<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:28:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At5g32450" ref_strand="+" ref_description="C2_At5g32450">
      <seq>agattttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgcttttagtaaagtagccaaggcagggcaagttgctggtacaaaaacgagagagaaatggaattttgcattgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagccgaatgtatgttggagttgctaagttgcctctgtcaaatagcttgggattccaataactatttccttgcacatctagaaattgggatccggtatgcagattgcagatcgtctgtgtcaaattcaagcaagttttatctgtgatgtgattcttttcactgttaatttttcttcccattttattgtggaatgtggagtggtgtggtgaatacaactatacgaggttgtgtaattcttttgtttgtaagccttcaaagtcacgataggttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagaaagatttctgatttgatgtttatattacgatgacatccatcagcatatatattcacctcttagataagtttattcatgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89325" stop="94931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89624" g_stop="89646" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="130" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="206" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="278" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="341" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="694" r_length="353" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="818" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94196" g_stop="94593" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="819" r_stop="1205" r_length="387" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="C2_At5g32450" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>1216</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="C2_At5g32450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89624" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATA-GTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCA</genome_strand>
        <mrna_strand>AGATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTTAGTAAAGTAGCCAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAGAAATGGAATTTTGCATTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGCCGAATGTATGTTGGAGTTGCTAAGTTGCCTCTGTCAAATAGCTTGGGATTCCAATAACTATTTCCTTGCACATCTAGAAATTGGGATCCGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTTATCTGTGATGTGATTCTTTTCACTGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGA----------GTGGTGTGGTGAATACAACTATACGAGGTTGTGTAATTCTTTTGTTTGTAAGCCTTCAAAGTCACGATAGGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAAAGATTTCTGA-T-TTGATGTTTATATTACGATGACATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG285-R" ref_strand="+" ref_description="TG285-R">
      <seq>ctcctatagggagacagtctgcatgcctgaagctcggtcacgagcaagaaagcaggtccttttgcttattttgcatcttctgtgatattgtttttcatctatgcgccagtgaaattttactcttctgattaacaggcttacacccatgaactagagaacaaagtttcatttcttgaagaggagaatgaaagactgaagagacagaaggtaggattgcaatcaaaataattcatgcatgaattcagtgatatcattttcttcaaacagttatacattctcattagttccatgttggttgtaataatcaatctttctctggggaagaaactatagtagctgaatctggtctatgaatgctgtgacgctctaacttctttaagttcattggctaaatctttaaatggacaagatattttccttcacaatgaaacatgctattaatcatttatgcgatcaggaggaagtacagttggtgattcatgccttcttttgtttctttttccccttaagacgattaatcaattagcagagcctttatattaacaagtgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="114010" stop="115137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114316" g_stop="114837" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="554" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="TG285-R" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="TG285-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114316" e_stop="114837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTCACGAGCAAGAAAGCAGGTCCTTTTGCTTATTTTGCATCTTCTGTGATATTGTTTTTCATCTATGCGCCAGTGAAATTTTACTCTTCTGATTAACAGGCTTACACCCATGAACTAGAGAACAAAGTTTCATTTCTTGAAGAGGAGAATGAAAGACTGAAGAGACAGAAGGTAGGATTGCAATCAAAATAATTCATGCATGAATTCAGTGATATCATTTTCTTCAAACAGTTATACATTCTCATTAGTTCCATGTTGGTTGTAATAATCAATCTTTCTCTGGGGAAGAAACTATAGTAGCTGAATCTGGTCTATGAATGCTGTGACGCTCTAACTTCTTTAAGTTCATTGGCTAAATCTTTAAATGGACAAGATATTTTCCTTCACAATGAAACATGCTATTAATCATTTATGCGATCAGGAGGAAGTACAGTTGGTGATTCATGCCTTCTTTTGTTTCTTTTTCCCCTTGAGATGATTAATCAATTAGCAGAGCCTTTATATTAACAAGTGATTTG</genome_strand>
        <mrna_strand>CTCGGTCACGAGCAAGAAAGCAGGTCCTTTTGCTTATTTTGCATCTTCTGTGATATTGTTTTTCATCTATGCGCCAGTGAAATTTTACTCTTCTGATTAACAGGCTTACACCCATGAACTAGAGAACAAAGTTTCATTTCTTGAAGAGGAGAATGAAAGACTGAAGAGACAGAAGGTAGGATTGCAATCAAAATAATTCATGCATGAATTCAGTGATATCATTTTCTTCAAACAGTTATACATTCTCATTAGTTCCATGTTGGTTGTAATAATCAATCTTTCTCTGGGGAAGAAACTATAGTAGCTGAATCTGGTCTATGAATGCTGTGACGCTCTAACTTCTTTAAGTTCATTGGCTAAATCTTTAAATGGACAAGATATTTTCCTTCACAATGAAACATGCTATTAATCATTTATGCGATCAGGAGGAAGTACAGTTGGTGATTCATGCCTTCTTTTGTTTCTTTTTCCCCTTAAGACGATTAATCAATTAGCAGAGCCTTTATATTAACAAGTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG285-F" ref_strand="+" ref_description="TG285-F">
      <seq>aagaaaccatatttaattaactcatgaaaactgaagggagctaggcaactactgaaaattgacaagagacaaccctgagtacaaaaaaaaacttcatttgaggtttgccatgtcagaagcttgtttactacacaatccaaatgaacaaagaaaataaaagttggcatggacaagcaaaagtattacctacacatctaagtttatgcaattaaaaatgagtatattagggaccaagcattgaggttgacattgaactccaaagagaaattttaacacacccttctacttatgagaccaagcaaatgttgatgccctcgatgggaaagcactaataagaacttaaataggtccctgctagccctccctcccacaatctgtgcccctgatttcttttaagtgatgtttcgtccccttgttgaacatatacagtatcaatatacaggagtatgcaataaaaagatctctgtgaaaaagagcaatgaagcaaggatttaaacagctagatagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="116185" stop="115077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115885" g_stop="115377" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="TG285-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="TG285-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115885" e_stop="115377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACCATATTTAATTAACTCATGAAAACTGAAGGGAGCTAGGCAACTACTGAAAATTGACAAGAGACAACCCTGAGTACAAAAAAAAACTTCATTTGAGGTTTGCCATGTCAGAAGCTTGTTTACTACACAATCCAAATGAACAAAGAAAATAAAAGTTGGCATGGACAAGCAAAAGTATTACCTACACATCTAAGTTTATGCAATTAAAAATGAGTATATTAGGGACCAAGCATTGAGGTTGACATTGAACTCCAAAGAGAAATTTTAACACACCCTTCTACTTATGAGACCAAGCAAATGTTGATGCCCTCGATGGGAAAGCACTAATAAGAACTTAAATAGGTCCCTGCTAGCCCTCCCTCCCACAATCTGTGCCCCTGATTTCTTTTAAGTGATGTTTCGTCCCCTTGTTGAACATATACAGTATCAATATACAGGAGTATGCAATAAAAAGATCTCTGTGAAAAAGAGCAATGAAGCAAGGATTTAAACAGCTAGATAGTT</genome_strand>
        <mrna_strand>AAGAAACCATATTTAATTAACTCATGAAAACTGAAGGGAGCTAGGCAACTACTGAAAATTGACAAGAGACAACCCTGAGTACAAAAAAAAACTTCATTTGAGGTTTGCCATGTCAGAAGCTTGTTTACTACACAATCCAAATGAACAAAGAAAATAAAAGTTGGCATGGACAAGCAAAAGTATTACCTACACATCTAAGTTTATGCAATTAAAAATGAGTATATTAGGGACCAAGCATTGAGGTTGACATTGAACTCCAAAGAGAAATTTTAACACACCCTTCTACTTATGAGACCAAGCAAATGTTGATGCCCTCGATGGGAAAGCACTAATAAGAACTTAAATAGGTCCCTGCTAGCCCTCCCTCCCACAATCTGTGCCCCTGATTTCTTTTAAGTGATGTTTCGTCCCCTTGTTGAACATATACAGTATCAATATACAGGAGTATGCAATAAAAAGATCTCTGTGAAAAAGAGCAATGAAGCAAGGATTTAAACAGCTAGATAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g56820" ref_strand="+" ref_description="C2_At3g56820">
      <seq>gaaaaagtgagagatggcaaatccaaggaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgcggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtcctttttcttgcagatgagggttttaaagggtgtgaattagtttagctagtgtagattaggaaacagtgtacataaggcatagccgctattcattggccttctttcgttctttcccttttgttttttatgaaagaaagatgtgagctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119077" stop="116210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118780" g_stop="118386" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="529" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116509" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="955" r_length="426" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="C2_At3g56820" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>946</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="C2_At3g56820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118780" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATC---A---------GGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTG-ATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAG</genome_strand>
        <mrna_strand>GAAAAAGT--GAGA-GATGGCAAATCCAAGGAGGACATCATTTTCCCCTTCCGGTAACCAGAACCACCAGCAACTTCCAATTTCCACCTCCCCATTTCAGAATCAGAATCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGCGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGT-CCTTTTTCTTGCAGATGAGGGTTTTAAAGGGTGTGAATTAGTTTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCCGCTATTCATTGGCCTTCTTTCGTTCTTTCCCTTTTGTTTTTTATGAAAGAAAGATGTGAGCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG408-R" ref_strand="+" ref_description="TG408-R">
      <seq>gccaattgtcttgaaaagcgacattgaggacattgaaatgccatttgcagctcctctttgctcctgggactgaagttaaaacattttactcacacatgaacattactgatcacagttatatggataataaggaaaaaaagtgcttatggtataaggtagttaccacagctctattctgcatgattagtaagccagttgtaattgatacctgatcaaatatgaaaaataaccacttagaccaagcaaacaacttcgagatactgaaactgcaaaagccaaacaaagttaattgagcagatatattattcataattttcatgtataggaaataggagatatcatgaaccagaaaattaagatacaactcatttacattcaacgaagaaccttagatattgagtaacaaagcataaagctaacataaacttgagaaaagagctgcaaagatgaatgaagcaaaatattataggtcatatatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="120420" stop="121500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120720" g_stop="121200" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="TG408-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="TG408-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120720" e_stop="121200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAATTGTCTTGAAAAGCGACATTGAGGACATTGAAATGCCATTTGCAGCTCCTCTTTGCTCCTGGGACTGAAGTTAAAACATTTTACTCACACATGAACATTACTGATCACAGTTATATGGATAATAAGGAAAAAAAGTGCTTATGGTATAAGGTAGTTACCACAGCTCTATTCTGCATGATTAGTAAGCCAGTTGTAATTGATACCTGATCAAATATGAAAAATAACCACTTAGACCAAGCAAACAACTTCGAGATACTGAAACTGCAAAAGCCAAACAAAGTTAATTGAGCAGATATATTATTCATAATTTTCATGTATAGGAAATAGGAGATATCATGAACCAGAAAATTAAGATACAACTCATTTACATTCAACGAAGAACCTTAGATATTGAGTAACAAAGCATAAAGCTAACATAAACTTGAGAAAAGAGCTGCAAAGATGAATGAAGCAAAATATTATAGGTCATATATTTC</genome_strand>
        <mrna_strand>GCCAATTGTCTTGAAAAGCGACATTGAGGACATTGAAATGCCATTTGCAGCTCCTCTTTGCTCCTGGGACTGAAGTTAAAACATTTTACTCACACATGAACATTACTGATCACAGTTATATGGATAATAAGGAAAAAAAGTGCTTATGGTATAAGGTAGTTACCACAGCTCTATTCTGCATGATTAGTAAGCCAGTTGTAATTGATACCTGATCAAATATGAAAAATAACCACTTAGACCAAGCAAACAACTTCGAGATACTGAAACTGCAAAAGCCAAACAAAGTTAATTGAGCAGATATATTATTCATAATTTTCATGTATAGGAAATAGGAGATATCATGAACCAGAAAATTAAGATACAACTCATTTACATTCAACGAAGAACCTTAGATATTGAGTAACAAAGCATAAAGCTAACATAAACTTGAGAAAAGAGCTGCAAAGATGAATGAAGCAAAATATTATAGGTCATATATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="TG408-F" ref_strand="+" ref_description="TG408-F">
      <seq>tttgactacttctaacatgttgcaggagacacttcacaagcataacaaaataaaacaagataaaaataactttcaagaggctgttgaaggatctccagatgaatcaaatggattaaatgtgtctcagaacataaatccttctgaacgcagagcccctagctctcaaaaaagccttctgatgaattggcccttaatgtcttctattattgtctactgtgtattccagctccacgatatagcctatttggaggtaatgtatctttctttgaaaaatcattttaatggaaaaacgggaaatccaaggaaccttctggagaattgatccttagcttgaacaaacttgtaaatatatcttactgtcgtgtgctttttcagatattttcactctgggctgttagtccaaggacccttgggggtttaagcttcacaacttctgatgttggacaagttcttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="122603" stop="121548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122303" g_stop="121848" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="TG408-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="TG408-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122303" e_stop="121848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACTACTTCTAACATGTTGCAGGAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCC</genome_strand>
        <mrna_strand>TTTGACTACTTCTAACATGTTGCAGGAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="89624" PGL_stop="94593"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89624" e_stop="89646"/>
            <exon e_start="89722" e_stop="89828"/>
            <exon e_start="89912" e_stop="89987"/>
            <exon e_start="90872" e_stop="90943"/>
            <exon e_start="91068" e_stop="91130"/>
            <exon e_start="91898" e_stop="92250"/>
            <exon e_start="93494" e_stop="93617"/>
            <exon e_start="94196" e_stop="94593"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.913"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="0.972"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="0.931"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="0.968"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="0.989"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="0.968"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="89624" e_stop="89646" e_length="23"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="89722" e_stop="89828" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89912" e_stop="89987" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="0.931">
            <gDNA_exon_boundary e_start="90872" e_stop="90943" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.968">
            <gDNA_exon_boundary e_start="91068" e_stop="91130" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="91898" e_stop="92250" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="93494" e_stop="93617" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="0.922">
            <gDNA_exon_boundary e_start="94196" e_stop="94593" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89624" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At5g32450" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCA</gDNA_template>
            <first_frame> G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  </first_frame>
            <second_frame>  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P </second_frame>
            <third_frame>   I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89626" stop="89646"/>
                    <exon start="89722" stop="89828"/>
                    <exon start="89912" stop="89987"/>
                    <exon start="90872" stop="90943"/>
                    <exon start="91068" stop="91130"/>
                    <exon start="91898" stop="92250"/>
                    <exon start="93494" stop="93617"/>
                    <exon start="94196" stop="94216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94302" stop="94502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="114316" PGL_stop="114837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114316" e_stop="114837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="114316" e_stop="114837" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114316" stop="114837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG285-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCGGTCACGAGCAAGAAAGCAGGTCCTTTTGCTTATTTTGCATCTTCTGTGATATTGTTTTTCATCTATGCGCCAGTGAAATTTTACTCTTCTGATTAACAGGCTTACACCCATGAACTAGAGAACAAAGTTTCATTTCTTGAAGAGGAGAATGAAAGACTGAAGAGACAGAAGGTAGGATTGCAATCAAAATAATTCATGCATGAATTCAGTGATATCATTTTCTTCAAACAGTTATACATTCTCATTAGTTCCATGTTGGTTGTAATAATCAATCTTTCTCTGGGGAAGAAACTATAGTAGCTGAATCTGGTCTATGAATGCTGTGACGCTCTAACTTCTTTAAGTTCATTGGCTAAATCTTTAAATGGACAAGATATTTTCCTTCACAATGAAACATGCTATTAATCATTTATGCGATCAGGAGGAAGTACAGTTGGTGATTCATGCCTTCTTTTGTTTCTTTTTCCCCTTGAGATGATTAATCAATTAGCAGAGCCTTTATATTAACAAGTGATTTG</gDNA_template>
            <first_frame> L  G  H  E  Q  E  S  R  S  F  C  L  F  C  I  F  C  D  I  V  F  H  L  C  A  S  E  I  L  L  F  *  L  T  G  L  H  P  *  T  R  E  Q  S  F  I  S  *  R  G  E  *  K  T  E  E  T  E  G  R  I  A  I  K  I  I  H  A  *  I  Q  *  Y  H  F  L  Q  T  V  I  H  S  H  *  F  H  V  G  C  N  N  Q  S  F  S  G  E  E  T  I  V  A  E  S  G  L  *  M  L  *  R  S  N  F  F  K  F  I  G  *  I  F  K  W  T  R  Y  F  P  S  Q  *  N  M  L  L  I  I  Y  A  I  R  R  K  Y  S  W  *  F  M  P  S  F  V  S  F  S  P  *  D  D  *  S  I  S  R  A  F  I  L  T  S  D  L </first_frame>
            <second_frame>  S  V  T  S  K  K  A  G  P  F  A  Y  F  A  S  S  V  I  L  F  F  I  Y  A  P  V  K  F  Y  S  S  D  *  Q  A  Y  T  H  E  L  E  N  K  V  S  F  L  E  E  E  N  E  R  L  K  R  Q  K  V  G  L  Q  S  K  *  F  M  H  E  F  S  D  I  I  F  F  K  Q  L  Y  I  L  I  S  S  M  L  V  V  I  I  N  L  S  L  G  K  K  L  *  *  L  N  L  V  Y  E  C  C  D  A  L  T  S  L  S  S  L  A  K  S  L  N  G  Q  D  I  F  L  H  N  E  T  C  Y  *  S  F  M  R  S  G  G  S  T  V  G  D  S  C  L  L  L  F  L  F  P  L  E  M  I  N  Q  L  A  E  P  L  Y  *  Q  V  I   </second_frame>
            <third_frame>   R  S  R  A  R  K  Q  V  L  L  L  I  L  H  L  L  *  Y  C  F  S  S  M  R  Q  *  N  F  T  L  L  I  N  R  L  T  P  M  N  *  R  T  K  F  H  F  L  K  R  R  M  K  D  *  R  D  R  R  *  D  C  N  Q  N  N  S  C  M  N  S  V  I  S  F  S  S  N  S  Y  T  F  S  L  V  P  C  W  L  *  *  S  I  F  L  W  G  R  N  Y  S  S  *  I  W  S  M  N  A  V  T  L  *  L  L  *  V  H  W  L  N  L  *  M  D  K  I  F  S  F  T  M  K  H  A  I  N  H  L  C  D  Q  E  E  V  Q  L  V  I  H  A  F  F  C  F  F  F  P  L  R  *  L  I  N  *  Q  S  L  Y  I  N  K  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="115885" PGL_stop="115377"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115885" e_stop="115377"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115885" e_stop="115377" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115885" stop="115377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG285-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGAAACCATATTTAATTAACTCATGAAAACTGAAGGGAGCTAGGCAACTACTGAAAATTGACAAGAGACAACCCTGAGTACAAAAAAAAACTTCATTTGAGGTTTGCCATGTCAGAAGCTTGTTTACTACACAATCCAAATGAACAAAGAAAATAAAAGTTGGCATGGACAAGCAAAAGTATTACCTACACATCTAAGTTTATGCAATTAAAAATGAGTATATTAGGGACCAAGCATTGAGGTTGACATTGAACTCCAAAGAGAAATTTTAACACACCCTTCTACTTATGAGACCAAGCAAATGTTGATGCCCTCGATGGGAAAGCACTAATAAGAACTTAAATAGGTCCCTGCTAGCCCTCCCTCCCACAATCTGTGCCCCTGATTTCTTTTAAGTGATGTTTCGTCCCCTTGTTGAACATATACAGTATCAATATACAGGAGTATGCAATAAAAAGATCTCTGTGAAAAAGAGCAATGAAGCAAGGATTTAAACAGCTAGATAGTT</gDNA_template>
            <first_frame> K  K  P  Y  L  I  N  S  *  K  L  K  G  A  R  Q  L  L  K  I  D  K  R  Q  P  *  V  Q  K  K  T  S  F  E  V  C  H  V  R  S  L  F  T  T  Q  S  K  *  T  K  K  I  K  V  G  M  D  K  Q  K  Y  Y  L  H  I  *  V  Y  A  I  K  N  E  Y  I  R  D  Q  A  L  R  L  T  L  N  S  K  E  K  F  *  H  T  L  L  L  M  R  P  S  K  C  *  C  P  R  W  E  S  T  N  K  N  L  N  R  S  L  L  A  L  P  P  T  I  C  A  P  D  F  F  *  V  M  F  R  P  L  V  E  H  I  Q  Y  Q  Y  T  G  V  C  N  K  K  I  S  V  K  K  S  N  E  A  R  I  *  T  A  R  *   </first_frame>
            <second_frame>  R  N  H  I  *  L  T  H  E  N  *  R  E  L  G  N  Y  *  K  L  T  R  D  N  P  E  Y  K  K  K  L  H  L  R  F  A  M  S  E  A  C  L  L  H  N  P  N  E  Q  R  K  *  K  L  A  W  T  S  K  S  I  T  Y  T  S  K  F  M  Q  L  K  M  S  I  L  G  T  K  H  *  G  *  H  *  T  P  K  R  N  F  N  T  P  F  Y  L  *  D  Q  A  N  V  D  A  L  D  G  K  A  L  I  R  T  *  I  G  P  C  *  P  S  L  P  Q  S  V  P  L  I  S  F  K  *  C  F  V  P  L  L  N  I  Y  S  I  N  I  Q  E  Y  A  I  K  R  S  L  *  K  R  A  M  K  Q  G  F  K  Q  L  D  S  </second_frame>
            <third_frame>   E  T  I  F  N  *  L  M  K  T  E  G  S  *  A  T  T  E  N  *  Q  E  T  T  L  S  T  K  K  N  F  I  *  G  L  P  C  Q  K  L  V  Y  Y  T  I  Q  M  N  K  E  N  K  S  W  H  G  Q  A  K  V  L  P  T  H  L  S  L  C  N  *  K  *  V  Y  *  G  P  S  I  E  V  D  I  E  L  Q  R  E  I  L  T  H  P  S  T  Y  E  T  K  Q  M  L  M  P  S  M  G  K  H  *  *  E  L  K  *  V  P  A  S  P  P  S  H  N  L  C  P  *  F  L  L  S  D  V  S  S  P  C  *  T  Y  T  V  S  I  Y  R  S  M  Q  *  K  D  L  C  E  K  E  Q  *  S  K  D  L  N  S  *  I  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="118780" PGL_stop="116509"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118780" e_stop="118386"/>
            <exon e_start="117774" e_stop="117650"/>
            <exon e_start="116934" e_stop="116509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.884"/>
          <exon-intron don_prob="0.416" acc_prob="1.000" e_score="0.992"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="118780" e_stop="118386" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="117774" e_stop="117650" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.416" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="0.934">
            <gDNA_exon_boundary e_start="116934" e_stop="116509" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118780" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g56820" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG : GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG : GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAG</gDNA_template>
            <first_frame> E  K  V  R  D  D  G  K  S  K  E  D  N  I  F  L  F  R  *  P  E  P  P  P  T  S  N  L  H  R  P  I  S  E  S  G  N  P  N  L  K  F  D  E  L  T  Q  I  L  P  Q  E  T  P  C  F  P  F  S  P  I  P  F  P  F  S  H  M  G  F  T  Q  I  P  T  S  F  N  F  *  P  S  T  R  R  V  A  C  *  G  S  I  W  V  R  S  K  C  *  S  C  Q  V  F  S  F  F  F  F  D  C  Q  R  *  T  W  M  V  D  Q  S  Y  F  P  C  P  *  F  C  H  F  R :   W  G  S  S  L  C  F  S  S  F  G  *  D  Q  I  W  W  S  *  R  Q  P  Q  T  P  Y  M  Q  *  D  I  C  Y  L  G  S  *  D  S  I  P   : G  G  K  *  C  G  R  K  R  L  R  G  S  D  N  W  C  R  *  S  C  C  C  S  Q  P  P  W  N  C  P  C  S  S  K  C  *  S  G  A  K  Y  I  L  H  G  V  P  G  *  R  N  Q  L  Q  W  L  N  D  *  F  *  C  M  E  G  S  I  S  S  H  C  Y  I  L  M  V  A  P  I  R  Q  L  K  F  N  A  F  A  S  G  W  *  F  F  L  A  D  E  G  F  E  G  C  D  *  S  S  *  C  R  L  G  N  S  V  H  K  A  *  L  L  I  I  G  L  F  L  F  F  P  F  W  V  L  *  Q  K  D  V  S  S  </first_frame>
            <second_frame>  K  K  *  E  M  M  A  N  P  R  R  T  T  F  S  S  S  G  N  Q  N  H  H  Q  L  P  I  S  T  A  P  F  Q  N  Q  G  T  Q  I  S  S  L  M  N  S  L  K  S  F  L  K  K  P  H  A  F  P  F  L  L  S  L  F  L  F  L  T  W  V  S  L  R  F  Q  H  P  S  T  S  N  P  Q  R  E  E  W  H  A  K  V  Q  S  G  S  D  Q  N  A  N  L  V  R  F  S  A  S  S  S  S  I  A  K  D  K  R  G  W  L  I  N  P  I  S  L  A  L  D  S  A  I  S   : G  G  A  A  V  C  A  S  V  H  L  G  E  I  R  S  G  G  L  R  G  N  H  R  H  H  T  C  N  E  T  F  V  I  W  G  A  K  T  V  F  R  :  V  E  N  D  A  V  E  K  G  Y  A  E  V  I  I  G  A  D  E  V  A  V  A  V  S  P  L  G  T  A  H  A  L  V  N  V  D  P  G  R  S  T  Y  F  M  G  C  Q  D  S  V  I  N  Y  N  G  S  T  T  D  F  N  V  W  K  D  L  *  V  P  I  V  I  F  S  W  L  R  Q  *  G  N  *  S  L  M  R  L  H  Q  A  G  N  F  F  L  Q  M  R  V  L  K  G  V  I  S  L  A  S  V  D  *  E  T  V  Y  I  R  H  S  C  *  S  L  A  F  F  C  S  F  P  F  G  F  Y  D  K  K  M  *  A  Q </second_frame>
            <third_frame>   K  S  E  R  *  W  Q  I  Q  G  G  Q  H  F  P  L  P  V  T  R  T  T  T  N  F  Q  S  P  P  P  H  F  R  I  R  E  P  K  S  Q  V  *  *  T  H  S  N  P  S  S  R  N  P  M  L  S  L  F  S  Y  P  F  S  F  F  S  H  G  F  H  S  D  S  N  I  L  Q  L  L  T  L  N  E  K  S  G  M  L  R  F  N  L  G  P  I  K  M  L  I  L  S  G  F  Q  L  L  L  L  R  L  P  K  I  N  V  D  G  *  S  I  L  F  P  L  P  L  I  L  P  F  Q  :  V  G  Q  Q  F  V  L  Q  F  I  W  V  R  S  D  L  V  V  L  E  A  T  T  D  T  I  H  A  M  R  H  L  L  F  G  E  L  R  Q  Y  S  G :   W  K  M  M  R  *  K  K  V  T  R  K  *  *  L  V  Q  M  K  L  L  L  Q  S  A  P  L  E  L  P  M  L  *  *  M  L  I  R  G  E  V  H  T  S  W  G  A  R  I  A  *  S  T  T  M  A  Q  R  L  I  L  M  Y  G  R  I  Y  K  F  P  L  L  Y  S  H  G  C  A  N  K  A  T  E  V  *  C  V  C  I  R  L  V  I  F  S  C  R  *  G  F  *  R  V  *  L  V  *  L  V  *  I  R  K  Q  C  T  *  G  I  A  A  N  H  W  P  F  F  V  L  S  L  L  G  F  M  T  K  R  C  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118770" stop="118386"/>
                    <exon start="117774" stop="117650"/>
                    <exon start="116934" stop="116731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMMANPRRTTFSSSGNQNHHQLPISTAPFQNQGTQISSLMNSLKSFLKKPHAFPFLLSLFLFLTWVSLRFQHPSTSNPQREEWHAKVQSGSDQNANLVRFSASSSSIAKDKRGWLINPISLALDSAISGGAAVCASVHLGEIRSGGLRGNHRHHTCNETFVIWGAKTVFRVENDAVEKGYAEVIIGADEVAVAVSPLGTAHALVNVDPGRSTYFMGCQDSVINYNGSTTDFNVWKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="120720" PGL_stop="121200"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120720" e_stop="121200"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="120720" e_stop="121200" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120720" stop="121200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG408-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCAATTGTCTTGAAAAGCGACATTGAGGACATTGAAATGCCATTTGCAGCTCCTCTTTGCTCCTGGGACTGAAGTTAAAACATTTTACTCACACATGAACATTACTGATCACAGTTATATGGATAATAAGGAAAAAAAGTGCTTATGGTATAAGGTAGTTACCACAGCTCTATTCTGCATGATTAGTAAGCCAGTTGTAATTGATACCTGATCAAATATGAAAAATAACCACTTAGACCAAGCAAACAACTTCGAGATACTGAAACTGCAAAAGCCAAACAAAGTTAATTGAGCAGATATATTATTCATAATTTTCATGTATAGGAAATAGGAGATATCATGAACCAGAAAATTAAGATACAACTCATTTACATTCAACGAAGAACCTTAGATATTGAGTAACAAAGCATAAAGCTAACATAAACTTGAGAAAAGAGCTGCAAAGATGAATGAAGCAAAATATTATAGGTCATATATTTC</gDNA_template>
            <first_frame> A  N  C  L  E  K  R  H  *  G  H  *  N  A  I  C  S  S  S  L  L  L  G  L  K  L  K  H  F  T  H  T  *  T  L  L  I  T  V  I  W  I  I  R  K  K  S  A  Y  G  I  R  *  L  P  Q  L  Y  S  A  *  L  V  S  Q  L  *  L  I  P  D  Q  I  *  K  I  T  T  *  T  K  Q  T  T  S  R  Y  *  N  C  K  S  Q  T  K  L  I  E  Q  I  Y  Y  S  *  F  S  C  I  G  N  R  R  Y  H  E  P  E  N  *  D  T  T  H  L  H  S  T  K  N  L  R  Y  *  V  T  K  H  K  A  N  I  N  L  R  K  E  L  Q  R  *  M  K  Q  N  I  I  G  H  I  F  </first_frame>
            <second_frame>  P  I  V  L  K  S  D  I  E  D  I  E  M  P  F  A  A  P  L  C  S  W  D  *  S  *  N  I  L  L  T  H  E  H  Y  *  S  Q  L  Y  G  *  *  G  K  K  V  L  M  V  *  G  S  Y  H  S  S  I  L  H  D  *  *  A  S  C  N  *  Y  L  I  K  Y  E  K  *  P  L  R  P  S  K  Q  L  R  D  T  E  T  A  K  A  K  Q  S  *  L  S  R  Y  I  I  H  N  F  H  V  *  E  I  G  D  I  M  N  Q  K  I  K  I  Q  L  I  Y  I  Q  R  R  T  L  D  I  E  *  Q  S  I  K  L  T  *  T  *  E  K  S  C  K  D  E  *  S  K  I  L  *  V  I  Y  F </second_frame>
            <third_frame>   Q  L  S  *  K  A  T  L  R  T  L  K  C  H  L  Q  L  L  F  A  P  G  T  E  V  K  T  F  Y  S  H  M  N  I  T  D  H  S  Y  M  D  N  K  E  K  K  C  L  W  Y  K  V  V  T  T  A  L  F  C  M  I  S  K  P  V  V  I  D  T  *  S  N  M  K  N  N  H  L  D  Q  A  N  N  F  E  I  L  K  L  Q  K  P  N  K  V  N  *  A  D  I  L  F  I  I  F  M  Y  R  K  *  E  I  S  *  T  R  K  L  R  Y  N  S  F  T  F  N  E  E  P  *  I  L  S  N  K  A  *  S  *  H  K  L  E  K  R  A  A  K  M  N  E  A  K  Y  Y  R  S  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120734" stop="120931"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KATLRTLKCHLQLLFAPGTEVKTFYSHMNITDHSYMDNKEKKCLWYKVVTTALFCMISKPVVIDT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="122303" PGL_stop="121848"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122303" e_stop="121848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="122303" e_stop="121848" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122303" stop="121848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="TG408-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGACTACTTCTAACATGTTGCAGGAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCC</gDNA_template>
            <first_frame> F  D  Y  F  *  H  V  A  G  D  T  S  Q  A  *  Q  N  K  T  R  *  K  *  L  S  R  G  C  *  R  I  S  R  *  I  K  W  I  K  C  V  S  E  H  K  S  F  *  T  Q  S  P  *  L  S  K  K  P  S  D  E  L  A  L  N  V  F  Y  Y  C  L  L  C  I  P  A  P  R  Y  S  L  F  G  G  N  V  S  F  F  E  K  S  F  *  W  K  N  G  K  S  K  E  P  S  G  E  L  I  L  S  L  N  K  L  V  N  I  S  Y  C  R  V  L  F  Q  I  F  S  L  W  A  V  S  P  R  T  L  G  G  L  S  F  T  T  S  D  V  G  Q  V  L  A </first_frame>
            <second_frame>  L  T  T  S  N  M  L  Q  E  T  L  H  K  H  N  K  I  K  Q  D  K  N  N  F  Q  E  A  V  E  G  S  P  D  E  S  N  G  L  N  V  S  Q  N  I  N  P  S  E  R  R  A  P  S  S  Q  K  S  L  L  M  N  W  P  L  M  S  S  I  I  V  Y  C  V  F  Q  L  H  D  I  A  Y  L  E  V  M  Y  L  S  L  K  N  H  F  N  G  K  T  G  N  P  R  N  L  L  E  N  *  S  L  A  *  T  N  L  *  I  Y  L  T  V  V  C  F  F  R  Y  F  H  S  G  L  L  V  Q  G  P  L  G  V  *  A  S  Q  L  L  M  L  D  K  F  L   </second_frame>
            <third_frame>   *  L  L  L  T  C  C  R  R  H  F  T  S  I  T  K  *  N  K  I  K  I  T  F  K  R  L  L  K  D  L  Q  M  N  Q  M  D  *  M  C  L  R  T  *  I  L  L  N  A  E  P  L  A  L  K  K  A  F  *  *  I  G  P  *  C  L  L  L  L  S  T  V  Y  S  S  S  T  I  *  P  I  W  R  *  C  I  F  L  *  K  I  I  L  M  E  K  R  E  I  Q  G  T  F  W  R  I  D  P  *  L  E  Q  T  C  K  Y  I  L  L  S  C  A  F  S  D  I  F  T  L  G  C  *  S  K  D  P  W  G  F  K  L  H  N  F  *  C  W  T  S  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122302" stop="121982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTTSNMLQETLHKHNKIKQDKNNFQEAVEGSPDESNGLNVSQNINPSERRAPSSQKSLLMNWPLMSSIIVYCVFQLHDIAYLEVMYLSLKNHFNGKTGNPRNLLEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 19 chains have been computed
$ 
$ memory statistics:
$ 12208 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2034 bytes was the average size of a spliced alignment
$ 11696 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1949 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 19 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:28:21
-->
