTACGGAGCTAGCAGGAATGGATTCTATCAACTATGACTTTCTAAAGCAGGCTTATACAGCTTGTGTCAGTGTGAATAAGACATTAGATAAGTATGAAATGTCCAAGCTTCTTAGGGAGCCATATGATATGGAGGGAGCATGTGTCACCATTGAATCTGGAAGCGAGGGCATTTACTCGAAG : ATTTGGGCAGAAAAACTCACAAGAATGTATATCAAATGGGCAGAAAAACAAGGTCATAAGGCGAGGATAGTTGAGAAACAAGATTCAGAGAGTGGTGGTATCAAATATGTGATGATTGAGTTAGAATTTAAGTCAGCATATGGCTATCTTTCAGGGGAAAGAG</gDNA_template>
            <first_frame> G  D  I  F  L  R  P  *  K  N  I  K  I  R  M  W  H  V  H  I  T  C  T  T  L  H  L  P  K  P  V  F  F  A  A  A  G  K  S  R  N  I  L  S  T  T  S  L  L  P  V  W  L  K  W  R  L  T  L  F  L  Y  G  *  K  L  L  V  R  L  V  H  *  T  F  E  A  Q  R  Q  Q  L  F  E  F  K  L  I  I  I  S  T  Q  M  T  R  T  D  S  T  K  S  L  :  E  H  L  L  *  K  G  R  L  K  I  W  Y  S  V  L  K  C  *  H  Q  Q  H  W  N  L  K  K  Q  D  A  S  N  R  K  K  L  F  G  N  M  I  C  G  M  M  *  P  S  Q  M  R  T  L  C  N  *  L  K  A  P  R  P  L  M  P  S  K  T  L  D  T  R :   L  K  K  L  S  *  L  R  S  *  Q  E  W  I  L  S  T  M  T  F  *  S  R  L  I  Q  L  V  S  V  *  I  R  H  *  I  S  M  K  C  P  S  F  L  G  S  H  M  I  W  R  E  H  V  S  P  L  N  L  E  A  R  A  F  T  R  R :   F  G  Q  K  N  S  Q  E  C  I  S  N  G  Q  K  N  K  V  I  R  R  G  *  L  R  N  K  I  Q  R  V  V  V  S  N  M  *  *  L  S  *  N  L  S  Q  H  M  A  I  F  Q  G  K  E </first_frame>
            <second_frame>  G  I  F  F  L  D  H  R  K  I  *  K  *  E  C  G  T  C  T  S  P  A  P  L  S  I  Y  Q  N  P  C  S  S  R  R  P  E  N  Q  E  T  F  Y  P  P  P  V  Y  Y  Q  Y  G  *  N  G  G  *  P  F  F  C  T  D  R  S  Y  L  F  V  L  S  I  E  P  S  K  L  K  D  S  N  F  S  N  S  S  S  *  *  S  A  H  R  *  Q  E  Q  I  L  Q  R  A  W :   N  I  C  F  E  K  E  D  *  R  F  G  T  P  C  *  N  V  S  T  N  S  T  G  I  *  R  S  K  T  P  Q  T  G  R  N  Y  S  G  I  *  F  V  G  *  C  S  Q  V  K  *  G  P  C  A  I  S  *  K  R  Q  G  R  *  C  P  Q  R  P  *  I  Q   : G  *  R  S  *  V  D  Y  G  A  S  R  N  G  F  Y  Q  L  *  L  S  K  A  G  L  Y  S  L  C  Q  C  E  *  D  I  R  *  V  *  N  V  Q  A  S  *  G  A  I  *  Y  G  G  S  M  C  H  H  *  I  W  K  R  G  H  L  L  E   : D  L  G  R  K  T  H  K  N  V  Y  Q  M  G  R  K  T  R  S  *  G  E  D  S  *  E  T  R  F  R  E  W  W  Y  Q  I  C  D  D  *  V  R  I  *  V  S  I  W  L  S  F  R  G  K   </second_frame>
            <third_frame>   G  Y  F  S  *  T  I  E  K  Y  K  N  K  N  V  A  R  A  H  H  L  H  H  S  P  F  T  K  T  R  V  L  R  G  G  R  K  I  K  K  H  F  I  H  H  Q  S  T  T  S  M  A  K  M  A  A  D  P  F  S  V  R  I  E  A  T  C  S  S  C  P  L  N  L  R  S  S  K  T  A  T  F  R  I  Q  A  H  N  N  Q  H  T  D  D  K  N  R  F  Y  K  E  L   : G  T  F  A  L  K  R  K  I  E  D  L  V  L  R  A  E  M  L  A  P  T  A  L  E  F  E  E  A  R  R  L  K  Q  E  E  I  I  R  E  Y  D  L  W  D  D  V  A  K  S  N  E  D  L  V  Q  L  A  E  S  A  K  A  V  D  A  L  K  D  L  R  Y  K  :  A  E  E  A  K  L  I  T  E  L  A  G  M  D  S  I  N  Y  D  F  L  K  Q  A  Y  T  A  C  V  S  V  N  K  T  L  D  K  Y  E  M  S  K  L  L  R  E  P  Y  D  M  E  G  A  C  V  T  I  E  S  G  S  E  G  I  Y  S  K  :  I  W  A  E  K  L  T  R  M  Y  I  K  W  A  E  K  Q  G  H  K  A  R  I  V  E  K  Q  D  S  E  S  G  G  I  K  Y  V  M  I  E  L  E  F  K  S  A  Y  G  Y  L  S  G  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62636" stop="62345"/>
                    <exon start="61781" stop="61564"/>
                    <exon start="61437" stop="61237"/>
                    <exon start="60594" stop="60433"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TIEKYKNKNVARAHHLHHSPFTKTRVLRGGRKIKKHFIHHQSTTSMAKMAADPFSVRIEATCSSCPLNLRSSKTATFRIQAHNNQHTDDKNRFYKELGTFALKRKIEDLVLRAEMLAPTALEFEEARRLKQEEIIREYDLWDDVAKSNEDLVQLAESAKAVDALKDLRYKAEEAKLITELAGMDSINYDFLKQAYTACVSVNKTLDKYEMSKLLREPYDMEGACVTIESGSEGIYSKIWAEKLTRMYIKWAEKQGHKARIVEKQDSESGGIKYVMIELEFKSAYGYLSGER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67661" PGL_stop="65119"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67661" e_stop="67310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="67661" e_stop="67310" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67661" stop="67310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U589594" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCGGTATGTTCTAAAGCTTTAGCCTTTTATTATTATTTGTTCTTTCTTGAGCTGATTTGAGCTTATTCTCAACTAATTTGGGTCTCTGATATCATTTAATTATTCAAAATAAAAGTTTGGGGTTTGAAAATTCAATTGATTTTGATATATAAGCATGTAAAGGTAGAATCTTTATGACTGCATACCAAGTATTTGATGTGGAGCTGCAAAAAAGGAATTTTCTGAAACAGAAGTTATGGTTTTTTTTTGTTTTTTTTTTAGAAT</gDNA_template>
            <first_frame> S  K  L  S  V  K  N  I  I  Q  I  P  A  A  S  R  L  F  A  D  Q  K  P  V  I  A  K  P  S  S  G  M  F  *  S  F  S  L  L  L  L  F  V  L  S  *  A  D  L  S  L  F  S  T  N  L  G  L  *  Y  H  L  I  I  Q  N  K  S  L  G  F  E  N  S  I  D  F  D  I  *  A  C  K  G  R  I  F  M  T  A  Y  Q  V  F  D  V  E  L  Q  K  R  N  F  L  K  Q  K  L  W  F  F  F  V  F  F  L  E  </first_frame>
            <second_frame>  V  N  F  Q  *  K  I  L  F  R  F  R  R  L  P  G  C  S  P  T  K  S  Q  *  *  Q  N  P  A  P  V  C  S  K  A  L  A  F  Y  Y  Y  L  F  F  L  E  L  I  *  A  Y  S  Q  L  I  W  V  S  D  I  I  *  L  F  K  I  K  V  W  G  L  K  I  Q  L  I  L  I  Y  K  H  V  K  V  E  S  L  *  L  H  T  K  Y  L  M  W  S  C  K  K  G  I  F  *  N  R  S  Y  G  F  F  L  F  F  F  *  N </second_frame>
            <third_frame>   *  T  F  S  K  K  Y  Y  S  D  S  G  G  F  P  A  V  R  R  P  K  A  S  N  S  K  T  Q  L  R  Y  V  L  K  L  *  P  F  I  I  I  C  S  F  L  S  *  F  E  L  I  L  N  *  F  G  S  L  I  S  F  N  Y  S  K  *  K  F  G  V  *  K  F  N  *  F  *  Y  I  S  M  *  R  *  N  L  Y  D  C  I  P  S  I  *  C  G  A  A  K  K  E  F  S  E  T  E  V  M  V  F  F  C  F  F  F  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67660" e_stop="67571"/>
            <exon e_start="66370" e_stop="66178"/>
            <exon e_start="65390" e_stop="65119"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.911" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67660" e_stop="67571" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.911">
            <gDNA_intron_boundary i_start="67570" i_stop="66371" i_length="1200"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66370" e_stop="66178" e_length="193"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66177" i_stop="65391" i_length="787"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65390" e_stop="65119" e_length="272"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67660" stop="67571"/>
              <exon start="66370" stop="66178"/>
              <exon start="65390" stop="65119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAAACTTTCAGTAAAAAATATTATTCAGATTCCGGCGGCTTCCCGGCTGTTCGCCGACCAAAAGCCAGTAATAGCAAAACCCAGCTCCG : GTCACATGGACATGCCAAAAGGAGACAAACTTGTTCTAAGGGGTTTAAAATTTCATGGATACCATGGGGTGAAGCAAGAGGAAAGGAAGCTTGGTCAGAAGTTCCTGGTAGATGTTGATGCTTGGATGGATCTTCGATCTGCTGGTGAATCCGACTGCTTGTCCGATACTCTAAGTTATACTGATATATACAG : ACTAGTTAAAGAGGTTATGGAGGGGCCACCTAAAAATCTGCTAGAATCTGTGGCTCAACTCATTGCATCGACAACCCTCACCAAGTATCCAGAGGTATCTGCTGTTCGCGTTCAAGTTGGAAAGCCTCATGTGGCCGTCCAAGGGCCTGTTGACTACTTGGGTGTCGAGATCATTAGATACAGAAGTCTTGATGTTCAAAACTAGGACAGTAATATGCTTTGTATTATTAGCAACTTCAAATTTCTGCTGTTTGACAATCATTTTCAAGCCA</gDNA_template>
            <first_frame> V  N  F  Q  *  K  I  L  F  R  F  R  R  L  P  G  C  S  P  T  K  S  Q  *  *  Q  N  P  A  P  :  V  T  W  T  C  Q  K  E  T  N  L  F  *  G  V  *  N  F  M  D  T  M  G  *  S  K  R  K  G  S  L  V  R  S  S  W  *  M  L  M  L  G  W  I  F  D  L  L  V  N  P  T  A  C  P  I  L  *  V  I  L  I  Y  T   : D  *  L  K  R  L  W  R  G  H  L  K  I  C  *  N  L  W  L  N  S  L  H  R  Q  P  S  P  S  I  Q  R  Y  L  L  F  A  F  K  L  E  S  L  M  W  P  S  K  G  L  L  T  T  W  V  S  R  S  L  D  T  E  V  L  M  F  K  T  R  T  V  I  C  F  V  L  L  A  T  S  N  F  C  C  L  T  I  I  F  K  P </first_frame>
            <second_frame>  *  T  F  S  K  K  Y  Y  S  D  S  G  G  F  P  A  V  R  R  P  K  A  S  N  S  K  T  Q  L  R :   S  H  G  H  A  K  R  R  Q  T  C  S  K  G  F  K  I  S  W  I  P  W  G  E  A  R  G  K  E  A  W  S  E  V  P  G  R  C  *  C  L  D  G  S  S  I  C  W  *  I  R  L  L  V  R  Y  S  K  L  Y  *  Y  I  Q  :  T  S  *  R  G  Y  G  G  A  T  *  K  S  A  R  I  C  G  S  T  H  C  I  D  N  P  H  Q  V  S  R  G  I  C  C  S  R  S  S  W  K  A  S  C  G  R  P  R  A  C  *  L  L  G  C  R  D  H  *  I  Q  K  S  *  C  S  K  L  G  Q  *  Y  A  L  Y  Y  *  Q  L  Q  I  S  A  V  *  Q  S  F  S  S   </second_frame>
            <third_frame>   K  L  S  V  K  N  I  I  Q  I  P  A  A  S  R  L  F  A  D  Q  K  P  V  I  A  K  P  S  S   : G  H  M  D  M  P  K  G  D  K  L  V  L  R  G  L  K  F  H  G  Y  H  G  V  K  Q  E  E  R  K  L  G  Q  K  F  L  V  D  V  D  A  W  M  D  L  R  S  A  G  E  S  D  C  L  S  D  T  L  S  Y  T  D  I  Y  R :   L  V  K  E  V  M  E  G  P  P  K  N  L  L  E  S  V  A  Q  L  I  A  S  T  T  L  T  K  Y  P  E  V  S  A  V  R  V  Q  V  G  K  P  H  V  A  V  Q  G  P  V  D  Y  L  G  V  E  I  I  R  Y  R  S  L  D  V  Q  N  *  D  S  N  M  L  C  I  I  S  N  F  K  F  L  L  F  D  N  H  F  Q  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67658" stop="67571"/>
                    <exon start="66370" stop="66178"/>
                    <exon start="65390" stop="65186"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLSVKNIIQIPAASRLFADQKPVIAKPSSGHMDMPKGDKLVLRGLKFHGYHGVKQEERKLGQKFLVDVDAWMDLRSAGESDCLSDTLSYTDIYRLVKEVMEGPPKNLLESVAQLIASTTLTKYPEVSAVRVQVGKPHVAVQGPVDYLGVEIIRYRSLDVQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="68879" PGL_stop="69257"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68879" e_stop="69257"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="68879" e_stop="69257" e_length="379"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68879" stop="69201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68955" stop="69257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590625" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATGACCTTAACTCAGAGCGTTGTTTAATGGAGAAATGAAACTTGAAAGTTGCTCTTTTTTTCACTTTTGTTCAACTGATTTTTACAATTTTTTGGTCTTTTACAGTTTTGTTGTTTACATGAAGTTAAGCTAAAGAAAGGATATCAGACTATGAACAAGGCTAGATACAAGAGTGACACCTACCTTGCTCTATACAAAGGTTACATGAAACTAAAACTTGAAGACTTTCTAAACTGCTGCAAACTAACATCTGACTTCCTGAAAGTAAACCAAGAGACTGGGAATTCAACGAGGCTGCTGGATGCTGCGGAAACTGTTCCTCGGGCTCACGATCTTGGATGGCTTCTCAAAGTATTTGGGTGGACCAATGGGGGAT</gDNA_template>
            <first_frame> *  M  T  L  T  Q  S  V  V  *  W  R  N  E  T  *  K  L  L  F  F  S  L  L  F  N  *  F  L  Q  F  F  G  L  L  Q  F  C  C  L  H  E  V  K  L  K  K  G  Y  Q  T  M  N  K  A  R  Y  K  S  D  T  Y  L  A  L  Y  K  G  Y  M  K  L  K  L  E  D  F  L  N  C  C  K  L  T  S  D  F  L  K  V  N  Q  E  T  G  N  S  T  R  L  L  D  A  A  E  T  V  P  R  A  H  D  L  G  W  L  L  K  V  F  G  W  T  N  G  G  </first_frame>
            <second_frame>  K  *  P  *  L  R  A  L  F  N  G  E  M  K  L  E  S  C  S  F  F  H  F  C  S  T  D  F  Y  N  F  L  V  F  Y  S  F  V  V  Y  M  K  L  S  *  R  K  D  I  R  L  *  T  R  L  D  T  R  V  T  P  T  L  L  Y  T  K  V  T  *  N  *  N  L  K  T  F  *  T  A  A  N  *  H  L  T  S  *  K  *  T  K  R  L  G  I  Q  R  G  C  W  M  L  R  K  L  F  L  G  L  T  I  L  D  G  F  S  K  Y  L  G  G  P  M  G  D </second_frame>
            <third_frame>   N  D  L  N  S  E  R  C  L  M  E  K  *  N  L  K  V  A  L  F  F  T  F  V  Q  L  I  F  T  I  F  W  S  F  T  V  L  L  F  T  *  S  *  A  K  E  R  I  S  D  Y  E  Q  G  *  I  Q  E  *  H  L  P  C  S  I  Q  R  L  H  E  T  K  T  *  R  L  S  K  L  L  Q  T  N  I  *  L  P  E  S  K  P  R  D  W  E  F  N  E  A  A  G  C  C  G  N  C  S  S  G  S  R  S  W  M  A  S  Q  S  I  W  V  D  Q  W  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68960" stop="69256"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLQFFGLLQFCCLHEVKLKKGYQTMNKARYKSDTYLALYKGYMKLKLEDFLNCCKLTSDFLKVNQETGNSTRLLDAAETVPRAHDLGWLLKVFGWTNGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71041" PGL_stop="68880"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71041" e_stop="70985"/>
            <exon e_start="69970" e_stop="68880"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.862" e_score="0.971"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="71041" e_stop="70985" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.862">
            <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="69970" e_stop="68880" e_length="1091"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="68880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71019" stop="70985"/>
              <exon start="69970" stop="69700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG : GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATGGTATGCACAATCTGTCTATATCTTGTAATTAACCTACAGTCAGCAGAAAGATAATGTTCGGTTTGCATGGTTTACTGAAGTTTTAGTGCAGAACCTGTCTTGAAACCGAAAAAAGTGAGGAACCTTTAGTCAATTAGATCTTTATACTATAAACTCAACGAGTCTGGGGATCCCTGCTGGTGTCGGAATTTGTGTGAGCCTGTTGAAACAAGATGGGAAAATTCCTACATGCCTGGTCTTAGTTGTGATTATTTTTGGTGTTTACTATGGTTACTCTTGTATGATGATTTGCTTATAACTTGATAAAACAGGTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAACAACGCTCTGAGTTAAGGTCATTT</gDNA_template>
            <first_frame> I  S  Y  V  Y  E  F  V  S  V  A  E  E  Q  K  I  C  L  K  :  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W  Y  A  Q  S  V  Y  I  L  *  L  T  Y  S  Q  Q  K  D  N  V  R  F  A  W  F  T  E  V  L  V  Q  N  L  S  *  N  R  K  K  *  G  T  F  S  Q  L  D  L  Y  T  I  N  S  T  S  L  G  I  P  A  G  V  G  I  C  V  S  L  L  K  Q  D  G  K  I  P  T  C  L  V  L  V  V  I  I  F  G  V  Y  Y  G  Y  S  C  M  M  I  C  L  *  L  D  K  T  G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L  N  N  A  L  S  *  G  H   </first_frame>
            <second_frame>  F  H  T  C  T  S  S  S  L  *  L  K  N  K  K  S  V  *  R :   Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y  G  M  H  N  L  S  I  S  C  N  *  P  T  V  S  R  K  I  M  F  G  L  H  G  L  L  K  F  *  C  R  T  C  L  E  T  E  K  S  E  E  P  L  V  N  *  I  F  I  L  *  T  Q  R  V  W  G  S  L  L  V  S  E  F  V  *  A  C  *  N  K  M  G  K  F  L  H  A  W  S  *  L  *  L  F  L  V  F  T  M  V  T  L  V  *  *  F  A  Y  N  L  I  K  Q  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  T  T  L  *  V  K  V  I  </second_frame>
            <third_frame>   F  I  R  V  R  V  R  L  C  S  *  R  T  K  N  L  F  K   : G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  V  C  T  I  C  L  Y  L  V  I  N  L  Q  S  A  E  R  *  C  S  V  C  M  V  Y  *  S  F  S  A  E  P  V  L  K  P  K  K  V  R  N  L  *  S  I  R  S  L  Y  Y  K  L  N  E  S  G  D  P  C  W  C  R  N  L  C  E  P  V  E  T  R  W  E  N  S  Y  M  P  G  L  S  C  D  Y  F  W  C  L  L  W  L  L  L  Y  D  D  L  L  I  T  *  *  N  R  F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K  Q  R  S  E  L  R  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69580"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGMHNLSISCN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="71041" e_stop="70985"/>
            <exon e_start="69970" e_stop="69612"/>
            <exon e_start="69300" e_stop="68904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.862" e_score="0.982"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="71041" e_stop="70985" e_length="57"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.862">
            <gDNA_intron_boundary i_start="70984" i_stop="69971" i_length="1014"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69970" e_stop="69612" e_length="359"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69611" i_stop="69301" i_length="311"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69300" e_stop="68904" e_length="397"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71041" stop="70985"/>
              <exon start="69970" stop="69612"/>
              <exon start="69300" stop="68904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71019" stop="70985"/>
              <exon start="69970" stop="69700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCATACGTGTACGAGTTCGTCTCTGTAGCTGAAGAACAAAAAATCTGTTTAAAG : GTATTAATTTCGAAAAAGCAATATGGCATTAGTTTCTGGAGGAAGATCAACGCTGAATCCAAATGCGCCCCTCTTTGTTCCTTCATTTGTGCGCCAGGTAGAGGATTTTTCACCAGAATGGTGGAACTTGGTGACAACTTCAACATGGTTCCATGACTACTGGATGAGCCAGAACCAGGGAGAGGAATATGGTGCTGGTAATGATGTTGCTGATTTGCTTCCTGAAAATATTGATCTCAATGTTGATGAGGACATCTTGAACATGGAAGCTCAGTTTGAGGAATTTCTTCAATCTTCCGAAAATGAGCAACAAGGAATTAAGTCATCTCTCTATGGTGTCAATGCGATGCCACAATATG : GTTTACCATCTGATGCACTGATTAGAACATTGAGTTCACCAAGATCCCCCATTGGTCCACCCAAATACTTTGAGAAGCCATCCAAGATCGTGAGCCCGAGGAACAGTTTCCGCAGCATCCAGCAGCCTCGTTGAATTCCCAGTCTCTTGGTTTACTTTCAGGAAGTCAGATGTTAGTTTGCAGCAGTTTAGAAAGTCTTCAAGTTTTAGTTTCATGTAACCTTTGTATAGAGCAAGGTAGGTGTCACTCTTGTATCTAGCCTTGTTCATAGTCTGATATCCTTTCTTTAGCTTAACTTCATGTAAACAACAAAACTGTAAAAGACCAAAAAATTGTAAAAATCAGTTGAACAAAAGTGAAAAAAAGAGCAACTTTCAAGTTTCATTTCTCCATTAAA</gDNA_template>
            <first_frame> I  S  Y  V  Y  E  F  V  S  V  A  E  E  Q  K  I  C  L  K  :  V  L  I  S  K  K  Q  Y  G  I  S  F  W  R  K  I  N  A  E  S  K  C  A  P  L  C  S  F  I  C  A  P  G  R  G  F  F  T  R  M  V  E  L  G  D  N  F  N  M  V  P  *  L  L  D  E  P  E  P  G  R  G  I  W  C  W  *  *  C  C  *  F  A  S  *  K  Y  *  S  Q  C  *  *  G  H  L  E  H  G  S  S  V  *  G  I  S  S  I  F  R  K  *  A  T  R  N  *  V  I  S  L  W  C  Q  C  D  A  T  I  W :   F  T  I  *  C  T  D  *  N  I  E  F  T  K  I  P  H  W  S  T  Q  I  L  *  E  A  I  Q  D  R  E  P  E  E  Q  F  P  Q  H  P  A  A  S  L  N  S  Q  S  L  G  L  L  S  G  S  Q  M  L  V  C  S  S  L  E  S  L  Q  V  L  V  S  C  N  L  C  I  E  Q  G  R  C  H  S  C  I  *  P  C  S  *  S  D  I  L  S  L  A  *  L  H  V  N  N  K  T  V  K  D  Q  K  I  V  K  I  S  *  T  K  V  K  K  R  A  T  F  K  F  H  F  S  I  K </first_frame>
            <second_frame>  F  H  T  C  T  S  S  S  L  *  L  K  N  K  K  S  V  *  R :   Y  *  F  R  K  S  N  M  A  L  V  S  G  G  R  S  T  L  N  P  N  A  P  L  F  V  P  S  F  V  R  Q  V  E  D  F  S  P  E  W  W  N  L  V  T  T  S  T  W  F  H  D  Y  W  M  S  Q  N  Q  G  E  E  Y  G  A  G  N  D  V  A  D  L  L  P  E  N  I  D  L  N  V  D  E  D  I  L  N  M  E  A  Q  F  E  E  F  L  Q  S  S  E  N  E  Q  Q  G  I  K  S  S  L  Y  G  V  N  A  M  P  Q  Y   : G  L  P  S  D  A  L  I  R  T  L  S  S  P  R  S  P  I  G  P  P  K  Y  F  E  K  P  S  K  I  V  S  P  R  N  S  F  R  S  I  Q  Q  P  R  *  I  P  S  L  L  V  Y  F  Q  E  V  R  C  *  F  A  A  V  *  K  V  F  K  F  *  F  H  V  T  F  V  *  S  K  V  G  V  T  L  V  S  S  L  V  H  S  L  I  S  F  L  *  L  N  F  M  *  T  T  K  L  *  K  T  K  K  L  *  K  S  V  E  Q  K  *  K  K  E  Q  L  S  S  F  I  S  P  L   </second_frame>
            <third_frame>   F  I  R  V  R  V  R  L  C  S  *  R  T  K  N  L  F  K   : G  I  N  F  E  K  A  I  W  H  *  F  L  E  E  D  Q  R  *  I  Q  M  R  P  S  L  F  L  H  L  C  A  R  *  R  I  F  H  Q  N  G  G  T  W  *  Q  L  Q  H  G  S  M  T  T  G  *  A  R  T  R  E  R  N  M  V  L  V  M  M  L  L  I  C  F  L  K  I  L  I  S  M  L  M  R  T  S  *  T  W  K  L  S  L  R  N  F  F  N  L  P  K  M  S  N  K  E  L  S  H  L  S  M  V  S  M  R  C  H  N  M  :  V  Y  H  L  M  H  *  L  E  H  *  V  H  Q  D  P  P  L  V  H  P  N  T  L  R  S  H  P  R  S  *  A  R  G  T  V  S  A  A  S  S  S  L  V  E  F  P  V  S  W  F  T  F  R  K  S  D  V  S  L  Q  Q  F  R  K  S  S  S  F  S  F  M  *  P  L  Y  R  A  R  *  V  S  L  L  Y  L  A  L  F  I  V  *  Y  P  F  F  S  L  T  S  C  K  Q  Q  N  C  K  R  P  K  N  C  K  N  Q  L  N  K  S  E  K  K  S  N  F  Q  V  S  F  L  H  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69963" stop="69612"/>
                    <exon start="69300" stop="69167"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>483</number_coding_nucleotides>
                  <number_encoded_amino_acids>161</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRKSNMALVSGGRSTLNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGAGNDVADLLPENIDLNVDEDILNMEAQFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSDALIRTLSSPRSPIGPPKYFEKPSKIVSPRNSFRSIQQPR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="74939" PGL_stop="74474"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74939" e_stop="74474"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="74939" e_stop="74474" e_length="466"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74939" stop="74474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTAATTAGCTCTTTGATGGCTGGTCTTCAATACAAATTTTTTCCAACAGATTTTTTCTTCCCAATTCAAAAAACAGTTAGTGGAGAAAACACATCAAAGCAAAATCTCTTAATCAAGATTAGAAATAATGATGAGTCCTTAATTGAGGAATCAAAGGGCAAAATTGTCATTAACAACAACAAGAAGAATCTCAAAGCTATTTCTTCATCTTCATTAGCTTTGATTTCTGTGCCAAAACAGAAGAAAGATCAAGATTAATCAACTGATTATTCTTTTAATCATATAGTAATTAATTGTATGATTAAGAATAATCTTGTTCTCTTTGCTATCTTTTCTCCTATTTTTTTTTCTTTGAGTTTAATAAATATTTAGGAGGCTTTTGGGAAAAGTTATTAGATTTTGTTTGATGTATTATATAAGTTTGCAATTCAATAAGACAGGAACAATAGTTTCTATGATC</gDNA_template>
            <first_frame> F  F  L  I  S  S  L  M  A  G  L  Q  Y  K  F  F  P  T  D  F  F  F  P  I  Q  K  T  V  S  G  E  N  T  S  K  Q  N  L  L  I  K  I  R  N  N  D  E  S  L  I  E  E  S  K  G  K  I  V  I  N  N  N  K  K  N  L  K  A  I  S  S  S  S  L  A  L  I  S  V  P  K  Q  K  K  D  Q  D  *  S  T  D  Y  S  F  N  H  I  V  I  N  C  M  I  K  N  N  L  V  L  F  A  I  F  S  P  I  F  F  S  L  S  L  I  N  I  *  E  A  F  G  K  S  Y  *  I  L  F  D  V  L  Y  K  F  A  I  Q  *  D  R  N  N  S  F  Y  D  </first_frame>
            <second_frame>  F  F  *  L  A  L  *  W  L  V  F  N  T  N  F  F  Q  Q  I  F  S  S  Q  F  K  K  Q  L  V  E  K  T  H  Q  S  K  I  S  *  S  R  L  E  I  M  M  S  P  *  L  R  N  Q  R  A  K  L  S  L  T  T  T  R  R  I  S  K  L  F  L  H  L  H  *  L  *  F  L  C  Q  N  R  R  K  I  K  I  N  Q  L  I  I  L  L  I  I  *  *  L  I  V  *  L  R  I  I  L  F  S  L  L  S  F  L  L  F  F  F  L  *  V  *  *  I  F  R  R  L  L  G  K  V  I  R  F  C  L  M  Y  Y  I  S  L  Q  F  N  K  T  G  T  I  V  S  M  I </second_frame>
            <third_frame>   F  F  N  *  L  F  D  G  W  S  S  I  Q  I  F  S  N  R  F  F  L  P  N  S  K  N  S  *  W  R  K  H  I  K  A  K  S  L  N  Q  D  *  K  *  *  *  V  L  N  *  G  I  K  G  Q  N  C  H  *  Q  Q  Q  E  E  S  Q  S  Y  F  F  I  F  I  S  F  D  F  C  A  K  T  E  E  R  S  R  L  I  N  *  L  F  F  *  S  Y  S  N  *  L  Y  D  *  E  *  S  C  S  L  C  Y  L  F  S  Y  F  F  F  F  E  F  N  K  Y  L  G  G  F  W  E  K  L  L  D  F  V  *  C  I  I  *  V  C  N  S  I  R  Q  E  Q  *  F  L  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74939" stop="74676"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLISSLMAGLQYKFFPTDFFFPIQKTVSGENTSKQNLLIKIRNNDESLIEESKGKIVINNNKKNLKAISSSSLALISVPKQKKDQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="79618" PGL_stop="78772"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79618" e_stop="78772"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="79618" e_stop="78772" e_length="847"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79618" stop="78840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79560" stop="78772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATTTGATAAGGGTGCCACCTCACGAACTCAATGCTATGAGTTCACCTTGGCCATTTGTAGCTTGGGGAATGGATGTCATCGGTCCTATAGAACCGGCCGCTTCCAATGGACACAGATTTATTTTGGTTGCCATCGATTATTTCACCAAATGGGTGGAAGCAGCCTCTTACAAATCGGTAACCAAGAAAGTGGTGGCCGACTTTGTCCGCAACAATTTGATCTGCCGATTTGGAGTTCCAGAATCCGTCATCACTGATAACGGTGCAAATCTCAACAGTCATCTGATGAAAGAGATATGTGAACAATTTAAGATTATCCACCGAAGGTCAACTGCTTATCGCCCTCAAATGAACGGAGCTGTAGAGGCCGCCAACAAGAACATCAAGAAGATTCTGAGGAAAATGATTGACAAGCAGCGGGGTTGGCATGAAATGTTGCCATATGCTCTACTGGGTTATCGAACGACGGTCAGAACATCAACTGGGGCTACTCCATACTTGCTAGTATACGGAACAGAAGCAGTCGTACCTGTCGAAGTCGAGATACCGTCACTGAGGATCATCCAAGAAGCCGAGCTAAGTAATGCTGAGTGGGTTAGCAAACGGATTGATCAACTAGCCTTGATTGATGAAAAGAGGATGGTTGCTGTTTGTCATGGCCAGTTGTATAGACAAAGAATGACTCGCGCTTTTCACAAAAGAGTAAGAGCCAGAAATTTTGAAGTTGGTCAGTTGGTTCTTAAGCGTATTTTTCCTCATCAAGACGAGTACAAAGGAAAGTTCGCACCAAACAGGCAAGGTCCTTACATGGTCCGCAAAGTACTATCTGGAGGTGCTTTAGTCTTG</gDNA_template>
            <first_frame> R  F  D  K  G  A  T  S  R  T  Q  C  Y  E  F  T  L  A  I  C  S  L  G  N  G  C  H  R  S  Y  R  T  G  R  F  Q  W  T  Q  I  Y  F  G  C  H  R  L  F  H  Q  M  G  G  S  S  L  L  Q  I  G  N  Q  E  S  G  G  R  L  C  P  Q  Q  F  D  L  P  I  W  S  S  R  I  R  H  H  *  *  R  C  K  S  Q  Q  S  S  D  E  R  D  M  *  T  I  *  D  Y  P  P  K  V  N  C  L  S  P  S  N  E  R  S  C  R  G  R  Q  Q  E  H  Q  E  D  S  E  E  N  D  *  Q  A  A  G  L  A  *  N  V  A  I  C  S  T  G  L  S  N  D  G  Q  N  I  N  W  G  Y  S  I  L  A  S  I  R  N  R  S  S  R  T  C  R  S  R  D  T  V  T  E  D  H  P  R  S  R  A  K  *  C  *  V  G  *  Q  T  D  *  S  T  S  L  D  *  *  K  E  D  G  C  C  L  S  W  P  V  V  *  T  K  N  D  S  R  F  S  Q  K  S  K  S  Q  K  F  *  S  W  S  V  G  S  *  A  Y  F  S  S  S  R  R  V  Q  R  K  V  R  T  K  Q  A  R  S  L  H  G  P  Q  S  T  I  W  R  C  F  S  L  </first_frame>
            <second_frame>  D  L  I  R  V  P  P  H  E  L  N  A  M  S  S  P  W  P  F  V  A  W  G  M  D  V  I  G  P  I  E  P  A  A  S  N  G  H  R  F  I  L  V  A  I  D  Y  F  T  K  W  V  E  A  A  S  Y  K  S  V  T  K  K  V  V  A  D  F  V  R  N  N  L  I  C  R  F  G  V  P  E  S  V  I  T  D  N  G  A  N  L  N  S  H  L  M  K  E  I  C  E  Q  F  K  I  I  H  R  R  S  T  A  Y  R  P  Q  M  N  G  A  V  E  A  A  N  K  N  I  K  K  I  L  R  K  M  I  D  K  Q  R  G  W  H  E  M  L  P  Y  A  L  L  G  Y  R  T  T  V  R  T  S  T  G  A  T  P  Y  L  L  V  Y  G  T  E  A  V  V  P  V  E  V  E  I  P  S  L  R  I  I  Q  E  A  E  L  S  N  A  E  W  V  S  K  R  I  D  Q  L  A  L  I  D  E  K  R  M  V  A  V  C  H  G  Q  L  Y  R  Q  R  M  T  R  A  F  H  K  R  V  R  A  R  N  F  E  V  G  Q  L  V  L  K  R  I  F  P  H  Q  D  E  Y  K  G  K  F  A  P  N  R  Q  G  P  Y  M  V  R  K  V  L  S  G  G  A  L  V  L </second_frame>
            <third_frame>   I  *  *  G  C  H  L  T  N  S  M  L  *  V  H  L  G  H  L  *  L  G  E  W  M  S  S  V  L  *  N  R  P  L  P  M  D  T  D  L  F  W  L  P  S  I  I  S  P  N  G  W  K  Q  P  L  T  N  R  *  P  R  K  W  W  P  T  L  S  A  T  I  *  S  A  D  L  E  F  Q  N  P  S  S  L  I  T  V  Q  I  S  T  V  I  *  *  K  R  Y  V  N  N  L  R  L  S  T  E  G  Q  L  L  I  A  L  K  *  T  E  L  *  R  P  P  T  R  T  S  R  R  F  *  G  K  *  L  T  S  S  G  V  G  M  K  C  C  H  M  L  Y  W  V  I  E  R  R  S  E  H  Q  L  G  L  L  H  T  C  *  Y  T  E  Q  K  Q  S  Y  L  S  K  S  R  Y  R  H  *  G  S  S  K  K  P  S  *  V  M  L  S  G  L  A  N  G  L  I  N  *  P  *  L  M  K  R  G  W  L  L  F  V  M  A  S  C  I  D  K  E  *  L  A  L  F  T  K  E  *  E  P  E  I  L  K  L  V  S  W  F  L  S  V  F  F  L  I  K  T  S  T  K  E  S  S  H  Q  T  G  K  V  L  T  W  S  A  K  Y  Y  L  E  V  L  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79617" stop="78772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIRVPPHELNAMSSPWPFVAWGMDVIGPIEPAASNGHRFILVAIDYFTKWVEAASYKSVTKKVVADFVRNNLICRFGVPESVITDNGANLNSHLMKEICEQFKIIHRRSTAYRPQMNGAVEAANKNIKKILRKMIDKQRGWHEMLPYALLGYRTTVRTSTGATPYLLVYGTEAVVPVEVEIPSLRIIQEAELSNAEWVSKRIDQLALIDEKRMVAVCHGQLYRQRMTRAFHKRVRARNFEVGQLVLKRIFPHQDEYKGKFAPNRQGPYMVRKVLSGGALVL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="85702" PGL_stop="86239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85702" e_stop="86239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="85702" e_stop="86239" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85702" stop="86239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602202" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGCTGGTTCTGAGTTGGATCTATGTTTGATGAAGGGAAGTAGACCGGAGGTCTTGCATCAGCAATATTAGTACCAAATCCAGGTGGAGGCGCATCCTGTCTCCGTTGCATTTCAACTTTCATTTCAGCAATCTGTTGCATCAGCTGCATGATCAATTCGTTCTGTTCCACTACAGTGGGCTGAGCCACCACAACGTCAGTAAGATGCCCTTCGTCATTGTTGTCTCCCATAACTGTTTTTCCTTTGTCTGAATTTGATCGAGGGAAGGAATCTGTAGGACCTTTCGATCTGGTGAAGTAAGGATGATCTGCTAGCTTTATTGACACAGATCAGTAAAAAGGTACCTGAGAGGTAAAAACAACTCAAAGGCAAATTTGTTAGTGCATATCCAGAGTACAAAATGCATAATATCGCACATAAAACAGATAAGCACACAAGTCGTTTTGTTTGAGGATATCTTAACCCACGAATAAGGACGGATATATATTTTGAACAAACAGGAATTTGTTTGTTTGGCGCTATCTTGGGAAATCTG</gDNA_template>
            <first_frame> E  G  W  F  *  V  G  S  M  F  D  E  G  K  *  T  G  G  L  A  S  A  I  L  V  P  N  P  G  G  G  A  S  C  L  R  C  I  S  T  F  I  S  A  I  C  C  I  S  C  M  I  N  S  F  C  S  T  T  V  G  *  A  T  T  T  S  V  R  C  P  S  S  L  L  S  P  I  T  V  F  P  L  S  E  F  D  R  G  K  E  S  V  G  P  F  D  L  V  K  *  G  *  S  A  S  F  I  D  T  D  Q  *  K  G  T  *  E  V  K  T  T  Q  R  Q  I  C  *  C  I  S  R  V  Q  N  A  *  Y  R  T  *  N  R  *  A  H  K  S  F  C  L  R  I  S  *  P  T  N  K  D  G  Y  I  F  *  T  N  R  N  L  F  V  W  R  Y  L  G  K  S  </first_frame>
            <second_frame>  K  A  G  S  E  L  D  L  C  L  M  K  G  S  R  P  E  V  L  H  Q  Q  Y  *  Y  Q  I  Q  V  E  A  H  P  V  S  V  A  F  Q  L  S  F  Q  Q  S  V  A  S  A  A  *  S  I  R  S  V  P  L  Q  W  A  E  P  P  Q  R  Q  *  D  A  L  R  H  C  C  L  P  *  L  F  F  L  C  L  N  L  I  E  G  R  N  L  *  D  L  S  I  W  *  S  K  D  D  L  L  A  L  L  T  Q  I  S  K  K  V  P  E  R  *  K  Q  L  K  G  K  F  V  S  A  Y  P  E  Y  K  M  H  N  I  A  H  K  T  D  K  H  T  S  R  F  V  *  G  Y  L  N  P  R  I  R  T  D  I  Y  F  E  Q  T  G  I  C  L  F  G  A  I  L  G  N  L </second_frame>
            <third_frame>   R  L  V  L  S  W  I  Y  V  *  *  R  E  V  D  R  R  S  C  I  S  N  I  S  T  K  S  R  W  R  R  I  L  S  P  L  H  F  N  F  H  F  S  N  L  L  H  Q  L  H  D  Q  F  V  L  F  H  Y  S  G  L  S  H  H  N  V  S  K  M  P  F  V  I  V  V  S  H  N  C  F  S  F  V  *  I  *  S  R  E  G  I  C  R  T  F  R  S  G  E  V  R  M  I  C  *  L  Y  *  H  R  S  V  K  R  Y  L  R  G  K  N  N  S  K  A  N  L  L  V  H  I  Q  S  T  K  C  I  I  S  H  I  K  Q  I  S  T  Q  V  V  L  F  E  D  I  L  T  H  E  *  G  R  I  Y  I  L  N  K  Q  E  F  V  C  L  A  L  S  W  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85737" stop="85955"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>REVDRRSCISNISTKSRWRRILSPLHFNFHFSNLLHQLHDQFVLFHYSGLSHHNVSKMPFVIVVSHNCFSFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="86544" PGL_stop="86949"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86544" e_stop="86949"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="86544" e_stop="86949" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86544" stop="86949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAAATGGAGGCTTGTAGACTATTTCTTCTTCATCATCCTCCTCAGTCACTTCACGGTCGGGGCCACTGTTATCTGCTCCCAGATCATGGGCGAGGTATTTTCCGCCCTTTGGGTCGCTATGGGTCGCCAATTCCTCGTCGAGCGCCGCGTTTCTGTCCAACAACACAGCAGTCTCGATATCTATCTTCGCCTCTCTCGCCTTTCCTTCGTGTATCTCCAAACGAAGCAAGTTCAACCTTTTCCTTAGGCTTTCGGTTTCCATCTCAACCTCCTTCTTTCTCTTTATCTGTGACGCCAGATCTTCATCCAATGTTGTGACCGCAGCTTTGTAGATCGCCGTGGTCGCGTCTACTTTGAGTCCTTCCTCCTTAACCCTCTGAATCTCTCGAGTGACTCGCTCGATC</gDNA_template>
            <first_frame> R  K  W  R  L  V  D  Y  F  F  F  I  I  L  L  S  H  F  T  V  G  A  T  V  I  C  S  Q  I  M  G  E  V  F  S  A  L  W  V  A  M  G  R  Q  F  L  V  E  R  R  V  S  V  Q  Q  H  S  S  L  D  I  Y  L  R  L  S  R  L  S  F  V  Y  L  Q  T  K  Q  V  Q  P  F  P  *  A  F  G  F  H  L  N  L  L  L  S  L  Y  L  *  R  Q  I  F  I  Q  C  C  D  R  S  F  V  D  R  R  G  R  V  Y  F  E  S  F  L  L  N  P  L  N  L  S  S  D  S  L  D  </first_frame>
            <second_frame>  G  N  G  G  L  *  T  I  S  S  S  S  S  S  S  V  T  S  R  S  G  P  L  L  S  A  P  R  S  W  A  R  Y  F  P  P  F  G  S  L  W  V  A  N  S  S  S  S  A  A  F  L  S  N  N  T  A  V  S  I  S  I  F  A  S  L  A  F  P  S  C  I  S  K  R  S  K  F  N  L  F  L  R  L  S  V  S  I  S  T  S  F  F  L  F  I  C  D  A  R  S  S  S  N  V  V  T  A  A  L  *  I  A  V  V  A  S  T  L  S  P  S  S  L  T  L  *  I  S  R  V  T  R  S  I </second_frame>
            <third_frame>   E  M  E  A  C  R  L  F  L  L  H  H  P  P  Q  S  L  H  G  R  G  H  C  Y  L  L  P  D  H  G  R  G  I  F  R  P  L  G  R  Y  G  S  P  I  P  R  R  A  P  R  F  C  P  T  T  Q  Q  S  R  Y  L  S  S  P  L  S  P  F  L  R  V  S  P  N  E  A  S  S  T  F  S  L  G  F  R  F  P  S  Q  P  P  S  F  S  L  S  V  T  P  D  L  H  P  M  L  *  P  Q  L  C  R  S  P  W  S  R  L  L  *  V  L  P  P  *  P  S  E  S  L  E  *  L  A  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86546" stop="86863"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>315</number_coding_nucleotides>
                  <number_encoded_amino_acids>105</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMEACRLFLLHHPPQSLHGRGHCYLLPDHGRGIFRPLGRYGSPIPRRAPRFCPTTQQSRYLSSPLSPFLRVSPNEASSTFSLGFRFPSQPPSFSLSVTPDLHPML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86563" stop="86877"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TISSSSSSSVTSRSGPLLSAPRSWARYFPPFGSLWVANSSSSAAFLSNNTAVSISIFASLAFPSCISKRSKFNLFLRLSVSISTSFFLFICDARSSSNVVTAAL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86544" stop="86792"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKWRLVDYFFFIILLSHFTVGATVICSQIMGEVFSALWVAMGRQFLVERRVSVQQHSSLDIYLRLSRLSFVYLQTKQVQPFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="97507" PGL_stop="97203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97507" e_stop="97203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="97507" e_stop="97203" e_length="305"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97507" stop="97203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590798" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGAGCTTTGTAACGTGGGCTTGTAACCCGAGTGGGGGCAACAATGTGGTGGAATGTTGGGTCCATCTTGATGGATGGGCTTGAAGGGCTAATGTTCTGGCCTGCCCTGTCCAAGCACAGAGTTGGGTCAAGTGGTCTATACGAAAGTATAGGCCACTTGGCCTTTAGAGTGGGATGGACTGCGTGAGGCTGGTTTCACAGAGCAACGACTAGTCCCCGCTCTGTGCAGTGGAAGGATCACGGGCTAGTGCTCTTTGAGTCCTAACAAAAACCTGATAGGTTGCCTAATTAAACCATCACTTTT</gDNA_template>
            <first_frame> A  E  L  C  N  V  G  L  *  P  E  W  G  Q  Q  C  G  G  M  L  G  P  S  *  W  M  G  L  K  G  *  C  S  G  L  P  C  P  S  T  E  L  G  Q  V  V  Y  T  K  V  *  A  T  W  P  L  E  W  D  G  L  R  E  A  G  F  T  E  Q  R  L  V  P  A  L  C  S  G  R  I  T  G  *  C  S  L  S  P  N  K  N  L  I  G  C  L  I  K  P  S  L   </first_frame>
            <second_frame>  P  S  F  V  T  W  A  C  N  P  S  G  G  N  N  V  V  E  C  W  V  H  L  D  G  W  A  *  R  A  N  V  L  A  C  P  V  Q  A  Q  S  W  V  K  W  S  I  R  K  Y  R  P  L  G  L  *  S  G  M  D  C  V  R  L  V  S  Q  S  N  D  *  S  P  L  C  A  V  E  G  S  R  A  S  A  L  *  V  L  T  K  T  *  *  V  A  *  L  N  H  H  F  </second_frame>
            <third_frame>   R  A  L  *  R  G  L  V  T  R  V  G  A  T  M  W  W  N  V  G  S  I  L  M  D  G  L  E  G  L  M  F  W  P  A  L  S  K  H  R  V  G  S  S  G  L  Y  E  S  I  G  H  L  A  F  R  V  G  W  T  A  *  G  W  F  H  R  A  T  T  S  P  R  S  V  Q  W  K  D  H  G  L  V  L  F  E  S  *  Q  K  P  D  R  L  P  N  *  T  I  T  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="103942" PGL_stop="104640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103942" e_stop="104640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="103942" e_stop="104640" e_length="699"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103942" stop="104640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGTCAGTTTATTAACCATATACTCAAATCGTTATCTGATCCAAATTTCTGACTTTTTTTTCCTTTTTCGAATCCCAATATGATTCTATTAAATCCAATCTGTGCCAAATTGCAGTGCGATTAAATTTATTATTTTTCACATTTTCTTTGTATTTTTTGAAAAAGAAGCATTAGCCTGTTCTTGAGTTCTTATCCCTTTTCTGGGTTTTGCTTTGAGAAATTTTAGTTTTTTTGGTTGATTCCTAGAACCCCTTTTGATTTTGGTTTGTGGGGTTGCATAAAAATTGAATCTTGATGTTAAAAGATTGAATCTTGATTTCTGGGTGTGTTGGGTTTTGTGCTTTTGTCAAGTTGTTGTTGGTGTTTGAGCTGAATTGACAAGATTTTGTACAAAGGGATAGGTTGAAACAGGAAAAGATTGGGAATTTATCTCTTTGACTTTCCTAATATATGAGGTATTTTCTTTGATCTAGTAGGTCTATTCTTGAACTTTAACTTAGCTTTGTTAATTTCTGGTTCAATCTGATTACTTTGAATCTTGTGAATAACCTTTGTCAGAGTATCGTTAGTTTCTGTGTTACTTTGATATTCAGAGATAGTACAGACCTTTGTTGTGCTAATCTTGTTCAATTGGTATAAGTTTAGAGCCTTTAGATTATTAGGTATTTGTGTATTGCTTGTCTTAACATTTTGCTGAGC</gDNA_template>
            <first_frame> T  S  V  Y  *  P  Y  T  Q  I  V  I  *  S  K  F  L  T  F  F  S  F  F  E  S  Q  Y  D  S  I  K  S  N  L  C  Q  I  A  V  R  L  N  L  L  F  F  T  F  S  L  Y  F  L  K  K  K  H  *  P  V  L  E  F  L  S  L  F  W  V  L  L  *  E  I  L  V  F  L  V  D  S  *  N  P  F  *  F  W  F  V  G  L  H  K  N  *  I  L  M  L  K  D  *  I  L  I  S  G  C  V  G  F  C  A  F  V  K  L  L  L  V  F  E  L  N  *  Q  D  F  V  Q  R  D  R  L  K  Q  E  K  I  G  N  L  S  L  *  L  S  *  Y  M  R  Y  F  L  *  S  S  R  S  I  L  E  L  *  L  S  F  V  N  F  W  F  N  L  I  T  L  N  L  V  N  N  L  C  Q  S  I  V  S  F  C  V  T  L  I  F  R  D  S  T  D  L  C  C  A  N  L  V  Q  L  V  *  V  *  S  L  *  I  I  R  Y  L  C  I  A  C  L  N  I  L  L  S </first_frame>
            <second_frame>  R  Q  F  I  N  H  I  L  K  S  L  S  D  P  N  F  *  L  F  F  P  F  S  N  P  N  M  I  L  L  N  P  I  C  A  K  L  Q  C  D  *  I  Y  Y  F  S  H  F  L  C  I  F  *  K  R  S  I  S  L  F  L  S  S  Y  P  F  S  G  F  C  F  E  K  F  *  F  F  W  L  I  P  R  T  P  F  D  F  G  L  W  G  C  I  K  I  E  S  *  C  *  K  I  E  S  *  F  L  G  V  L  G  F  V  L  L  S  S  C  C  W  C  L  S  *  I  D  K  I  L  Y  K  G  I  G  *  N  R  K  R  L  G  I  Y  L  F  D  F  P  N  I  *  G  I  F  F  D  L  V  G  L  F  L  N  F  N  L  A  L  L  I  S  G  S  I  *  L  L  *  I  L  *  I  T  F  V  R  V  S  L  V  S  V  L  L  *  Y  S  E  I  V  Q  T  F  V  V  L  I  L  F  N  W  Y  K  F  R  A  F  R  L  L  G  I  C  V  L  L  V  L  T  F  C  *   </second_frame>
            <third_frame>   V  S  L  L  T  I  Y  S  N  R  Y  L  I  Q  I  S  D  F  F  F  L  F  R  I  P  I  *  F  Y  *  I  Q  S  V  P  N  C  S  A  I  K  F  I  I  F  H  I  F  F  V  F  F  E  K  E  A  L  A  C  S  *  V  L  I  P  F  L  G  F  A  L  R  N  F  S  F  F  G  *  F  L  E  P  L  L  I  L  V  C  G  V  A  *  K  L  N  L  D  V  K  R  L  N  L  D  F  W  V  C  W  V  L  C  F  C  Q  V  V  V  G  V  *  A  E  L  T  R  F  C  T  K  G  *  V  E  T  G  K  D  W  E  F  I  S  L  T  F  L  I  Y  E  V  F  S  L  I  *  *  V  Y  S  *  T  L  T  *  L  C  *  F  L  V  Q  S  D  Y  F  E  S  C  E  *  P  L  S  E  Y  R  *  F  L  C  Y  F  D  I  Q  R  *  Y  R  P  L  L  C  *  S  C  S  I  G  I  S  L  E  P  L  D  Y  *  V  F  V  Y  C  L  S  *  H  F  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="105749" PGL_stop="107122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105749" e_stop="106105"/>
            <exon e_start="106979" e_stop="107122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.812" e_score="0.941"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="105749" e_stop="106105" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.812">
            <gDNA_intron_boundary i_start="106106" i_stop="106978" i_length="873"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="106979" e_stop="107122" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105749" stop="106105"/>
              <exon start="106979" stop="107122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602708" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATGAACCTCCTAGATGCTTGAATTACTTGACTTCACCTCATATTGTTATATGGAGTGCTGTGACTGCTTCTTGTGCCTTTCCTGGTCTCTTCGAAGCTCAAGAACTGATGGCAAAGGATAGAAGTGGAGATCTTGTTCCATATCATCCACCATTTCATTTGGGACCTGATGACACTTCTGGTGCATCTTCTCGCCGGTGGAGGGATGGTAGCTTGGAGGTTGATTTGCCAATGATGCAGCTAAAGGAGCTCTTCAATGTCAATCACTTCATTGTGAGCCAGGCGAATCCACATATCGCTCCTCTACTGAGGATCAAAGAGTTTGTAAGAGCTTATGGAGGCAACTTTGCTGCCAAG : CTTGCCCAGCTTGCTGAAATGGAGGTGAAGCACAGATGCCACCAGGTGTTAGAACTTGGTTTTCCCTTGGGAGGAATAGCAAAGCTTTTTGCTCAAGATTGGGAGGGTGACGTAACTGTTGTGATGCCTGCCACTCTAGCTCAG</gDNA_template>
            <first_frame> H  E  P  P  R  C  L  N  Y  L  T  S  P  H  I  V  I  W  S  A  V  T  A  S  C  A  F  P  G  L  F  E  A  Q  E  L  M  A  K  D  R  S  G  D  L  V  P  Y  H  P  P  F  H  L  G  P  D  D  T  S  G  A  S  S  R  R  W  R  D  G  S  L  E  V  D  L  P  M  M  Q  L  K  E  L  F  N  V  N  H  F  I  V  S  Q  A  N  P  H  I  A  P  L  L  R  I  K  E  F  V  R  A  Y  G  G  N  F  A  A  K  :  L  A  Q  L  A  E  M  E  V  K  H  R  C  H  Q  V  L  E  L  G  F  P  L  G  G  I  A  K  L  F  A  Q  D  W  E  G  D  V  T  V  V  M  P  A  T  L  A  Q </first_frame>
            <second_frame>  M  N  L  L  D  A  *  I  T  *  L  H  L  I  L  L  Y  G  V  L  *  L  L  L  V  P  F  L  V  S  S  K  L  K  N  *  W  Q  R  I  E  V  E  I  L  F  H  I  I  H  H  F  I  W  D  L  M  T  L  L  V  H  L  L  A  G  G  G  M  V  A  W  R  L  I  C  Q  *  C  S  *  R  S  S  S  M  S  I  T  S  L  *  A  R  R  I  H  I  S  L  L  Y  *  G  S  K  S  L  *  E  L  M  E  A  T  L  L  P  S :   L  P  S  L  L  K  W  R  *  S  T  D  A  T  R  C  *  N  L  V  F  P  W  E  E  *  Q  S  F  L  L  K  I  G  R  V  T  *  L  L  *  C  L  P  L  *  L   </second_frame>
            <third_frame>   *  T  S  *  M  L  E  L  L  D  F  T  S  Y  C  Y  M  E  C  C  D  C  F  L  C  L  S  W  S  L  R  S  S  R  T  D  G  K  G  *  K  W  R  S  C  S  I  S  S  T  I  S  F  G  T  *  *  H  F  W  C  I  F  S  P  V  E  G  W  *  L  G  G  *  F  A  N  D  A  A  K  G  A  L  Q  C  Q  S  L  H  C  E  P  G  E  S  T  Y  R  S  S  T  E  D  Q  R  V  C  K  S  L  W  R  Q  L  C  C  Q   : A  C  P  A  C  *  N  G  G  E  A  Q  M  P  P  G  V  R  T  W  F  S  L  G  R  N  S  K  A  F  C  S  R  L  G  G  *  R  N  C  C  D  A  C  H  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105749" stop="106105"/>
                    <exon start="106979" stop="107122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HEPPRCLNYLTSPHIVIWSAVTASCAFPGLFEAQELMAKDRSGDLVPYHPPFHLGPDDTSGASSRRWRDGSLEVDLPMMQLKELFNVNHFIVSQANPHIAPLLRIKEFVRAYGGNFAAKLAQLAEMEVKHRCHQVLELGFPLGGIAKLFAQDWEGDVTVVMPATLAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="107314" PGL_stop="108102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107314" e_stop="108102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="107314" e_stop="108102" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107314" stop="108102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTACTCTGGAGCTGCAAAAGGCAGCAAATCAAGGAAGACGGTGCACTTGGGAAAAACTCTCAGCCATTAAAGCTAACTGTGGAATTGAGCTTGCACTTGATGAATGTGTTGCTATTCTGAATCACATGCGTAGACTGAAAAGGAGTGCCGAGAGAGCGGCTGCTGCTTCTCACGGCTTGTCAAGCACTGTCAGATTTAATGCTTCCAGAAGAATTCCTTCTTGGAACTGCATTGCACGAGAGAATTCAACAGGTTCCCTTGAAGACTTTCTTGCGGATGTTGCTGCTTCACATCATCAAGGAGGCAGTGGTTCCGGCGCACATACCACCAGAAATTGGCGAACACACCGGAGCGCACATGATGGCAGTGACAGCGAGTCCGAAAATGTGGACCTTAACTCTTGGACAAGATCTGGTGGTCCTCTGATGAGGACAACATCTGCTGATAAGTTTATCGACTTTGTCCAGAACTTGGAGATTGGTTCACGATTGAACAAAGGATTGACTATTGACCTCAACAATCTCGTTCCTCAGATGGCTGGTAGAGACCTGTTCTCCCCGAGCCCAAGGGTATCAACTCCAGATAGAACTTCAGACACCGAATTTGATCAAAGAGACTTCAGTATTAGAGTCCCCGCGGGTAGTTCAAGCATTATGGTAGGTGAAGGTGACCTTCTACAGCCAGAAAGGACTAACAACGGTATTGTCTTCAACGTGGTAAGAAAAGGAGACGTAACCCCATCGAATAGAAGCCTCGATTCAGAAAATAACAGTTCTGTGCAGGATA</gDNA_template>
            <first_frame> P  L  L  W  S  C  K  R  Q  Q  I  K  E  D  G  A  L  G  K  N  S  Q  P  L  K  L  T  V  E  L  S  L  H  L  M  N  V  L  L  F  *  I  T  C  V  D  *  K  G  V  P  R  E  R  L  L  L  L  T  A  C  Q  A  L  S  D  L  M  L  P  E  E  F  L  L  G  T  A  L  H  E  R  I  Q  Q  V  P  L  K  T  F  L  R  M  L  L  L  H  I  I  K  E  A  V  V  P  A  H  I  P  P  E  I  G  E  H  T  G  A  H  M  M  A  V  T  A  S  P  K  M  W  T  L  T  L  G  Q  D  L  V  V  L  *  *  G  Q  H  L  L  I  S  L  S  T  L  S  R  T  W  R  L  V  H  D  *  T  K  D  *  L  L  T  S  T  I  S  F  L  R  W  L  V  E  T  C  S  P  R  A  Q  G  Y  Q  L  Q  I  E  L  Q  T  P  N  L  I  K  E  T  S  V  L  E  S  P  R  V  V  Q  A  L  W  *  V  K  V  T  F  Y  S  Q  K  G  L  T  T  V  L  S  S  T  W  *  E  K  E  T  *  P  H  R  I  E  A  S  I  Q  K  I  T  V  L  C  R  I </first_frame>
            <second_frame>  L  Y  S  G  A  A  K  G  S  K  S  R  K  T  V  H  L  G  K  T  L  S  H  *  S  *  L  W  N  *  A  C  T  *  *  M  C  C  Y  S  E  S  H  A  *  T  E  K  E  C  R  E  S  G  C  C  F  S  R  L  V  K  H  C  Q  I  *  C  F  Q  K  N  S  F  L  E  L  H  C  T  R  E  F  N  R  F  P  *  R  L  S  C  G  C  C  C  F  T  S  S  R  R  Q  W  F  R  R  T  Y  H  Q  K  L  A  N  T  P  E  R  T  *  W  Q  *  Q  R  V  R  K  C  G  P  *  L  L  D  K  I  W  W  S  S  D  E  D  N  I  C  *  *  V  Y  R  L  C  P  E  L  G  D  W  F  T  I  E  Q  R  I  D  Y  *  P  Q  Q  S  R  S  S  D  G  W  *  R  P  V  L  P  E  P  K  G  I  N  S  R  *  N  F  R  H  R  I  *  S  K  R  L  Q  Y  *  S  P  R  G  *  F  K  H  Y  G  R  *  R  *  P  S  T  A  R  K  D  *  Q  R  Y  C  L  Q  R  G  K  K  R  R  R  N  P  I  E  *  K  P  R  F  R  K  *  Q  F  C  A  G   </second_frame>
            <third_frame>   S  T  L  E  L  Q  K  A  A  N  Q  G  R  R  C  T  W  E  K  L  S  A  I  K  A  N  C  G  I  E  L  A  L  D  E  C  V  A  I  L  N  H  M  R  R  L  K  R  S  A  E  R  A  A  A  A  S  H  G  L  S  S  T  V  R  F  N  A  S  R  R  I  P  S  W  N  C  I  A  R  E  N  S  T  G  S  L  E  D  F  L  A  D  V  A  A  S  H  H  Q  G  G  S  G  S  G  A  H  T  T  R  N  W  R  T  H  R  S  A  H  D  G  S  D  S  E  S  E  N  V  D  L  N  S  W  T  R  S  G  G  P  L  M  R  T  T  S  A  D  K  F  I  D  F  V  Q  N  L  E  I  G  S  R  L  N  K  G  L  T  I  D  L  N  N  L  V  P  Q  M  A  G  R  D  L  F  S  P  S  P  R  V  S  T  P  D  R  T  S  D  T  E  F  D  Q  R  D  F  S  I  R  V  P  A  G  S  S  S  I  M  V  G  E  G  D  L  L  Q  P  E  R  T  N  N  G  I  V  F  N  V  V  R  K  G  D  V  T  P  S  N  R  S  L  D  S  E  N  N  S  S  V  Q  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107316" stop="108101"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLELQKAANQGRRCTWEKLSAIKANCGIELALDECVAILNHMRRLKRSAERAAAASHGLSSTVRFNASRRIPSWNCIARENSTGSLEDFLADVAASHHQGGSGSGAHTTRNWRTHRSAHDGSDSESENVDLNSWTRSGGPLMRTTSADKFIDFVQNLEIGSRLNKGLTIDLNNLVPQMAGRDLFSPSPRVSTPDRTSDTEFDQRDFSIRVPAGSSSIMVGEGDLLQPERTNNGIVFNVVRKGDVTPSNRSLDSENNSSVQD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="110559" PGL_stop="111578"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110559" e_stop="111578"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="110559" e_stop="111578" e_length="1020"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110559" stop="111578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTTCAAATCATTTTCTCTCACTACGAAGTTTCCTGGAAATTCACCATGGCTTTCTACCATTTAATCTCCATCTTCTTCCTCTATCTCATACACTCATCTTTTCTTGTTTTTTCATTCTCCATTTCACTTTCTCATCCTCCATAGCTATGAAGCTCCTCAAAAACTTCCCCAAAAAGCTCTTCAACTACAAAAAAACTCGATCAATTTCCAGATCTCAAACCTCATCCTTCGGTTCCTCCTCCGATTCCGATTCCCTTCCTCATCGCGGCTTCAGAAAACCAACCGGATCATCTACTCCAACTAGCGTCTTACCGAACGAAATCTCTGCTGCGGAAGTAGTTTACGCTGAGCTAATCCATGCGTTTCACATGATGGATACTGACGGCGACGGTAAGATAAGGAAGGAAGAGCTGGAAGCGATTTTAAGCAGAGTCGGGACTGAACCACCGAGTAAGGAGGAACTCATGTTGTTGCTTGAAGAAGTTGATGTTGACGGAGATGGATGTATTAGTTTACAGGAATTCGGAGCTATTAGCTCAGCGTTTGGACCGCCGGCGTGTGATTCTGAGCTGAGAGATGCTTTTGATTTCTTCGATGCCGATCACGACGGGAAGATCACGGCGGATGAGCTGTTTAGCGTGTTTAGGCAGATCGGAGATTCACGGTGCACGTTAGAGGAGTGCCGGCGTATGATAAGAGGTGTGGATAAAAATGGTGATGGGTTTGTATGCTTCGAGGACTTCTGTATTATGATGGAACAGCAGCATAGATGTTGATAAGTAATTGGTGATCGTTTGATTCTCCTTTCTTTTCTTTTTTCAATTTCGGTGAAAAAGTGTGTTTGTTTTAAGGGTGGGGATTTGATTAGAATCTAATCAACGGCTAGGATTGATCCATTTTGGAGGTTGTACCAAAGTTATTGATCTCGTAAATACATGTGAGAACAAATTCCTCCCTTTTTTACCCCTGAAACCGAAATGGAATTGGCTTATGCCTAATATCAATATCAAACGTTTAC</gDNA_template>
            <first_frame> L  F  K  S  F  S  L  T  T  K  F  P  G  N  S  P  W  L  S  T  I  *  S  P  S  S  S  S  I  S  Y  T  H  L  F  L  F  F  H  S  P  F  H  F  L  I  L  H  S  Y  E  A  P  Q  K  L  P  Q  K  A  L  Q  L  Q  K  N  S  I  N  F  Q  I  S  N  L  I  L  R  F  L  L  R  F  R  F  P  S  S  S  R  L  Q  K  T  N  R  I  I  Y  S  N  *  R  L  T  E  R  N  L  C  C  G  S  S  L  R  *  A  N  P  C  V  S  H  D  G  Y  *  R  R  R  *  D  K  E  G  R  A  G  S  D  F  K  Q  S  R  D  *  T  T  E  *  G  G  T  H  V  V  A  *  R  S  *  C  *  R  R  W  M  Y  *  F  T  G  I  R  S  Y  *  L  S  V  W  T  A  G  V  *  F  *  A  E  R  C  F  *  F  L  R  C  R  S  R  R  E  D  H  G  G  *  A  V  *  R  V  *  A  D  R  R  F  T  V  H  V  R  G  V  P  A  Y  D  K  R  C  G  *  K  W  *  W  V  C  M  L  R  G  L  L  Y  Y  D  G  T  A  A  *  M  L  I  S  N  W  *  S  F  D  S  P  F  F  S  F  F  N  F  G  E  K  V  C  L  F  *  G  W  G  F  D  *  N  L  I  N  G  *  D  *  S  I  L  E  V  V  P  K  L  L  I  S  *  I  H  V  R  T  N  S  S  L  F  Y  P  *  N  R  N  G  I  G  L  C  L  I  S  I  S  N  V  Y </first_frame>
            <second_frame>  S  S  N  H  F  L  S  L  R  S  F  L  E  I  H  H  G  F  L  P  F  N  L  H  L  L  P  L  S  H  T  L  I  F  S  C  F  F  I  L  H  F  T  F  S  S  S  I  A  M  K  L  L  K  N  F  P  K  K  L  F  N  Y  K  K  T  R  S  I  S  R  S  Q  T  S  S  F  G  S  S  S  D  S  D  S  L  P  H  R  G  F  R  K  P  T  G  S  S  T  P  T  S  V  L  P  N  E  I  S  A  A  E  V  V  Y  A  E  L  I  H  A  F  H  M  M  D  T  D  G  D  G  K  I  R  K  E  E  L  E  A  I  L  S  R  V  G  T  E  P  P  S  K  E  E  L  M  L  L  L  E  E  V  D  V  D  G  D  G  C  I  S  L  Q  E  F  G  A  I  S  S  A  F  G  P  P  A  C  D  S  E  L  R  D  A  F  D  F  F  D  A  D  H  D  G  K  I  T  A  D  E  L  F  S  V  F  R  Q  I  G  D  S  R  C  T  L  E  E  C  R  R  M  I  R  G  V  D  K  N  G  D  G  F  V  C  F  E  D  F  C  I  M  M  E  Q  Q  H  R  C  *  *  V  I  G  D  R  L  I  L  L  S  F  L  F  S  I  S  V  K  K  C  V  C  F  K  G  G  D  L  I  R  I  *  S  T  A  R  I  D  P  F  W  R  L  Y  Q  S  Y  *  S  R  K  Y  M  *  E  Q  I  P  P  F  F  T  P  E  T  E  M  E  L  A  Y  A  *  Y  Q  Y  Q  T  F   </second_frame>
            <third_frame>   L  Q  I  I  F  S  H  Y  E  V  S  W  K  F  T  M  A  F  Y  H  L  I  S  I  F  F  L  Y  L  I  H  S  S  F  L  V  F  S  F  S  I  S  L  S  H  P  P  *  L  *  S  S  S  K  T  S  P  K  S  S  S  T  T  K  K  L  D  Q  F  P  D  L  K  P  H  P  S  V  P  P  P  I  P  I  P  F  L  I  A  A  S  E  N  Q  P  D  H  L  L  Q  L  A  S  Y  R  T  K  S  L  L  R  K  *  F  T  L  S  *  S  M  R  F  T  *  W  I  L  T  A  T  V  R  *  G  R  K  S  W  K  R  F  *  A  E  S  G  L  N  H  R  V  R  R  N  S  C  C  C  L  K  K  L  M  L  T  E  M  D  V  L  V  Y  R  N  S  E  L  L  A  Q  R  L  D  R  R  R  V  I  L  S  *  E  M  L  L  I  S  S  M  P  I  T  T  G  R  S  R  R  M  S  C  L  A  C  L  G  R  S  E  I  H  G  A  R  *  R  S  A  G  V  *  *  E  V  W  I  K  M  V  M  G  L  Y  A  S  R  T  S  V  L  *  W  N  S  S  I  D  V  D  K  *  L  V  I  V  *  F  S  F  L  F  F  F  Q  F  R  *  K  S  V  F  V  L  R  V  G  I  *  L  E  S  N  Q  R  L  G  L  I  H  F  G  G  C  T  K  V  I  D  L  V  N  T  C  E  N  K  F  L  P  F  L  P  L  K  P  K  W  N  W  L  M  P  N  I  N  I  K  R  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110560" stop="111336"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSNHFLSLRSFLEIHHGFLPFNLHLLPLSHTLIFSCFFILHFTFSSSIAMKLLKNFPKKLFNYKKTRSISRSQTSSFGSSSDSDSLPHRGFRKPTGSSTPTSVLPNEISAAEVVYAELIHAFHMMDTDGDGKIRKEELEAILSRVGTEPPSKEELMLLLEEVDVDGDGCISLQEFGAISSAFGPPACDSELRDAFDFFDADHDGKITADELFSVFRQIGDSRCTLEECRRMIRGVDKNGDGFVCFEDFCIMMEQQHRC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="122095" PGL_stop="121712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122095" e_stop="121712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="122095" e_stop="121712" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122095" stop="121712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602297" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAACGGTAAATCCAGACCTATAAGGAGGAAACACAGTAATGTAAGATCGTATTTGACAAATGGTACCATTAATGTTGATTATGTCAAATCTTGTGATAATCTTACAGATCCTCTTACAAAGGCCTTAACAAGAGAAAAGGTTTGGAGCACATCGAGGGGGATGGGATTGAAGCCTACAAATTCTTGAGTCATATATGAGGAAACCCAACCTGGGGACTAGAGATCCTATAACCAGGTTCAAAGGGAAAAACTAATCATATGATGACTTGTTGTGAAAAATGCACTATTTTTTTCCCTCCCTATGATGTGAGTGCATTATTTCCTGTAGTTTGTGAAGGTTGAGTTGATAAAACTCTTAATGAATATCTGTAGCCCGTATGGGT</gDNA_template>
            <first_frame> T  T  V  N  P  D  L  *  G  G  N  T  V  M  *  D  R  I  *  Q  M  V  P  L  M  L  I  M  S  N  L  V  I  I  L  Q  I  L  L  Q  R  P  *  Q  E  K  R  F  G  A  H  R  G  G  W  D  *  S  L  Q  I  L  E  S  Y  M  R  K  P  N  L  G  T  R  D  P  I  T  R  F  K  G  K  N  *  S  Y  D  D  L  L  *  K  M  H  Y  F  F  P  S  L  *  C  E  C  I  I  S  C  S  L  *  R  L  S  *  *  N  S  *  *  I  S  V  A  R  M  G </first_frame>
            <second_frame>  Q  R  *  I  Q  T  Y  K  E  E  T  Q  *  C  K  I  V  F  D  K  W  Y  H  *  C  *  L  C  Q  I  L  *  *  S  Y  R  S  S  Y  K  G  L  N  K  R  K  G  L  E  H  I  E  G  D  G  I  E  A  Y  K  F  L  S  H  I  *  G  N  P  T  W  G  L  E  I  L  *  P  G  S  K  G  K  T  N  H  M  M  T  C  C  E  K  C  T  I  F  F  P  P  Y  D  V  S  A  L  F  P  V  V  C  E  G  *  V  D  K  T  L  N  E  Y  L  *  P  V  W   </second_frame>
            <third_frame>   N  G  K  S  R  P  I  R  R  K  H  S  N  V  R  S  Y  L  T  N  G  T  I  N  V  D  Y  V  K  S  C  D  N  L  T  D  P  L  T  K  A  L  T  R  E  K  V  W  S  T  S  R  G  M  G  L  K  P  T  N  S  *  V  I  Y  E  E  T  Q  P  G  D  *  R  S  Y  N  Q  V  Q  R  E  K  L  I  I  *  *  L  V  V  K  N  A  L  F  F  S  L  P  M  M  *  V  H  Y  F  L  *  F  V  K  V  E  L  I  K  L  L  M  N  I  C  S  P  Y  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0206B16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="134145" PGL_stop="135149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134145" e_stop="134374"/>
            <exon e_start="134842" e_stop="135149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.977" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="134145" e_stop="134374" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.977">
            <gDNA_intron_boundary i_start="134375" i_stop="134841" i_length="467"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="134842" e_stop="135149" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134145" stop="134374"/>
              <exon start="134842" stop="135149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601553" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACAGGTAGTAATACCTGTGAACTCGGTAGGGTATGAGGTTTTTTTGTTGATGTTACAATTTTTGTATAGTGGACAAGTTTCAATTGTGCCACAAAAACATGAACCAAGGCCTAATTGTGGTGAAAGAAACTGTTGGCATACACATTGCACATCAGCCGTTGATCTTGCACTTGATACACTCTCAGCCGCTAGATCTTTTGGTGTTGAACAACTTGCTTTGCTTACTCAG : AAGCAATTGACAAGCATGGTAGAGAAAACTTCAATTGAGGATGTGATGAAAGTTTTAGTTGCTTCAAGAAAACAAGACATGCCTCAACTTTGGACTACTTGTTCTCATTTGGTTGCAAAATCAGGCCTTCCACCTGAAATCCTAGCAAAACACCTTCCCATCGACGTTGTCGCGAAAATCGAGGAAATTCGCCTAAAAACTTCATTAGCGCGAAGATCCTTGATCTCTCACCATCACCAGCACGACCTAAGTTCGACCTCGGAGCTCGAGGACCAAAAGATCCGACGAATGAGACGAGCCCTAGACTC</gDNA_template>
            <first_frame> H  R  *  *  Y  L  *  T  R  *  G  M  R  F  F  C  *  C  Y  N  F  C  I  V  D  K  F  Q  L  C  H  K  N  M  N  Q  G  L  I  V  V  K  E  T  V  G  I  H  I  A  H  Q  P  L  I  L  H  L  I  H  S  Q  P  L  D  L  L  V  L  N  N  L  L  C  L  L  R :   S  N  *  Q  A  W  *  R  K  L  Q  L  R  M  *  *  K  F  *  L  L  Q  E  N  K  T  C  L  N  F  G  L  L  V  L  I  W  L  Q  N  Q  A  F  H  L  K  S  *  Q  N  T  F  P  S  T  L  S  R  K  S  R  K  F  A  *  K  L  H  *  R  E  D  P  *  S  L  T  I  T  S  T  T  *  V  R  P  R  S  S  R  T  K  R  S  D  E  *  D  E  P  *  T  </first_frame>
            <second_frame>  T  G  S  N  T  C  E  L  G  R  V  *  G  F  F  V  D  V  T  I  F  V  *  W  T  S  F  N  C  A  T  K  T  *  T  K  A  *  L  W  *  K  K  L  L  A  Y  T  L  H  I  S  R  *  S  C  T  *  Y  T  L  S  R  *  I  F  W  C  *  T  T  C  F  A  Y  S   : E  A  I  D  K  H  G  R  E  N  F  N  *  G  C  D  E  S  F  S  C  F  K  K  T  R  H  A  S  T  L  D  Y  L  F  S  F  G  C  K  I  R  P  S  T  *  N  P  S  K  T  P  S  H  R  R  C  R  E  N  R  G  N  S  P  K  N  F  I  S  A  K  I  L  D  L  S  P  S  P  A  R  P  K  F  D  L  G  A  R  G  P  K  D  P  T  N  E  T  S  P  R  L </second_frame>
            <third_frame>   Q  V  V  I  P  V  N  S  V  G  Y  E  V  F  L  L  M  L  Q  F  L  Y  S  G  Q  V  S  I  V  P  Q  K  H  E  P  R  P  N  C  G  E  R  N  C  W  H  T  H  C  T  S  A  V  D  L  A  L  D  T  L  S  A  A  R  S  F  G  V  E  Q  L  A  L  L  T  Q  :  K  Q  L  T  S  M  V  E  K  T  S  I  E  D  V  M  K  V  L  V  A  S  R  K  Q  D  M  P  Q  L  W  T  T  C  S  H  L  V  A  K  S  G  L  P  P  E  I  L  A  K  H  L  P  I  D  V  V  A  K  I  E  E  I  R  L  K  T  S  L  A  R  R  S  L  I  S  H  H  H  Q  H  D  L  S  S  T  S  E  L  E  D  Q  K  I  R  R  M  R  R  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134147" stop="134374"/>
                    <exon start="134842" stop="135147"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QVVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERNCWHTHCTSAVDLALDTLSAARSFGVEQLALLTQKQLTSMVEKTSIEDVMKVLVASRKQDMPQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEEIRLKTSLARRSLISHHHQHDLSSTSELEDQKIRRMRRALD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="-" PGL_start="135522" PGL_stop="135136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135522" e_stop="135136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="135522" e_stop="135136" e_length="387"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135522" stop="135136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCAAGACATAGACGTAGTTTGTTTGGTTCGATATGAGTTAGACCAGGGATCGCACCTTTGAATAAGAAATCGGAAGTTAGGGTTTGTAGAATGTCGAGTGGAGTGATCCCATCCATCGTTCTGACATTTGGATCTGCGTGGTGGTCTAGTAGGACTGCCACCATGTCGGGTGACACCATTTCCGATGCAATGTGGAGGGGGGTTTTGCCAGCTGGACCGGCCGGGTGGTTCACGTTGGCTGCACCGAGCTCGAGTAACGCTTTCACAACCTCCCGGCTACAATTCTCGACCGCGTAGTGTAACGCGATCGATTCATCGAGATTTAGTCCTTCTCCCATGACCATAAGTTTGACCAATTCCACGTCGGATGAGTCTAGGGCTCG</gDNA_template>
            <first_frame> *  L  K  T  *  T  *  F  V  W  F  D  M  S  *  T  R  D  R  T  F  E  *  E  I  G  S  *  G  L  *  N  V  E  W  S  D  P  I  H  R  S  D  I  W  I  C  V  V  V  *  *  D  C  H  H  V  G  *  H  H  F  R  C  N  V  E  G  G  F  A  S  W  T  G  R  V  V  H  V  G  C  T  E  L  E  *  R  F  H  N  L  P  A  T  I  L  D  R  V  V  *  R  D  R  F  I  E  I  *  S  F  S  H  D  H  K  F  D  Q  F  H  V  G  *  V  *  G  S </first_frame>
            <second_frame>  N  S  R  H  R  R  S  L  F  G  S  I  *  V  R  P  G  I  A  P  L  N  K  K  S  E  V  R  V  C  R  M  S  S  G  V  I  P  S  I  V  L  T  F  G  S  A  W  W  S  S  R  T  A  T  M  S  G  D  T  I  S  D  A  M  W  R  G  V  L  P  A  G  P  A  G  W  F  T  L  A  A  P  S  S  S  N  A  F  T  T  S  R  L  Q  F  S  T  A  *  C  N  A  I  D  S  S  R  F  S  P  S  P  M  T  I  S  L  T  N  S  T  S  D  E  S  R  A   </second_frame>
            <third_frame>   T  Q  D  I  D  V  V  C  L  V  R  Y  E  L  D  Q  G  S  H  L  *  I  R  N  R  K  L  G  F  V  E  C  R  V  E  *  S  H  P  S  F  *  H  L  D  L  R  G  G  L  V  G  L  P  P  C  R  V  T  P  F  P  M  Q  C  G  G  G  F  C  Q  L  D  R  P  G  G  S  R  W  L  H  R  A  R  V  T  L  S  Q  P  P  G  Y  N  S  R  P  R  S  V  T  R  S  I  H  R  D  L  V  L  L  P  *  P  *  V  *  P  I  P  R  R  M  S  L  G  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135482" stop="135222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRPGIAPLNKKSEVRVCRMSSGVIPSIVLTFGSAWWSSRTATMSGDTISDAMWRGVLPAGPAGWFTLAAPSSSNAFTTSRLQFSTA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0206B16.1" strand="-"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135394" stop="135179"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLDLRGGLVGLPPCRVTPFPMQCGGGFCQLDRPGGSRWLHRARVTLSQPPGYNSRPRSVTRSIHRDLVLLP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 82 chains have been computed
$ 
$ memory statistics:
$ 70896 bytes spliced alignments in total
$ 34 spliced alignments have been stored
$ 2085 bytes was the average size of a spliced alignment
$ 35072 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1402 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 99 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:21:43
-->
