<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:24:39"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E595447" ref_strand="+" ref_description="SGN-E595447 [38721]">
      <seq>attggcaacttttggtcttcttcaatgagaagtccttgcttacaaatctagaaaaaggataaggaaaaggaaaaggaaaaggaaaagttagcttttatgcagtgatactcttagttggatggtggtatattcaatgtctttgttgaaaagggactctaggaacatttgtacttctaagctcctaacactcccatgacctagttactaaataatactattttttttcttggtcgttctttaacttttgtcgcaggatgtcgatgccgaagcttccatttttcacaatgccacattgcgcgagtaagctatagcacataatctctcggtctccacatcttatgtagatcatgcatagtgtttaatcatcttaacagtgtttgatttttcgaagattcaccctctttacatcctctttttaacaggctttacatgtatgtgtggattaaaatttaagcacataaatattattttcaagcccatctttactgtcaagttgcaaccttagtgatttcatcttgcctagggaagatgtgaatttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgctttgtctaaataggctgttagcttttgtggggcggatcttcgttctgctcacctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="6125" stop="4204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5776" g_stop="5225" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="602" r_length="539" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5224" i_stop="4561" i_length="664">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4560" g_stop="4504" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="662" r_length="60" r_score="0.895"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E595447" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5776" e_stop="5225"/>
          <exon e_start="4560" e_stop="4504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACAT-AATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGGTAATGGTTATTACAGACTACAGAGTACAGATTTGTTCTGAAACTAAACGGTAAGAGTGATTTCTTCATGTGGAGTTCTGCAGAAGTAAGACTACAATTTATAACCAATAATTTGTGTTTCTTCAAGTTTGTTGTTACTGTATTTCGAGCCATGTCTAATCTCCTTATATCCTGAGAAGAAAAGAAAGGGAGAATAGAAGGAGGTAGAGAGACTAGAAAGGGCTGGGGGGTGGGGAGGGGGTGTTGAGAGAATGAGAAACAGCAAGAATTACTTGTTTCTTGGAAGAGAGGTATTCTTTGGGTAATTTTTCTAGCATCAGGCACTCCTATGGAAGTGTGCTATGTTTCTGTTCTACGGTGCATCATGCATGTTTGAAGTGTTTTGTGCTAGAACCTCAAATGCTTACTGTTAGACAGGTAGGTTATAATGTTTGAAGTAGGTGTATTCTGAACTTATCAACTTATCAGATAATCAACGTATCTACCTTCTTTGCTCTAAGTTGCCCGGACTCTTCACTTTCATTATAAGTTGCTGTTTTTGTTTCCCAGTGTAAAGTATGATGAATGATCTGCTTGTTATCTAGATATCTATTATTTTTCTTACTGTTTTTCTTCATCTCCCTGACATTTATTACTATGATAATCTTCCTTTATTTCCATACAGATGC-TTGTCT-AATAGGCTG-TAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTAC</genome_strand>
        <mrna_strand>GAAAAGGAAAAGGAAAAGGAAAAGTTAGCTTTTATGCAGTGATACTCTTAGTTGGATGGTGGTATATTCAATGTCTTTGTTGA--A---A-AGGGACTCTAGGAACATTTGTACTTCTAAG--C--T-C-CTAACA-C-TCCCATGACCTAGTTACTAAATAATACTATTTTTTTTCTTGGTCGTTCTTTAACTTTTGTCGCAGGATGTCGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCACATAATCTCTCGGTCTCCACATCTTATGTAGATCATGCATAGTGTTTAATCATCTTAACAGTGTTTGATTTTTCGAAGATTCACCCTCTTTACATCCTCTTTTTAACAGGCTTTACATGTATGTGTGGATTAAAATTTAAGCACATAAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATCTTGCCTAGGGAAGATGTGAATTTACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTTTGTCTAAATAGGCTGTTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E417008" ref_strand="+" ref_description="SGN-E417008 [STM-24-G16]">
      <seq>gcagcggtcaaccttagccgagcgctcaactggagctcattggcatgcttcagtcctgttgaggttattgatgagagatgagtgtcttagtagccaattttagaaaaatggctggactggggtttgactaggttataccagctagatgaaaggtttgtaatcttgtttggctgcagcataggaaggaagaagaagttatggaaatggttagctatgttacaggactcttcattttgtcttgagtatccacgttgaatatgcatcgcacgtgtctgccttgttggattgatagcttttgcagattctcatacctcagtctcagtgatttctagtcttctttgcaaattgtctccttttatgctaaggggtgttttgcacattatttttgactaagtggtagtttgtataacaaatgtacaagattgtatgccttatattgggtaaaagaagttttggagatagtaagcaatgttgcatagagccatagactcttaatttgccttgatataccaatgttgactgggtatgacatggtaatatcatattggactatgtgtggttaaatatcattcctgactccatataacataatcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="7140" stop="5943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6243" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E417008" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E417008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAA-G--GAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAG--TCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAG</genome_strand>
        <mrna_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTCATTGGCATGCTTCAGTCCTGTTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTTAGAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGAAGTTATGGAAATGGTTAGCTATGTTACAGGACTCTTCATTTTGTC-TTGAGTATCCACGTTGAATATGCATCGCACGTGT-CTGCCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCC--TT-TTATGCTAAGGGGTGTTTTGCACATTATTTTTGACTAAGTGGTAGTTTGTATAACAAATGTACAAGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTGCATAGAGCCATAGACTCTTAATTTGCCTTGATATACCAATGTTGACTGGGTATGACATGGTAATATCATATTGGACTATGTGTGGTTAAATATCATTCCTGACTCCATATAACATAATCATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E440103" ref_strand="+" ref_description="SGN-E440103 [cSTA-15-C3]">
      <seq>gcagcggtcaaccttagccgagcgctcaactggagctcattggcatgcttcagtcctgttgaggttattgatgagagatgagtgtcttattagccaattttagaaaaatggctggactggggtttgactaggttataccagctagatgaaaggtttgtaatcttgtttggctgcagcataggaaggaagaagaagttatggaaatggttagctatgttacaggactcttcattttgtcttgagtatccacgttgaatatgcatcgcacgtgtctgccttgttggattgatagcttttgcagattctcatacctcagtctcagtgatttctagtcttctttgcaaattgtctccttttatgctaaggggtgttttgcacattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="7140" stop="6157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6840" g_stop="6457" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E440103" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E440103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6840" e_stop="6457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAA-G--GAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAG--TCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATT</genome_strand>
        <mrna_strand>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTCATTGGCATGCTTCAGTCCTGTTGAGGTTATTGATGAGAGATGAGTGTCTTATTAGCCAATTTTAGAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGAAGTTATGGAAATGGTTAGCTATGTTACAGGACTCTTCATTTTGTC-TTGAGTATCCACGTTGAATATGCATCGCACGTGT-CTGCCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCC--TT-TTATGCTAAGGGGTGTTTTGCACATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14240" stop="13034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13940" g_stop="13334" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13940" e_stop="13334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14419" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14119" g_stop="13349" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14119" e_stop="13349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14452" stop="13124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14153" g_stop="13424" g_length="730"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14153" e_stop="13424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTT</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAAGGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542858" ref_strand="+" ref_description="SGN-E542858 [TUS-64-G1](-)">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14861" stop="13157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14561" g_stop="14364" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14363" i_stop="13956" i_length="408">
            <donor d_prob="0.695" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13955" g_stop="13461" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="670" r_length="481" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E542858" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14561" e_stop="14364"/>
          <exon e_start="13955" e_stop="13461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATG</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGATTTTCAAA-CACTGAAA----ATTTTCCTTCTCNGTA-TTATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGAAC--AACAA----T---GC----CAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14564" stop="13356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14264" g_stop="13656" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14264" e_stop="13656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14452" stop="13410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14153" g_stop="13710" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14153" e_stop="13710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14709" stop="13417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14409" g_stop="13717" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14409" e_stop="13717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACC-----T--AG----GG-ATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14842" stop="14014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14543" g_stop="14314" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14543" e_stop="14314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAA---ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560954" ref_strand="+" ref_description="SGN-E560954 [20689]">
      <seq>gcacgaggctgacagtcattgatacatcaatcctcaaaactctgagaatggctatcaccccgacagttcgtcttccatggccgcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatggtttagtggtcgtcacactatcttccaggagtcagagaagggacacatattcattgacagggacggaaacgcactttcgccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcagctccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcagatttcggggaattaatctttctggtcttgatctttcgaagttggacttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="22899" stop="29475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23200" g_stop="23295" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.771"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23296" i_stop="23966" i_length="671">
            <donor d_prob="0.790" d_score="0.82"/>
            <acceptor a_prob="0.892" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23967" g_stop="24077" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="207" r_length="111" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24078" i_stop="27391" i_length="3314">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27392" g_stop="27526" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="343" r_length="136" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27527" i_stop="29014" i_length="1488">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29015" g_stop="29170" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="499" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E560954" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23200" e_stop="23295"/>
          <exon e_start="23967" e_stop="24077"/>
          <exon e_start="27392" e_stop="27526"/>
          <exon e_start="29015" e_stop="29170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTGACAGTGAGTCCATTGAATCATCAATCCTCAA-ACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGG-TTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTAT-GTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAA-GCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG</genome_strand>
        <mrna_strand>GCACGAGGCTGACAGT-CATTGATACATCAATCCTCAAAACTCTGAGAATGG-CTATCACCCCGACAGTTCGTCTTCCATGGCCGCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATA-CCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGGTTTAGTGGTCGTCACACTATCTTCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCATTGACAGGGACGGAAACGCACTTTCGCCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAGCTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311966" ref_strand="+" ref_description="SGN-E311966 [cTOA-16-H12]">
      <seq>attgaatcatcaatcctcaaactctgagaatggcctatgactccgaaagttcgtcttccacggttcgtctgaatatcggaggaaggaagttttgcactacactggataccctcacacaacgtgagccagactcgatgctcgctgctatgtttagtggtcgtcatactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcacttccaccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcaactccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgagagagtcagatttcggggaattaatctttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="22918" stop="29450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23218" g_stop="23295" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23296" i_stop="23966" i_length="671">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="0.892" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23967" g_stop="24077" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="188" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24078" i_stop="27391" i_length="3314">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27392" g_stop="27526" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="323" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27527" i_stop="29014" i_length="1488">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29015" g_stop="29150" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="459" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E311966" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23218" e_stop="23295"/>
          <exon e_start="23967" e_stop="24077"/>
          <exon e_start="27392" e_stop="27526"/>
          <exon e_start="29015" e_stop="29150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTG</genome_strand>
        <mrna_strand>ATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAGGAAGTTTTGCACTACACTGGATA-CCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E438410" ref_strand="+" ref_description="SGN-E438410 [cSTA-7-F8]">
      <seq>atcaatcctcacactctgagaatggcctatcactccgacagttcgtcttccatggttcgtctgaatatcggagggaggaagttttgcacaacactggataccctcacacaacgtgagccggactcgatgctcgctgctatgtttagtggtcgtcacactatctgccaggagtcagagaagggacacatattcgttgacagggacggaaagcactttcgccatatccttaattggttgagggatggtgtaattccacccctgaaagattctgaatatgctcagcttctgcgggaggcggagtactatcagctccttggtctagtagatggaattaaatctgccctaagtaagaggaaggaggatgaggagttgggtactgaattgacacgcattgacattatcaaatgcatacagtctgacagagtcaaatttcggggaattaatctttctggtcttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="22926" stop="29459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23226" g_stop="23295" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23296" i_stop="23966" i_length="671">
            <donor d_prob="0.790" d_score="0.94"/>
            <acceptor a_prob="0.892" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23967" g_stop="24077" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="180" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24078" i_stop="27391" i_length="3314">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27392" g_stop="27526" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="315" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27527" i_stop="29014" i_length="1488">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29015" g_stop="29159" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="460" r_length="145" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E438410" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23226" e_stop="23295"/>
          <exon e_start="23967" e_stop="24077"/>
          <exon e_start="27392" e_stop="27526"/>
          <exon e_start="29015" e_stop="29159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCGGTAAGCCTTGCTCTTTTGAATCTACTTCCCTAGGCATTTCGGGCATTAAGAATTTGTAGTGATGCTCCATATTAAGATCTAGACGAATTGATTTCCAATTCTGTAGCTACACAAGGATTGATATAAGGTTCAGTTTTAGAAGTATTACTCTTTCTTAGGTCATGAATGTATATCTCAAAAAGTTGGTTTTAGCACACAGGTTTTCCTTTTCTCATAGTACACTGAATGATGCATAAGGTACAATATTAGAAGCAGTAATCTATTTGGGTCAGAAATGAGTATAACAGTTACATTAGTTCCAATCTTAGACATCTGAGTTGACAGAAATGAGATTTCTCTTCCATTTCTTTCTACAACATAAAACAATTAAGAAACATTCTGCAAGATTTTGGAGTCTATAGACTTGTTGAATTTTGCTTAAATTAAAGTTCCAACTAAAATATTGGAGGTGGTTTCCATTTAAGTTCATCCCAGGGATATTCTCTTTTCCAGCTGGATTGCGTATTTTTTTGTATTAATTATTATGTTTAATATCTTTACTTTGTTACTTGAACATGAAAGGATAATACTGAAGAATTGTAACGCAGGAAAATGATTTTGCCTTGTCATTTTCTCACACACATCTTTTTTGGGCTGATTTTTATGAGTGATTTAAAAAATTTTCTCTAAAGGAGGAAGGAAGTTTTGCACTACACTGGATACCCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAGGTACATGTTATGCACACACTCACTTCTTTAATTACATAAGGCACATTGCAATTGTCTCTCAGATGTTGAACTACAGTTAGAGAAGAGTATCATTCATAGTTAATGAAGGAGGATGGAAGTTAGCCTGTTACTTTAATTTTGGAAATTTCAAGTATTTTCCATGACCTGAGAGAATGGGGGTTTTCTCTTATCCCTTGAAACTCTGATCTATATCATACCATATACAATGATGTGAAGTAGAGTGCTGCAAGAATTTTAAACAATTGGTTGTGCATTCCATTTGCTGCAATGGGTCAAGCAAAATCCTTGATTGGAAAAAGCAAGACGCCAAGACCACTGGTTGCACATAAAAGCACCAATTCAGATTCAGTTCCTTCTCTAGTCAGAGTTTATCTCCCAAAAGAATGGCTGTCATGCACCTGCCTCCCCCTGGAAAGGGAGCCACTTTTCGTTCTTTCATGTCTAACAAACTATTCTTCCGAGGTTTGATGGTCTCATCTATATGTCTCAACCTAAGTTAAACTTAACCCTTGTTACTCTGTTTGCTAGCCTATATAGGTTTTTGGTTTTCTGTACATCAAATCTCTAAGTTGTGAGAAACGTGCTGATTGCTTCAAGCTGTTGCACCTCTGTTACTTGTCTCAAAAAAAGAAAACTGTTGCAACAAATCAAATTGAATAGAAATTTAATGGTCCATCAGTTTTCGTCCTCTCCACCTCTTCCTCCATTTCTCCCTTCAAAATCAGGGCAAGCCTTCTTTTGGTCTTCCCCACAATTTTTTTTCTCTAAATTTAGTCAATATCTCCACTTCCCATCGTCTCTTTCCATTGTTCCTGACCTTATGCAACCTCAACAATTTCAACACCAACCTTTGATTGGATAAATGGAAGTGACCTTGCTGATCAAATCAATAAATAAATCATGTAGGAATGGGTTAAAGATTTTACTAACATATGCCTTTTTAAACAGTTCCTGGGAGTCAGAGAGAGGCTTATATTTAACTGAATAGGTTTAAGTATATATGTGAAAAGAACACCATTTTTTTGTGGTATCTAAGTAGATCTGATTGGTCAAACTGAAGAGACAAACTAAGGAGGATATACCTATCTATAAGATGAAAACATTTTTTTTATAAGGAAAATAATTTAATTGTTAGTGGGACAATCTCTCTACCTTTACAATGTAGGAATAATGTTGCGGATACAAAGAAGATTACACTGGGTATGTTGTTTTTAGAGTAGAACTCCATACCCAAGGATGTGGCCTAGTGGTCAATGAAATGGGTTGAGAACTATGAGGTCTCATGTTCAAACTCATCAGAGACACAAATCACTAGTTGTTTTCTTCTCATATATCCTAGCCTTGGCAGTCACCTGATACATGACGATGGTGGGAGGTGAAAGGTATCCTATGGAATTAGTCGAGGTGAGCGCAAGCTTGTCCAAACACCACGGTTATAAAAAAATGATTCTCTACAAAAGACTCCGATTTATCTATACATATAGGAATCTTTGGGGTGCACCAAACTCGGAGCAGATTTTGTCCCACCTCGTAACCATCAGAGTCCTTCCCCGCCTTATTGTTCATATGTTGACACTTTCCAGTAGCAAGAGTGAATGTTCTAACCTGTTCACCACCTTCAGAATTGACCCCCACAGATTCTGCAAGAAACTCCGATGTGGAACACGTAGCTGGAATGGACCCACTTCGGAATGAAAATTTTTGGCCCTTAGAGTTGTTGCAGATGAGAGGCACCTGGTGAACAACATTTAACAGGCTAATAGCTTTTCATAGTCTTTCACTAGAATGTTCTCTTGACAATTCACAACTTATTCCTAGGCTGAGTTTGGACAATATCATTTGTTATGCATAATGTAATGCCATATCATCATTCTGTTTTTAGGCTAGCTATTCTTCATTCATCGATAAACGATGTTGAACCAAATGTGAAATGTAAAGCATACATCAGAATACGATCCATGTTTATGTATCCTATGATGGATCTTATAGTAAGAGAAAAACACCTTGTTGTGTCACTGTAAAAAAGAATTAGACAAAAGAATCCAATTTGGATGTGATCCATATAAACCGATTTTTTATTTTTTGATAACTAACATTTAGAACTCCCGTTAATAAACCAAAACCATCTGATGACAAGAAGTACAAGGTGAGTAATATTTTGCTTGGAGGCCAATTGATTCGGTTTTCTTGAAATCAACGAGTGGACTTGAAACCATAGATCCATTTTTGTGATCCAGCGACTCAGACACTAATCCTTTATCTCACTCACACACTGCTGGCGAGTGATCTTTGTTATTGTGGGATTAGTCAGAATAAGGAATACTGTAGTATTCATGAACATATTTTTCATTAGTATCCCATTACTGATGTCTGATAGTTCAAAGAGAAAATGCAGCTTGCCAAAAGCTTCAATGTATGTGATAAAGAAATTAAGCAGAGTAATATGATCTTGCACAGATTAGAATATCCCTTTGTTTTTTTGATAGTTTTTTAGTGCACCCACGACTCACAAGATAGATGACTAGACCTCTTTTTTAGAGAACCATAATTTTGTGTGGGTTCTCTACTCTTTCGCATACTATATACTGGTCTTTTTACTTCAGAAGATCAATAAAATAAAAGGAAACAAGCTAAGAAAGTACCTTGAACTTCTTGTAATTTTGTATAAAATTAAAAAGCACCAATCTTTTCACCAATTACTTTATGAATCTCAATAGTTTATTCATTTCTTTGGAAATGGAGTGCTGAAATGTCAGTACAAGATGCGATTTTTAAAACAGGTTCACGTGAAACATAAACAAGCATGTACAAAAACTCCAAGGACTCTTACATTTTTGCACTTATTTTCTTTCTCTGCTCTTTTTGTGTTTTCTTTCTCTGTTGTGTGTAATTAGATGTTACATCATGTTAGTCTTGACACTAGGTCGCTCTGCTTTTGTGTCTAGTGTTCTCATAAGGTCAATGATTTTGATGTTTAGTAGTTCAAATTTGGACAGTTCTAGATAAATTGTGCAGATGCAAAGGGTCCTAAAATACTGGTTGGTTTTGGTTACCACTTACCATAATGCACTATGCATTCATCCTTATTAGGAATTAGCTCGGAGGCTTGTTCATTGGTATTAGCTGGTTCTTTAGTTTCTGGAAATGTAATTTATATCTCATTCTTGTCAGAAAATATATTTATTATCTTTGACAGATATCAAGTTCATGCTCCTTCATGTTGATCTTTGGAGAAGAGACATCTATGGTCTAGTTTTCACGACTTCATATCTCCTTTCAATGTGTTTTTGCAGGGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTTGTAAATCCATTATCCTCTTCTAGTGTTTATCGTGCACTTGTATATGTTTTGTGTTCTAAATCACTCATATTGCCATGTGAATGTGGTCATTAAGATTTAAGGGCAGATTTTGTTTGCTTGAACCATGTGCCTGTACCTTGTGGCAGTCTATGATTGGAATTGCTTTTCTTAGTTTTTCGAGCCGTGGAGATACTTTTTCTGTAACTTTTTGGTGTTTCATGTAGGTGATATACTTTTCATTCATTTGCTTATGCTTCTTAAAGACCTAGGAGAATGTTATATTTAGCCTCTTCAAATAGAACAGGACCAGGTTTTTCTTAGATCATTGAACTATTTGAGATATAGATTGAGCATGCTTGAGATTTTCTTGGTTATAAACCAATATTTCCTGAGATAGGGAACCAAAGTGCTACTTGTCATGGTTTCCAAACCATCGATATTGACACACCCACTGAATAGTTGTGCTTTATTTCTTTTGGGGAATCATTTCTTGAATATATATGTTAAATGGAAGATATAGAGATGTCAGTTTAGCCATTATACAGATGGTTTGGCATATCTTTGGGTAATGCCAAAATCTGGGAAGGAGTTGATGTTCAGCTGGAAGAGTAAAGCTCGAAGAAGAAGCCACAATGTGTGGAATGTAACTCCTCTTGCTCTAATGGGGGTCATTTGGAAAGAGAGGAATATGAGAGTTTTTGAAGGGGTGGATATGAGCTTTGTTCAATTGAGAAGTAGTCTCCCATCCTTATTTTCTTTTGGTGCACCCATGTAGTTCCTTTTTGTATGTGTTGTGATGTTTTCAAAGGTGCGCTTACGCCCTGAAGCGTAGCTCAAAACATGTTGAGCGCTTTGACTTGCTAAAATATGTGTTACAGTGTCGTCATCAAGGCTCTACAACATACTTTTTTCTTGCGAATGAGCATTTCCTGAAGAGGTGACAGTAAGACATTCATATTTCACTCTATCGTAATACAATCAATTTCTTCGTCCATATATTTGTTTTTCATGCTTAAATTATTAGTTTCTTCGTCCATATATTTTGTTTTTCATGCTTATAATTATTAGTCTTGGACTATATTTATATATATATATATATATTTGTATGTTTTCTTCATTTGTGCCTTTTCTCAATAAAACCCATGCTTTCTTTGCGCTTAAAGCCTCAACGAACCTTAGCGCTTTTTTGCACTTTTCGCTTCTGATAACATTGGTTTGTATAGAGGATTGGTTCGAAGTTGGTAACATTGAAGAGGACCATTTTCTTGTAGGTTTCTCCTTTTTGGTATGCCTCTTGTATACGGCCATGTTGGCCTTGTTATTATCAGTGATATCTTTTACTTGATAATTTTTTTTTCTTCCTTTACTAAAGAGGTATGTTGTACTGAAATGTAGCTATTTGGGAGTTACAAATATTTTCTGACAGCTAAAGTAGTTTGTGTGTCTGCGTAGTTGTTAAGAGCTCTTAGTTTACCTATTTCTTTTCAGGGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATC</genome_strand>
        <mrna_strand>ATCAATCCTCACACTCTGAGAATGGCCTATCACTCCGACAGTTCGTCTTCCATGGTTCGTCTGAATATCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAGGAAGTTTTGCACAACACTGGATA-CCCTCACACAACGTGAGCCGGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCACACTATCTGCCAGGAGTCAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACATATTCGTTGACAGGGACGGAAAGCACTTTCGCCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAGCTCCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGACAGAGTCAAATTTCGGGGAATTAATCTTTCTGGTCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549242" ref_strand="+" ref_description="SGN-E549242 [TUS-68-J20](-)">
      <seq>ccattaccatcctgttgcaagacaaagaagttgaagggcttcaggttctcaaagatgatcaatggttcagagtgcctgttgtcccatatggtttactcatcaatgttggagatcaagttgaggtaatgagcaatggcatctttaaaagcccggtgcacagggtggtgacgaatgcagaacgagaaagaaatagccttgctgtcttcattatgccagatgtacatgttgggattggaccagtagataagcttatcaacgaggaaaggccgagagggtacaaggacattaagaattatgttgctctcttcttcctaagctatcagcaggggaaaataccaatagaagcagcaaagataagccaagaatttcattagctgatgttggttccttcttttcctctatttgtatgttcactagtcgtggttgcctgtgctgcgcacgagcccaacactaagatctggacatgctctaagaagggtaagctcttgaatataagcaagacaacggattgatctacaacctattgttattcatttacgaaatatactaaatgcataatttgtaccaaaaataggagtaaggtgcgcgtacacctaaccttcctaaaccttacttgtgagactaaactgattatattattgctgtgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="30497" stop="32044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30797" g_stop="30918" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30919" i_stop="31218" i_length="300">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31219" g_stop="31744" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="648" r_length="526" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E549242" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30797" e_stop="30918"/>
          <exon e_start="31219" e_stop="31744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAGGTAAGTATAAACTAAATAATGTTGAAGGACTTGAAATGCATTGGAGTTATTTTGACTGATAATACGTCTTTTGGTAAGATGCGATTCTTTTATGAAGAGATGCAAGGGGATATCTACTCTGAAATCAGCACCTTCAATAGCGTGCCTCGAACTTATTTTTCCTATCCAAAACTCTTTTTCTTCTTCAATCATTAATTGTTGCGACTTGAATTGGTTGTTGATATGATTAGATGTTCTTCTTTAGCATCACCATGTTGTACAAACTAGTGAAGTTCTCAGAATTATTATTCCTTGCTGCAGGTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATATGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</genome_strand>
        <mrna_strand>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAG............................................................................................................................................................................................................................................................................................................GTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGATAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCTAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGTAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATTTGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E232644" ref_strand="+" ref_description="SGN-E232644 [cLEL-5-D6](-)">
      <seq>aagaaatagccttgctgtcttcattatgccagatgtacatgttgggattggaccagtagagaagcttatcaacgaggaaaggccgagagggtacaaggacattaagaattatgttgctctcttcttccaaagctatcagcaggggaaaataccaatagaagcagcaaagataagccaagaatttcattagctgatgttggttccttcttttcctctatttgtatgttcactagtcgtggttgcctgtgctgcgcacgagcccaacactaagatctggacatgctctaagaagggcaagctcttgaatataagcaagacaacggattgatctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="30981" stop="31915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31281" g_stop="31612" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="333" polyA_stop="353"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E232644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31281" e_stop="31612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTA</genome_strand>
        <mrna_strand>AAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205976" ref_strand="+" ref_description="SGN-E205976 [cLEC-20-G22]">
      <seq>ttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgtagggttgagtgttagtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="34932" stop="36854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35239" g_stop="35509" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="304" r_length="271" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35510" i_stop="36306" i_length="797">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36307" g_stop="36554" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="552" r_length="248" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E205976" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205976" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35239" e_stop="35509"/>
          <exon e_start="36307" e_stop="36554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGTAGGGGTAGACATTCGGTTTTTCGGTTCGGTTCGGTTTTTTTTTCGGTTTTCGGTTTTTGTAAATTGCGTACCGAATACCGAACCGAAATATTTCGATTCGGTTCGGTTTTTGTTAATTCGGTTCGGTTTTTATTAATTCGGCTCGGTTTTTTAATGGGCCTGTTTAGTGGGCTTTTTAAAATTTTAAACTTTACAATTTTTTCAATTTTTTGTTTCATACTTTCATTTTTCAACTTAATGGCTGCTGCTGAGTGCTGTCGCGGCTGGCGGCTGGTTGCTGCTATTTGCGGCTGGCGGGCGGCGGCTGGTTGCTGCTGTGCTGCTGGCTGCGGCTGGCTGCTGCTTCCCTTGTTGTGCTGCTGGCGGTGCTTCAGTGAAGACAAGAATGGTTGGAGCTGAAGAGTGATTGGAGTAGAAGAGGAAGAGGAGAAAAGAAGAGGAAGAAGATGAGGAGTGAATTGAAAGGAAAAAAAATCTGGTAGAAAGAGAAAGAGTCAAAGTAGGGTATTAGGGTTTTTACTTTTTTTTTAAAAAAAAAATATTTAATATTAATAATTATTAATTAATATAATATAATTTTTAAATTATTAAATTATAATATAATATTTTGGTTTAAATCGAAATACCGAATTCCAAAGTAATATGTACCGAAAACCGAATCGAAATACCAAAAAATACAAAAAATTAAACCGAATACCGAACCGAAAACCGAAATACCGAAACCAAAATTCTAAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTTTCGGTGTTTATGCCCACCCCTAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGCAAG</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427175" ref_strand="+" ref_description="SGN-E427175 [STM-47-N6]">
      <seq>gcggagagagagcgagagcgagagcgagagctgcttcatgcctctctcttcattcctccttcacaaaattcaaaatccatacttaaaaccctaggtttttttcaatcaatttcccccaattttgttgggggaattcaatttttttattgggggaaacaaacctacaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggacccacaaagtcagtggcttcctaataacagcaatgttgataaagtgacggaatttataaagaccgtctatgttgataaaaaatatgctgggggcgcagtcctctgatagacctcctagagatacccagaacttgagaaaccacgacgatgatatgaggagagcaagttcttatcattcctattctcaaagtccaccatatgactttcagtatgaagaacggcgttatgggaaaaatgcaccagcactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45715" stop="48879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46027" g_stop="46273" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="265" r_length="245" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47322" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="327" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47873" g_stop="47960" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="415" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48064" g_stop="48125" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="477" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48219" g_stop="48315" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="575" r_length="98" r_score="0.959"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48316" i_stop="48456" i_length="141">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48457" g_stop="48579" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="698" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E427175" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46027" e_stop="46273"/>
          <exon e_start="47261" e_stop="47322"/>
          <exon e_start="47873" e_stop="47960"/>
          <exon e_start="48064" e_stop="48125"/>
          <exon e_start="48219" e_stop="48315"/>
          <exon e_start="48457" e_stop="48579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTA-GTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCT-GGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAGGTACTATATCTGGAGTAATATTTTGTCTATGCAGTACTTTAGACTAGAACGTTACTTGAAACTTCTAGCTATGATTTAGTCATAATATTCAAATCAGCACTGGGTCCAGACTAATGTGTTCAATATCCATTGAGTTGTCAGAATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACT</genome_strand>
        <mrna_strand>AGAGCGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTT-CACAAAATTCAAAATCCA-TACTTAAAACCCTAGGTTTTTTTCAATCAATTTCCCCCAATTTTG-TTGGGGGAATTCAATTTTTTTATTGGGGGAAACAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCACAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGACGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATACCCAG.............................................................................................................................................AACTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGGCGTTATGGGAAAAATGCACCAGCACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E483053" ref_strand="+" ref_description="SGN-E483053 [cSTE-7-F6]">
      <seq>tggcggagagagagcgagagcgagagcgagagctgcttcatgcctctctcttcacttcctccttcacaaaattcaaaatccactacttaaaaccctaggtttttttcaactcaatttcccccaattttgttgggggaattcaatttttttattgggggaaaacaaacctacaagcatgaagtagcaggaagaagaaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggacccacaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagaccgtctatgttgataaaaaatatgctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45715" stop="48580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46027" g_stop="46273" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="275" r_length="253" r_score="0.891"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47322" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="337" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47873" g_stop="47960" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="425" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48064" g_stop="48125" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="487" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93">
            <donor d_prob="0.745" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48219" g_stop="48280" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="549" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E483053" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483053" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46027" e_stop="46273"/>
          <exon e_start="47261" e_stop="47322"/>
          <exon e_start="47873" e_stop="47960"/>
          <exon e_start="48064" e_stop="48125"/>
          <exon e_start="48219" e_stop="48280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCA-TTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTA-GTTTTTTTCAA-TCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGG-AAATAAACCTACAAGCATG-AGTAGCAGG-AG-AG-AAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGG</genome_strand>
        <mrna_strand>AGAGCGAGAGCTGCTTCATGCCTCTCTCTTCACTTCCTCCTT-CACAAAATTCAAAATCCACTACTTAAAACCCTAGGTTTTTTTCAACTCAATTTCCCCCAATTTTG-TTGGGGGAATTCAATTTTTTTATTGGGGGAAAACAAACCTACAAGCATGAAGTAGCAGGAAGAAGAAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCACAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365844" ref_strand="+" ref_description="SGN-E365844 [cLPT-8-B12]">
      <seq>tcttcattcctccttggacaaaattcaaaatccatacttaaaaccctagttttttccaatcaatttcccccaaaattgtttggggaaattcaatttttcaattgggggaaataaacctagaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctccaaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggaccctcaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagactgtctatgttgataaaaaatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45753" stop="48576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46053" g_stop="46273" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47322" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="282" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47873" g_stop="47960" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="370" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48064" g_stop="48125" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="432" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48219" g_stop="48276" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="490" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E365844" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46053" e_stop="46273"/>
          <exon e_start="47261" e_stop="47322"/>
          <exon e_start="47873" e_stop="47960"/>
          <exon e_start="48064" e_stop="48125"/>
          <exon e_start="48219" e_stop="48276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCT</genome_strand>
        <mrna_strand>TCTTCATTCCTCCTTGGACAAAATTCAAAATCCA-TACTTAAAACCCTAGTTTTTTCCAATCAATTTCCCCCAAAATTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTAGAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCAAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACTGTCTATGTTGATAAAAAATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363341" ref_strand="+" ref_description="SGN-E363341 [cLPP-4-P19]">
      <seq>tcaatttcccccaaaattgtttggggaaattcaatttttcaattgggggaaataaacctagaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctccaaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccacagagatatatttaaaaagttgggaccctcaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagactgtctatgttgataaaaaatatgctggggcgcagttctctgatagacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45813" stop="48600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46113" g_stop="46273" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47322" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="223" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47873" g_stop="47960" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="311" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48064" g_stop="48125" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="373" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48219" g_stop="48300" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="455" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E363341" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363341" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46113" e_stop="46273"/>
          <exon e_start="47261" e_stop="47322"/>
          <exon e_start="47873" e_stop="47960"/>
          <exon e_start="48064" e_stop="48125"/>
          <exon e_start="48219" e_stop="48300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTCCTCTGATAGACCT</genome_strand>
        <mrna_strand>TCAATTTCCCCCAAAATTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTAGAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCAAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCACAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACTGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTTCTCTGATAGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455034" ref_strand="+" ref_description="SGN-E455034 [cSTS-25-I19]">
      <seq>acctcctagagatacccagaacttgagaaaccacgacgatgatatgaggagagcaagttcttatcattcctattctcaaagtccaccatatgactttcagtatgaagaacggcgttatgggaaaaatgcaccagcactctctagaaagcccggatcagatcggggactttacgaaggaaaggtgtcgagtttcttgagtcctagtcgtttaagtgatcatatgtatgatgataggtttggtaatgaaggatctaatcccagagcttcagattactctgtgtctagtggaggtgatccattcaggtctgtagcacagagtcccaactttcagagaggcatcggaagtcccttaagtgacacctcaagggatatttcatatgaagatatacggcatgccaagaaagatgctggaagaatattacgagcacagagaactgcatcttctggaagttttgaatcgtttgacagcaattccttgtcattcaagtctgtaaattctgttggtttagcggatgttacttcagaatcaaagcaaacaatagagactcactctagtaaattgtcaactttcccctctttgccacaatcattgggacccggaaatccagatggccctgatctgttcaatgctccctcagttgctcaaaacgctccacctacaatttcaacaaagtctcatttgccagtgtcatcaccaaatggctccatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="48154" stop="50224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48297" g_stop="48315" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48316" i_stop="48456" i_length="141">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48457" g_stop="48867" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="430" r_length="411" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48868" i_stop="49660" i_length="793">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.956" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49661" g_stop="49923" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="693" r_length="263" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E455034" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455034" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48297" e_stop="48315"/>
          <exon e_start="48457" e_stop="48867"/>
          <exon e_start="49661" e_stop="49923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCCTAGAGATATCCAGGTACTATATCTGGAGTAATATTTTGTCTATGCAGTACTTTAGACTAGAACGTTACTTGAAACTTCTAGCTATGATTTAGTCATAATATTCAAATCAGCACTGGGTCCAGACTAATGTGTTCAATATCCATTGAGTTGTCAGAATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATAATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGTGGTGATCCATTCAGGTCAGTCGCACAGAGCCCCAACTTCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAGGTCATTTAAATTTTATTTATTTAGCTATGTTATACTTCAAATTACTTGGTTATTCATTGGTGGAGCATATCCAGCCCTGAATTAGGGGTGTTCTTAATCAGAACATGCTGTTAAGTTATCTTTTTCTCCTCTTTCTGTTTGAGTTCCTGGTTATAGTGTCCTTACTAATGAGAATATGCTGTTAAGGAATTTTTTCTTCTCTTTCTGGTTTAGTCCTTACATGTCATAAATGGGCATGATAATATGACTCTCCAAGCTAAACAAATAGGGGCGCCCATCATTGTCCATGAACAACCAATGAACCTTTGCAAAGCATGTGGGCAGAATGTAGAGAATTTTAACATTTTTATCTCAACATATTATAATAGATTGATTTCTAGGTGGAGGTGCCAAAGGTCACACAAGAAAATAGCCATTTTCATAAAAATAAAAGAAAGAAGGAAATGTGATGGGCATCACACTTGACAATCATCTGCTTGTGAGTTGAGAAGTGACAATCTTACAGAAGCTTTTAGCGAGGTGGAATAGTCAAGACTTACTGAACATATCTCTTGGGTTTACTATATTTTTTAAATTTTTTTTTCAAAAAGGGTTTCTGTTCTCGATTATGATACATATTGAAGATAAATCGTTGAGCATGTTAAATCCATGATCGATGAGATGTAATTTGGATATTATGATCATGCAAGTGGAACTCAGATTTCTTTCTATTTGATTTATAGAAGAAGGCTCCTTGTTCTTTTCACTGCAGCATTTCCTTGTGAAACTGACATGATGGTATTTGTTGAATCAGAGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATC</genome_strand>
        <mrna_strand>ACCTCCTAGAGATACCCAG.............................................................................................................................................AACTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGGCGTTATGGGAAAAATGCACCAGCACTCTCTAGAAAGCCCGGATCAGATCGGGGACTTTACGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATCATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGAGGTGATCCATTCAGGTCTGTAGCACAGAGTCCCAACTTTCAGAGAGGCATCGGAAGTCCCTTAAGTGACACCTCAAGGGATATTTCATATGAAGATATACGGCATGCCAAGAAAGATGCTGGAAGAATATTACGAGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGCATCTTCTGGAAGTTTTGAATCGTTTGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTGGTTTAGCGGATGTTACTTCAGAATCAAAGCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCCACAATCATTGGGACCCGGAAATCCAGATGGCCCTGATCTGTTCAATGCTCCCTCAGTTGCTCAAAACGCTCCACCTACAATTTCAACAAAGTCTCATTTGCCAGTGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E363664" ref_strand="+" ref_description="SGN-E363664 [cLPP-3-N5]">
      <seq>ttcagagaggcatcggaagtcccttaagtgacacctcaagggatatttcatacgaagatgtacggcatgtcaagaaagatgctggaagaatattacgagcacagagaactgcatcttctggaagttttgaatcgttcgacagcaattccttgtcatttaagtctgtaaattctgtttgtttagcggatgctgtttcagaatcaaatcaaacaatagagactcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="48464" stop="50081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48764" g_stop="48867" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48868" i_stop="49660" i_length="793">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49661" g_stop="49781" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="225" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E363664" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48764" e_stop="48867"/>
          <exon e_start="49661" e_stop="49781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAGGTCATTTAAATTTTATTTATTTAGCTATGTTATACTTCAAATTACTTGGTTATTCATTGGTGGAGCATATCCAGCCCTGAATTAGGGGTGTTCTTAATCAGAACATGCTGTTAAGTTATCTTTTTCTCCTCTTTCTGTTTGAGTTCCTGGTTATAGTGTCCTTACTAATGAGAATATGCTGTTAAGGAATTTTTTCTTCTCTTTCTGGTTTAGTCCTTACATGTCATAAATGGGCATGATAATATGACTCTCCAAGCTAAACAAATAGGGGCGCCCATCATTGTCCATGAACAACCAATGAACCTTTGCAAAGCATGTGGGCAGAATGTAGAGAATTTTAACATTTTTATCTCAACATATTATAATAGATTGATTTCTAGGTGGAGGTGCCAAAGGTCACACAAGAAAATAGCCATTTTCATAAAAATAAAAGAAAGAAGGAAATGTGATGGGCATCACACTTGACAATCATCTGCTTGTGAGTTGAGAAGTGACAATCTTACAGAAGCTTTTAGCGAGGTGGAATAGTCAAGACTTACTGAACATATCTCTTGGGTTTACTATATTTTTTAAATTTTTTTTTCAAAAAGGGTTTCTGTTCTCGATTATGATACATATTGAAGATAAATCGTTGAGCATGTTAAATCCATGATCGATGAGATGTAATTTGGATATTATGATCATGCAAGTGGAACTCAGATTTCTTTCTATTTGATTTATAGAAGAAGGCTCCTTGTTCTTTTCACTGCAGCATTTCCTTGTGAAACTGACATGATGGTATTTGTTGAATCAGAGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACT</genome_strand>
        <mrna_strand>TTCAGAGAGGCATCGGAAGTCCCTTAAGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTGCATCTTCTGGAAGTTTTGAATCGTTCGACAGCAATTCCTTGTCATTTAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250363" ref_strand="+" ref_description="SGN-E250363 [cLEG-6-M13]">
      <seq>aagttttgaatcattcgacagcaattccttgtcattcaagtctgtaaattctgtttgtttagcggatgctgtttcagaatcaaatcaaacaatagagactcactctagtaaattgtcaactttcccctctttgcaacgatcatcgggacccggaaatccagatggccctgatctattcaatgctccctcagttcctcaaaacgctccaccttcagtttcaacaaaatctcgtctgccagtgtcatcatttcagccatccatttctgctggtccaattggtaattcacatcaaccatcgctcactctcccaccttcatctttggactttttctcagaggtgccaaacctgccttcagctgtaagtgctgatgaaaaaccatcatgtgaagtcacttccaaaaatgaaggatgggcaacatttgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttaccctgaaagacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="49378" stop="50554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49678" g_stop="50254" g_length="577"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E250363" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49678" e_stop="50254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACA</genome_strand>
        <mrna_strand>AAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCCTGAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E360391" ref_strand="+" ref_description="SGN-E360391 [cLPP-8-F8]">
      <seq>atcatttcagccatccgtttctgctggtccaattggtaattcacatcaaccatcgctcactctcccaccttcatctttggactttttctcggaggtgccaaacctgccttcagctgcaagtgctgatgaaaaaccatcatgtgaagtcacttccaaaaatgaaggatgggcaacatttgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttacctgaaacgacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaacatttgatgtgcctcagcacgtgacattcactggaagtaataactttacctccaacaagattcaattaaagggtgattctcaatcgaattcggacccaactttctccgtcatgcaatggccatcacctatggaatctgcccctcatgggccagccgttagagactccactgcttgtgcattagatttatcaatgcctgctccatttcatggaggtgtgctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="49621" stop="50777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49921" g_stop="50477" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E360391" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49921" e_stop="50477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATG</genome_strand>
        <mrna_strand>ATCATTTCAGCCATCCGTTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCGGAGGTGCCAAACCTGCCTTCAGCTGCAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAACGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACATTCACTGGAAGTAATAACTTTACCTCCAACAAGATTCAATTAAAGGGTGATTCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731496" ref_strand="+" ref_description="SGN-E731496 [LA27BC06]">
      <seq>ctgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttacctgaaaagacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaacatttgatgtgcctcagcacgtgacactcactggaagtaataactttacctccaacacgattcaattaaagggtgatgctcaatcgaattcggacccaactttctccgtcatgcaatggccatcacctatggaatctgcccctcatgggccagccgttagagactccactgcttgtgcattagatttatcaatgcctgctccatttcatggaggtgtgctgaatgttgaagtaactccaagtgcaagaagtactgacttgtggagtgcctttgatgtttctaatgaccacttagctctcaagagtttgcctaatagtaaggaacaagttgtaatgaaccatgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="49798" stop="52109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50097" g_stop="50509" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50510" i_stop="50658" i_length="149">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50659" g_stop="50784" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="539" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50861" g_stop="50974" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="653" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51081" g_stop="51167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="740" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51743" g_stop="51809" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="807" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E731496" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50097" e_stop="50509"/>
          <exon e_start="50659" e_stop="50784"/>
          <exon e_start="50861" e_stop="50974"/>
          <exon e_start="51081" e_stop="51167"/>
          <exon e_start="51743" e_stop="51809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGACGTAAGTGTACTCTTATTGAGTTTGGGAAGTGGCATAAGCAATTTATGAGCTGAAAATCATCTTTTGACAACTTCTGGTTAATTTATTATTATTTTGATGTGAAACCCTTCAATTTATGAGGTCGGATAATATTTACTCGTCTTTGGCAGTTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTG</genome_strand>
        <mrna_strand>CTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC.....................................................................................................................................................TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353274" ref_strand="+" ref_description="SGN-E353274 [cTOS-14-L20]">
      <seq>taatgaccacttagctctcaagagtttgcctaatagtaaggaacaagttgtaatgaaccatgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttgttggtggtgtgaccgaatcttggtttcctcagaacccagcaacagcttatggtcctgctggacagcatgggacattatttgtttcctcacaaccagctggcaatcaaatatcgaatgtgccgacacacggtcaagttgctgctattggcggaaatccatttgcataggattgtgtattcaactagttgttggatcagctagatcatcatttcaacttttagattcctatgtatttcatgtttgtattggntaaaaaagagaatgagagacaactaggcagaaattaccaaaatttcaaggcttgccttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="50382" stop="54693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50682" g_stop="50784" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50861" g_stop="50974" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="217" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51081" g_stop="51167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="304" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51743" g_stop="51878" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="440" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51879" i_stop="51956" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51957" g_stop="51999" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="483" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52000" i_stop="54194" i_length="2195">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54195" g_stop="54393" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="682" r_length="199" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E353274" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50682" e_stop="50784"/>
          <exon e_start="50861" e_stop="50974"/>
          <exon e_start="51081" e_stop="51167"/>
          <exon e_start="51743" e_stop="51878"/>
          <exon e_start="51957" e_stop="51999"/>
          <exon e_start="54195" e_stop="54393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATGGTATGTGATGTTTACTTTTTCAAGAAGTCTTTTCTTCTGTCAAACTTTCAGCCTCTCAAATATGTCCTGTCTCTGTAGGGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATCGTGAGTCATTCTACTTTTTCCATTTTCCTTGTAACCAATGTGCAAAAAATTTCTAGTGAAATCTTATTTCACCAGCAATATCAGCTCTCTACTTGCTAGATATAACATAATGCACAGGTCCTCTACTATGAAGATGCTTGAACATATTTGACACTGACAGGATTTCCACTTAATTGCTATTTTGTTCTTGTGTGTGTATTTTGGGATTATATGATATCTTCTGTCTGGTGAGAATTTTGTGTCTCCACGAGAATGCTGGTGCTGTTGAATTGCTTATGATAAAAAGTACAAAAGTACAGTTAACATACAAGAGGTAGATGGGGATTGTTAGAGGCCGAGTTAATCTAGTGACAGTTCGTGTTGTCACCAGATTTTTTGTGGTTGATAAGTGTCTGGCTGCTGAATCTAATTGCAGGGACATATATAGTGGTTAAAATGATTATGCTGGTCTTAGAGTTGATACTGATTCTGTTAAGAAGAATCTTTCTTTGTTCCTTCTTTTTGGAGATTTCGAAAGCTTTTTCAAAGTTCGAGAGGAGTTGAACAACGTGTTCCCTTGTATCCTTTATTCTTTAGAATCTCGTGTTGGATTAACGGACAACACAGACCTATGGATAGGCTGATGGATGGAGAATTTGAGGGGCTTGAGATAGATGGTGATGGAAGAGGAAATACGACTTCATCCTCACTTTTTGTAATGTTTTCTATCTTTCAGGTATACTTTGTATGGTGGGGGTAGGGGTTTGCCCTCTTTTATGTAATTTATCACTTCATTTAAAAAAAAAAAGAACTTCAGCATCTATCTGAGGCAGTATGGTTTACGGTTTGAAGCAGTGTCAGGATTACATATGATTGGTTCACACTTGATGGGGGTTTTGAATTCTAGTTGCACACCTTCAAGGCAGCACTTCTGGAATCGTGGAGATTTTCTCAAGAGGAGAATATTTATGGAAGGTTAATATCTACGAAATATGGATCAGAAGAATAATTAATTGTTCTAAGGTGGGGCAGATTGCCATTTTCAAAATATGGTTGTAGGGTAGGATAATTCTTATAGAGTGAATTTGTAGAGGGGGGGGGGGGGGGGAATACATATGGAAATAGAAGATTTGTAGATGCACTAGATATAATGTGGGTTAGTGCTACTAGAGTACAATTCTATAGAGGTGTATATTTCGGGGGAACATCCTTGGAGAACAAGTATCTGCAAGTGGTTAGTCTTTATCCACGGCACCAATCACTTCAAGCTGGATGATTGGGGCATCATGTGGGGTCCCCTTGAAATGGGATGACTGAGTGATCATGTGAGATAAAATTTTAGGAAGACCATCCCGCATTGGTGTTTTCCTTGGGAGAAAGAGGTGTTGAGTTTATATGGAGGGAGTGGGGCTGGTATCTCTCAAATAAAATTGTATTGCATGGAGTGGGCAGAACTGGCAATAAGAAGGAGGTGCTTAAGAAAGCCTGGAAGATTTTGTTGCTGAAATATGTATGTGTGTTTTGTGGCTGCTTGGTGTGATACTGTGATGTGTGGATGCCTTCTTAAAGCAGATAACTTAAGAAAGGGAAACTACCTTTTTAGGAGTATTTCCTGAACCTAAAGACAAGAAGAAGGTAATATGAAAATTGCCACAGGATGAGAAATTTACCCCTGTAATTGTATTTGGTTAATCCTATCAGATGCCACTCAAAGAGGAGTCTTTTTTAGATACAGATGTATTATATATTCTTTGAGGAGTCACTCTCTGAGTGAAACCTGTACTGTGGTAATTTGGCAAGTCTTCAACTTTAAGGTTAGCTCGTTAGACAGAAGCTTAGTTGAACTGCACTTAAATGACTAGCCAAAACATTTTTTTTCTCAATGTTGGTAGGGAAGTAGTGGAGTCGTGCCTAAACAATCACCCATGAATCAATACACGACATCTCCTCGTTCATTAGACAAAATGGAGCTATTATTAGATATTTTATTTTTCCAGAAAACAGTAAAAATAAAAAGAAAGCATTTCATTCAATGTGTGTGTGCCCATTGTTTGAAAGATCAAAGAGATCCTTTGTATGAGCAGTCCACTAATGCAAGCTCTCATAAATATGCATGTCGGATAGTGTAAAACATCTTGAAGAGTTTGCTTTCTGTATAGTGCAGTTCTGGATTGTATCCATTATCATAACTGCTAACTAGATTGTTCCTTGTGCAGGAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTC</genome_strand>
        <mrna_strand>TAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG..............................................................................GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGGNTAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAAATTTCAAGGCTTGCCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E715827" ref_strand="+" ref_description="SGN-E715827 [FB15BE07]">
      <seq>catgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttgttggtggtgtgaccgaatcttggtttcctcagaacccagcaacagcttatggtcctgctggacagcatgggacattatttgtttcctcacaaccagctggcaatcaaatatcgaatgtgccgacacacggtcaagttgctgctattggcggaaatccatttgcataggattgtgtattcaactagttgttggatcagctagatcatcatttcaacttttagattcctatgtatttcatgtttgtattgttaaaaaaagagaatgagagacaactaggcagaaattaccaaatttcaaaggcttgccttttcttgttgaggcctacagtgtgttctgatactatggttgatgtgattatggctgaaatgttttgaggatgtccttcttggctactttggcgtattgattttcttgtcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="50440" stop="54800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50740" g_stop="50784" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50861" g_stop="50974" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="159" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51081" g_stop="51167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="246" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51743" g_stop="51878" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="382" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51879" i_stop="51956" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51957" g_stop="51999" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="425" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52000" i_stop="54194" i_length="2195">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="54195" g_stop="54500" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="731" r_length="306" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E715827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50740" e_stop="50784"/>
          <exon e_start="50861" e_stop="50974"/>
          <exon e_start="51081" e_stop="51167"/>
          <exon e_start="51743" e_stop="51878"/>
          <exon e_start="51957" e_stop="51999"/>
          <exon e_start="54195" e_stop="54500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATGGTATGTGATGTTTACTTTTTCAAGAAGTCTTTTCTTCTGTCAAACTTTCAGCCTCTCAAATATGTCCTGTCTCTGTAGGGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATCGTGAGTCATTCTACTTTTTCCATTTTCCTTGTAACCAATGTGCAAAAAATTTCTAGTGAAATCTTATTTCACCAGCAATATCAGCTCTCTACTTGCTAGATATAACATAATGCACAGGTCCTCTACTATGAAGATGCTTGAACATATTTGACACTGACAGGATTTCCACTTAATTGCTATTTTGTTCTTGTGTGTGTATTTTGGGATTATATGATATCTTCTGTCTGGTGAGAATTTTGTGTCTCCACGAGAATGCTGGTGCTGTTGAATTGCTTATGATAAAAAGTACAAAAGTACAGTTAACATACAAGAGGTAGATGGGGATTGTTAGAGGCCGAGTTAATCTAGTGACAGTTCGTGTTGTCACCAGATTTTTTGTGGTTGATAAGTGTCTGGCTGCTGAATCTAATTGCAGGGACATATATAGTGGTTAAAATGATTATGCTGGTCTTAGAGTTGATACTGATTCTGTTAAGAAGAATCTTTCTTTGTTCCTTCTTTTTGGAGATTTCGAAAGCTTTTTCAAAGTTCGAGAGGAGTTGAACAACGTGTTCCCTTGTATCCTTTATTCTTTAGAATCTCGTGTTGGATTAACGGACAACACAGACCTATGGATAGGCTGATGGATGGAGAATTTGAGGGGCTTGAGATAGATGGTGATGGAAGAGGAAATACGACTTCATCCTCACTTTTTGTAATGTTTTCTATCTTTCAGGTATACTTTGTATGGTGGGGGTAGGGGTTTGCCCTCTTTTATGTAATTTATCACTTCATTTAAAAAAAAAAAGAACTTCAGCATCTATCTGAGGCAGTATGGTTTACGGTTTGAAGCAGTGTCAGGATTACATATGATTGGTTCACACTTGATGGGGGTTTTGAATTCTAGTTGCACACCTTCAAGGCAGCACTTCTGGAATCGTGGAGATTTTCTCAAGAGGAGAATATTTATGGAAGGTTAATATCTACGAAATATGGATCAGAAGAATAATTAATTGTTCTAAGGTGGGGCAGATTGCCATTTTCAAAATATGGTTGTAGGGTAGGATAATTCTTATAGAGTGAATTTGTAGAGGGGGGGGGGGGGGGGAATACATATGGAAATAGAAGATTTGTAGATGCACTAGATATAATGTGGGTTAGTGCTACTAGAGTACAATTCTATAGAGGTGTATATTTCGGGGGAACATCCTTGGAGAACAAGTATCTGCAAGTGGTTAGTCTTTATCCACGGCACCAATCACTTCAAGCTGGATGATTGGGGCATCATGTGGGGTCCCCTTGAAATGGGATGACTGAGTGATCATGTGAGATAAAATTTTAGGAAGACCATCCCGCATTGGTGTTTTCCTTGGGAGAAAGAGGTGTTGAGTTTATATGGAGGGAGTGGGGCTGGTATCTCTCAAATAAAATTGTATTGCATGGAGTGGGCAGAACTGGCAATAAGAAGGAGGTGCTTAAGAAAGCCTGGAAGATTTTGTTGCTGAAATATGTATGTGTGTTTTGTGGCTGCTTGGTGTGATACTGTGATGTGTGGATGCCTTCTTAAAGCAGATAACTTAAGAAAGGGAAACTACCTTTTTAGGAGTATTTCCTGAACCTAAAGACAAGAAGAAGGTAATATGAAAATTGCCACAGGATGAGAAATTTACCCCTGTAATTGTATTTGGTTAATCCTATCAGATGCCACTCAAAGAGGAGTCTTTTTTAGATACAGATGTATTATATATTCTTTGAGGAGTCACTCTCTGAGTGAAACCTGTACTGTGGTAATTTGGCAAGTCTTCAACTTTAAGGTTAGCTCGTTAGACAGAAGCTTAGTTGAACTGCACTTAAATGACTAGCCAAAACATTTTTTTTCTCAATGTTGGTAGGGAAGTAGTGGAGTCGTGCCTAAACAATCACCCATGAATCAATACACGACATCTCCTCGTTCATTAGACAAAATGGAGCTATTATTAGATATTTTATTTTTCCAGAAAACAGTAAAAATAAAAAGAAAGCATTTCATTCAATGTGTGTGTGCCCATTGTTTGAAAGATCAAAGAGATCCTTTGTATGAGCAGTCCACTAATGCAAGCTCTCATAAATATGCATGTCGGATAGTGTAAAACATCTTGAAGAGTTTGCTTTCTGTATAGTGCAGTTCTGGATTGTATCCATTATCATAACTGCTAACTAGATTGTTCCTTGTGCAGGAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</genome_strand>
        <mrna_strand>CATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG..............................................................................GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738012" ref_strand="+" ref_description="SGN-E738012 [LC12AA12]">
      <seq>gactattcaaattgatctatatttcaaccctggaattttacaattgtgtttgaattgatttgtaaaggtgggatttttattctttgtcttgatctagaagggaattgattctagttcatatttttgacaagaactaggtgggtacagtgaagaaaaattagatattcagatcccatttctgaggaagttgcttcattttaggtattgggttgtgaaggattgaagttaaaatgaggaaagctgtaatctttactattgaagtgtgttataggacagttaggaatcatccattccttgtgggtatgttgtgtttcttggtatttctgtacagatcatttccttttgtgttttcaatcttggtgtctgtctcccctattcttgtttgcactgctgcactgcttggaactttactaagttatggtcagcctaatatacctgtatttgaatgggaagaaaacacaactgatcatattgtgcctttggaaacacgagatgctattcttgttgagagtgacaatagttacttcaccgagagatatagtgatcaagagagggataaagtagaccaatcaacgcgtagtgaggttcataggggtaaaagatttggtgatcattctgctctaattggtggagttttagttggtggagttactgggcaagtggcaagggagttttatgagcataaaaatgaagacaaatttagtgatgctgaacttacggaggaccagtattctcctacttcgaagggtaatgaagagagcgttgagtttgataatgacaaatcagttgattcctttgattctaggagggctaattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="55466" stop="56970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55766" g_stop="55797" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55798" i_stop="55881" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55882" g_stop="56670" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="821" r_length="789" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E738012" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55766" e_stop="55797"/>
          <exon e_start="55882" e_stop="56670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTATTCAAATTGATCTATATTTCAACCCTGGTATGCATTTTCTTTTCTTAATTCTCTTTGTTTAATCTATTATTGTTAATTCAATGTGAAAATCTTTTCTGGGTTTGTTTGCAGGAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</genome_strand>
        <mrna_strand>GACTATTCAAATTGATCTATATTTCAACCCTG....................................................................................GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369771" ref_strand="+" ref_description="SGN-E369771 [TUS-25-A3]">
      <seq>aagatacccgttttagaccttactttgttcctgatgtgatggctgctgaaggaacaagttattcaccattacaaaggcaccccagcgatctcagtgattccaaagtaagttctgttcttgaaacagagtcacagggctcaattgaagatctggaatacaagaacctcaatgaggaagatgtagaagacaagaacctgaatgaagaactggaaggcaaagacctgacagatgaacatatcttcaaggaaccaaagctgatatctaagatagagcatgctaccgaggatattggacatggaagccaatcctccgaagaagtagaatgtttggtcctaggtgcatctgataagagggatattgaactcgatgacactgatgttacactaccaaatgtggaaaatcatcatgatttggtaccaaatgtattccatgaagaaacagcagccagctccatggtacttgatccgtctaaaatttgttcaaagtcagcaacatctgaacaaaaatgcagtagtcagtcaagctcctcctcctcatcagaagtaggtgaaaagatcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57143" stop="58302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57443" g_stop="58002" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E369771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57443" e_stop="58002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</genome_strand>
        <mrna_strand>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247375" ref_strand="+" ref_description="SGN-E247375 [cLEF-46-E14]">
      <seq>aagtactccttaagtaaaccatactatgtgggtgatgtgaaggatgctgaagagaacaagttattcaccattacaaaggcaccccagcgatctcagtgattccaaagtaagttctgttcttgaaacagagtcacagggctcaattgaagatctggaatacaagaacctcaatgaggaagatgtagaagacaagaacctgaatgaagaactggaaggcaaagacctgacagatgaacatatcttcaaggaaccaaagctgatatctaagatagagcatgctaccgaggatattggacatggaagccaatcctccgaagaagtagaatgtttggtcctaggtgcatctgataagagggatattgaactcgatgacactgatgttacactaccaaatgtggaaaatcatcatgatttggtaccaaatgtattccatgaagaaacagcagccagctccatggtacttgatccgtctaaaatttgttcaaagtcagcaacatctgaacaaaaatgcagtagtcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57174" stop="58261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57459" g_stop="57962" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="522" r_length="505" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E247375" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57459" e_stop="57962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAG-GAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTC</genome_strand>
        <mrna_strand>ACCATACTATGTGGGTGATGTGAAGGATGCTGAAGAGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537865" ref_strand="+" ref_description="SGN-E537865 [TUS-56-K24]">
      <seq>tggtgagatcaagttcagaggaatcgacgtgccatgttgaaaccatctctgagcatccttcgccgaatgtgtcagatctgaacatcacaagcagttcagtggaggagagttcacatttggaacctatttatgatgccagtcctccttcaattaagaaaaatacttcttcctcctcaattgcttcagatctgcttctagaatctgaaaccgggcatgcctctgagagggaacctgtggcaaataatcgagacattgagaagtccattccgacgaaggaacaaatattttcatcagcagattccaaagaattgcggctgagggaggcaataactgacaaacatgagcttgatgttgcaaagttggagatatcaaacaacgatgaagtctttggcagtgcaagtgctcttccggtgcctgtagcagatagtcagacatctattgattcgaagtcttccacaaaagaggcacctgtttcaacggagaaagcaaggaccacagaaagcttgaatgtgccaaaagttcaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57716" stop="60835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58016" g_stop="58476" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58477" i_stop="60469" i_length="1993">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60470" g_stop="60535" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="527" r_length="66" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E537865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E537865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58016" e_stop="58476"/>
          <exon e_start="60470" e_stop="60535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAAGTAAGTAATTAGTATATGTCCTATTCAGTACTATAAATTGCAAAAACTTTTATCATGCATATTCTTTAATCTCTTTAAAGATGAAGAGAGTTATCATGCATATCCTTTTACAGATGAACAGAGTTATCATGCATATTCTTTAATCTATTTGGATTAAATTATACCAAGATCTTAGTTTTTATCATGTTTTATATACTTTATTTAGCTTTTCTCTTAAAAATGTTTCTTTATTTGAGATAATTTAAAATTTATTTTTATAAATCTTTTTTTAATTCTCCATTACTTAATCCAATTATGTTTAATGGCATATGATGATAAAAACCAAAGACTAAGTTGGATGTGAAGTGATGAAGTATAGGCCAAAAGAACTGTTGGAAACAAATCATGTTCCAATTAACCTAATATATTGTTTAGATTATACATCTCAAATTCTTTGAATCTCAACCATAGTATTCATCCAATCCTACAATTCGAGATGCTTTTGTTAAACTGGTTGAATGTGATCTCTAAAGTCGACTGGTAACTCATAGTCTCATACTGGTAGGACTGAAAATAACTCTCTCTCCTCCAATCCTATTTTTTCTAGTGCTTATCTACTAGTTAAACAGTACGAATGGAGTGACAAACTCCGTGAGTTCGGAATTTAAATAAGTCACAAAAAAATAAAATTGACCAAAATAATCCTTTATTTTAGAAAGTAACTAAAATAGGCTTAGTGGAAGAAAAAATTTCATTTCCAATATTCCAAACATTTTCCGTTAGTCCCATAACGTTTATAATTTAATATATAATGGAACTATTTCTTACACTTTATTTATATCTTCTACACAATCTAAATCTAGAAAATTATCTTGTTCAGTTATTGGTTTAGGTGTCCATTTTTTATTCATTGTATCTTTAAATATTGAATATATTTGTATTCTATTTTAGATATATTATCTATTAATTGATCTAAGTCGGTCAATGATTTATCACTCTCCAAAATTTACTTGTCCTTGTGATAAAAATGAAGTAGGTATTTTCTGACTATAATCATAATAATACTATTTATACCCCATTCTTTTATAAATTGGTGAAAGAAATATATGATATTTGACATTAATTGAATATTTAGAATTGTGTTTGGGAGGACAATTATAATAAACGGTATTTCCATCATGTATAATTTCGCCATCCTAATAAATCGAAACTCTAACTTTTGGTTAAGAAGACATTATTTTGTGATTGAAATGAAGAATAATAGAAAACTAAAGATGTTGAATGTGCTATGTCTGAATGTCTTTAAATAGAGCTTGGATGAGCTTTCAGAATAAAAAAAATAAAAATACATAGTGTAATAACTTTTTTATTTTTATGATATGTCAAATCAATATAATTGTCTGACAAACACTACAAAAACATCATAAGGAGAGCAAAACTTGAAAAATATTCCTCTTTGTAAAATGTAAGTTTTTCTTCCGCTTTATAAAGTGCAAGAAAAAGTTGAATTTTCAAAGGGCAAGAAAAACTTACAATTTATAAAGTGTAAGAAATAATTCCGTTATATATTAGAATATACTCGTTACGGACTAACGGAAAACGTTTGGAATATTGGATAAAGTGGAATTTTTTCTTCCACTAAGCCTATTTTAGTTACTTCCTAAAATAGTGGCTTATATTGGTCAATTTTATTTTTTTGTGGCTTATTTAGGTTCCGAACTCTTCAATTGAAGAGGTTTGGGACAATACTCCTACTTATGACAGTCATCATCATTCATAATCAAAGGCCAGCTAATGAATTAAACCATAATTATAGCTATTTATAGTAACTACAAGAAAAGCTAAGATATGACTAAAATGGCCGTTACACCTCAAATTCTGATTCCTTTCTTGCTCTCAAAGCTTTTGATGTTAGGTTTGAAACATGGGAGTTATCAGTATAGTTCAACCTGTACTATGTCTTCGCATTTATTTGGATTAAATGAGTCTAAGTGAATCTAATTATGATATACAGGAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAA</genome_strand>
        <mrna_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGCCAAAAGTTCAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E265370" ref_strand="+" ref_description="SGN-E265370 [cLEI-9-E5]">
      <seq>ggtgagatcaatttcagaggaatcgacgtgccatgttgggaccatctctgagcatccttcgccgaatgtgtcagatctgaacatcacaagcagttcagtggaggagagttcacatttggaacctatttatgatgccagtcctccttcaattaagaaaaatacttcttcctcctcaattgcttcagatctgcttctagaatctgaaaccgggcatgcctctgagagggaacctgtggcaaataatcgagacattgagaagtccattccgacgaaggaacaaatattttcatcagcagattccaaagaattgcggctgagggaggcaataactgacaaacatgagcttgatgttgcaaaggtggagatatcaaacaacgatgaagtctttggcagtgcaagtgctcttccggtgcctgtagcagatagtcagacatctattgattcgaagtcttccacaaaagaggcacctgtttcaacggagaaagcaaggaccacagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57717" stop="60810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58017" g_stop="58476" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58477" i_stop="60469" i_length="1993">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60470" g_stop="60510" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="501" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E265370" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58017" e_stop="58476"/>
          <exon e_start="60470" e_stop="60510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAAGTAAGTAATTAGTATATGTCCTATTCAGTACTATAAATTGCAAAAACTTTTATCATGCATATTCTTTAATCTCTTTAAAGATGAAGAGAGTTATCATGCATATCCTTTTACAGATGAACAGAGTTATCATGCATATTCTTTAATCTATTTGGATTAAATTATACCAAGATCTTAGTTTTTATCATGTTTTATATACTTTATTTAGCTTTTCTCTTAAAAATGTTTCTTTATTTGAGATAATTTAAAATTTATTTTTATAAATCTTTTTTTAATTCTCCATTACTTAATCCAATTATGTTTAATGGCATATGATGATAAAAACCAAAGACTAAGTTGGATGTGAAGTGATGAAGTATAGGCCAAAAGAACTGTTGGAAACAAATCATGTTCCAATTAACCTAATATATTGTTTAGATTATACATCTCAAATTCTTTGAATCTCAACCATAGTATTCATCCAATCCTACAATTCGAGATGCTTTTGTTAAACTGGTTGAATGTGATCTCTAAAGTCGACTGGTAACTCATAGTCTCATACTGGTAGGACTGAAAATAACTCTCTCTCCTCCAATCCTATTTTTTCTAGTGCTTATCTACTAGTTAAACAGTACGAATGGAGTGACAAACTCCGTGAGTTCGGAATTTAAATAAGTCACAAAAAAATAAAATTGACCAAAATAATCCTTTATTTTAGAAAGTAACTAAAATAGGCTTAGTGGAAGAAAAAATTTCATTTCCAATATTCCAAACATTTTCCGTTAGTCCCATAACGTTTATAATTTAATATATAATGGAACTATTTCTTACACTTTATTTATATCTTCTACACAATCTAAATCTAGAAAATTATCTTGTTCAGTTATTGGTTTAGGTGTCCATTTTTTATTCATTGTATCTTTAAATATTGAATATATTTGTATTCTATTTTAGATATATTATCTATTAATTGATCTAAGTCGGTCAATGATTTATCACTCTCCAAAATTTACTTGTCCTTGTGATAAAAATGAAGTAGGTATTTTCTGACTATAATCATAATAATACTATTTATACCCCATTCTTTTATAAATTGGTGAAAGAAATATATGATATTTGACATTAATTGAATATTTAGAATTGTGTTTGGGAGGACAATTATAATAAACGGTATTTCCATCATGTATAATTTCGCCATCCTAATAAATCGAAACTCTAACTTTTGGTTAAGAAGACATTATTTTGTGATTGAAATGAAGAATAATAGAAAACTAAAGATGTTGAATGTGCTATGTCTGAATGTCTTTAAATAGAGCTTGGATGAGCTTTCAGAATAAAAAAAATAAAAATACATAGTGTAATAACTTTTTTATTTTTATGATATGTCAAATCAATATAATTGTCTGACAAACACTACAAAAACATCATAAGGAGAGCAAAACTTGAAAAATATTCCTCTTTGTAAAATGTAAGTTTTTCTTCCGCTTTATAAAGTGCAAGAAAAAGTTGAATTTTCAAAGGGCAAGAAAAACTTACAATTTATAAAGTGTAAGAAATAATTCCGTTATATATTAGAATATACTCGTTACGGACTAACGGAAAACGTTTGGAATATTGGATAAAGTGGAATTTTTTCTTCCACTAAGCCTATTTTAGTTACTTCCTAAAATAGTGGCTTATATTGGTCAATTTTATTTTTTTGTGGCTTATTTAGGTTCCGAACTCTTCAATTGAAGAGGTTTGGGACAATACTCCTACTTATGACAGTCATCATCATTCATAATCAAAGGCCAGCTAATGAATTAAACCATAATTATAGCTATTTATAGTAACTACAAGAAAAGCTAAGATATGACTAAAATGGCCGTTACACCTCAAATTCTGATTCCTTTCTTGCTCTCAAAGCTTTTGATGTTAGGTTTGAAACATGGGAGTTATCAGTATAGTTCAACCTGTACTATGTCTTCGCATTTATTTGGATTAAATGAGTCTAAGTGAATCTAATTATGATATACAGGAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAG</genome_strand>
        <mrna_strand>GGTGAGATCAATTTCAGAGGAATCGACGTGCCATGTTGGGACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGGTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204064" ref_strand="+" ref_description="SGN-E204064 [cLEC-22-O24]">
      <seq>tttgattaataagcagacccttgaagagaatgctgacagacgcgtccttcatgattcgattgatgatgtgcatgttagagaatccaaaggaaaaggagtttctctacattcacaggatgtgggggcagacttagctgtgaaacaagtcatgaaaaatgatatagataaaccaaacacgagccttcaacaagcattaaaaactgaatcacgtgaagctagctcatctaagaactccgaatcaagtctcaagaaaattgttgtatctggaagaagtgaagctgatgcaggcaaaatagatcaggaagttgtaaaacaagaagataaggtaactaccaccgaagagccaaatcttgccgttgagttgcctcaagagacaggtgtagttaccggtgatgttatagtcaagaaagaaaaccacacaagtcaggctcaagttcaagttccagtgacttcaaaagaaaatgtggatagctagaaaattgggagaacaggaggttgcattacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="60412" stop="61486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60712" g_stop="61218" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E204064" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60712" e_stop="61218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAAAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</genome_strand>
        <mrna_strand>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAGAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAGAAAATTGGGAGAACAGGAGGTTGCATTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E592219" ref_strand="+" ref_description="SGN-E592219 [45948]">
      <seq>atttactggagcaaatcttcgtggagctgtattagctggtgctaatcttcaaagtgcaaatttacaagatgcttgtctaataggctgtagcttctgtggggcggatcttcgttctgctcacctacagacagctgatcttaccaatgccaacctcgaaggagctaatcttgaaggtgcaaatctgaagggtgcgaagttaaccaatgcaaatctgaagggtgcaaaccttcaaagagcttatcttcggcatgtgaatcttcgtgatacacatttggagggggcaaagcttgatggtgccaatttactgggtgcaatcaggtgacaccacagatttgttctcatcccaaacctctcccagagcaacattaaagaagagagctacaaaaaggaattgtatagcaatagaatcaagccttacatgtattgaccaactattttagtttaatttggtggtctaaatctcaatttaattatctgtatgtgtgtaaacccaaattgtttcaaaccattctggccttgtaagaatgtttaacttttcaaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="1" stop="71322"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61210" g_stop="61290" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.750"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61291" i_stop="61503" i_length="213">
            <donor d_prob="0.000" d_score="0.75"/>
            <acceptor a_prob="0.750" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61504" g_stop="61520" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="98" r_length="17" r_score="0.647"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61521" i_stop="62208" i_length="688">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.170" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62209" g_stop="62213" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="103" r_length="5" r_score="0.800"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62214" i_stop="62288" i_length="75">
            <donor d_prob="0.291" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62289" g_stop="62307" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="121" r_length="18" r_score="0.632"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="62308" i_stop="63839" i_length="1532">
            <donor d_prob="0.864" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63840" g_stop="63849" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="131" r_length="10" r_score="0.800"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63850" i_stop="64611" i_length="762">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64612" g_stop="64648" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="166" r_length="35" r_score="0.649"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="64649" i_stop="66090" i_length="1442">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="66091" g_stop="66111" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="187" r_length="21" r_score="0.667"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="66112" i_stop="66607" i_length="496">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="66608" g_stop="66688" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="268" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="66689" i_stop="66902" i_length="214">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="66903" g_stop="66929" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="295" r_length="27" r_score="0.667"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="66930" i_stop="67107" i_length="178">
            <donor d_prob="0.547" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="67108" g_stop="67119" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="306" r_length="11" r_score="0.667"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="67120" i_stop="68136" i_length="1017">
            <donor d_prob="0.553" d_score="0.00"/>
            <acceptor a_prob="0.949" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="68137" g_stop="68154" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="324" r_length="18" r_score="0.556"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="68155" i_stop="69736" i_length="1582">
            <donor d_prob="0.274" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="69737" g_stop="69741" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="329" r_length="5" r_score="0.600"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="69742" i_stop="69852" i_length="111">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="69853" g_stop="69874" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="350" r_length="21" r_score="0.545"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="69875" i_stop="69943" i_length="69">
            <donor d_prob="0.640" d_score="0.00"/>
            <acceptor a_prob="0.893" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="69944" g_stop="69965" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="370" r_length="20" r_score="0.682"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="69966" i_stop="70017" i_length="52">
            <donor d_prob="0.015" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="70018" g_stop="70028" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="381" r_length="11" r_score="0.727"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="70029" i_stop="70858" i_length="830">
            <donor d_prob="0.832" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="70859" g_stop="71022" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="544" r_length="163" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E592219" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E592219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61210" e_stop="61290"/>
          <exon e_start="61504" e_stop="61520"/>
          <exon e_start="62209" e_stop="62213"/>
          <exon e_start="62289" e_stop="62307"/>
          <exon e_start="63840" e_stop="63849"/>
          <exon e_start="64612" e_stop="64648"/>
          <exon e_start="66091" e_stop="66111"/>
          <exon e_start="66608" e_stop="66688"/>
          <exon e_start="66903" e_stop="66929"/>
          <exon e_start="67108" e_stop="67119"/>
          <exon e_start="68137" e_stop="68154"/>
          <exon e_start="69737" e_stop="69741"/>
          <exon e_start="69853" e_stop="69874"/>
          <exon e_start="69944" e_stop="69965"/>
          <exon e_start="70018" e_stop="70028"/>
          <exon e_start="70859" e_stop="71022"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGAAGTGTTGTACCACCATTCAGCCAGAGCCAACCATTTGGGGCCATTCCCTAGGTTTCTCAAACATCATGCACCTGAGATAACACTCAAGACATCTATTAACAACTTCAGTCTGCCATCTGTTTGAGGGTAGTATGCAGAAGTGAGCAAGGTAACCTTCTGCAATTTGAACAATTCTTTCCAAACCTGCTTGTAAATACTGGATCTCTATCAGAGACTATAGTTTTTGGCATGCCATGGAGTTTGAATACCCCATTCATGAAAGCCTGAGCTACCTCCACTGCAGTATAAGGGTGCCATTAAGTGAGCTGCCTTGTTCTACCTGTCAACTACCACAAAAATAACCTCATGTCCATCGACCTCAAGGAAGACCCTCTATAAAATCCATCGAAATATCTTGCCACACTTGTTTGGAATTGTTAGAGGTTGAAGAAGGTCCGCTATGCTACATTTTCACCCTTGCACCTCTGACAAACATCACAACACCTAACATAGGCATAGACATCCTGTTTCATTTTCTTCCGGTAAAAATCCTGTTAAAGCCTCTGTAAGGTGGCTGTTATACCAGAATGACTTCCAGTAGCACTGTTATGGTATAAAGCTAATCTTTCCTCACTGTAGCCACAGAGCCTACCATCATCTTACTTTTTCTACTCAAGATCATAGCATGATAACTGTAGTAAGGTTTAGTAACAACTGTAGTCTGAATGGAAGTGATTAGTTTCTGTAGCACAGGATCCTGCAACCACGAGTTCTTAACATCTTCAAGTAGTTGAGCTTGAACCCCAGAGATGCTACAAAGCTGGATGGGTTCCTCTCTTCTAGAAAGAGCATCTGCAACAACATTGTCTTTGCCTTTTTTTATAGGAAATAAGGTAGTCATAACCAAGTAGTTTGACCAACCACTTCTGTTGGCCAGGGGTGGTAATCCTTTGCTCCATCAAATATTTGAGGGGTTGATGATCAGTTTTAATTATAAATTGCCTACCCAAAAGATAAGACCTCCACTTCTGGACAGGTGACACTAGTGCTAACACTTCCCTTTCATAAACTGATAGGGCTTGATTCTTCGCATACAACCTTTGACTAAAAATGCTATAGGTCTGTGATTTTGTGCAAATACAGCACCAATACCTCCTATAGAGGCTTCCGTTTCCACTATGAATTCTGTGGAAAAATCTGATAATGCTAACTCTGGTGCTGAAGTAACGGCCAGTTTGAGCTTGTCAAAAGCTTGAGAAGCAGCTTCAGTGCATTTGAGATTTCCCTTCTTCAATAAGTCATTCAAGGGTCTTGCTATAATACCAAAACTTTGGATAAACCTCATGTAGTACCCTGCAAGTCCCAAAAACCCTCTCAATCCTTTTAAAGTTGTAGGTTGGGGCCAGTTCACAACAGCATCTACCTTGCTTCCATCCATAGCAACCCCTTCTCGAGAGATGATATGACCTAAATAGTCAATTTGTTGAACCCCAAATGCACATTTGATCTGCTTCGCATACTAAACATTTTCTAGAATAATCTTGAAAGTTTCCCTCAAGTGAGAAAAGTGATCAGTCCACTTAGAGCTGTAGACAAGGATATCATCAAAGAATACTAAAATGAACTTTCTGAGATGAGGAAGAAAAATCCGATTCATCAAGCTTTGAAATGTGGAGGGGGCATTGGTTAGGCCGAAAGGCATGACCATAAATTCATAATGAACTTGATGGGTTCGAAAAACAGTTTTTGGGATGTCAGGCTCAAACATCCTAATCTGATGATAACCTGATCCTAGATCCAACTTAGAGAAATACTTTGCACCATGTAGCTCATCTAACAATTCTTCAATCAATGGAATGGGAAACTTATTCTTGATAGTACGTGAATTTAGTTCTCTGTAATCAACACACATTCTCCATGAACCATCCTTCTTCTTAAACATGACTATGGGTGAAGAATATGGACTGGTACTAGGCCTTATCACTCCTGAATCCATCATCTCATTGACCAGCTTCTCAATCTCATCCTTCTCAATTGCAGCGTATCTGTAGGGTCTAATGTTGATAGGAGAAGTGCCTTCCTTCAAGATGATTCTATGGTCATGATCTCTTGATGGTGGTAATTCAGTTGGTGCCTTAAACAAATCATTGAAATCTTGCAGTATCTCCTGTATGTCAGCTTTATCCTTACCAACTTCATCACAAGTGTTTATAGAAAAGAAACTTCCTGGTTCTCCACTGTACTCCTCCCCTAAATACATACCCACAGAAATCAAGCATAGTTCTGCTGGTTTAGCTAACAATTTATCCATGCCACTCTGCTGTACCAGCTTAGCTGCCGGAGGTTTGATACCCCTCAGAGACACCTTGTGTCCCATGATACTGAACTCCATTTTAAGTTGTTTGAAATTCCACGTTATATCCCCCAAGGTAATTAACCATTGGACCCCAAAGACCATGCTACACCCTCCAATAGGTAGCACTAACATGTCAGAATCGAATGAGACCCCTTGCATTTTCCAAACCAGCTTCTTACATGTATATTGACAATGCATCTTGTTTCCATCAGCCACAGACACAGGAAAAAGAGAGATAGCAGTTAAAATACATCCTAACCCTTTGGCAGTGTTTAAATCCAGAAAATTGTGAGTACTCCCTGTATCAATTAGGACTTGTACAGCCTTGCCCTTAACAGATACTGTTACTCTCATAGTCCTAAAGTCATGCAGTCCATTCATGGTATAAACAAAAACATGAGGCAGAATAACCCCCTGATCATCAGTCTACAGGGAGTCGCCTATCATAGTCAAGAATTCAGCAGGGTTTGCAACAACTTCCTGCTCTACTTCCTCAACACCCTCACTGTCCTCCTCTACTTCTATAGAAAATAATTGTTCTTCTTCTTACGAACATGGCCATACGCATACTTTTCATCACAATTAAACATAGTCCTTTGCTCCTCCTTTCATCCATCTCATTGACATTTTTCAGGTTAGGTTTGGGGTTATTAGAGAAGGTCGTGGAATTTTTGGAAGGGTTTGGATGACTTCTACTAGATTGGTAGGTGGATCCATAAGAAAAAGTGGGAGGATTATCAAATCTGGGAGTGGTTTTGGGATTGGAAAGCACTGAAGATCCAGAAGATACTTGCTGCTGGACAAATATGGCCTGCTCCTGTATTCTAGCTAAGTTAACTGCCTTAGCTAGTGACCTTGGTGCAAGCATTTTAACAGGTAAGCCAACTTCTGGTTTCAATCCTCTAACAAAGCAACTAACAACCTGATCTTCTGATAGTTCAACCCTAGTGAGTAATTCATCAAAGAGATTGACATAGTCTTGAACAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCATTGGATCGTCGAATAGTTCAGCCCCAAACCTAGCATAGAGGCTTCCTACATACTCAGTCCACCTTGGCCATTCCCTTGACAGCCTGTGCTTCACATAAGATTGGTGCCATTGGAGTGCCTTGCCCTCGAAGTTGCAAGATGCCAGCTTAACTTTTGAGTCTTCCGGGGTTTCGTCTACATCGAAAAAATTGTTCACATTTGTAAAGCCATTCCTTCAGTCCTTGTCCATCAAATTTAGGGAAATCCATCCGGTAATTACGGGTTGGCAATTGATAATTTCCAGGTCTATTTTCGCCCTTAGGAATTCCTTCAGCTGGGGGTCTAACACCGCCATGGGTGTTCATAGATGTTGCCAGCAATCTTCGAAATTTGTCAATGGCCTGAGCCACACTAGCATCCACAGACTGTCGAATCTTCGCGACAGAGCTGGTTACTCCTTCCATGGAGTGTTTGAGATTGTCAACCTCCTTGCGCAGCTCCTGCATCTGAGTGTTGTTATCTCCCATTGCCACAAATCAGAGAAATCTCTTGCTCTGATACCAATGATACAGTGTCAATTGAGTAAGCCTATAGAGCAAAGACGATTGAAAATTGCTCTTGAACAGCTGAACTCGAATCTTCCAAGGAGGAAGATGAATTGAGAGAGAAGATAGAGAGAAAGAGAATTTCTTATTGGTCTGCAAATTGGTTCTTTATAATGAATTCAACAGTATATGTACGAAGGGACAGCTGTCCACAAATCAGTTATAACAACTTGTAACCGACTTCCTCTACAACTATTACTACTCACGTGTCAGTCATGTGTCCCATTTAACAGACTCAAATACAAAATTAACGGCTAATTCAATTTCTAATCAATTGACATGTAACATTTATATATACCTCCTTATTGAAATAGTCCTTGATGTATATAGAAAGCTGATCATATTGATCCTTAGCCCTAAAACAAACAGTAAAAGTAAAAAGTTCCGTTAAATTTAATTGTGGGTTACTTTGAAATTGACACCTGACAGACCCTTTCTCCCGCAATCTTCTTCCTTTCACCATTAAAGGTATGGTCCATCTTCAGTCCACCCACCAGCCATTCTTATAAGAACAGAAAAACACACTACACTCATTTCTTATCTCCCTCTAAACAATAATCCCCAGCAGCTTCCATTTTCATATATACATATATATAACAAAAAGTGAGACTGCTAAAACAAATGTGACCTAAGTAAATCAGATGATACATTCCATTCCTCTTCCCAGGAAAACTCCAAAACCAACTCTCTTCAAATTTTAACCAACTATTCTCTCTTTTTATAGCTAGATATGGGAAGAATATAGCTTTCTTTTTGTTTTGTCCTTTTTAAAACTAATGATTGATATACAAAACGTTACCTTTATCAAAGAAAAAAAAAATGATAGTCTTTTCATGTATTTTTCTATATCATTGTTCAGATAGAAGGGTGAAAACTGAATGGACAGAGGTTAAAAATCGATATCTTCACAATGTTATTTGAAAATTGAAGAGATTTTTGTGTGTCAAAAAGGATTTTGGTAATGAAAAGAAGAATAAACCAACTGAAAATTGCAGCAGAATTGGCGTAAGAAAGACGATTGAGGTAGAAGGGGTCTGCCACTTGTCAATTTCGAGGCACCCACAAATAAGTTTAACAGAAATTTTCATTTGTACAGTTAGTTTTAGGGTTGGCAATCAAAATGATCATCTTTTTATATACATCAAGGATTATTTCAATAAAAATAAGTATATATAAAGGACCAAAATAGTTCAATCCGTAAACATCAAGGACCATTTTGGTCATTTTCTCTACTACGAAATATGAACTATACAATAGCCTACTCATCTAAAGATCATATGAAATGAGTCAGCTACTCTTATTATATTTCCTTTTGAGTCCAAACAAGAGTCAGTTTCCTTTATGCCTCTTAATTGATTTTCCACTACTTATTCCAGGGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACAGTAAGTCATATTACCACTGCCAATCAGTTGGGCTTTGTAATAGCCTACTTATCTATCCTCAATTATGTTGATTCTGTGAAGCATATGTGGAAATTTTTAGGAAAGAAAAAACAATTGCTTGAAATAAAGCCAGATTTTCATTCACTGACAAGGATTAACCTTTTCCCTGGCCTTTTGCTGGATCTTCTTGTAATCCAATTCACCGATGAATTTCCATCTGGAAGGAAAAAAAGTTGATAATGTGAATCAAAGTTCTCTTGAATAATAATAATTATATTGGAATCTCTGTGATATCCAATGGAACCTTCGCCTTTGAACTTTAAACTACATATAGGAAATGCATTTCACCTCACCAACCGTTGGGATGTAGTAATCATAAATTTCTAAAGATAAGTAAATGACACTCTCTACCACTATAAACCATCTTTCCTGTATATCTGTCTTTCAAATTCCTTTTCTGACTCAAACCATTGAGTTTTTGGGCGTTCATATGGCTACTATCCCACGAATTCATTTCAACTTCAAGTTGCTATCTTGGAGTGTTTAAATAATTTTCCCAACCTCAATAGTTTTCTTGTGCTGTCTTGCATATTTCTGATTGTGACTGCTAAATTGTACTGTATTTTCTATGTATTATATGTGTAAAGAAGCATGAGAGGTTAACATCAACATTTTTGAATGTCTAGCTCAGTGTTATCAAAGGCGTGCTTTAAGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTTGCCTCGCTTTATGTGCACTTCAGTGTCGTCATCAAGGTTTTAAGACAAACTTTTCACTGCTAATGAGCCTCATATGAAGAAGTGACACTAAACAATTAATATTTTATTATATCATAATTTTTTTTTCAATTTCTTTGGTCATAAATGTGTCATTCATGTTCATAATTTCTAGTCTTGGACTAAACATATATATTTGTATTTTTTTCTCCCTTTGCGCCTTTTTTCATTAAAGCCCACGCTTTATTTCCGCTTTGCGCTTAAAGTCCCCACAGACCTTAAGAGCTTTTTTGTGCTTTTCGCCTTTGATAACATCACTCTAGCTCCAGAACAGTATGTACATTATGTTGTTTGACTACTTAATGTCTCGTCAACTAAAAAGGCTGAAAGGCAGAATATTTTAGTTATGAATATATGGCATTTATGAAGTTTGTGAGATACCTATCAAACTATGTGCAAAACTTGCTTGGTAATTGTTGCTTCCAATTGCACACACTAGTGTACGTGATCGCACAAGTAATTTAGTGGCTCTAAAAGAGCCGGATTATCGAACCCATAAGACTTGTCTATTAATTATCTTACTAAATTATACTAGTCTAATTATTTATTCAAGAGTGCCAAAAGAGTTTGATTTATAAATAAAGAATGCAAGAATTGAATACTAAGATTACCTTTGTATGGGGAAATTTCAGGGCTGCAACATGCTTAAGGTTTCATGTATCACATCTCATGTGATGAATCAACTATGGTTATCAAAATTACTAATTTACATGGTTGATTTTATGATCATAACTTCCCGACCTTTAATCGCCTACTCCAATTGACTTTCTAACTACATCTTTGAGCGGAGATAGACAAACTCAATTGGCGAGCATTTATATTTCATCCTATTTAGTAGCTAAGCTCAATGTTCATCTCAATTTTAATCTTGAACATGAATCTAAACAAGTGATATGCAAGAGGGATCGAGCTCTTTGTATTCTTTGGTCTATCTATCCCTTCATCTCTCGAGTCCAAGAATAGACAATATGTTTATTTCTATGGTGATCAAGCATGAAATACTAAAACCAAAATTCAAAAGTAATTTGAGTGAAGCCAACATTAATTCAAAACAATCGATGTTCAAAAATTACTCGTAGTCGCAACCCCACAACAAGGGTCTTTAGCTACTAATGTCTAAGAAAGCAGAAGAAGAAAAAGAACCCTTACAGTGAAATCTATTTCTTGCCTTCTGCACTTGAAAAAGAAGAAGCTCCCCTACAAAAGAACCCTAGGGCTCTATTTATAGTTGCGGAAAATAATCCCTCCTAATTGATTCGGACTCCTTAATTTTCAGAATTTTCTTCGGGGTGTTCGTGGGGCAGCTCGCCACCATAGCGCCGAGACTGCTGGGGCAGTGTGTGAACAGTACGGCAAAAGTTGGCTTCAGTAGTTTAGGCCCTGGCGCGGTGCACCTAGGCTGCTCCAGGGGTGTTTTTCTTCAGTCATTTTTCCTTCACTCCCGTCACCTCTTATTTAGCTCATATTCCTTTAGGAGCCCCTACATGTGCTAATCATGTAGGTTAAGTGCGCATTCATTGGAATACTTTATCAAAACCAGTGTTATCAAAGGCTCTCGTAAGCCTTAAAGCGAGCTCAAAATGTGTTGAGTGTTTCACCTCGTTTTATGTGCTCTTTAGTGTCGTCATCAAGGTTCTAAGGTAAACTTTTCCTAGCCAATGAGCCTCTTATGAAGAAGTGAAACGAAACGAAATAATTAATATTTCACTTTATCGTAAATTTTTTTCAATTACTTTGGTCATATATTTGTCATTCATGTTTATAATTATTATTTTTTGGACTAAACATATATATTTGTGTTCTTTTCTCCCTTTGCGCCTTTTTTCATAAAGCACATGCTTTATTTGCGCTTAAAGGCCCCATGGACCTTAGAGTTTTTTGCGCTTTTCGCCTTTGATAAACTGATTAAAACACAACAATTATCATAAAAATGTCCTCGAAACATAAGTCACATGTGGGTAAATCGTAGTGTATGGGCATATAAATATGCCCAAGATCAGTAATTCCTTAAATCTTGCTCTCGGATGATCAAGTCTGATTCCTTCCAGAGAGGCACCATTGAGTTTTTTTATACTAGAGTTTAAGCAATGAATTTCCATGAGCACATCATCCCATATTAGCGAATCTGATTCATGTCTGTGATCTTTATTTGCCAAAATGTCTGCACACTGATTTGCTCCCTCCAGATGTTGATAATATTTGCTTTCTCGACTTCCGGGTATCTGCAATCCTCGATAATAGCCTTGGAGGATGAAACTGAATGCCGTCTTCGTTGATAAGCTTAACAAGAAGCAAACAATCTGTTTCCACTTCTAATTATTTTATCTCACTGCCTTTGCTAATTGTAGCCCTTGTTCGACTCCTATTTCCGTAAGGAAGCTTGAGTTAGGTTTTATCTTACATGAATATCCCATTATCTTTTTCCCTTGATTATCTCAGTCTTCCAAAAGCAGCATCTCCAGTTTGGGTTTTCACATTGCCATCAATGTTCAGTTTAATCTTTTCTAAACAAGGAGGAGACCAAGTGAGTAATAGTCTTAACTTCAGATAAGAAGTTCATCAAGGAAATATTTCAACAATTTCCCAAGCATAATCACTATTATGTGCAAAGATCTGTTGATGGACGTTATTTTTTCCAATCAAATTTCTATTTCTTTCTTTCCATTTGCCAAATAGATGAAAATGTTAGTGTAACACAGTAGGAGATCAATCAATCCATTCAAGCATAAGCATAGCATTCATTTCATGAAATCAATCTCATTTTGGGAGTGGAAACTATCCCAAATTTATCTACATTTTTTACTAGTCCTAATAATATGTGAAAAGTCCTCCTTTTCATCATCACATCATTCGCATTTGTGGAAGTCAATTATCTTCCTAGTGGATCTAAGGTTGTTATGTCTTACAACCCATATGAGTTTTTTAGAAAAAAAAAAAAAGAGGGTCTTACAAGTCACATGAAGCGTCTTATTTTCCCTAGATGAAGTTTCCCTGGTCAATGTCCTATCATTTGAGTTGTGTATCCAATTATGCTTCTGTTGATCCTTGGACTAATCTCCTTTTACCACTGCATTCAATATAGAAATGTCTGATGTAACAAATTTAACCATAGTAGTTAACTGATGATGGTATGTTTTGGTATGTTTGCCTAGTATATAGGGAAAGGGATGAAAGCTTGAAGGGTGTGATTCAGCTCTGTTGCTTAATATTCTCTGCTCGCCATTTTATTTTATTCTAGTTGGAACTAAATATTTCTCTCTTTCTCTCAGCATTTGGAGGGGGCGAAGCTTGATGGTGCCAATTTACTGGGTGCAATCAGGTGACACACAGATTTGTTCTCATCCCAAACCTCTACAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</genome_strand>
        <mrna_strand>ATTTACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAGATGCTTGTCTAAT.....................................................................................................................................................................................................................AGGCTGTAGCTTCTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCG...........................................................................GATCTTC-GTTCTGCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATCTTACCAATGCCAA--CCTCGAAGGAGCTAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGAAGGTGCAAATCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA......................................................................................................................................................................................................................CATTTGGAGGGGGCAAAGCTTGATGGT..................................................................................................................................................................................GCCA-ATTTACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGCAATCAGGTGACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACA...............................................................................................................GATTTGTTCTCATCCCA-AACC.....................................................................TC-TCCCAGAGCAACAT-TAAA....................................................GAAGAGAGCTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAGGAATTGTATAGCAATAGAATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGTATGTGTGTAAACCCAAATTGTTTCAAACCATTCTGGCCTTGTAAGAATG-TTTAACTTTTCAAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424919" ref_strand="+" ref_description="SGN-E424919 [STM-44-E8]">
      <seq>tatatttaacaggaggcaaatcgccaaaatttgcagggtatacaggaaggacctgggtcctggggtggtcacccaaatatgtaaggatgaagttacaaaaccccttagcatgagtcaactcaactcaacattcctatgaactttgcaaataacttgacagaatcaaaataacaggtcagtatgacaatccttgctagaaacatcagttcagtggcattcccaaatcactccttcaatatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="74416" stop="75263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74716" g_stop="74963" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E424919" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74716" e_stop="74963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTTAACAGGAGGCGAAAAGCCAAAATTTGCAGGGTATACAGAAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAAGATGAAGTTACAAAACCCCTTGAGCATGAGTCAACTCAACTGAACATTCCTATGAACTTTACAAATAACTTGACAGAATCAAAATAACAGGTCAGTATGACAGTCAATCCTTTGCTAGAAACATCAGTTCAGTGGGATTCCCAAATCACTCCTTCAATCTGTA</genome_strand>
        <mrna_strand>TATATTTAACAGGAGGCAAATCGCCAAAATTTGCAGGGTATACAGGAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAGGATGAAGTTACAAAACCCCTT-AGCATGAGTCAACTCAACTCAACATTCCTATGAACTTTGCAAATAACTTGACAGAATCAAAATAACAGGTCAGTATG--A--CAATCC-TTGCTAGAAACATCAGTTCAGTGGCATTCCCAAATCACTCCTTCAATATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428159" ref_strand="-" ref_description="SGN-E428159 [STM-49-F22]">
      <seq>atcagtactcgttatctggaagcaagcgaccgttttcagctgtagtacataatccacatcatatggattccagtggagtttctagagtgcagttagagagctctttccttactgcaaaccgaagtatgttgccacgtagtcgtggacctctgggtacaccatcttttgcctattatggccagcttggcagtgaccattcaccaggttcagtttatggggtcgaaagctttccgaattcttttcagtctcatgaccgcgacccttatggtggaaatcgtagcatatatcgtagatattgaaggagtgatttgggaatgccactgaactgatgtttttagcaaggattgtcatactgacctgttattttgattctgtcaagttatttgcaaagttcataggaatgttgagttgagttgactcatgctaaaggggttttgtaacttcatccttacatatttgggtgaccaccccaggatccaggtccttcctgtataccctgcaaattttggcgatttgcctcctgttaaatatgaggggatgtcatgaaaaaaaaaccatatatgattgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="77727" stop="74415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77427" g_stop="77384" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77273" g_stop="77194" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="124" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="77193" i_stop="77078" i_length="116">
            <donor d_prob="0.873" d_score="0.94"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="77077" g_stop="76998" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="204" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76997" i_stop="76886" i_length="112">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76885" g_stop="76845" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="245" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76844" i_stop="75870" i_length="975">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75869" g_stop="75821" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="294" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="75820" i_stop="74959" i_length="862">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74958" g_stop="74726" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="522" r_length="228" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E428159" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="77427" e_stop="77384"/>
          <exon e_start="77273" e_stop="77194"/>
          <exon e_start="77077" e_stop="76998"/>
          <exon e_start="76885" e_stop="76845"/>
          <exon e_start="75869" e_stop="75821"/>
          <exon e_start="74958" e_stop="74726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAGGTTCATACCATTGTCTGTCATTGTGAATGGACGTCTTCTGCTATCATATAAAGTAGAATAACGTCTTGCCGATACTTTACCTCAGTAATATTGACTCTGTACTTTTTTTCATTTAGTATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAGGTGAGTTCAACATGCAACTAGATGGTTTTTGAGATCATTTTCGACTCAATAGTTTATGCCTTATTGAGTATGTCTATTTTGGTTAAGTTGTCTACTTTTTGGGTCTTATCAGGTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAGGTACAGAATATTGAATGATCTGTGATCATTGTTACGATTCACCATTTATCATGGCAAACATTTTGTTGTTCATTGGGAACCCCAGTTATATTACATCTGCCACTCTTGTCATGCTCTAATTTTGTGCTATTGTTGTATGTTCTGTGCTTTTGAGTTTAATGGCCTGAGAACTGGGCGTGTTCTATTTAGATAATTCATTGCTTGATATTGCAAGTGGATAGTAGTTTATCTCCCTGTTCCCGAATCAGATGTTCTGTAGAATACATTTGCAATTGTTGGTGAGATGCAACTTCTTTATATGAAAGTACTAACTGCGGGCCATATCCAAGTCCTCCGGAAAATAAATTGGAGGGGAAAAAATGTTTCCAGTATGGCATGCAATAGCTTTCCTTGGGAAAAATGGCATGTAAACAGACTAACACTATAATCTTTTAACTTCATTCGATGTAACCAATTCTCAAAAAAATAAAAATAAAATTTCATTCTGCTCAATGACCTAGGATTTTCATAATGTTATCTGGTTAAGAAATGGAAAGCTTGTTCCTAAATAGCATTATGTTTTTAATTTTTTTCTCATATTCTTGATTAGCATGTTTACTTTTGCATAGTTACTTCAAGTGGTTTATACAACCTGATTATTCACCTGCAAGAAGTTCTTAAGCTCAGGAAACTAACTCCTCAGGGAAATACATCTTGATGATACCTATTTTGTAAAGGATGATAAGCTCTAGCTATTTAGCTTTGTTGCTCAACTAGAATTTCTTAAATGTATTTGATAAAGTACCATATATACATTATTATTAATTTATTTTAATCAGACCCTCAGCCTAATTTTTTCTCCTTTCTGAGTTGTATTTATAGACAATTATCCTTTTTTTTTTGAACATTAAATGAAGATTGAGATGCTAGAGACTGACGTTTCTGTGTTTTAGATCGGCACATGGTTTCTGATCGTGGTTTTTGTTTGTCTTGCAGTCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGATGTGAGTAAACTTCTTTTAGCATCTTATTTGGCTTTTGAACTGTTTCTTTGAGCAGTCTCAGCCAATTCAGTAATCAGTATATTATGTTTGCTTCATTTTTTGAAACCAGTCCTGCCTGTCCTCGCTATAAAGTTAGCAGATGAGGTGTTCCTAATGCCCAGATATGTATATGGAACCTGACTAATGCAATCATAAGTTAAGGGTCGTCTCAAATGTTGGTTTCTTTTCCTGCATGTGTTCCTTCATTTGCTTTTTCTGTTAGTTTGGGTGGGTAGGTGGGTGGTCACAAGAGAGTGCTCAATGAAATATTTCCTTCAATCTGATCTAAACCAACAAAGCCACATGGGGATGCTCTATAGGACTCTTGATTCGCCATTTGTCAAAATTCTTGTTGTAGTGTTTTCTTTAAAGTTGGGAGAGCACCATTCGAATGTGGTGTGTCAGCAGTTTATTGCAGATGAAGGCTCAAATTGCTATGGTGATCTTGGGTTTGCGTGAACTTTCTATCAAGTTCACATTATCATACCGTCTTTGGATCTTGTAGAAACTAGATTCACGTTTGTCATGCATCTTATTGTTTTTGGTTGAGTTTCTTGTTAGTATAGTAGTTCTATCTTAAACACATGGTCTCCAATGTCTTGGAATTCCTCTTTAAGGTAGGTAAATTTATTATACGTCTAAGCACTGTTTCAACTTTAAATTTCTGCTGAATGTTATATGTAGTAAGTTGGCAGAAGAAATGAAATATAGTCAAAAGCTGCCACAAGTATCTGCTAATGATGTGCTGATCTAATCCACTGTTGATCTTAGTTAACTTTCATTCGACGTGATCTTTATCGTCATTCTTCGTTGGTTTCTACAGATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</genome_strand>
        <mrna_strand>ATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCATATGGATTCCAGTGGAGTTTCTAGAGTGCAGTTAGAGAGCTCTTTCCTTACTGCAAACCGAAG....................................................................................................................TATGTTGCCACGTAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG................................................................................................................GTTCAGTTTATGGGGTCGAAAGCTTTCCGAATTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATGACCGCGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGGAGTGATTTGGGAATGCCACTGAACTGATGTTTTTAGC-AAGGA-T---TGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGCAAAGTTCATAGGAATGTTGAGTTGAGTTGACTCATGCTAAAGGGGTTTTGTAACTTCATCCTTACATATTTGGGTGACCACCCCAGGATCCAGGTCCTTCCTGTATACCCTGCAAATTTTGGCGATTTGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E610087" ref_strand="+" ref_description="SGN-E610087 [57241]">
      <seq>tagaaagctctttccttactgcaaaccgaagtatgttgccacatagtcgtggacctctgggtacaccatcttttgtctattatggccagcttggcagtgaccattcaccaggttcagtttatggggtcgaaagctttccgaattcttttcagtctcatgaccgcgacccttatggtggaaatcgtagcatatatcgtagatattgaaggagtgatttgggaatgccactgaactgatgtttctagcaaggattgtcatactgacctgttattttgattctgtcaagttatttgctaagttcataggaatgttgagttgagttgactcatgctaaggggttttgtaacttcatccttacatatttgggtgaccaccccaggacccaggtccttcctgtataccctgcaaattttggcgatttgcctcctgttaaatataatctattgtcatgaattttcaagtattaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="77379" stop="73830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77224" g_stop="77194" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77193" i_stop="77078" i_length="116">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.933" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77077" g_stop="76998" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="111" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76997" i_stop="76886" i_length="112">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76885" g_stop="76845" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="152" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76844" i_stop="75870" i_length="975">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75869" g_stop="75821" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="201" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75820" i_stop="74959" i_length="862">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="74958" g_stop="74726" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="428" r_length="227" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="466" polyA_stop="479"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E610087" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77224" e_stop="77194"/>
          <exon e_start="77077" e_stop="76998"/>
          <exon e_start="76885" e_stop="76845"/>
          <exon e_start="75869" e_stop="75821"/>
          <exon e_start="74958" e_stop="74726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAAAGCTCTTTCCCTACTGCAAACCGAAGGTTCATACCATTGTCTGTCATTGTGAATGGACGTCTTCTGCTATCATATAAAGTAGAATAACGTCTTGCCGATACTTTACCTCAGTAATATTGACTCTGTACTTTTTTTCATTTAGTATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAGGTGAGTTCAACATGCAACTAGATGGTTTTTGAGATCATTTTCGACTCAATAGTTTATGCCTTATTGAGTATGTCTATTTTGGTTAAGTTGTCTACTTTTTGGGTCTTATCAGGTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAGGTACAGAATATTGAATGATCTGTGATCATTGTTACGATTCACCATTTATCATGGCAAACATTTTGTTGTTCATTGGGAACCCCAGTTATATTACATCTGCCACTCTTGTCATGCTCTAATTTTGTGCTATTGTTGTATGTTCTGTGCTTTTGAGTTTAATGGCCTGAGAACTGGGCGTGTTCTATTTAGATAATTCATTGCTTGATATTGCAAGTGGATAGTAGTTTATCTCCCTGTTCCCGAATCAGATGTTCTGTAGAATACATTTGCAATTGTTGGTGAGATGCAACTTCTTTATATGAAAGTACTAACTGCGGGCCATATCCAAGTCCTCCGGAAAATAAATTGGAGGGGAAAAAATGTTTCCAGTATGGCATGCAATAGCTTTCCTTGGGAAAAATGGCATGTAAACAGACTAACACTATAATCTTTTAACTTCATTCGATGTAACCAATTCTCAAAAAAATAAAAATAAAATTTCATTCTGCTCAATGACCTAGGATTTTCATAATGTTATCTGGTTAAGAAATGGAAAGCTTGTTCCTAAATAGCATTATGTTTTTAATTTTTTTCTCATATTCTTGATTAGCATGTTTACTTTTGCATAGTTACTTCAAGTGGTTTATACAACCTGATTATTCACCTGCAAGAAGTTCTTAAGCTCAGGAAACTAACTCCTCAGGGAAATACATCTTGATGATACCTATTTTGTAAAGGATGATAAGCTCTAGCTATTTAGCTTTGTTGCTCAACTAGAATTTCTTAAATGTATTTGATAAAGTACCATATATACATTATTATTAATTTATTTTAATCAGACCCTCAGCCTAATTTTTTCTCCTTTCTGAGTTGTATTTATAGACAATTATCCTTTTTTTTTTGAACATTAAATGAAGATTGAGATGCTAGAGACTGACGTTTCTGTGTTTTAGATCGGCACATGGTTTCTGATCGTGGTTTTTGTTTGTCTTGCAGTCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGATGTGAGTAAACTTCTTTTAGCATCTTATTTGGCTTTTGAACTGTTTCTTTGAGCAGTCTCAGCCAATTCAGTAATCAGTATATTATGTTTGCTTCATTTTTTGAAACCAGTCCTGCCTGTCCTCGCTATAAAGTTAGCAGATGAGGTGTTCCTAATGCCCAGATATGTATATGGAACCTGACTAATGCAATCATAAGTTAAGGGTCGTCTCAAATGTTGGTTTCTTTTCCTGCATGTGTTCCTTCATTTGCTTTTTCTGTTAGTTTGGGTGGGTAGGTGGGTGGTCACAAGAGAGTGCTCAATGAAATATTTCCTTCAATCTGATCTAAACCAACAAAGCCACATGGGGATGCTCTATAGGACTCTTGATTCGCCATTTGTCAAAATTCTTGTTGTAGTGTTTTCTTTAAAGTTGGGAGAGCACCATTCGAATGTGGTGTGTCAGCAGTTTATTGCAGATGAAGGCTCAAATTGCTATGGTGATCTTGGGTTTGCGTGAACTTTCTATCAAGTTCACATTATCATACCGTCTTTGGATCTTGTAGAAACTAGATTCACGTTTGTCATGCATCTTATTGTTTTTGGTTGAGTTTCTTGTTAGTATAGTAGTTCTATCTTAAACACATGGTCTCCAATGTCTTGGAATTCCTCTTTAAGGTAGGTAAATTTATTATACGTCTAAGCACTGTTTCAACTTTAAATTTCTGCTGAATGTTATATGTAGTAAGTTGGCAGAAGAAATGAAATATAGTCAAAAGCTGCCACAAGTATCTGCTAATGATGTGCTGATCTAATCCACTGTTGATCTTAGTTAACTTTCATTCGACGTGATCTTTATCGTCATTCTTCGTTGGTTTCTACAGATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</genome_strand>
        <mrna_strand>TAGAAAGCTCTTTCCTTACTGCAAACCGAAG....................................................................................................................TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGTCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG................................................................................................................GTTCAGTTTATGGGGTCGAAAGCTTTCCGAATTCTTTTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCATGACCGCGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAAGGAGTGATTTGGGAATGCCACTGAACTGATGTTTCTAGC-AAGGA-T---TGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGCTAAGTTCATAGGAATGTTGAGTTGAGTTGACTCATGCT-AAGGGGTTTTGTAACTTCATCCTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTCCTGTATACCCTGCAAATTTTGGCGATTTGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243123" ref_strand="+" ref_description="SGN-E243123 [cLEE-2-K9]">
      <seq>tttaccttcctcatggattgaagaaaaagtgcgagactactttggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgcctttgtcaattatataagccgcgagtctgctcttgcgtgcattgaaggattcagtcatgaaccagctaatgaaagcggatccaaggtaagcattaaggtatctcttgctaaacccatgccaaagagtaagcaaactaaacgtgtaacccttcctactagaagggaacctccggagaagaagaaaatacaggaccattccatcttgaagaggcatgaacccagcagaaaggtaaactacatgagaagatatgatgaggatcacagagttgaaggatcttcttctacaaccaatgaacttctgcacctcttgagacaacaagggccagttcgtcagctccattccggtttgaacatgggtattaaccatcagtactcgttatctggaagcaagcgaccgttttcagctgtagtacataatccacatcgtatggattccagtggagtttctagagtgcacttagaaagctctttccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="81716" stop="76905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81416" g_stop="81218" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81131" g_stop="81020" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="311" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78889" g_stop="78731" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="470" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78730" i_stop="77437" i_length="1294">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77436" g_stop="77384" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="523" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77273" g_stop="77205" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="592" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E243123" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81416" e_stop="81218"/>
          <exon e_start="81131" e_stop="81020"/>
          <exon e_start="78889" e_stop="78731"/>
          <exon e_start="77436" e_stop="77384"/>
          <exon e_start="77273" e_stop="77205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGGGTAATTTCATATATTTCGCTTCTAACATTTTCTCTTCCTTTGCATCATGTCATTAGACATAATTTGTTGGCCTAGCTTTCTATTAAAATGTTCTGCTAGTTGTAATGTGCTTTATATTTTTATTAAGCTAAAGGTTAGTGTAATGTACTTGTTCATGTACTTTTGTACCTCCTAAACTTATTGCTGTTGATATTAAGGGAATAGAAAGCTACTTTGAATACAATGGTGTGTTAGGGTAAAAGAAAAGGTCTAAAAAGCATGAGAATCTGCAATATGTCATCTGCAAGGGACCATGCTACAGCTTAGTGCCGAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCCAGAGCTCTGCACTTCGGATCCACCCCACCCCACCCTTCTTTTTCTTTCTTCCTGTTGTATATAATTGATATCTGTTTTCTATTATTCTTGTCCGAGATCAGGTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</genome_strand>
        <mrna_strand>TTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459484" ref_strand="+" ref_description="SGN-E459484 [cPRO-28-C1]">
      <seq>acaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctaaacccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaagggaacctcgtgaggagaaggaaatacgggaccagtccatcttgaagaggcatgaacccagcaaaaaggtaaattacatgagaagatatgatgaggatcatagagttgatggaagatcttctacaaccaatgaacttctgcacctcttgagacaacaagggccagttcgtcagctccattccggttttgacatgggctcaggtattaaccatcagtactcgntatctggaaagcagcgaccgttttcagctgtagtacataatccacatcatatggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="82161" stop="77081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81861" g_stop="81692" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81439" g_stop="81218" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="392" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81131" g_stop="81020" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="504" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="78889" g_stop="78731" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="663" r_length="159" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="78730" i_stop="78060" i_length="671">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.977" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78059" g_stop="78053" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="669" r_length="6" r_score="0.429"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78052" i_stop="77437" i_length="616">
            <donor d_prob="0.550" d_score="0.00"/>
            <acceptor a_prob="0.977" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77436" g_stop="77384" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="722" r_length="53" r_score="0.925"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110">
            <donor d_prob="0.458" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="77273" g_stop="77248" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="748" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E459484" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81861" e_stop="81692"/>
          <exon e_start="81439" e_stop="81218"/>
          <exon e_start="81131" e_stop="81020"/>
          <exon e_start="78889" e_stop="78731"/>
          <exon e_start="78059" e_stop="78053"/>
          <exon e_start="77436" e_stop="77384"/>
          <exon e_start="77273" e_stop="77248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGGGTAATTTCATATATTTCGCTTCTAACATTTTCTCTTCCTTTGCATCATGTCATTAGACATAATTTGTTGGCCTAGCTTTCTATTAAAATGTTCTGCTAGTTGTAATGTGCTTTATATTTTTATTAAGCTAAAGGTTAGTGTAATGTACTTGTTCATGTACTTTTGTACCTCCTAAACTTATTGCTGTTGATATTAAGGGAATAGAAAGCTACTTTGAATACAATGGTGTGTTAGGGTAAAAGAAAAGGTCTAAAAAGCATGAGAATCTGCAATATGTCATCTGCAAGGGACCATGCTACAGCTTAGTGCCGAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCCAGAGCTCTGCACTTCGGATCCACCCCACCCCACCCTTCTTTTTCTTTCTTCCTGTTGTATATAATTGATATCTGTTTTCTATTATTCTTGTCCGAGATCAGGTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTC</genome_strand>
        <mrna_strand>ACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAAGGGAACCTCGTGAGGAGAAGGAAATACGGGACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAAAAAGGTAAATTACATGAGAAGATATGATGAGGATCATAGAGTTGATGGAAGATCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTTGACATGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTC-AG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACCATCAGTACTCGNTATCTGGAAAGCAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCATATGGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455250" ref_strand="+" ref_description="SGN-E455250 [cSTS-25-D10]">
      <seq>attaaagtgaatttccttggaggaaatgaggccctttttattaaggtggtattcgggtcggtttgcatgtacctacactagtattctatcgtatgcttgctaccttttgccaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgagttttgatctcccatggttttgcctacttcattggcccattgggttctaaaaagtgaactttagaacctcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctgttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaaaataaaaataaatatatatgttttgttcaagactaatgattacccaggtggagttgggagtcaccaagggaacaaaatatgaaagaaccatggtgcaatcgtggtatgggagtttgggggttctgtaaccttgtaaggaaaaagagataagaggatgtatttacctttttatagttcttatgctttctactttgttgnatatgttntatgtttttaatggttattcattgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="78454" stop="77238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78153" g_stop="77538" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="646" r_length="622" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E455250" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78153" e_stop="77538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAG-AAAA-AAATATAAATATATATGTTTAGTTCAAGAATAAT-ATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGA-GTATTTACC-TTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCC</genome_strand>
        <mrna_strand>AATGAGGCCCTTTTTATTAAGGTGGTATTCGGGTCGGTTTGCATGTACCTACACTAGTATTCTATCGTATGCTTGCTACCTTTTGCCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAGTTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAGTGAACTTTAGAACCTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAAAATAAAAATAAATATATATGTTTTGTTCAAGACTAATGATTACCCAGGTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAATCGT-GGTATGGGAGTTTGGGGGTTCTGTAACCTTGTAAGGAAAAAGAGATAAGAGGATGTATTTACCTTTTTATAGTTCTTATGCTTTCTACTTTGTTGNATATGTTNTATGTTTTTAATGGTTATTCATTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453499" ref_strand="+" ref_description="SGN-E453499 [cSTS-20-O13]">
      <seq>aaacgatctcatgaacaaggaattttattcctaagtagagccccctaggctgggaagatgtgcccatccaatcttgtgttggacaggaagtttattatgcttttataccctttcttatttattcgtcttagagattggtttagtgatgttggttaatatgtccttcggtagttaaaggtattttggtgaagagggtcaaatgcttctttagttactctaggggtcggtttgcatgtacctacactagtattctatcatatgcttgctaccttctgtcaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgaattttgatctcccatggttttgcctacttcattggcccattgggttctaaaaaatggactttagaacttcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctngttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaataaataaataaatatatatgtttttgttcaagactaatgattacccaggtggagtttgggagtcactaagggaacaaaatatgaaagaaccatggtgcaatcatggtatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="78719" stop="77356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78420" g_stop="78205" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78204" i_stop="78124" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78123" g_stop="77656" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="695" r_length="475" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E453499" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78420" e_stop="78205"/>
          <exon e_start="78123" e_stop="77656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGA-ACCCCTAGGCT-GGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTC--AGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCT-GTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAGAAA-AAA-ATATAAATATATATG-TTTAGTTCAAGAATAAT-ATTACCCAGTTGGAG-TTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAG</genome_strand>
        <mrna_strand>AAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAGCCCCCTAGGCTGGGAAGATGTGCCCATCCAATCTTGTGTTGGACAGGAAGTTTATTATGCTTTTATACCCTTTCTTATTTATTCGTCTTAGAGATTGGTTTAGTGATGTTGGTTAATATGTCCTTCGGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG.................................................................................GGGTCGGTTTGCATGTACCTACACTAGTATTCTATCATATGCTTGCTACCTTCTGTCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAATTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAATGGACTTTAGAACTTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTNGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAATAAATAAATAAATATATATGTTTTTGTTCAAGACTAATGATTACCCAGGTGGAGTTTGGGAGTCACTAAGGGAACAAAATATGAAAGAACCATGGTGCAATCAT-GGTATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E424918" ref_strand="+" ref_description="SGN-E424918 [STM-44-E8]">
      <seq>aaacgatctcatgaacaaggaattttattcctaagtagagccccctaggctgggaagatgtgcccatccaatcttgtgttggacaggaagtttattatgcttttataccctttcttatttattcgtcttagagattggtttagtgatgttggttaatatgtccttcggtagttaaaggtattttggtgaagagggtcaaatgcttctttagttactctaggggtcggtttgcatgtacctacactagtattctatcatatgcttgctaccttctgtcaacacaggtaccgggtaactctgtccaccaacacttgctatatggaaagagatcacccagctttttctattggtgctgggatttgaattttgatctcccatggttttgcctacttcattggcccattgggttctaaaaaatggactttagaacttcagttttcttttaaaacgaaagaaagaaagcaggagcttgaaagtaacgtctagtgcctagcagtgttatcaaaagcaaaaagcgcaaagaagttctatggtctgttggggttgtgggctttagtgaaaaaaggcgcaaagggagaaataaataaataaatatatatgttttgttcaagactaatgattacccacgtggagttgggagtcactaagggaacaaaatatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="78719" stop="77386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78420" g_stop="78205" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78204" i_stop="78124" i_length="81">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78123" g_stop="77686" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="663" r_length="443" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E424918" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E424918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78420" e_stop="78205"/>
          <exon e_start="78123" e_stop="77686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGA-ACCCCTAGGCT-GGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTC--AGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTT-GGGTTGTGGGCTTTAGTG-AAAAAGGCGCAAAGGGAGAAA-AAA-ATATAAATATATATGTTTAGTTCAAGAATAAT-ATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAA</genome_strand>
        <mrna_strand>AAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAGCCCCCTAGGCTGGGAAGATGTGCCCATCCAATCTTGTGTTGGACAGGAAGTTTATTATGCTTTTATACCCTTTCTTATTTATTCGTCTTAGAGATTGGTTTAGTGATGTTGGTTAATATGTCCTTCGGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG.................................................................................GGGTCGGTTTGCATGTACCTACACTAGTATTCTATCATATGCTTGCTACCTTCTGTCAACACAGGTACCGGGTAACTCTGTCCACCAACACTTGCTATATGGAAAGAGATCACCCAGCTTTTTCTATTGGTGCTGGGATTTGAATTTTGATCTCCCATGGTTTTGCCTACTTCATTGGCCCATTGGGTTCTAAAAAATGGACTTTAGAACTTCAGTTTTCTTTTAAAACGAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGTCTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTATGGTCTGTTGGGGTTGTGGGCTTTAGTGAAAAAAGGCGCAAAGGGAGAAATAAATAAATAAATATATATGTTTTGTTCAAGACTAATGATTACCCACGTGGAGTTGGGAGTCACTAAGGGAACAAAATATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478984" ref_strand="+" ref_description="SGN-E478984 [cSTD-8-C5]">
      <seq>aatatacctgggtaatattgacaagaaatggaagactgaagatgtgattgatctactgaagaaggctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattntgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctaaacccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaagggaacctcgtgaggagaaggaaatacnggaccagtccatcttgaagaggcatgaacccagcaaaaaggtaaattacatgagaagatatgatgaggatcatagagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="82347" stop="78515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82047" g_stop="82005" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81928" g_stop="81692" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81439" g_stop="81218" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="502" r_length="222" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81131" g_stop="81020" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="614" r_length="112" r_score="0.929"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130">
            <donor d_prob="0.983" d_score="0.86"/>
            <acceptor a_prob="0.762" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78889" g_stop="78815" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="689" r_length="75" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E478984" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E478984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82047" e_stop="82005"/>
          <exon e_start="81928" e_stop="81692"/>
          <exon e_start="81439" e_stop="81218"/>
          <exon e_start="81131" e_stop="81020"/>
          <exon e_start="78889" e_stop="78815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAG</genome_strand>
        <mrna_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTNTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAAGGGAACCTCGTGAGGAGAAGGAAATACNGGACCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAAAAAGGTAAATTACATGAGAAGATATGATGAGGATCATAGAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E428158" ref_strand="+" ref_description="SGN-E428158 [STM-49-F22]">
      <seq>aatatacctgggtaatattgacaagaaatggaagactgaagatgttattgatctactgaagaaggctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaggtatctcttgctannaccatgccgaagagtaagcaaactaaacgtgtaacccttccttctagaggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="82347" stop="80750"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82047" g_stop="82005" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81928" g_stop="81692" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="280" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81439" g_stop="81218" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="502" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81131" g_stop="81050" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="584" r_length="82" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E428158" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82047" e_stop="82005"/>
          <exon e_start="81928" e_stop="81692"/>
          <exon e_start="81439" e_stop="81218"/>
          <exon e_start="81131" e_stop="81050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAAC</genome_strand>
        <mrna_strand>AATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTTATTGATCTACTGAAGAAGGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTANNACCATGCCGAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTTCTAGAGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405013" ref_strand="+" ref_description="SGN-E405013 [PPC-16-M7]">
      <seq>taacactgaagatgtgattgatctactgaagaaagctggaattgaaaatattgataaggtcacagttatggctaatcctaacaacatcgagcagaatcgagggtttgcatttgttgaacttgaaacaagtaaagaagctcagattgctttcagtaaactccaaaagaaggatgcttttgggaaacacatgaaggtaaaagttgcatgggcacagcctttaattgagccaaatgaagaagaaatgctaaaggttaaatcagtttatgctgaatatttaccttcctcatggattgaagaaaaagtgcgagactacttcggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgccttcgtcaattatgtaagccgtgagtctgctcttgcgtgcattgaggcattcagtcatgaaccagctaatgacagtggatccaaggtaagcattaaagtatctcttgctaaacccatgccgaagagtaagcaaactaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="82236" stop="80777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82017" g_stop="82005" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="0.846"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76">
            <donor d_prob="0.960" d_score="0.00"/>
            <acceptor a_prob="0.952" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81928" g_stop="81692" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="250" r_length="237" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.330" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81439" g_stop="81218" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="472" r_length="222" r_score="0.964"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81131" g_stop="81077" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="527" r_length="55" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E405013" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82017" e_stop="82005"/>
          <exon e_start="81928" e_stop="81692"/>
          <exon e_start="81439" e_stop="81218"/>
          <exon e_start="81131" e_stop="81077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAGGTCAGTTGTGATGAAAGGTTTTGGAATTAATATATTGATGCTTATTGAGTTATTTACCTGAAGTAAATGCTAAGCGGTGCATGAGAAAAGAGGCCTTAATACTCTATTTTGTTTCTTCTTCTTTCCCTAGCATTTCTGACTAACAACTCTATTTTGTTTCTTCTTCTTTCCCTAGCCTTTCTGACTAACAATCTTCATCTATAATACAACTTTTATTTGATTAAAGTACTTAATTGCTTCACCTTTGTCAAGGTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAAC</genome_strand>
        <mrna_strand>TAACACTGAAGAT............................................................................GTGATTGATCTACTGAAGAAAGCTGGAATTGAAAATATTGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGGTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAAGGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAAATGCTAAAG............................................................................................................................................................................................................................................................GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTCGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTCGTCAATTATGTAAGCCGTGAGTCTGCTCTTGCGTGCATTGAGGCATTCAGTCATGAACCAGCTAATGACAGTGGATCCAAG......................................................................................GTAAGCATTAAAGTATCTCTTGCTAAACCCATGCCGAAGAGTAAGCAAACTAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E332552" ref_strand="+" ref_description="SGN-E332552 [cTOD-18-K21]">
      <seq>tcagctgaaaatgaggagtcaaagaaacatagtttacatccgatggaagttgagaaggctgagtgtgttagtgagtttggtgcaactgaaaacacattagaggcttgcatgttggaatgcaaagatagtgttgttgagaatgataatatggattcccttgaaacacaaattgtagttcttgattcagaaaaaaatagtcttaatgtttctactagtgataatgtggattcgagtaaggatcaaaatttggttcagttgggagaggaagggtacagtcaaggcagagaggaaacaaaggaagctgtggatactagtctgaggttgaatgaaggaattctattgagtggggaaatggaggcattagaacggaaaaagaggcggaggacagagatattcattgggggattaggcaaggagtcaaaggaagaggatattaggagtatctttggtgaggttggtgaggttgtggatgtaagattgttgataaatcatgaaacaggaaagaacaaggggtttgctttcctccggtatgcttctgctgctgatgcaaagaaggctgtagaaagatattccaaagttgagatatctgggaagcaatgtcgtgtatcccttgctgagggtaatgacacaatatacctgggtaatattgacaagaaatggaagactgaagatgtgattgatctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="83586" stop="81701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83286" g_stop="82705" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82704" i_stop="82095" i_length="610">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82094" g_stop="82005" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="672" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81928" g_stop="81915" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="686" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E332552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83286" e_stop="82705"/>
          <exon e_start="82094" e_stop="82005"/>
          <exon e_start="81928" e_stop="81915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAGGTAATGTCATTTGGAATTGCTACCTGTAGTCTCCTAAGTAGAACAAAGGTTTGTTTAAGTAGTGCAGTTAGTTGGTCGGTTGTTTGTCTACACGTACAGCTAATAAAATAAGTATGTGGCAAGATTCATATTGATTTTTTGACAGACTTATCAATTTTCTGGATCCTAAAGAATATTTTAAGTTTTAATTGATCTCTGTGCATCAAAAATTTGGTGGAAGCTTATGTAACAAATTTGCATACTCTAATATAGGTTAGAAATAGGTCTATGATATTGGGAAGTAGGTTCTTTGAACTCATTTTTGGATACCTAGCTTGAAATGGATATGGCTACAAATACTCTTTTTTTTCTTTGTTGATAAGTGGTATGGACATTTCTTACTAGTTGCTGTATCCGTACAAGTAATAAACACTACGCTATGAGGAATAATCATGCTGTTGGTGGTGTATTCATCTTTTGATTTTCATATTACACCCAAAATTTAAGGCATGGAGAATAATATATTTTAGCTAAGTTTACTGGTGTAGTCATGCTGGATAGATAATTGCAGTTTCTGCAGTAAGCTGATGTATGCGGTGGACTAATGCATTTATTTGATTTTGAAACCTAGATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACT</genome_strand>
        <mrna_strand>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTGATTGATCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425038" ref_strand="+" ref_description="SGN-E425038 [STM-44-B1]">
      <seq>cgggccccccctcgagtttttactcttttttttcacttttcctggcaacatttttgggcactttcttcttcactatcttcttgacaatctttactgaacgaagattacttttttctgaatcaagaactatgtttcctgtctcaagggaacctatattgtccttggcatctttactttctgaaatgggaagctctaatttaccttcatttacactaacctcagagtccctcattctatcctttcctaagataccctcagcagcaatagtacatttcccaacttctactggatgaaatgtgcccttctcaaagtcaccacactcaccaacagtagcagcactactaggctctaaatatacagtttctagttcaattgtgccttgagagttagctttttcaacatctaatgaatccaaaacagtttctgtgttagcattttctctgcctttttctgattcctcagtctttctactgttctttgcaacggatttgggcaatttcttctttacaatcttcttgacaatctttactgaacggagattacctttttctgaatcaacaactacatttcctgtctcaagggaacctagattgtcctttgcatcattacattccaaaattggaagctctaacttacctttagctacagtaacctcacagtccttcattccatcctttcctaacataacctcgacagcaataataccttcctcaacttctattggctgaaaattgcccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="83101" stop="84421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83408" g_stop="84121" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="740" r_length="714" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E425038" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E425038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83408" e_stop="84121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCCCTTTTCCTGGCAACAAGTTTGGGCACTTTCTTCTTCACAATCTTCTTGACAATCTTTACCGGACGAAGATTACCTTTTTCTGAATCAAGAACTGTGTTTCCTGTCTGGAGTGAACCTATATTGTCCTTGGCACCTTTATTTTCTGAAATGGGAAGCTGTAATTTACCTTCGTTTACACTAACCTCAGAGTCCATCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACCTTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACCCTCACTAACTGCAGCAGCATTACAAGGCTCTACATATACAGTTTCTAGTTCAATTGTGCCTCGAGAGTTAGCTTTTTTAACATCTAATGAATCCAAAACAGTTTCTGCGTCAGCAATTTCCCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCACTTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAGGGGAACCTAGATTGTCCTTTGCATCATTACATCCCAAAATTGGAAGCTCCAACTTATCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAGCATAACCTCAACAGCAATAATACCTTCCTCAACTTCTTTTGGCTGAAAATTGTCCTTC</genome_strand>
        <mrna_strand>TTTTTTTCACTTTTCCTGGCAACATTTTTGGGCACTTTCTTCTTCACTATCTTCTTGACAATCTTTACTGAACGAAGATTACTTTTTTCTGAATCAAGAACTATGTTTCCTGTCTCAAGGGAACCTATATTGTCCTTGGCATCTTTACTTTCTGAAATGGGAAGCTCTAATTTACCTTCATTTACACTAACCTCAGAGTCCCTCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACATTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACACTCACCAACAGTAGCAGCACTACTAGGCTCTAAATATACAGTTTCTAGTTCAATTGTGCCTTGAGAGTTAGCTTTTTCAACATCTAATGAATCCAAAACAGTTTCTGTGTTAGCATTTTCTCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCAATTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAAGGGAACCTAGATTGTCCTTTGCATCATTACATTCCAAAATTGGAAGCTCTAACTTACCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAACATAACCTCGACAGCAATAATACCTTCCTCAACTTCTATTGGCTGAAAATTGCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453753" ref_strand="+" ref_description="SGN-E453753 [cSTS-21-C7]">
      <seq>ccactctacaatttctaaaatcagtgagcatccggagcaatccctgagctcccaagttccagaaataaacacctggggaaaccggagttgagttgaatgaagctgaccaagtcacgcccgcccaaaaaagtggaaattgaagctgttggggaagcagaaagtagggcagaagtggtaagaaaaaaagtggtgaaaaagaccagtaaagattgtcaagaagattgtcaagaaggaaagtgcccaaatctgttgcaaagaacagtgaaatgacagacgaatcagaaaaaggctacgcagaaactgttttggattcattcgaggttgaaaaaactagctctcgaggcacaattgaaccagaaactgtatatttagagtctagtagtgctgctacagttggtgagggtggtaactcggagaagggcaattttcagccaatagaagttgaggaaggtattattgctgtcgaggttatgttaggaaaggatggaatgaaggactgtgaggttactgtagctaaaggtaagttagagcttccaattttggaatgtaatgatgcaaaggacaatctangttcccttgagaccaggaaatgtagttgttgattcagaaaaaggtaatctccgttcagtaaagattgtcaagaagattgtaaagaagaaattgcccaaatccgttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="84830" stop="83559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84529" g_stop="83859" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E453753" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84529" e_stop="83859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACA-CTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACG-CCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGG-AGCAGAAAGTAGGGCAG-AGTGGTAAG-AAAAAAGTGGTGAAAAAGA-CGGTAAAGATTGTTAAGAAGATTATCAAG-AGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGA-CAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAAGTGCCCAAATCCGTTGCAA</genome_strand>
        <mrna_strand>CCACTCTACAATTTCTAAAATCAGTGAGCATCCGGAGCAATCCCTGAGCTCCCAAGTTCCAGAAATAAACACCTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGTCACGCCCGCCCAAAAAAGTGGAAATTGAAGCTGTTGGGGAAGCAGAAAGTAGGGCAGAAGTGGTAAGAAAAAAAGTGGTGAAAAAGACCAGTAAAGATTGTCAAGAAGATTGTCAAGAAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGTGAAATGACAGACGAATCAGAAAAAGGCTACGCAGAAACTGTTTTGGATTCATTCGAGGTTGAAAAAACTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATATTTAGAGTCTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGGCAATTTTCAGCCAATAGAAGTTGAGGAAGGTATTATTGCTGTCGAGGTTATGTTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGGTAAGTTAGAGCTTCCAATTTTGGAATGTAATGATGCAAAGGACAATCTANGTTCCCTTGAGACCAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAATTGCCCAAATCCGTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E425037" ref_strand="+" ref_description="SGN-E425037 [STM-44-B1]">
      <seq>ctactctacaatttctaaaatcagtgagcatccggagcaatccctgagctcccaagttccagaaataaacactggggaaaccggagttgagttgaatgaagctgaccaagtcacgccgccaaaaacagtggaaattgaagctgttggggagcagaaagtagggcagagtggtaagaaaaaagtggtgaaaaagacagtaaagattgtcaagaagattgtcaagaggaaagtgcccaaatctgttgcaaagaacagtgaaatgacagacgaatcagaaaaaggctacgcagaaactgttttggattcattcgaggttgaaaaaactagctctcgaggcacaattgaaccagaaactgtatatttagagtctagtagtgctgnctacagttggtgagggtggtaactcggagaagggcaattttcagccaatagaagttgaggaaggtattattgctgtcgaggttatgttaggaaaggatggaatgaaggactgtgaggttactgtagctaaaggtaagttagagcttccaattttggaatgtaatgatgcaaaggacaatctaggttcccttgagacagaaatgtagttgttgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="84829" stop="83633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84529" g_stop="83933" g_length="597"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E425037" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E425037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84529" e_stop="83933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACGCCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACGGTAAAGATTGTTAAGAAGATTATCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTG-CTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGACAGGAAATGTAGTTGTTGATTC</genome_strand>
        <mrna_strand>CTACTCTACAATTTCTAAAATCAGTGAGCATCCGGAGCAATCCCTGAGCTCCCAAGTTCCAGAAATAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGTCACGCCGCCAAAAACAGTGGAAATTGAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACAGTAAAGATTGTCAAGAAGATTGTCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGTGAAATGACAGACGAATCAGAAAAAGGCTACGCAGAAACTGTTTTGGATTCATTCGAGGTTGAAAAAACTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATATTTAGAGTCTAGTAGTGCTGNCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGGCAATTTTCAGCCAATAGAAGTTGAGGAAGGTATTATTGCTGTCGAGGTTATGTTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGGTAAGTTAGAGCTTCCAATTTTGGAATGTAATGATGCAAAGGACAATCTAGGTTCCCTTGAGACA-GAAATGTAGTTGTTGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E326352" ref_strand="+" ref_description="SGN-E326352 [cTOC-14-L16]">
      <seq>tcagctgtcacatttatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcaactatcagacaagatgcaatgaataaagccaaggcatttgatgagaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89257" stop="92343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89557" g_stop="89646" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="197" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="273" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="345" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="408" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92043" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="554" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E326352" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89557" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACA</genome_strand>
        <mrna_strand>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAACTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202939" ref_strand="+" ref_description="SGN-E202939 [cLEB-1-N10]">
      <seq>gcacgagatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89272" stop="92337"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89564" g_stop="89646" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="189" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="265" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="337" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="400" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92037" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="540" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E202939" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89564" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGA</genome_strand>
        <mrna_strand>GCAC-GAGATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281348" ref_strand="-" ref_description="SGN-E281348 [cLEL-1-H4](-)">
      <seq>gcacgagatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaatcatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89272" stop="90290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89564" g_stop="89646" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="189" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="265" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E281348" ref_strand="-">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>266</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281348" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89564" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG</genome_strand>
        <mrna_strand>GCAC-GAGATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATCATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276159" ref_strand="+" ref_description="SGN-E276159 [cLEN-21-G1]">
      <seq>tttatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89269" stop="92385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="89646" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="185" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="261" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="333" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92085" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="584" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E276159" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276159" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGA</genome_strand>
        <mrna_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E334658" ref_strand="+" ref_description="SGN-E334658 [cTOD-23-F21]">
      <seq>tttatatcttctcctcttccactcacgctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcatattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89269" stop="92239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89569" g_stop="89646" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="185" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="261" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="333" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="396" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="91939" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="438" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E334658" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89569" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="91939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAA</genome_strand>
        <mrna_strand>TTTATATCTTCTCCTCTTCCACTCACGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCATATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339802" ref_strand="+" ref_description="SGN-E339802 [cTOE-16-N2]">
      <seq>cctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcggtctactcattgcttccaggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89281" stop="92345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89581" g_stop="89646" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="173" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="249" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="321" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91049" i_length="106">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91050" g_stop="91130" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="402" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92045" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="550" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E339802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89581" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91050" e_stop="91130"/>
          <exon e_start="91898" e_stop="92045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATC</genome_strand>
        <mrna_strand>CCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG..........................................................................................................TCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E697895" ref_strand="+" ref_description="SGN-E697895 [FA04CE05]">
      <seq>cccgttcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgaccccggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89295" stop="93845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89592" g_stop="89646" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="162" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="238" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="310" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="373" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="726" r_length="353" r_score="0.994"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93545" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="778" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E697895" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89592" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCT</genome_strand>
        <mrna_strand>CCCGTTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACCCCGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E202829" ref_strand="+" ref_description="SGN-E202829 [cLEB-1-E8]">
      <seq>gcacgagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89298" stop="92433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89595" g_stop="89646" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="158" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="234" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="306" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="369" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92133" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="605" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E202829" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89595" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGT</genome_strand>
        <mrna_strand>GCAC-GAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E281521" ref_strand="-" ref_description="SGN-E281521 [cLEL-1-F9](-)">
      <seq>gcacgagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89298" stop="90264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89595" g_stop="89646" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="158" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89964" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="211" r_length="53" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E281521" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281521" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89595" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGC</genome_strand>
        <mrna_strand>GCAC-GAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456322" ref_strand="+" ref_description="SGN-E456322 [cSTS-29-M21]">
      <seq>cgaggagattttaaactcaataatgccaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcangtatgttaatgctggagctgcctggctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89413" stop="93824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89618" g_stop="89646" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.724"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="136" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="212" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="284" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="347" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="700" r_length="353" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="0.96"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93524" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="731" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E456322" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89618" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACGGATTTCAAACTCAATAATG-CAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAAT</genome_strand>
        <mrna_strand>CGA-GGAGATTTTAAACTCAATAATGCCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAN...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554406" ref_strand="+" ref_description="SGN-E554406 [cTSC-4-D16]">
      <seq>acggatttcaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttggctggtacaaaaacgagagaaaaatggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89322" stop="93891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89622" g_stop="89646" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="342" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="695" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93591" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="794" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E554406" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89622" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTT-GCTGGTACAAAAACGAGAGAAAAATGGAATT</genome_strand>
        <mrna_strand>ACGGATTTC-AACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGGCTGGTACAAAAACGAGAGAAAAATGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554093" ref_strand="+" ref_description="SGN-E554093 [cTSC-3-D16]">
      <seq>acggatttcaactcaataatgcaggaggtaagaacagtacgagtggggaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagcaaagcccaagatgttgtctcaaatgcgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagcccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcataggcttcaagtgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89322" stop="92475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89622" g_stop="89646" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="342" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92175" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="621" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E554093" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89622" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAG-CCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTC</genome_strand>
        <mrna_strand>ACGGATTTC-AACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGGAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGCAAAGCCCAAGATGTTGTCTCAAATGCGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCATAGGCTTCAAGTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E423821" ref_strand="+" ref_description="SGN-E423821 [STM-42-J21]">
      <seq>atagattttagactcaataatgcatgaggtaagaacagtacgagtaggtaatgtatcacatctggcagctgacagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtacatattacacaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtatagcccgagatgttgtctcaaatgtgttggcgaaaggttcagctatcagactagatgcaatgaataaagccaaggcatttgatgagacacgtcagctaatagccactgcatctgcccgagtcatgttctttgaccgaagagttgggctaacagaccagcttacgggtggaatttctgttgtgaatgacaaagttaaatctgctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89417" stop="92459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89622" g_stop="89646" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="132" r_length="107" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="208" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="280" r_length="72" r_score="0.917"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.88"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="343" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92159" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="605" r_length="262" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E423821" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89622" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATC</genome_strand>
        <mrna_strand>ATAGATTTTAGACTCAATAATGCAT...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCACATCTGGCAGCTGACAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTACATATTACACAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTATAGCCCGAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACTAGATGCAATGAATAAAGCCAAGGCATTTGATGAGACACGTCAGCTAATAGCCACTGCATCTGCCCGAGTCATGTTCTTTGACCGAAGAGTTGGGCTAACAGACCAGCTTACGGGTGGAATTTCTGTTGTGAATGACAAAGTTAAATCTGCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485222" ref_strand="+" ref_description="SGN-E485222 [cSTE-17-E9]">
      <seq>tagattttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggtaatatagtaatccctctatctcattttatgtgtcacttttcggatttcgagattcaaacaagtctatctttgaccgtaagttttcatagatcttttaaacattttgaattatcaattattgtgacttatagtactttttatgtagtttacaaatatagaaatttcattttaaaaaaaatgaagatttcatgcgcaaattttcggtcaaacttaaactgctggactctcgaaaaacgaaaagtgtcacataaattgggacggacgganggagtaaataaagttggtggataattcttccttcaagttattaaaaagttgggcatcttttntttttttttaatttattttttatgacaaggggcacttgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89325" stop="91772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89623" g_stop="89646" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91470" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="683" r_length="404" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E485222" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89623" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAA-TTCA-TTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGAC--A--AAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</genome_strand>
        <mrna_strand>TAGATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCT--CTATCT--CATTTTATGTGTCACTTTTCGGATTTCGAGATTCAAACAAGTCTATCTTTGACCGT-AAGTTTTCATAGATCTTTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTTTATGTAGTTTACAAATATAGAAATTTCATTTTAAAAAAAATGAAGATTTCATGCGCAAATTTTCGGTCAAACTTAAACTGCTGGACTCTCGAAAAACGAAAAGTGTCACATAAATTGGGACGGACGGANGGAGTAAATAAAGTTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTNTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427116" ref_strand="+" ref_description="SGN-E427116 [STM-47-F24]">
      <seq>tagattttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggtaatatagtaatccctctatctcattttatgtgtcacttttcggatttcgagattcaaacaagtctatctttgaccgtaagttttcatagatcttttaaacattttgaattatcaattattgtgacttatagtactttttatgtagtttacaaatatagaaatttcattttaaaaaaaatgaagatttcatgcgcaaattttcggtcaaacttaaactgctggactctcgaaaaacgaaaagtgtcacataaattgggacggacggagggagtaaataaagttggtggataattcttccttcaagttattaaaaagtgggcatcttttttttttttttaatttattttttatgacaagggcaacttgcagccgctaccctttgggtgcgcacagggtaaaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89325" stop="91824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89623" g_stop="89646" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="131" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="207" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="279" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91470" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="682" r_length="403" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E427116" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89623" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAA-TTCA-TTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGAC--A--AAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</genome_strand>
        <mrna_strand>TAGATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCT--CTATCT--CATTTTATGTGTCACTTTTCGGATTTCGAGATTCAAACAAGTCTATCTTTGACCGT-AAGTTTTCATAGATCTTTTAAACATTTTGAATTATCAATTATTGTGACTTATAGTACTTTTTATGTAGTTTACAAATATAGAAATTTCATTTTAAAAAAAATGAAGATTTCATGCGCAAATTTTCGGTCAAACTTAAACTGCTGGACTCTCGAAAAACGAAAAGTGTCACATAAATTGGGACGGACGGAGGGAGTAAATAAAGTTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAG-TGGGCATCTTTTTTTTTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419767" ref_strand="+" ref_description="SGN-E419767 [STM-30-M17]">
      <seq>attttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaatgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89326" stop="93825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89626" g_stop="89646" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="128" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="204" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="692" r_length="353" r_score="0.986"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93525" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="724" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E419767" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89626" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATG</genome_strand>
        <mrna_strand>ATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAATGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487448" ref_strand="+" ref_description="SGN-E487448 [cSTE-25-H13]">
      <seq>attttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgagagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaatgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggatgggatttctgttgtaaatgagagagttaaatctgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89326" stop="92459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89626" g_stop="89646" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="128" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="204" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="276" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="339" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92159" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="601" r_length="262" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E487448" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89626" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATC</genome_strand>
        <mrna_strand>ATTTTAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAGAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAATGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGATGGGATTTCTGTTGTAAATGAGAGAGTTAAATCTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560625" ref_strand="+" ref_description="SGN-E560625 [20308]">
      <seq>atttaaactcaataatgcaggaggtaagaacagtacgagtaggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgagcatattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaaatattactcaggaagaagactatgttccatcatctgagactcgggaagtcaggttagttgataatgccgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcaaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89326" stop="92393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89626" g_stop="89646" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="127" r_length="107" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="203" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="275" r_length="72" r_score="0.931"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.90"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="338" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92093" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="534" r_length="196" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E560625" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560625" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89626" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAG</genome_strand>
        <mrna_strand>ATTT-AAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTAGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGAGCATATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAATATTACTCAGGAAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGTTAGTTGATAATGCCGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCAAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E718628" ref_strand="+" ref_description="SGN-E718628 [FC05AH12]">
      <seq>tggcggccaaatcggccgaattgatgcaggaggtaaccctgaacgagtgggtaatgtatcagatctggcagctgagacagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89432" stop="94514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="135" r_length="106" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="211" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="283" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="699" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="700" r_stop="823" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="94196" g_stop="94214" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="842" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E718628" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E718628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCT</genome_strand>
        <mrna_strand>GAGGTAA-CCCTGAACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGACAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269295" ref_strand="+" ref_description="SGN-E269295 [cLEM-18-D1]">
      <seq>atgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgtttcatttaaagatcctaaagcgcttgaaattgctttgctgttggcgggagcaaccatagtggatcagattgttacgataaagcaggcagaagactatgttccatcatctgagactccggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89447" stop="91415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89747" g_stop="89828" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="158" r_length="76" r_score="0.947"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="0.92"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="230" r_length="72" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="0.92"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91068" g_stop="91115" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="278" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E269295" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89747" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCT</genome_strand>
        <mrna_strand>ATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTTCATTTAAAGATCCTAAAGCGCTTGAAATTGCTTTGCTGTTGGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTTACGATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCCG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427117" ref_strand="-" ref_description="SGN-E427117 [STM-47-F24]">
      <seq>aaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgcccgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttttgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagacaaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcggtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgcttttagtaaagtagccaaggcagggcaagttgctggtacaaaaacgagagagaaatggaattttgcattgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagccgaatgtatgttggagttgctaagttgcctctgtcaaatagcttgggattccaataactatttccttgcacatctagaaattgggatccggtatgcagattgcagatcgtctgtgtcaaattcaagcaagttttatctgtgatgtgattcttttcactgttaatttttcttcccattttattgtggaatgtggagtggtgtggtgaatacaactatacgaggttgtgtaattcttttgtttgtaagccttcaaagtcacgataggttaggagcttgtattgatatcatatctttcttggtgaggatgaattttattagaaagatttctgatttgatgtttatattacgatgacatccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="91685" stop="94893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91985" g_stop="92250" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="390" r_length="124" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94594" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="778" r_length="388" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E427117" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427117" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="91985" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATA-GTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAG</genome_strand>
        <mrna_strand>AAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCCCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTTTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGACAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCGGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTTAGTAAAGTAGCCAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAGAAATGGAATTTTGCATTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGCCGAATGTATGTTGGAGTTGCTAAGTTGCCTCTGTCAAATAGCTTGGGATTCCAATAACTATTTCCTTGCACATCTAGAAATTGGGATCCGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTTATCTGTGATGTGATTCTTTTCACTGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGA-----GTGGTGTGGTG-----AATACAACTATACGAGGTTGTGTAATTCTTTTGTTTGTAAGCCTTCAAAGTCACGATAGGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGATGAATTTTATTAGAAAGATTTCTGA-T-TTGATGTTTATATTACGATGACATCCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252166" ref_strand="+" ref_description="SGN-E252166 [cLEG-8-F3]">
      <seq>aaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcattagacgaaatttggtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcaaattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctaatagttaacccctcttgccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="91739" stop="94753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92039" g_stop="92250" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="336" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94453" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="599" r_length="263" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E252166" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92039" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCA-TAGACG-AA--T-GTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACG</genome_strand>
        <mrna_strand>AAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATTAGACGAAATTTGGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAAATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTAATAGTTAACCCCTCTTGCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369391" ref_strand="+" ref_description="SGN-E369391 [TUS-23-C21]">
      <seq>aagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagagattttcagactcttgatgtttatattacgatgacctccagcatatattccactcttagattagtttattcattattaatatttcatgttgttggccaatttacgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="91789" stop="94970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92089" g_stop="92250" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="286" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94662" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="754" r_length="468" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="755" polyA_stop="791"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E369391" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92089" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGA-TTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCA-TATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</genome_strand>
        <mrna_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTTCAGACTCTTGATGTTTATATTACGATGACCTCCAGCATATATTCCACTCTTAGATTAGTTTATTCATTATTAAT-ATTTCATGTTGTTGGCCAATTTACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242558" ref_strand="+" ref_description="SGN-E242558 [cLED-30-J3]">
      <seq>aagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="91789" stop="94735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92089" g_stop="92250" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="286" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94435" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="526" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E242558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92089" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGT</genome_strand>
        <mrna_strand>AAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E378521" ref_strand="+" ref_description="SGN-E378521 [TUS-23-C21]">
      <seq>gctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagagatttcagactcttgatgtttatattacgatgacatccagcatatattccactcttagataagtttattcatattaatcatttcatgttgttggtcaatttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="91798" stop="94960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92098" g_stop="92250" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="277" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94196" g_stop="94660" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="742" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E378521" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92098" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</genome_strand>
        <mrna_strand>GCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224699" ref_strand="+" ref_description="SGN-E224699 [cLEL-27-L2](-)">
      <seq>gatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="93896" stop="94856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94196" g_stop="94555" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="361" polyA_stop="378"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E224699" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94196" e_stop="94555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAG</genome_strand>
        <mrna_strand>GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224623" ref_strand="+" ref_description="SGN-E224623 [cLEL-27-L2](-)">
      <seq>agatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcccgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="93915" stop="94856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94215" g_stop="94555" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="342" polyA_stop="359"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E224623" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94215" e_stop="94555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAG</genome_strand>
        <mrna_strand>AGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCCCGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E547831" ref_strand="+" ref_description="SGN-E547831 [TUS-71-O16]">
      <seq>gtttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="98944" stop="99783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99244" g_stop="99483" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E547831" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99244" e_stop="99483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>GTTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E549600" ref_strand="+" ref_description="SGN-E549600 [TUS-71-O16](-)">
      <seq>gtttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="98944" stop="99783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99244" g_stop="99483" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E549600" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99244" e_stop="99483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>GTTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E364331" ref_strand="+" ref_description="SGN-E364331 [cLPP-20-J2]">
      <seq>tttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="98945" stop="99783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99245" g_stop="99483" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E364331" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99245" e_stop="99483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>TTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375001" ref_strand="-" ref_description="SGN-E375001 [TUS-36-G7](-)">
      <seq>tttttttttttttttttttttttttttggagaaaatgtaactgttttatcaaaaaacttatacaaacacgtcaaattcagggctgcaaggggtaaagatgataaccatatgaaggagttatacatgcttttgttcactgtatactttcttttgaatttttacttctctgaatctccatccactaaattaatttgaggatgactaaaaaataggctaaaaattgtacgtggtttttgcactgggacaagaatcatcacaacagatatctaacaactacagcaaaaagtgtaatttacagaccgagccttttgggtcgtaaataagtagttgagcctttcttcaacccaggcataaaaacctgttgcagttcttttgctctcttttccttctccttctccttgtttcgtctgtcagcttcagcctgtactttacgcaacttctccatttcttcctccatggcagttttctcctctttctgtttctttttatgttccagcattgatgtatcaaaatctttcacggagaaaaacatgggccccagttcagccaaccagtgaggctccacagctgtcacacactgcatgtactcctttgatgtcaaaataagctcatgataaaccacgttatcaggagtgtaacccaatccatagagagccctagtgggatgaagggggcaaggcattccattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="88599" stop="101014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99850" g_stop="99877" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.500"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99878" i_stop="100052" i_length="175">
            <donor d_prob="0.840" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="100053" g_stop="100714" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="690" r_length="662" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E375001" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375001" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99850" e_stop="99877"/>
          <exon e_start="100053" e_stop="100714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATCTTTTTCATATAATTTTTAAAAGGTATGAACAACAAATTTCCAAAAACATACACGATTCTATCTGCAACTGGTGCAAAGCATGTTGATAAACAAAGAAATTGATTGAAGATTCTCCTTTATATATCACTCCAGATAAGAAGATAATGTAATACAACAATAGTAGCAAATGTGCAATCTGAATGCTGCCAAAAGCAAAGGAGAAAATGTAACTGTTTTATCAAGAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAGAGATAGGCTAAGAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTCTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAGAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAGAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAGATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCACTAGTGGGATGAAGGTGGCAAGGCATTCCATTCC</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTG...............................................................................................................................................................................GAGAAAATGTAACTGTTTTATCAAAAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAAAAATAGGCTAAAAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTTTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAAAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAAAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAAATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCCCTAGTGGGATGAAGGGGGCAAGGCATTCCATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E376803" ref_strand="+" ref_description="SGN-E376803 [TUS-19-D9]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacccaagaggctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttagcctatctcttagtcatcctcaaattaatttagtggatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101136" stop="99897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100197" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E376803" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E376803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E615857" ref_strand="+" ref_description="SGN-E615857 [65660]">
      <seq>catggaggaagaaatggagaagttgcgtacagtacaggctgaagctgagagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctggtttgaagaaaggctcgactacttatttacgacctaagaggctcggtctgtaaattacattttttgctgtagttgctagatatctggtgtgatgactcttgtcccagtgcaaaaaccacgtacaattctcagcccatctcttagtcatcctcaaattaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="100782" stop="99907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100482" g_stop="100207" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="277" polyA_stop="286"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E615857" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100482" e_stop="100207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTA</genome_strand>
        <mrna_strand>CATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTGAGAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGTTTGAAGAAAGGCTCGACTACTTATTTACGACCTAAGAGGCTCGGTCTGTAAATTACATTTTTTGCTGTAGTTGCTAGATATCTGGTGTGATGACTCTTGTCCCAGTGCAAAAACCACGTACAATTCTCAGCCCATCTCTTAGTCATCCTCAAATTAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375002" ref_strand="+" ref_description="SGN-E375002 [TUS-36-G7]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacccaagaggctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttagcctatctcttagtcatcctcaaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101136" stop="99910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100210" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E375002" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAAT</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711462" ref_strand="+" ref_description="SGN-E711462 [FB02AC10]">
      <seq>ccattaaaagtgatgctgctaaggaaaagttttttgtgccagcctctgatcaccttacactgcttaatgtttaccatccaatggaaagctaatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacacaaggctaaggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggacctgattgggatgttgtaaagaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcgtcccactaatgctctctatggattgggttacactcctgataacgtggtttatcatgaccttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacataaagaggagaaaactgccatggaggaagaaatggagaagttgcttaaagtacaggctgaagctgacagacgaaacaacgagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaagctcaactacttatttacgacccaagaagctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttaccctatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101317" stop="99930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101023" g_stop="100230" g_length="794"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E711462" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101023" e_stop="100230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCA-GCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTC</genome_strand>
        <mrna_strand>CCATTAAAAGTGATGCTGCTAAGGAAAAGTTTTTTGTGCCAGCCTCTGATCACCTTACACTGCTTAATGTTTACCATCCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACACAAGGCTAAGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGACCTGATTGGGATGTTGTAAAGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCGTCCCACTAATGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGACCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACATAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCTTAAAGTACAGGCTGAAGCTGACAGACGAAACAACGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAAGCTCAACTACTTATTTACGACCCAAGAAGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTACCCTATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E230938" ref_strand="+" ref_description="SGN-E230938 [cLED-5-A5]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacataaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagccaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101136" stop="100036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100336" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E230938" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACC</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACATAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCCAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240704" ref_strand="+" ref_description="SGN-E240704 [cLED-21-J6]">
      <seq>gacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101136" stop="100041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100836" g_stop="100341" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E240704" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100836" e_stop="100341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTA</genome_strand>
        <mrna_strand>GACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E231698" ref_strand="+" ref_description="SGN-E231698 [cLED-4-D13]">
      <seq>acgagagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101137" stop="100131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100842" g_stop="100431" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E231698" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100842" e_stop="100431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGA</genome_strand>
        <mrna_strand>ACGAGAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E456614" ref_strand="+" ref_description="SGN-E456614 [cSTS-30-E5]">
      <seq>atcaatacaggggggactggtgtaatgaccactttttacaggtcaaaggtctgcgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatatgctctgcctacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtacagtacaggctgaagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101233" stop="100135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100933" g_stop="100434" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E456614" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100933" e_stop="100434"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGAC</genome_strand>
        <mrna_strand>ATCAATACAGGGGGGACTGGTGTAATGACCACTTTTTACAGGTCAAAGGTCTGCGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATATGCTCTGCCTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E442500" ref_strand="+" ref_description="SGN-E442500 [cSTA-33-D14]">
      <seq>ggtgtaatgaccactttttacaggtcaaaggtctgcgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatatgctctgcctacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtacagtacaggctgaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101215" stop="100136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100915" g_stop="100436" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E442500" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100915" e_stop="100436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTG</genome_strand>
        <mrna_strand>GGTGTAATGACCACTTTTTACAGGTCAAAGGTCTGCGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATATGCTCTGCCTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTACAGTACAGGCTGAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E739475" ref_strand="+" ref_description="SGN-E739475 [LC17CE02]">
      <seq>caaataataaaaaaatacataaaaaaaattaaaaaaacataaaataaataaaaaataaaatttcctggggggggggcccgggcccttttcccctgaaggtgtactttcataaaatgggtatggatgctctgcaagtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagctggtagaactggcccaggaacttgttaccggctttatactgagaatgcgtatgagaatgaaatgctgcaaagtcccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgtttaaatgaggttctgactattgtttctatgctttcagtgccttctgttttctttagacccaaggatagggctgaggaaagtgatgctgctagggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttaccagcaatggaaagctaatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacgcaaggctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcaactaggctgaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101792" stop="100437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101524" g_stop="100737" g_length="788"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="869" r_length="788" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E739475" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101524" e_stop="100737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGA</genome_strand>
        <mrna_strand>GCCCTTTTCCCCTGAAGGTGTACTTTCATAAAATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAACTAGGCTGAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E437089" ref_strand="+" ref_description="SGN-E437089 [cSTA-2-L17]">
      <seq>aaagccccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgcttaaatgaggttctgactattgtttctatgctttcagtgccttccgttttctttagacccaaggatagggctgaggaaagtgatgccgctagggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101656" stop="100650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101356" g_stop="100950" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E437089" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101356" e_stop="100950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTAC</genome_strand>
        <mrna_strand>AAAGCCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGCTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCCGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCCGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602738" ref_strand="+" ref_description="SGN-E602738 [55810]">
      <seq>gtgatgaggcatctttccagaagaaagaggtggaattggccaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacagagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaggacccaacgtcagatatggccataatttcacgtaaaggttcagctctagttcgggaaatacgtgaaaaacaaaacatgcacaagtctcgtcaaagattttgggagctggctggttcaaaactcggagatatccttggtgtggagaagagtgcagagcaggttgatgcggatactgctacagtgggcgaggatggtgaggtggattttaaaggagaagctagattctcacagcacttaaagaaaggggaagctgtcagtgattttgcattatcaaaaacactttcacagcaaaggcagtacctgcccatcttctctgtgcgagatgatttattgcaggtggttcgcgaaaaccaggtggtggttgttgttggagaaactggttctggaaagacaacacagctaactcagtaccttcatgaagatggctatacaagtaatgggattgttggttgcaccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="106329" stop="102240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106029" g_stop="105980" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105979" i_stop="104778" i_length="1202">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104777" g_stop="104600" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="228" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100">
            <donor d_prob="0.796" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104499" g_stop="104270" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="458" r_length="230" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="104269" i_stop="104173" i_length="97">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104172" g_stop="103996" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="635" r_length="177" r_score="0.983"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="103995" i_stop="102781" i_length="1215">
            <donor d_prob="0.956" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="102780" g_stop="102709" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="707" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="102708" i_stop="102592" i_length="117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="102591" g_stop="102540" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="708" r_stop="758" r_length="51" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E602738" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106029" e_stop="105980"/>
          <exon e_start="104777" e_stop="104600"/>
          <exon e_start="104499" e_stop="104270"/>
          <exon e_start="104172" e_stop="103996"/>
          <exon e_start="102780" e_stop="102709"/>
          <exon e_start="102591" e_stop="102540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTGGTAAGCACAGAGACTACAAAAGCCTTAAATCATGATTTTGGCATATGTTTGCATTTGTGTGTTTGGGGGAGAACTAGCATACTCTCGGATGTTACTGGGACTCGGTGGAAGTTGTAGCAATATGAATGACTGGTGCTTTAAGCTGATTAGAAAACTTACTTGATGGTTAGTGGTTTAGCTTGCACTTGACAACTCGTGTCACTCTCTGCATAACAATCTGTTGTGTCATAGCTTGCTGTATTTCGAGGCATTATGGATTTATGTTTCTGCTTTGCGATCCCTCTATCATCAATACTGATGATGAGAATTAGATGAATTTATATAATTCTCTGGTGCGAAGGGAACTAGAGGGCACATATCCTTAATTGCCGTTTGATGCATGAGCATGTTTCACTATTGTGATTGTGTCAGACAATGTGCTTTTCCTACTGATTGAATTCCCTTTGTGTAGACCTGCTGTCTCTTTTAGAGATGTATTTTGTATTATCCTATTTTAGAGCATTGTTGAACATCTGAGAGGTCACTAAGACGTTTGAACAGAAAAGATGGAAGACCTTGCACAGATATTATCCTTTTGACCCTAAACTGAAATTGCAGTATTTTTCTTTCTTTTACATCCAGATGTATCTCGATTTTGCACCTCTGTGGTGCCATCATCTGCATAACATAGTTGCTTTCGATTAAAGAAAAATGAATTTTACATCTGAGAGGTATTTAAATTATAACATGTTGTTTTCCAATGCAAAACTTTGAAACTTGGTTTGAAATTCAGGAAATTATAGGGAATTGCGAGATCAAAATAGTAGTCATTTATAGCCGATGAGCTGGTTCTTCTTAGAATCTGAGCTAAAATGACTATTGGGGAGAGAACACAGAGATTTACTGGCTAAGTCAAGATATCATTTTAATTTAACATCAAGAGCTTCTTGGACCTTTCCTGATGAGACAGTCTGTTCTCAGTGGGTTAGCATAATATCAAGAACTTCTGTAGTCTATCAATTGTAACTATACTATGTAGGATTGGTGATGAGATAGTCTGTTCTCTGTGGGTTGGCATAATATCAAGAACGTTTGTAGTCTATCAAACGTAACTATACTGTGTAGTTAAGGATTGGTTAGATACAATGAACACTAATACAATGCATGTATGGTCTGCCATTGACGTTGTCTTTCTCTCTCTCCCTGCCCTCCACTTGTAACAGGTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGACAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTTGAGAAGAGTGCAGAGCAGGTACCTTATGTTTCCATGAAATTGAACATACTGTGTTAATCTGGTGTGTTTCAGGTTGTAGACGATATAACCGGGATTCCCTTTCACCTTATGCTAGGTTGATGCGGATACTGCTACAGTGGGCGAGGATGGAGAGGTTGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTATCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAGGTTTGACCCATTTTCTCATTCTGATACTCTGGGGAGTTTATTGAATGATGAGTTACTGTACCTGCTGATTGGCTTTTCATGTCTGTGAAGACATGTAGGTGCCACATACAGCGAAGTATGTAAACCTAATAAAAATGAGTTACTGAACCTGTTATCCACCTTAACACATATCTAGAAACTTTTACTTTGAACTTCATTGGAATTAGTTAAATGGTAAAATTGACCTGATGTGCCGTAATTAGGACTTGGAGCTCTGCATACAAATTAGATGCTAAGCTGCTTTCTTAAAGTCTATTGGTGTCCTTTTCCTTGGGATAAATTCACCAAATATTTACTTGTGAAAAACAACGTTTACTCTTAATGGTTTTTTTATAACCATGGTGTCCAGGCCATCTAATTCCATGGGGTGCTTGCTACCTCCTACCAACACAAGTACCGAGTAATCTATCACTAAAGAAGATATCACCTAGTGTTTTGTCTCCGTTGGCTTTTGAACCTGAGATCTCATGGTTCTCAACCCACTTCGTTGATCCCCAGGTCATATCTAGGGATGGAAAAATGGGTAATATATATGGGTACCCATTCAAAGTACCCATCTTAAATAAGTTGGGTACCCAACTCATTTAAAATGGGAAAAAAGCGAGTCAAACTCATATAAACCATTTAAAAGTTCGTCGGAAAATGGGTAAAAGGGACTCATTTACAAAAGAAAGAAGAGCCACATTAATATTTTTTTAAGGTGTAGTGGTCGGGATAGGGATGGGTGGGATAAGGAAAAAATCAATATTTTTTTTGAAAAACAATTTTTTTGGGAGGGGGTGCGGTAGTGGTGGGAAGGGTGGTGTGAAGTAGAAAAAAATAAATTTATTATTTTTCAGAAAAACAAATTAAAAAAAAAAGTAACTTTTGAGGCGTTGGGCTATGGGGTGGGGGTGCGGAGGGTGAAGAGTGAGGTTAGAGATTTTGCTTTTAAAGCTTTTAACATGATCCCTATAATACTATGGGTAAATATGGATACCCATATTATCCATTGGGTAACTCGTTTTTACCCATTTAAAATATGAGTCGAGTCGAATATTTACCCATTTTTATTTAACTCATTTTCGATCGACTCATATTCAACTTACCTGCTTGTTTGCCGGTGCTAGTCATACCCTTTGGCACTGCTGTGTTTCTTCATTGAATGATTTTTTTGGTTTTTTCTTTTGGGAACAGGTGGTTCGCGAAAACCAGGTGGTGGTGGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAGGTTGGCTTAGACTTGTGTTTTCTTTTTCTAAATCATCTTTTAAATCTTAACTAGAATCTGTTGAATCTTTATACGGTCCTGGGTCTTATTTGTATGTGTGTCTGTAATTTCATGCAGTACCTTCATGAAGATGGCTATACAAGTAACGGGATTGTTGGTTGCACCCAAC</genome_strand>
        <mrna_strand>GTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACAGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACGTCAGATATGGCCATAATTTCACGTAAAGGTTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGTCAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTGGAGAAGAGTGCAGAGCAG.................................................................................................GTTGATGCGGATACTGCTACAGTGGGCGAGGATGGTGAGGTGGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTACCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTCGCGAAAACCAGGTGGTGGTTGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAG.....................................................................................................................TACCTTCATGAAGATGGCTATACAAGTAATGGGATTGTTGGTTGCA-CCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E569746" ref_strand="+" ref_description="SGN-E569746 [14225]">
      <seq>ggaattgggcaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacagagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaggacccaacgtcagatatggccataatttcacgtaaaggttcagctctagttcgggaaatacgtgaaaaacaaaacatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="105082" stop="104049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104777" g_stop="104600" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="197" r_length="178" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100">
            <donor d_prob="0.796" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="104499" g_stop="104349" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="348" r_length="151" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E569746" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E569746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104777" e_stop="104600"/>
          <exon e_start="104499" e_stop="104349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCA</genome_strand>
        <mrna_strand>GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACAGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACGTCAGATATGGCCATAATTTCACGTAAAGGTTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330771" ref_strand="+" ref_description="SGN-E330771 [cTOD-8-J8]">
      <seq>ctcgtgccgcttctacaggaggtgctctgtctgaggacggaggagatgatacaaatggtgcctctgaagatcagaatgaagagattactgaaagtatgcgtttagagatggagtataattcagatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgaaggggatggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggccaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaagacccaacttcagatatggccataatttcacgtaaaggctcagctctagttcgggaaatacgtgaaaaacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="106666" stop="104051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106471" g_stop="106455" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="35" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106454" i_stop="106341" i_length="114">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106340" g_stop="106243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="133" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106242" i_stop="106089" i_length="154">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106088" g_stop="105980" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="242" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105979" i_stop="104778" i_length="1202">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104777" g_stop="104600" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="420" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104499" g_stop="104351" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="569" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E330771" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106471" e_stop="106455"/>
          <exon e_start="106340" e_stop="106243"/>
          <exon e_start="106088" e_stop="105980"/>
          <exon e_start="104777" e_stop="104600"/>
          <exon e_start="104499" e_stop="104351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGCTCTGTCTGAGGTACTGCTTTATACCAAAGTTATCTTCCTTAGTTTATTTTTTGTTTGTGGGGTGGGGGCTTAATTGGAATATTAAAAGAAGGATTTTTTTCACCTGTGCGTTACTTCCTTCTAGGACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTGGTAATTGTCTTACCATTTTATAGTATCTACAGTATTATGAGTCTTATGACCCCTCTCTCAGAAGTCTATATGTGCTTACTATGTTTTCTTTTTCTCTTTCTAGTAATCAGTTTTGTTATTTTTGGTAGAGCCAATTATCACTTGCATTATGCAGGTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTGGTAAGCACAGAGACTACAAAAGCCTTAAATCATGATTTTGGCATATGTTTGCATTTGTGTGTTTGGGGGAGAACTAGCATACTCTCGGATGTTACTGGGACTCGGTGGAAGTTGTAGCAATATGAATGACTGGTGCTTTAAGCTGATTAGAAAACTTACTTGATGGTTAGTGGTTTAGCTTGCACTTGACAACTCGTGTCACTCTCTGCATAACAATCTGTTGTGTCATAGCTTGCTGTATTTCGAGGCATTATGGATTTATGTTTCTGCTTTGCGATCCCTCTATCATCAATACTGATGATGAGAATTAGATGAATTTATATAATTCTCTGGTGCGAAGGGAACTAGAGGGCACATATCCTTAATTGCCGTTTGATGCATGAGCATGTTTCACTATTGTGATTGTGTCAGACAATGTGCTTTTCCTACTGATTGAATTCCCTTTGTGTAGACCTGCTGTCTCTTTTAGAGATGTATTTTGTATTATCCTATTTTAGAGCATTGTTGAACATCTGAGAGGTCACTAAGACGTTTGAACAGAAAAGATGGAAGACCTTGCACAGATATTATCCTTTTGACCCTAAACTGAAATTGCAGTATTTTTCTTTCTTTTACATCCAGATGTATCTCGATTTTGCACCTCTGTGGTGCCATCATCTGCATAACATAGTTGCTTTCGATTAAAGAAAAATGAATTTTACATCTGAGAGGTATTTAAATTATAACATGTTGTTTTCCAATGCAAAACTTTGAAACTTGGTTTGAAATTCAGGAAATTATAGGGAATTGCGAGATCAAAATAGTAGTCATTTATAGCCGATGAGCTGGTTCTTCTTAGAATCTGAGCTAAAATGACTATTGGGGAGAGAACACAGAGATTTACTGGCTAAGTCAAGATATCATTTTAATTTAACATCAAGAGCTTCTTGGACCTTTCCTGATGAGACAGTCTGTTCTCAGTGGGTTAGCATAATATCAAGAACTTCTGTAGTCTATCAATTGTAACTATACTATGTAGGATTGGTGATGAGATAGTCTGTTCTCTGTGGGTTGGCATAATATCAAGAACGTTTGTAGTCTATCAAACGTAACTATACTGTGTAGTTAAGGATTGGTTAGATACAATGAACACTAATACAATGCATGTATGGTCTGCCATTGACGTTGTCTTTCTCTCTCTCCCTGCCCTCCACTTGTAACAGGTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</genome_strand>
        <mrna_strand>GAGGTGCTCTGTCTGAG..................................................................................................................GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG..........................................................................................................................................................GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAAGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247138" ref_strand="+" ref_description="SGN-E247138 [cLEF-46-I20]">
      <seq>ttgatcatttgagaacgttgacacattgatattggtgaatggtaattcaagaaatgggatctcgggggggaggtgaagcaaaggcaaatgctttagctacgcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaaccttgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacgggccagtgcagcaaggggcttctcagcatcatccatcgagcattacaatgtccagggatctcagcaagaagactgttgatgaggtgtggcaagatattcagcagggggtaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="113179" stop="114145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113479" g_stop="113845" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E247138" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113479" e_stop="113845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCAGTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAAT</genome_strand>
        <mrna_strand>TTGATCATTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559775" ref_strand="+" ref_description="SGN-E559775 [19326]">
      <seq>ctgaatggtaatacaagggatgggatctcaggggggagatgaagcaaaggcaaatgctttagctacgcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaacctcgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacggggcagtgcagcatggggcttctcagcatcgtccatcgagcattacaatgtccagggatctcagcaagaagactgtcgatgaggtgtggcaagatattcagcagggggtaaaaacagataatgttgataagagaagccaggagaggcaacttactttaggtgagataactctggaggatttcttggtcaaggctggagtgattgcagagtcgacccaaggcaagagaatttcgggtttagtatttggggttgattcaaatgtcattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="113214" stop="114298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113513" g_stop="113998" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E559775" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E559775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113513" e_stop="113998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTC-AATGTCATTGAC</genome_strand>
        <mrna_strand>CTGAATGGTAATACAAGGGATGGGATCTCAGGGGGGAGATGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTCGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGGCAGTGCAGCATGGGGCTTCTCAGCATCGTCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTCGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAACAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTTACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCAGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTATTTGGGGTTGATTCAAATGTCATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299937" ref_strand="+" ref_description="SGN-E299937 [cLEW-11-G9]">
      <seq>ctttagctattcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaaccttgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacgggccagtgcagcaaggggcttctcagcatcatccatcgagcattacaatgtccagggatctcagcaagaagactgttgatgaggtgtggcaagatattcagcagggggtaaaaatagataatgttgataagagaagccaggagaggcaactaactttaggtgagataactctggaggatttcttggtcaaggctggagtgattgccgagtcgacccaaggcaagagaatttcgggtttagtttttggggttgattcaatgtcattgacacagcaagctcagtggacgcactatcaaatccccgcaatgcaacaggtaccagaacagcagcatcaacaacaacagcagaatataccaccagtttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="113269" stop="114397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113569" g_stop="114097" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-E299937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113569" e_stop="114097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</genome_strand>
        <mrna_strand>CTTTAGCTATTCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542259" ref_strand="+" ref_description="SGN-E542259 [TUS-63-H16](-)">
      <seq>gaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttcatggggtgccaggatagcgtaatcaactacaatggctcaacgactgattttaatgtatggaaggatctataagttcccattgttatattctcatggttgcgccaataaggcaactgaagtttaatgcgtttgcatcaggctggtaattttttcttgcagatgagggttttgaagggtgtgattagtctagctagtgtagattaggaaacagtgtacataaggcatagctgctaatcattggcctttttttgttctttcccttttgggttttatgacaaaaagatgtgagctcagacatatatctactggatacagcttgcctgtccgacaggctttatatatgaaagcagtatttaagctcttgaaatttagcagaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="118830" stop="116127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118530" g_stop="118386" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="270" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116428" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="777" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="792"/>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E542259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118530" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</genome_strand>
        <mrna_strand>GAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433964" ref_strand="-" ref_description="SGN-E433964 [STM-59-C6]">
      <seq>aagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtcctttttcttgcagatgagggttttaaagggtgtgaattagtttagctagtgtagattaggaaacagtgtacataaggcatagccgctattcattggccttctttcgttctttcccttttgttttttatgaaagaaagatgtgagctcaaaacaattttgatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="118829" stop="116196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118529" g_stop="118386" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="269" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116494" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="710" r_length="441" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E433964" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433964" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="118529" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTG-ATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGG</genome_strand>
        <mrna_strand>AAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGT-CCTTTTTCTTGCAGATGAGGGTTTTAAAGGGTGTGAATTAGTTTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCCGCTATTCATTGGCCTTCTTTCGTTCTTTCCCTTTTGTTTTTTATGAAAGAAAGATGTGAGCTCAAAACAATTTTGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E620612" ref_strand="+" ref_description="SGN-E620612 [71315]">
      <seq>cagcagttagtgcttcagtgcatttgggtgagatcagatctggtggtctaagaggcaatcacagacaccacacatgcaatgagacatatgttatatggggagctaaaacagtattccgggtggaaaatgatgcggtaaaaaacaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgtagatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaattacaatggctcaacgattgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtccttttgcttgcagatgagggtatcaaagggtgtgaatgagtttagctagtgtagattaggaaacagtgtacataaggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="118068" stop="116278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117768" g_stop="117650" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116934" g_stop="116578" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="477" r_length="358" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E620612" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117768" e_stop="117650"/>
          <exon e_start="116934" e_stop="116578"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAA-AGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTG-ATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCAT</genome_strand>
        <mrna_strand>CAGCAGTTAGTGCTTCAGTGCATTTGGGTGAGATCAGATCTGGTGGTCTAAGAGGCAATCACAGACACCACACATGCAATGAGACATATGTTATATGGGGAGCTAAAACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAACAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTAGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAATTACAATGGCTCAACGATTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGT-CCTTTTGCTTGCAGATGAGGGTATCAAAGGGTGTGAATGAGTTTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E542262" ref_strand="+" ref_description="SGN-E542262 [TUS-63-H16]">
      <seq>acattttcctcttccggtaaccagaaccaccaccaacttccaatctccaccgccccatttcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttcatggggtgccaggatagcgtaatcaactacaatggctcaacgactgattttaatgtatggaaggatctataagttcccattgttatattctcatgggtgcgccnaatanngcactgaaagttaatgcgtttgcatcaggctggtaattttttcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119043" stop="116346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118743" g_stop="118386" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="483" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116646" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="772" r_length="289" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E542262" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118743" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCC-AATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGC</genome_strand>
        <mrna_strand>ACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGGTGCGCCNAATANNGC-ACTGAAAGTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E485553" ref_strand="+" ref_description="SGN-E485553 [cSTE-18-B21]">
      <seq>gaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgcggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtaatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaaagatctataggtttccattgttatattctcatggttgctccaataaggcaactgaagtttaatgcgtctgcatctagctggtcctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119050" stop="116353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118684" g_stop="118386" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="377" r_length="299" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="502" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116653" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="783" r_length="281" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E485553" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118684" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTT</genome_strand>
        <mrna_strand>TCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGCGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTA-ATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAAGATCTATAGGTTTCCATTGTTATATTCTCATGGTTGCTCCAATAAGGCAACTGAAGTTTAATGCGTCTGCATCTAGCTGGTCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E433963" ref_strand="+" ref_description="SGN-E433963 [STM-59-C6]">
      <seq>gaaaaagtgagagatggcaaatccaaggaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgtggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatcaactacaatggctcaacgactgattttaatgtatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119077" stop="116441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118780" g_stop="118386" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="404" r_length="404" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="529" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116741" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="723" r_length="194" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E433963" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E433963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118780" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATC---A---------GGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAA</genome_strand>
        <mrna_strand>GAAAAAGT--GAGA-GATGGCAAATCCAAGGAGGACATCATTTTCCCCTTCCGGTAACCAGAACCACCAGCAACTTCCAATTTCCACCTCCCCATTTCAGAATCAGAATCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGTGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561197" ref_strand="+" ref_description="SGN-E561197 [17151]">
      <seq>atttccctttcggtaaccagaacaccagcaacttccaatttccaccgncccatttcagaatcagaatncaagaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctccctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttctcagattcctcttcttctattgccaaagataagcgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaggttacgcggaagtaataattggtgcagatgaggttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggtgcgaagtacatacttcatggggtgccaggatagtgtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119039" stop="116479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118740" g_stop="118386" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.910"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="484" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116779" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="640" r_length="156" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E561197" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118740" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAG---G---GAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATC</genome_strand>
        <mrna_strand>ATTTCC-CTTTCGGTAACCAGAA-CACCAGCAACTTCCAATTTCCACCGNCCCATTTCAGAATCAGAATNCAAGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCCCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTCTCAGATTCCTCTTCTTCTATTGCCAAAGATAAGCGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAGGTTACGCGGAAGTAATAATTGGTGCAGATGAGGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGTGCGAAGTACATACTTCATGGGGTGCCAGGATAGTGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E269584" ref_strand="+" ref_description="SGN-E269584 [cLEM-2-O20]">
      <seq>ccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="118921" stop="116502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118621" g_stop="118386" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="361" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116802" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="494" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E269584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118621" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCA</genome_strand>
        <mrna_strand>CCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E404605" ref_strand="+" ref_description="SGN-E404605 [PPC-14-H23]">
      <seq>gaaaaagcgagagatcggcaaatccaaagaggacatcattttccccttccggtaaccagaaccaccagcaacttccaatttccacctccccatttcagaatcagaatcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctctcgctcttcctttttctcacatgggtttcactcagattccaacgtccttcaacttctacccctcaccgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaaccttgtcaggttcttagattcctcttcttctattgccaaagataaacgtggctggttgatcaatcctatttcccttgccctcgattctgccatttcaagtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccacacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtaaaaaaaagttacgtggaagtaatattggtgcagatgaggttgctgntgcagtcagcccccttggaactgcccatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119077" stop="116537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118780" g_stop="118386" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="530" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116837" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="627" r_length="97" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E404605" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118780" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAG------------GGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCT</genome_strand>
        <mrna_strand>GAAAAAGCGAGAGAT--CGGCAAATCCAAAGAGGACATCATTTTCCCCTTCCGGTAACCAGAACCACCAGCAACTTCCAATTTCCACCTCCCCATTTCAGAATCAGAATCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTCTCGCTCTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACGTCCTTCAACTTCTACCCCTCACCGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAACCTTGTCAGGTTCTTAGATTCCTCTTCTTCTATTGCCAAAGATAAACGTGGCTGGTTGATCAATCCTATTTCCCTTGCCCTCGATTCTGCCATTTCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCACACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAAAAAAAAGTTACGTGGAAGTAAT-ATTGGTGCAGATGAGGTTGCTGNTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300294" ref_strand="+" ref_description="SGN-E300294 [cLEW-17-A6]">
      <seq>cattttcctcttccggtaaccagaaccaccaccaacttccagatctccaccgccccatttcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119042" stop="116610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118742" g_stop="118386" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="483" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116910" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="508" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E300294" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118742" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCA-ATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAG</genome_strand>
        <mrna_strand>CATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAGATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699478" ref_strand="+" ref_description="SGN-E699478 [FA10BA12]">
      <seq>cgtttcacttcacaagcataacaaaataaaacaagataaaaataactttcaagaggctgttgaaggatctccagatgaatcaaatggattaaatgtgtctcagaacattaatccttctgaacgcagagcccctagctctcaaaaaagccttctgatgaattggcccttaatgtcttctattattgtctactgtgtattccagctccacgatatagcctatttggagatattttcactctgggctgttagtccaaggacccttgggggtttaagcttcacaacttctgatgttggacaagttcttgccatcacaggcattggtttgctactctttcagctgcttgtttatccactggtggaaaggattactgggcctgtcatgatttctcggatcggtgcagttttaagcatacctttattggctagctacccatatatagctttattaactggttttggcctctccatagctctcaactgtgcatctatgttaaagaatattctctcggtatcaattacaactggcttactaatcatgcagaatagagctgtgtcccaggagcaaagaggagctgcaaatggcatttcaatgtcctcaatgtcgcttttcaagacaattggccctgcagccgggggctcattattgtcctggtcacaacggcgtctagatgctgatattctgcctggtgatcagttggtgttctttgttctcaacgccatttgagtgctcggcctacttctgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="122574" stop="119565"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122278" g_stop="122054" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="226" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122053" i_stop="121929" i_length="125">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121928" g_stop="121841" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="314" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121840" i_stop="121711" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121710" g_stop="121625" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="400" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121624" i_stop="121525" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121524" g_stop="121417" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121416" i_stop="120928" i_length="489">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120927" g_stop="120883" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120882" i_stop="120789" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120788" g_stop="120700" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="642" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120699" i_stop="120073" i_length="627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120072" g_stop="120029" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="686" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120028" i_stop="119925" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119924" g_stop="119865" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="746" r_length="60" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-E699478" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122278" e_stop="122054"/>
          <exon e_start="121928" e_stop="121841"/>
          <exon e_start="121710" e_stop="121625"/>
          <exon e_start="121524" e_stop="121417"/>
          <exon e_start="120927" e_stop="120883"/>
          <exon e_start="120788" e_stop="120700"/>
          <exon e_start="120072" e_stop="120029"/>
          <exon e_start="119924" e_stop="119865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAGGTAGACATTGCTCAAATCTTTGCAGGACAATTTGCCTTGTGTTTTCTGAACCTTTTTAGGCAGACTATATTGGAAAATTGTGCATCTTTTAATCAAAAAAATACTATTAATGTTTTGCATCACTCTACAGGCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCAGTATGCCCCTGACTAAACTGACATATCACTTATATAACTACCACTTCCTATAAAGTTTCTTTTTCACTGTTAGATTATATTGAACTTACTTATCTTTCAGGTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCGGTAAGAACTTATCCTTAAATCATTGAGTTCTTCAGCTTCATGAAGTTATTGATGATAAAAATTCAATGTAGTGCTTTTGTGAATATCCAGGAATAGTTACTTATGTCCTTTTTTGTTTTGTTTTTCCCTTTTTGAATTCGAAATGTTTTTACTCCCACTGTTGGCGTGTATGCAGTATGATTCACAAAAATGATGGTGCATGATGAGGAGGAGAAAGAAATATATGACCTATAATATTTTGCTTCATTCATCTTTGCAGCTCTTTTCTCAAGTTTATGTTAGCTTTATGCTTTGTTACTCAATATCTAAGGTTCTTCGTTGAATGTAAATGAGTTGTATCTTAATTTTCTGGTTCATGATATCTCCTATTTCCTATACATGAAAATTATGAATAATATATCTGCTCAATTAACTTTGTTTGGCTTTTGCAGTTTCAGTATCTCGAAGTTGTTTGCTTGGTCTAAGTGGTTATTTTTCATATTTGATCAGGTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTGGTAACTACCTTATACCATAAGCACTTTTTTTCCTTATTATCCATATAACTGTGATCAGTAATGTTCATGTGTGAGTAAAATGTTTTAACTTCAGTCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATTGTAAGTTGTTAATTTCTCTTTATCATCTGCTGATCTTCAAGGTCATTCTGTGCTTGTCACTTGAATTTGAACCTTGTTTGGTATTTGAACATTGGGTTGAGGCATTTTCTCTTCCCGTTCTTACCCTGAAAAGGCAGGGACAGCTTATGTTCGTGAACCGATAAACCTCTTTCATCTAACCTAGCCTCCTCCATCCCTCGGGACTAACAAGGGGTAGTACAGGAGTACTCACCTTTCAGCCTGATCTTAGCTGTGGACGAACCCTTAGGTTTTGGGGAAATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCAACACCATTAAACAAACTTAGTACCATATACATGTCATGCAAATGAATGTAATGATATCTCTTATAAGTACTTCATGTTTGGCCAGTAACGATGCAGGGTCTGAGATTAACTTGGTATATTTGAAAATGCTAGAGTGGTGTAGTGATATAATCAGATGTTCATTTCAGTTTTAGTGAATGGGGGATTGTGTCTATTGGAAATGTATATGATTTTTGTCTAACTCGAAAGTTAAGGTCTACTGTCTATCAATCTAGACGAATAGATTGACAAGATTATGTATCATCACAATTTTATGATCTGCAATTTATGCAGATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTGGTAAGTTAATTACTCATTTCTGATGGCCTACTTTGATGCACTTGAAATACAAAAGTTAAGCCCAACAAACTAAACATAAAGGCATTGTGATGTTTGTAACACAGGTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCC</genome_strand>
        <mrna_strand>GTTTCACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATTAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG.............................................................................................................................ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG..................................................................................................................................GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA....................................................................................................GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG..............................................................................................TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG........................................................................................................GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTTGAGTGCTCGGCCTACTTCTGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>109</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="5776" PGL_stop="4504"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5776" e_stop="5225"/>
            <exon e_start="4560" e_stop="4504"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="0.926"/>
          <exon-only e_score="0.895"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="5776" e_stop="5225" e_length="552"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="5224" i_stop="4561" i_length="664"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="4560" e_stop="4504" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5776" stop="5225"/>
              <exon start="4560" stop="4504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595447" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGGATAAGGAAAAGGAAAAGATAACTTTTATGCAGTGATACTCTTGGTTGGATGGTGGTATATTCAATGTCTTTGTTGACGAGGGAGTGGGACTCTAGGAACATTTGTAATTCTAAGCTCATTACACTAATACCTTTCCATGACTTAGTTACTAGATAATACTATTTTTTTTCTTGATTGTTCTTTAACTTTTGTCGCAGGATGTTGATGCCGAAGCTTCCATTTTTCACAATGCCACATTGCGCGAGTAAGCTATAGCGCATAATCTTTCGGTCTCCACATTTTATGTAGATCATGCATAGTGTTTGATCATCGTAACAGTGTTTGATTTTTTGAAGATTCACCCTCTTTATATCCTCTTTTTAGCAGGCTTTACATGTTTGTGTGGATTAAAATTTAAGCACATAATATTATTTTCAAGCCCATCTTTACTGTCAAGTTGCAACCTTAGTGATTTCATTTTGCCTAGGGAAGATGTGAATTCACTGGAGCAAATCTTCGTGGAGCTGTATTAGCTGGTGCTAATCTTCAAAGTGCAAATTTACAAG : ATGCTTGTCTAATAGGCTGTAGCTTTTGTGGGGCGGATCTTCGTTCTGCTCACCTAC</gDNA_template>
            <first_frame> K  K  D  K  E  K  E  K  I  T  F  M  Q  *  Y  S  W  L  D  G  G  I  F  N  V  F  V  D  E  G  V  G  L  *  E  H  L  *  F  *  A  H  Y  T  N  T  F  P  *  L  S  Y  *  I  I  L  F  F  F  L  I  V  L  *  L  L  S  Q  D  V  D  A  E  A  S  I  F  H  N  A  T  L  R  E  *  A  I  A  H  N  L  S  V  S  T  F  Y  V  D  H  A  *  C  L  I  I  V  T  V  F  D  F  L  K  I  H  P  L  Y  I  L  F  L  A  G  F  T  C  L  C  G  L  K  F  K  H  I  I  L  F  S  S  P  S  L  L  S  S  C  N  L  S  D  F  I  L  P  R  E  D  V  N  S  L  E  Q  I  F  V  E  L  Y  *  L  V  L  I  F  K  V  Q  I  Y  K  :  M  L  V  *  *  A  V  A  F  V  G  R  I  F  V  L  L  T  Y </first_frame>
            <second_frame>  K  R  I  R  K  R  K  R  *  L  L  C  S  D  T  L  G  W  M  V  V  Y  S  M  S  L  L  T  R  E  W  D  S  R  N  I  C  N  S  K  L  I  T  L  I  P  F  H  D  L  V  T  R  *  Y  Y  F  F  S  *  L  F  F  N  F  C  R  R  M  L  M  P  K  L  P  F  F  T  M  P  H  C  A  S  K  L  *  R  I  I  F  R  S  P  H  F  M  *  I  M  H  S  V  *  S  S  *  Q  C  L  I  F  *  R  F  T  L  F  I  S  S  F  *  Q  A  L  H  V  C  V  D  *  N  L  S  T  *  Y  Y  F  Q  A  H  L  Y  C  Q  V  A  T  L  V  I  S  F  C  L  G  K  M  *  I  H  W  S  K  S  S  W  S  C  I  S  W  C  *  S  S  K  C  K  F  T  R :   C  L  S  N  R  L  *  L  L  W  G  G  S  S  F  C  S  P   </second_frame>
            <third_frame>   K  G  *  G  K  G  K  D  N  F  Y  A  V  I  L  L  V  G  W  W  Y  I  Q  C  L  C  *  R  G  S  G  T  L  G  T  F  V  I  L  S  S  L  H  *  Y  L  S  M  T  *  L  L  D  N  T  I  F  F  L  D  C  S  L  T  F  V  A  G  C  *  C  R  S  F  H  F  S  Q  C  H  I  A  R  V  S  Y  S  A  *  S  F  G  L  H  I  L  C  R  S  C  I  V  F  D  H  R  N  S  V  *  F  F  E  D  S  P  S  L  Y  P  L  F  S  R  L  Y  M  F  V  W  I  K  I  *  A  H  N  I  I  F  K  P  I  F  T  V  K  L  Q  P  *  *  F  H  F  A  *  G  R  C  E  F  T  G  A  N  L  R  G  A  V  L  A  G  A  N  L  Q  S  A  N  L  Q   : D  A  C  L  I  G  C  S  F  C  G  A  D  L  R  S  A  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5470" stop="5258"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLIIVTVFDFLKIHPLYILFLAGFTCLCGLKFKHIILFSSPSLLSSCNLSDFILPREDVNSLEQIFVELY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6840" PGL_stop="6243"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6840" e_stop="6243"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="6840" e_stop="6243" e_length="598"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E417008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6840" stop="6457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E440103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGCGGTCAACCTTAGCCGAGCGCTCAACTGGAGCTAATTGGCATGCTTCAGTCCTATTGAGGTTATTGATGAGAGATGAGTGTCTTAGTAGCCAATTTCACAAAAATGGCTGGACTGGGGTTTGACTAGGTTATACCAGCTAGATGAAAGGTTTGTAATCTTGTTTGGCTGCAGCATAGGAAGGAAGAAGTTATGGAAATGGTTAGCTATGGTACAGGACCCTTCATTTTGTCTTTAAGTATCCTCGTTGAATGGGCATCACAAGTGTAACACCTTGTTGGATTGATAGCTTTTGCAGATTCTCATACCTCAGTCAGTGATTTCTAGTCTTCTTTGCAAATTGTCTCCTTTTATTATGCTAAGGGGTGTTCTGGACATTATTTTTGAGTAAGTGGTAGTTTGTATAACAAATGTACACGATTGTATGCCTTATATTGGGTAAAAGAAGTTTTGGAGATAGTAAGCAATGTTACATAGAGACATAGACTCTTAATTTGCCTTGATATACCAATGATGACTCGGTATGACATAGTAATATCATATTGGACTGTGTGTGGTTAAATCTCATTCCTGATTCCATATAACATAATCATAAG</gDNA_template>
            <first_frame> A  A  V  N  L  S  R  A  L  N  W  S  *  L  A  C  F  S  P  I  E  V  I  D  E  R  *  V  S  *  *  P  I  S  Q  K  W  L  D  W  G  L  T  R  L  Y  Q  L  D  E  R  F  V  I  L  F  G  C  S  I  G  R  K  K  L  W  K  W  L  A  M  V  Q  D  P  S  F  C  L  *  V  S  S  L  N  G  H  H  K  C  N  T  L  L  D  *  *  L  L  Q  I  L  I  P  Q  S  V  I  S  S  L  L  C  K  L  S  P  F  I  M  L  R  G  V  L  D  I  I  F  E  *  V  V  V  C  I  T  N  V  H  D  C  M  P  Y  I  G  *  K  K  F  W  R  *  *  A  M  L  H  R  D  I  D  S  *  F  A  L  I  Y  Q  *  *  L  G  M  T  *  *  Y  H  I  G  L  C  V  V  K  S  H  S  *  F  H  I  T  *  S  *  </first_frame>
            <second_frame>  Q  R  S  T  L  A  E  R  S  T  G  A  N  W  H  A  S  V  L  L  R  L  L  M  R  D  E  C  L  S  S  Q  F  H  K  N  G  W  T  G  V  *  L  G  Y  T  S  *  M  K  G  L  *  S  C  L  A  A  A  *  E  G  R  S  Y  G  N  G  *  L  W  Y  R  T  L  H  F  V  F  K  Y  P  R  *  M  G  I  T  S  V  T  P  C  W  I  D  S  F  C  R  F  S  Y  L  S  Q  *  F  L  V  F  F  A  N  C  L  L  L  L  C  *  G  V  F  W  T  L  F  L  S  K  W  *  F  V  *  Q  M  Y  T  I  V  C  L  I  L  G  K  R  S  F  G  D  S  K  Q  C  Y  I  E  T  *  T  L  N  L  P  *  Y  T  N  D  D  S  V  *  H  S  N  I  I  L  D  C  V  W  L  N  L  I  P  D  S  I  *  H  N  H  K </second_frame>
            <third_frame>   S  G  Q  P  *  P  S  A  Q  L  E  L  I  G  M  L  Q  S  Y  *  G  Y  *  *  E  M  S  V  L  V  A  N  F  T  K  M  A  G  L  G  F  D  *  V  I  P  A  R  *  K  V  C  N  L  V  W  L  Q  H  R  K  E  E  V  M  E  M  V  S  Y  G  T  G  P  F  I  L  S  L  S  I  L  V  E  W  A  S  Q  V  *  H  L  V  G  L  I  A  F  A  D  S  H  T  S  V  S  D  F  *  S  S  L  Q  I  V  S  F  Y  Y  A  K  G  C  S  G  H  Y  F  *  V  S  G  S  L  Y  N  K  C  T  R  L  Y  A  L  Y  W  V  K  E  V  L  E  I  V  S  N  V  T  *  R  H  R  L  L  I  C  L  D  I  P  M  M  T  R  Y  D  I  V  I  S  Y  W  T  V  C  G  *  I  S  F  L  I  P  Y  N  I  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14561" PGL_stop="13334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14543" e_stop="13334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="14543" e_stop="13334" e_length="1210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14543" stop="14314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14409" stop="13717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14264" stop="13656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14153" stop="13424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14153" stop="13710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14119" stop="13349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13940" stop="13334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  M  L  F  L  F  L  Y  I  N  F  I  N  T  N  Y  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  *  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  T  K  R  T  *  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  F  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  *  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  C  C  F  C  F  C  T  L  T  S  *  I  Q  I  I  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  R  D  *  N  L  Y  G  F  L  L  Y  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S  *  S  P  C  *  R  I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  I  Q  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  R  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  V  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  T  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  V  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  Y  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13958" stop="13587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKPQKNSGML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13641" stop="13336"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQCVQQCKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVVAIIEKLPPLWKDFKNYLKYKRKEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14561" e_stop="14364"/>
            <exon e_start="13955" e_stop="13334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.695" acc_prob="0.996" e_score="0.879"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="14561" e_stop="14364" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.695" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14363" i_stop="13956" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="13955" e_stop="13334" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14561" stop="14364"/>
              <exon start="13955" stop="13461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13940" stop="13334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGA</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  :  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R :   K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S  *  S  P  C  *  R  I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  I  Q  T  Q  G  D  D  C  * </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *   : E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  V  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  Y  K  R  K  E  M  T  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14438" stop="14364"/>
                    <exon start="13955" stop="13587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFFSSLKLKKFEKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKPQKNSGML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23200" PGL_stop="29170"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23200" e_stop="23295"/>
            <exon e_start="23967" e_stop="24077"/>
            <exon e_start="27392" e_stop="27526"/>
            <exon e_start="29015" e_stop="29170"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.790" acc_prob="0.892" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.988" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23200" e_stop="23295" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.790" acc_prob="0.892">
            <gDNA_intron_boundary i_start="23296" i_stop="23966" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="23967" e_stop="24077" e_length="111"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24078" i_stop="27391" i_length="3314"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27392" e_stop="27526" e_length="135"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.993">
            <gDNA_intron_boundary i_start="27527" i_stop="29014" i_length="1488"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29015" e_stop="29170" e_length="156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23200" stop="23295"/>
              <exon start="23967" stop="24077"/>
              <exon start="27392" stop="27526"/>
              <exon start="29015" stop="29170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23218" stop="23295"/>
              <exon start="23967" stop="24077"/>
              <exon start="27392" stop="27526"/>
              <exon start="29015" stop="29150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23226" stop="23295"/>
              <exon start="23967" stop="24077"/>
              <exon start="27392" stop="27526"/>
              <exon start="29015" stop="29159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438410" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAGTGACAGTGAGTCCATTGAATCATCAATCCTCAAACTCTGAGAATGGCCTATGACTCCGAAAGTTCGTCTTCCACGGTTCGTCTGAATATCG : GAGGAAGGAAGTTTTGCACTACACTGGATACCCCTCACACAACGTGAGCCAGACTCGATGCTCGCTGCTATGTTTAGTGGTCGTCATACTATCTGCCAGGAGTCAGAGAAG : GGACACATATTCGTTGACAGGGACGGAAAGCACTTCCACCATATCCTTAATTGGTTGAGGGATGGTGTAATTCCACCCCTGAAAGATTCTGAATATGCTCAGCTTCTGCGGGAGGCGGAGTACTATCAACTCCTT : GGTCTAGTAGATGGAATTAAATCTGCCCTAAGTAAGAGGAAGGAGGATGAGGAGTTGGGTACTGAATTGACACGCATTGACATTATCAAATGCATACAGTCTGAGAGAGTCAGATTTCGGGGAATTAATCTTTCTGGTCTTGATCTTTCGAAGTTG</gDNA_template>
            <first_frame> E  S  D  S  E  S  I  E  S  S  I  L  K  L  *  E  W  P  M  T  P  K  V  R  L  P  R  F  V  *  I  S  :  E  E  G  S  F  A  L  H  W  I  P  L  T  Q  R  E  P  D  S  M  L  A  A  M  F  S  G  R  H  T  I  C  Q  E  S  E  K  :  G  H  I  F  V  D  R  D  G  K  H  F  H  H  I  L  N  W  L  R  D  G  V  I  P  P  L  K  D  S  E  Y  A  Q  L  L  R  E  A  E  Y  Y  Q  L  L  :  G  L  V  D  G  I  K  S  A  L  S  K  R  K  E  D  E  E  L  G  T  E  L  T  R  I  D  I  I  K  C  I  Q  S  E  R  V  R  F  R  G  I  N  L  S  G  L  D  L  S  K  L </first_frame>
            <second_frame>  R  V  T  V  S  P  L  N  H  Q  S  S  N  S  E  N  G  L  *  L  R  K  F  V  F  H  G  S  S  E  Y  R :   R  K  E  V  L  H  Y  T  G  Y  P  S  H  N  V  S  Q  T  R  C  S  L  L  C  L  V  V  V  I  L  S  A  R  S  Q  R  R :   D  T  Y  S  L  T  G  T  E  S  T  S  T  I  S  L  I  G  *  G  M  V  *  F  H  P  *  K  I  L  N  M  L  S  F  C  G  R  R  S  T  I  N  S  L :   V  *  *  M  E  L  N  L  P  *  V  R  G  R  R  M  R  S  W  V  L  N  *  H  A  L  T  L  S  N  A  Y  S  L  R  E  S  D  F  G  E  L  I  F  L  V  L  I  F  R  S   </second_frame>
            <third_frame>   E  *  Q  *  V  H  *  I  I  N  P  Q  T  L  R  M  A  Y  D  S  E  S  S  S  S  T  V  R  L  N  I   : G  G  R  K  F  C  T  T  L  D  T  P  H  T  T  *  A  R  L  D  A  R  C  Y  V  *  W  S  S  Y  Y  L  P  G  V  R  E   : G  T  H  I  R  *  Q  G  R  K  A  L  P  P  Y  P  *  L  V  E  G  W  C  N  S  T  P  E  R  F  *  I  C  S  A  S  A  G  G  G  V  L  S  T  P   : W  S  S  R  W  N  *  I  C  P  K  *  E  E  G  G  *  G  V  G  Y  *  I  D  T  H  *  H  Y  Q  M  H  T  V  *  E  S  Q  I  S  G  N  *  S  F  W  S  *  S  F  E  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23290" stop="23295"/>
                    <exon start="23967" stop="24077"/>
                    <exon start="27392" stop="27526"/>
                    <exon start="29015" stop="29170"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISEEGSFALHWIPLTQREPDSMLAAMFSGRHTICQESEKGHIFVDRDGKHFHHILNWLRDGVIPPLKDSEYAQLLREAEYYQLLGLVDGIKSALSKRKEDEELGTELTRIDIIKCIQSERVRFRGINLSGLDLSKL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="30797" PGL_stop="31744"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30797" e_stop="30918"/>
            <exon e_start="31219" e_stop="31744"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30797" e_stop="30918" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30919" i_stop="31218" i_length="300"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="31219" e_stop="31744" e_length="526"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30797" stop="30918"/>
              <exon start="31219" stop="31744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31281" stop="31612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCATTACCATCCTGTTGCAAGACAAAGAAGTTGAAGGGCTTCAGGTTCTCAAAGATGATCAATGGTTCAGAGTGCCTGTTGTCCCATATGGTTTACTCATCAATGTTGGAGATCAAGTTGAG : GTAATGAGCAATGGCATCTTTAAAAGCCCGGTGCACAGGGTGGTGACGAATGCAGAACGAGAAAGAAATAGCCTTGCTGTCTTCATTATGCCAGATGTACATGTTGGGATTGGACCAGTAGAGAAGCTTATCAACGAGGAAAGGCCGAGAGGGTACAAGGACATTAAGAATTATGTTGCTCTCTTCTTCCAAAGCTATCAGCAGGGGAAAATACCAATAGAAGCAGCAAAGATAAGCCAAGAATTTCATTAGCTGATGTTGGTTCCTTCTTTTCCTCTATTTGTATGTTCACTAGTCGTGGTTGCCTGTGCTGCGCACGAGCCCAACACTAAGATCTGGACATGCTCTAAGAAGGGCAAGCTCTTGAATATAAGCAAGACAACGGATTGATCTACAACCTATTGTTATTCATTTACGAAATATACTAAATGCATAATATGTACCAAAAATAGGAGTAAGGTGCGCGTACACCTAACCTTCCTAAACCTTACTTGTGAGACTAAACTGATTATATTATTGCTGTGCC</gDNA_template>
            <first_frame> P  L  P  S  C  C  K  T  K  K  L  K  G  F  R  F  S  K  M  I  N  G  S  E  C  L  L  S  H  M  V  Y  S  S  M  L  E  I  K  L  R :   *  *  A  M  A  S  L  K  A  R  C  T  G  W  *  R  M  Q  N  E  K  E  I  A  L  L  S  S  L  C  Q  M  Y  M  L  G  L  D  Q  *  R  S  L  S  T  R  K  G  R  E  G  T  R  T  L  R  I  M  L  L  S  S  S  K  A  I  S  R  G  K  Y  Q  *  K  Q  Q  R  *  A  K  N  F  I  S  *  C  W  F  L  L  F  L  Y  L  Y  V  H  *  S  W  L  P  V  L  R  T  S  P  T  L  R  S  G  H  A  L  R  R  A  S  S  *  I  *  A  R  Q  R  I  D  L  Q  P  I  V  I  H  L  R  N  I  L  N  A  *  Y  V  P  K  I  G  V  R  C  A  Y  T  *  P  S  *  T  L  L  V  R  L  N  *  L  Y  Y  C  C  A </first_frame>
            <second_frame>  H  Y  H  P  V  A  R  Q  R  S  *  R  A  S  G  S  Q  R  *  S  M  V  Q  S  A  C  C  P  I  W  F  T  H  Q  C  W  R  S  S  *   : G  N  E  Q  W  H  L  *  K  P  G  A  Q  G  G  D  E  C  R  T  R  K  K  *  P  C  C  L  H  Y  A  R  C  T  C  W  D  W  T  S  R  E  A  Y  Q  R  G  K  A  E  R  V  Q  G  H  *  E  L  C  C  S  L  L  P  K  L  S  A  G  E  N  T  N  R  S  S  K  D  K  P  R  I  S  L  A  D  V  G  S  F  F  S  S  I  C  M  F  T  S  R  G  C  L  C  C  A  R  A  Q  H  *  D  L  D  M  L  *  E  G  Q  A  L  E  Y  K  Q  D  N  G  L  I  Y  N  L  L  L  F  I  Y  E  I  Y  *  M  H  N  M  Y  Q  K  *  E  *  G  A  R  T  P  N  L  P  K  P  Y  L  *  D  *  T  D  Y  I  I  A  V   </second_frame>
            <third_frame>   I  T  I  L  L  Q  D  K  E  V  E  G  L  Q  V  L  K  D  D  Q  W  F  R  V  P  V  V  P  Y  G  L  L  I  N  V  G  D  Q  V  E  :  V  M  S  N  G  I  F  K  S  P  V  H  R  V  V  T  N  A  E  R  E  R  N  S  L  A  V  F  I  M  P  D  V  H  V  G  I  G  P  V  E  K  L  I  N  E  E  R  P  R  G  Y  K  D  I  K  N  Y  V  A  L  F  F  Q  S  Y  Q  Q  G  K  I  P  I  E  A  A  K  I  S  Q  E  F  H  *  L  M  L  V  P  S  F  P  L  F  V  C  S  L  V  V  V  A  C  A  A  H  E  P  N  T  K  I  W  T  C  S  K  K  G  K  L  L  N  I  S  K  T  T  D  *  S  T  T  Y  C  Y  S  F  T  K  Y  T  K  C  I  I  C  T  K  N  R  S  K  V  R  V  H  L  T  F  L  N  L  T  C  E  T  K  L  I  I  L  L  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30799" stop="30918"/>
                    <exon start="31219" stop="31470"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ITILLQDKEVEGLQVLKDDQWFRVPVVPYGLLINVGDQVEVMSNGIFKSPVHRVVTNAERERNSLAVFIMPDVHVGIGPVEKLINEERPRGYKDIKNYVALFFQSYQQGKIPIEAAKISQEFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="35239" PGL_stop="36554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35239" e_stop="35509"/>
            <exon e_start="36307" e_stop="36554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="35239" e_stop="35509" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35510" i_stop="36306" i_length="797"/>
          </intron>
          <exon e_serial="2" e_score="0.968">
            <gDNA_exon_boundary e_start="36307" e_stop="36554" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35239" stop="35509"/>
              <exon start="36307" stop="36554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205976" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAG : GCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTAGGGTTGAGTGTTAGCAAG</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  *  I  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  L  C  L  I  I  T  S  L  P  Y  L  I  R  T  E   : G  K  R  N  S  I  R  R  R  R  R  *  *  R  I  R  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  G  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  W  L  F  V  G  L  S  V  S  K </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  Y  T  Q  Q  K  K  P  R  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  P  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  E  I  F  A  *  *  *  L  P  Y  L  I  *  *  G  L  K  :  A  K  G  T  L  *  E  E  E  D  V  D  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  C  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  G  S  L  *  G  *  V  L  A   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  V  N  I  R  S  K  R  S  Q  D  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  L  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  K  S  L  L  N  N  N  F  L  T  L  S  D  K  D  *  R :   Q  K  E  L  Y  K  K  K  K  T  L  M  K  N  T  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  R  I  A  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  I  V  Q  R  V  G  L  A  L  C  R  V  E  C  *  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35508" stop="35509"/>
                    <exon start="36307" stop="36550"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTLMKNTTTSRREQGRIIHQIEVFKVDRIATFKTFLSKKVLSCRTICLVFVLNCSLQFIVQRVGLALCRVEC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="46027" PGL_stop="54500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46027" e_stop="46273"/>
            <exon e_start="47261" e_stop="47322"/>
            <exon e_start="47873" e_stop="47960"/>
            <exon e_start="48064" e_stop="48125"/>
            <exon e_start="48219" e_stop="48315"/>
            <exon e_start="48457" e_stop="48867"/>
            <exon e_start="49661" e_stop="50509"/>
            <exon e_start="50659" e_stop="50784"/>
            <exon e_start="50861" e_stop="50974"/>
            <exon e_start="51081" e_stop="51167"/>
            <exon e_start="51743" e_stop="51878"/>
            <exon e_start="51957" e_stop="51999"/>
            <exon e_start="54195" e_stop="54500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="0.977"/>
          <exon-intron don_prob="0.978" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.745" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.956" e_score="0.959"/>
          <exon-intron don_prob="0.755" acc_prob="0.708" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="46027" e_stop="46273" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47261" e_stop="47322" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.835">
            <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47873" e_stop="47960" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48064" e_stop="48125" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.745" acc_prob="0.939">
            <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.976">
            <gDNA_exon_boundary e_start="48219" e_stop="48315" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48316" i_stop="48456" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.959">
            <gDNA_exon_boundary e_start="48457" e_stop="48867" e_length="411"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.956">
            <gDNA_intron_boundary i_start="48868" i_stop="49660" i_length="793"/>
          </intron>
          <exon e_serial="7" e_score="0.995">
            <gDNA_exon_boundary e_start="49661" e_stop="50509" e_length="849"/>
          </exon>
          <intron i_serial="7" don_prob="0.755" acc_prob="0.708">
            <gDNA_intron_boundary i_start="50510" i_stop="50658" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="50659" e_stop="50784" e_length="126"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="50861" e_stop="50974" e_length="114"/>
          </exon>
          <intron i_serial="9" don_prob="0.914" acc_prob="0.964">
            <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="51081" e_stop="51167" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="51743" e_stop="51878" e_length="136"/>
          </exon>
          <intron i_serial="11" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="51879" i_stop="51956" i_length="78"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="51957" e_stop="51999" e_length="43"/>
          </exon>
          <intron i_serial="12" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52000" i_stop="54194" i_length="2195"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="54195" e_stop="54500" e_length="306"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46027" stop="46273"/>
              <exon start="47261" stop="47322"/>
              <exon start="47873" stop="47960"/>
              <exon start="48064" stop="48125"/>
              <exon start="48219" stop="48315"/>
              <exon start="48457" stop="48579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46027" stop="46273"/>
              <exon start="47261" stop="47322"/>
              <exon start="47873" stop="47960"/>
              <exon start="48064" stop="48125"/>
              <exon start="48219" stop="48280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483053" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46053" stop="46273"/>
              <exon start="47261" stop="47322"/>
              <exon start="47873" stop="47960"/>
              <exon start="48064" stop="48125"/>
              <exon start="48219" stop="48276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46113" stop="46273"/>
              <exon start="47261" stop="47322"/>
              <exon start="47873" stop="47960"/>
              <exon start="48064" stop="48125"/>
              <exon start="48219" stop="48300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363341" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48297" stop="48315"/>
              <exon start="48457" stop="48867"/>
              <exon start="49661" stop="49923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455034" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48764" stop="48867"/>
              <exon start="49661" stop="49781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49678" stop="50254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49921" stop="50477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50097" stop="50509"/>
              <exon start="50659" stop="50784"/>
              <exon start="50861" stop="50974"/>
              <exon start="51081" stop="51167"/>
              <exon start="51743" stop="51809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50682" stop="50784"/>
              <exon start="50861" stop="50974"/>
              <exon start="51081" stop="51167"/>
              <exon start="51743" stop="51878"/>
              <exon start="51957" stop="51999"/>
              <exon start="54195" stop="54393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50740" stop="50784"/>
              <exon start="50861" stop="50974"/>
              <exon start="51081" stop="51167"/>
              <exon start="51743" stop="51878"/>
              <exon start="51957" stop="51999"/>
              <exon start="54195" stop="54500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG : GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA : TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG : CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG : CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAG : AATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGAAGGAAAGGTGTCGAGTTTCTTGAGTCCTAGTCGTTTAAGTGATAATATGTATGATGATAGGTTTGGTAATGAAGGATCTAATCCCAGAGCTTCAGATTACTCTGTGTCTAGTGGTGGTGATCCATTCAGGTCAGTCGCACAGAGCCCCAACTTCCAGAGAGGCATCGGAAGTCCCTTGTGTGACACCTCAAGGGATATTTCATACGAAGATGTACGGCATGTCAAGAAAGATGCTGGAAGAATATTACGAGCACAG : AGAACTGCATCTTCTGGAAGTTTTGAATCATTCGACAGCAATTCCTTGTCATTCAAGTCTGTAAATTCTGTTTGTTTAGCGGATGCTGTTTCAGAATCAAATCAAACAATAGAGACTCACTCTAGTAAATTGTCAACTTTCCCCTCTTTGCAACGATCATCGGGACCCGGAAATCCAGATGGCCCTGATCTATTCAATGCTCCCTCAGTTCCTCAAAACGCTCCACCTTCAGTTTCAACAAAATCTCGTCTGCCAGTGTCATCATTTCAGCCATCCATTTCTGCTGGTCCAATTGGTAATTCACATCAACCATCGCTCACTCTCCCACCTTCATCTTTGGACTTTTTCTCAGAGGTGCCAAACCTGCCTTCAGCTGTAAGTGCTGATGAAAAACCATCATGTGAAGTCACTTCCAAAAATGAAGGATGGGCAACATTTGATATGCAGCGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC : TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG : AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG : ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG : CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG : GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC : GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAA</gDNA_template>
            <first_frame> R  E  R  A  A  S  C  L  S  L  H  S  S  L  D  K  I  Q  N  P  L  L  K  T  L  V  F  F  N  Q  F  P  P  K  L  F  G  E  I  Q  F  F  N  W  G  K  *  T  Y  K  H  E  *  Q  E  R  R  R  E  E  R  E  D  N  K  R  A  S  Q  A  P  S  Q  S  Q  M  H  Q  L  Q  *  L   : G  S  P  V  C  V  H  K  L  L  D  L  C  L  H  D  M  Q  R  N  T  :  S  *  V  Y  S  P  C  E  V  S  F  H  V  *  V  Y  F  P  R  S  G  S  S  S  T  G  W  *  S   : A  G  Q  R  D  I  F  K  K  L  G  P  S  K  S  V  A  S  *  *  Q  :  Q  C  *  *  S  E  G  I  Y  K  D  R  L  C  *  *  K  I  C  W  G  A  V  L  *  *  T  S  *  R  Y  P   : E  F  E  K  P  R  R  *  Y  E  E  S  K  F  L  S  F  L  F  S  K  S  T  I  *  L  S  V  *  R  T  T  L  W  E  K  C  T  S  T  H  *  K  A  R  I  R  P  G  T  L  *  R  K  G  V  E  F  L  E  S  *  S  F  K  *  *  Y  V  *  *  *  V  W  *  *  R  I  *  S  Q  S  F  R  L  L  C  V  *  W  W  *  S  I  Q  V  S  R  T  E  P  Q  L  P  E  R  H  R  K  S  L  V  *  H  L  K  G  Y  F  I  R  R  C  T  A  C  Q  E  R  C  W  K  N  I  T  S  T   : E  N  C  I  F  W  K  F  *  I  I  R  Q  Q  F  L  V  I  Q  V  C  K  F  C  L  F  S  G  C  C  F  R  I  K  S  N  N  R  D  S  L  *  *  I  V  N  F  P  L  F  A  T  I  I  G  T  R  K  S  R  W  P  *  S  I  Q  C  S  L  S  S  S  K  R  S  T  F  S  F  N  K  I  S  S  A  S  V  I  I  S  A  I  H  F  C  W  S  N  W  *  F  T  S  T  I  A  H  S  P  T  F  I  F  G  L  F  L  R  G  A  K  P  A  F  S  C  K  C  *  *  K  T  I  M  *  S  H  F  Q  K  *  R  M  G  N  I  *  Y  A  A  A  C  S  N  N  R  H  R  T  V  H  P  G  T  N  T  C  L  W  P  *  F  F  *  H  F  T  *  K  D  T  A  T  I  G  H  *  E  V  I  G  C  G  *  W  M  G  N  I  *  C  A  S  A  R  D  T  H  W  K  *  *  L  Y  L  Q  H  D  S  I  K  G  *  C  S  I  E  F  G  P  N  F  L  R  H  A  M  A  I  T  Y  G  I  C  P  S  W  A  S  R  *  R  L  H  C  L  C  I  R  F  I  N  A  C  S  I  S  W  R  C  A  E  C  *  S  N  S  K  C  K  K  Y  *   : L  V  E  C  L  *  C  F  *  *  P  L  S  S  Q  E  F  A  *  *  *  G  T  S  C  N  E  P  *  S  S  *  *  S  V  H  G  L  K  R  S  R   : E  C  S  D  R  S  K  S  K  S  C  A  G  *  W  I  S  Y  Y  Q  F  S  I  I  C  Q  C  L  V  I  W  I  V  H  S  S  C  S   : D  R  S  A  F  T  C  K  *  A  E  V  Q  Q  P  I  *  S  P  L  R  C  *  H  G  M  Q  Q  Y   : A  A  V  L  G  H  E  L  I  T  G  C  I  A  K  *  W  D  V  I  F  F  C  W  W  C  D  R  I  L  V  S  S  E  P  S  N  S  L  W  S  C  W  T  A  W :   D  I  I  C  F  L  T  T  S  W  Q  S  N  I  :  E  C  A  D  T  R  S  S  C  C  Y  W  R  K  S  I  C  I  G  L  C  I  Q  L  V  V  G  S  A  R  S  S  F  Q  L  L  D  S  Y  V  F  H  V  C  I  V  K  K  R  E  *  E  T  T  R  Q  K  L  P  N  F  K  G  L  P  F  L  V  E  A  Y  S  V  F  *  Y  Y  G  *  C  D  Y  G  *  N  V  L  R  M  S  F  L  A  T  L  A  Y  *  F  S  C  Q </first_frame>
            <second_frame>  E  R  E  L  L  H  A  S  L  F  I  P  P  W  T  K  F  K  I  H  Y  L  K  P  *  F  F  S  I  N  F  P  Q  S  C  L  G  K  F  N  F  S  I  G  G  N  K  P  T  S  M  S  S  R  R  E  E  E  R  N  E  K  I  I  R  G  L  L  K  L  P  P  N  R  K  C  I  N  C  N  S  L  :  G  P  Q  Y  V  C  T  N  F  W  T  F  V  C  M  T  C  S  G  I  H :   R  E  F  T  H  R  V  K  S  V  S  M  S  K  F  T  S  Q  E  V  E  A  L  Q  Q  G  G  N  Q  :  R  A  R  E  I  Y  L  K  S  W  D  P  Q  S  Q  W  L  P  N  N  S :   N  V  D  K  V  R  E  F  I  K  T  V  Y  V  D  K  K  Y  A  G  A  Q  S  S  D  R  P  P  R  D  I  Q  :  N  L  R  N  H  D  D  D  M  R  R  A  S  S  Y  H  S  Y  S  Q  S  P  P  Y  D  F  Q  Y  E  E  R  R  Y  G  K  N  A  P  A  L  T  R  K  P  G  S  D  R  G  L  Y  E  G  K  V  S  S  F  L  S  P  S  R  L  S  D  N  M  Y  D  D  R  F  G  N  E  G  S  N  P  R  A  S  D  Y  S  V  S  S  G  G  D  P  F  R  S  V  A  Q  S  P  N  F  Q  R  G  I  G  S  P  L  C  D  T  S  R  D  I  S  Y  E  D  V  R  H  V  K  K  D  A  G  R  I  L  R  A  Q  :  R  T  A  S  S  G  S  F  E  S  F  D  S  N  S  L  S  F  K  S  V  N  S  V  C  L  A  D  A  V  S  E  S  N  Q  T  I  E  T  H  S  S  K  L  S  T  F  P  S  L  Q  R  S  S  G  P  G  N  P  D  G  P  D  L  F  N  A  P  S  V  P  Q  N  A  P  P  S  V  S  T  K  S  R  L  P  V  S  S  F  Q  P  S  I  S  A  G  P  I  G  N  S  H  Q  P  S  L  T  L  P  P  S  S  L  D  F  F  S  E  V  P  N  L  P  S  A  V  S  A  D  E  K  P  S  C  E  V  T  S  K  N  E  G  W  A  T  F  D  M  Q  R  H  A  A  T  T  G  I  E  Q  F  T  L  A  P  T  P  A  Y  G  H  N  S  F  D  I  L  P  E  K  T  Q  Q  Q  L  V  T  E  K  S  L  D  V  D  D  G  W  A  T  F  D  V  P  Q  H  V  T  L  T  G  S  N  N  F  T  S  N  T  I  Q  L  K  G  D  A  Q  S  N  S  D  P  T  F  S  V  M  Q  W  P  S  P  M  E  S  A  P  H  G  P  A  V  R  D  S  T  A  C  A  L  D  L  S  M  P  A  P  F  H  G  G  V  L  N  V  E  V  T  P  S  A  R  S  T  D  :  L  W  S  A  F  D  V  S  N  D  H  L  A  L  K  S  L  P  N  S  K  E  Q  V  V  M  N  H  D  L  V  D  D  Q  Y  M  G  L  R  G  V  E  :  N  A  V  T  G  Q  S  Q  R  A  V  L  D  S  G  Y  P  I  T  S  F  P  S  Y  V  S  A  S  S  S  G  L  S  T  L  P  V  A  :  T  G  V  H  S  H  A  N  E  Q  K  S  N  N  P  F  D  L  P  Y  D  A  D  M  E  C  S  N  M  :  P  Q  Y  W  D  M  S  S  L  Q  A  A  L  P  S  D  G  M  S  S  S  F  V  G  G  V  T  E  S  W  F  P  Q  N  P  A  T  A  Y  G  P  A  G  Q  H   : G  T  L  F  V  S  S  Q  P  A  G  N  Q  I  S :   N  V  P  T  H  G  Q  V  A  A  I  G  G  N  P  F  A  *  D  C  V  F  N  *  L  L  D  Q  L  D  H  H  F  N  F  *  I  P  M  Y  F  M  F  V  L  L  K  K  E  N  E  R  Q  L  G  R  N  Y  Q  I  S  K  A  C  L  F  L  L  R  P  T  V  C  S  D  T  M  V  D  V  I  M  A  E  M  F  *  G  C  P  S  W  L  L  W  R  I  D  F  L  V   </second_frame>
            <third_frame>   R  E  S  C  F  M  P  L  S  S  F  L  L  G  Q  N  S  K  S  I  T  *  N  P  S  F  F  Q  S  I  S  P  K  V  V  W  G  N  S  I  F  Q  L  G  E  I  N  L  Q  A  *  V  A  G  E  K  K  R  G  T  R  R  *  *  E  G  F  S  S  S  L  P  I  A  N  A  S  T  A  I  A  W :   V  P  S  M  C  A  Q  T  F  G  P  L  S  A  *  H  A  A  E  Y   : I  V  S  L  L  T  V  *  S  Q  F  P  C  L  S  L  L  P  K  K  W  K  L  F  N  R  V  V  I  S :   G  P  E  R  Y  I  *  K  V  G  T  L  K  V  S  G  F  L  I  T   : A  M  L  I  K  *  G  N  L  *  R  P  S  M  L  I  K  N  M  L  G  R  S  P  L  I  D  L  L  E  I  S  R :   I  *  E  T  T  T  M  I  *  G  E  Q  V  L  I  I  P  I  L  K  V  H  H  M  T  F  S  M  K  N  D  V  M  G  K  M  H  Q  H  S  L  E  S  Q  D  Q  T  G  D  F  M  K  E  R  C  R  V  S  *  V  L  V  V  *  V  I  I  C  M  M  I  G  L  V  M  K  D  L  I  P  E  L  Q  I  T  L  C  L  V  V  V  I  H  S  G  Q  S  H  R  A  P  T  S  R  E  A  S  E  V  P  C  V  T  P  Q  G  I  F  H  T  K  M  Y  G  M  S  R  K  M  L  E  E  Y  Y  E  H  R :   E  L  H  L  L  E  V  L  N  H  S  T  A  I  P  C  H  S  S  L  *  I  L  F  V  *  R  M  L  F  Q  N  Q  I  K  Q  *  R  L  T  L  V  N  C  Q  L  S  P  L  C  N  D  H  R  D  P  E  I  Q  M  A  L  I  Y  S  M  L  P  Q  F  L  K  T  L  H  L  Q  F  Q  Q  N  L  V  C  Q  C  H  H  F  S  H  P  F  L  L  V  Q  L  V  I  H  I  N  H  R  S  L  S  H  L  H  L  W  T  F  S  Q  R  C  Q  T  C  L  Q  L  *  V  L  M  K  N  H  H  V  K  S  L  P  K  M  K  D  G  Q  H  L  I  C  S  G  M  Q  Q  Q  Q  A  S  N  S  S  P  W  H  Q  H  L  L  M  A  I  I  L  L  T  F  Y  L  K  R  H  S  N  N  W  S  L  R  S  H  W  M  W  M  M  D  G  Q  H  L  M  C  L  S  T  *  H  S  L  E  V  I  T  L  P  P  T  R  F  N  *  R  V  M  L  N  R  I  R  T  Q  L  S  P  S  C  N  G  H  H  L  W  N  L  P  L  M  G  Q  P  L  E  T  P  L  L  V  H  *  I  Y  Q  C  L  L  H  F  M  E  V  C  *  M  L  K  *  L  Q  V  Q  E  V  L  T :   C  G  V  P  L  M  F  L  M  T  T  *  L  S  R  V  C  L  I  V  R  N  K  L  *  *  T  M  I  *  L  M  I  S  T  W  A  *  E  E  *  R :   M  Q  *  Q  V  K  V  K  E  L  C  W  I  V  D  I  L  L  P  V  F  H  H  M  S  V  P  R  H  L  D  C  P  L  F  L  *  R :   Q  E  C  I  H  M  Q  M  S  R  S  P  T  T  H  L  I  S  L  T  M  L  T  W  N  A  A  I  C :   R  S  T  G  T  *  A  H  Y  R  L  H  C  Q  V  M  G  C  H  L  L  L  L  V  V  *  P  N  L  G  F  L  R  T  Q  Q  Q  L  M  V  L  L  D  S  M  :  G  H  Y  L  F  P  H  N  Q  L  A  I  K  Y   : R  M  C  R  H  T  V  K  L  L  L  L  A  E  I  H  L  H  R  I  V  Y  S  T  S  C  W  I  S  *  I  I  I  S  T  F  R  F  L  C  I  S  C  L  Y  C  *  K  K  R  M  R  D  N  *  A  E  I  T  K  F  Q  R  L  A  F  S  C  *  G  L  Q  C  V  L  I  L  W  L  M  *  L  W  L  K  C  F  E  D  V  L  L  G  Y  F  G  V  L  I  F  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46103" stop="46273"/>
                    <exon start="47261" stop="47322"/>
                    <exon start="47873" stop="47960"/>
                    <exon start="48064" stop="48125"/>
                    <exon start="48219" stop="48315"/>
                    <exon start="48457" stop="48867"/>
                    <exon start="49661" stop="50509"/>
                    <exon start="50659" stop="50784"/>
                    <exon start="50861" stop="50974"/>
                    <exon start="51081" stop="51167"/>
                    <exon start="51743" stop="51878"/>
                    <exon start="51957" stop="51999"/>
                    <exon start="54195" stop="54249"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2298</number_coding_nucleotides>
                  <number_encoded_amino_acids>766</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSINFPQSCLGKFNFSIGGNKPTSMSSRREEERNEKIIRGLLKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQQGGNQRAREIYLKSWDPQSQWLPNNSNVDKVREFIKTVYVDKKYAGAQSSDRPPRDIQNLRNHDDDMRRASSYHSYSQSPPYDFQYEERRYGKNAPALTRKPGSDRGLYEGKVSSFLSPSRLSDNMYDDRFGNEGSNPRASDYSVSSGGDPFRSVAQSPNFQRGIGSPLCDTSRDISYEDVRHVKKDAGRILRAQRTASSGSFESFDSNSLSFKSVNSVCLADAVSESNQTIETHSSKLSTFPSLQRSSGPGNPDGPDLFNAPSVPQNAPPSVSTKSRLPVSSFQPSISAGPIGNSHQPSLTLPPSSLDFFSEVPNLPSAVSADEKPSCEVTSKNEGWATFDMQRHAATTGIEQFTLAPTPAYGHNSFDILPEKTQQQLVTEKSLDVDDGWATFDVPQHVTLTGSNNFTSNTIQLKGDAQSNSDPTFSVMQWPSPMESAPHGPAVRDSTACALDLSMPAPFHGGVLNVEVTPSARSTDLWSAFDVSNDHLALKSLPNSKEQVVMNHDLVDDQYMGLRGVENAVTGQSQRAVLDSGYPITSFPSYVSASSSGLSTLPVATGVHSHANEQKSNNPFDLPYDADMECSNMPQYWDMSSLQAALPSDGMSSSFVGGVTESWFPQNPATAYGPAGQHGTLFVSSQPAGNQISNVPTHGQVAAIGGNPFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55766" PGL_stop="56670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55766" e_stop="55797"/>
            <exon e_start="55882" e_stop="56670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55766" e_stop="55797" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55798" i_stop="55881" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55882" e_stop="56670" e_length="789"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55766" stop="55797"/>
              <exon start="55882" stop="56670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738012" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTATTCAAATTGATCTATATTTCAACCCTG : GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCTAGGAGGGCTAATTTTGAT</gDNA_template>
            <first_frame> D  Y  S  N  *  S  I  F  Q  P  W :   N  F  T  I  V  F  E  L  I  C  K  G  G  I  F  I  L  C  L  D  L  E  G  N  *  F  *  F  I  F  L  T  R  T  R  W  V  Q  *  R  K  I  R  Y  S  D  P  I  S  E  E  V  A  S  F  *  V  L  G  C  E  G  L  K  L  K  *  G  K  L  *  S  L  L  L  K  C  V  I  G  Q  L  G  I  I  H  S  L  W  V  C  C  V  S  W  Y  F  C  T  D  H  F  L  L  C  F  Q  S  W  C  L  S  P  L  F  L  F  A  L  L  H  C  L  E  L  Y  *  V  M  V  S  L  I  Y  L  Y  L  N  G  K  K  T  Q  L  I  I  L  C  L  W  K  H  E  M  L  F  L  L  R  V  T  I  V  T  S  P  R  D  I  V  I  K  R  G  I  K  *  T  N  Q  R  V  V  R  F  I  G  V  K  D  L  V  I  I  L  L  *  L  V  E  F  *  L  V  E  L  L  G  K  W  Q  G  S  F  M  S  I  K  M  K  T  N  L  V  M  L  N  L  R  R  T  S  I  L  L  L  R  R  V  M  K  R  A  L  S  L  I  M  T  N  Q  L  I  P  L  I  L  G  G  L  I  L   </first_frame>
            <second_frame>  T  I  Q  I  D  L  Y  F  N  P   : G  I  L  Q  L  C  L  N  *  F  V  K  V  G  F  L  F  F  V  L  I  *  K  G  I  D  S  S  S  Y  F  *  Q  E  L  G  G  Y  S  E  E  K  L  D  I  Q  I  P  F  L  R  K  L  L  H  F  R  Y  W  V  V  K  D  *  S  *  N  E  E  S  C  N  L  Y  Y  *  S  V  L  *  D  S  *  E  S  S  I  P  C  G  Y  V  V  F  L  G  I  S  V  Q  I  I  S  F  C  V  F  N  L  G  V  C  L  P  Y  S  C  L  H  C  C  T  A  W  N  F  T  K  L  W  S  A  *  Y  T  C  I  *  M  G  R  K  H  N  *  S  Y  C  A  F  G  N  T  R  C  Y  S  C  *  E  *  Q  *  L  L  H  R  E  I  *  *  S  R  E  G  *  S  R  P  I  N  A  *  *  G  S  *  G  *  K  I  W  *  S  F  C  S  N  W  W  S  F  S  W  W  S  Y  W  A  S  G  K  G  V  L  *  A  *  K  *  R  Q  I  *  *  C  *  T  Y  G  G  P  V  F  S  Y  F  E  G  *  *  R  E  R  *  V  *  *  *  Q  I  S  *  F  L  *  F  *  E  G  *  F  *  </second_frame>
            <third_frame>   L  F  K  L  I  Y  I  S  T  L  :  E  F  Y  N  C  V  *  I  D  L  *  R  W  D  F  Y  S  L  S  *  S  R  R  E  L  I  L  V  H  I  F  D  K  N  *  V  G  T  V  K  K  N  *  I  F  R  S  H  F  *  G  S  C  F  I  L  G  I  G  L  *  R  I  E  V  K  M  R  K  A  V  I  F  T  I  E  V  C  Y  R  T  V  R  N  H  P  F  L  V  G  M  L  C  F  L  V  F  L  Y  R  S  F  P  F  V  F  S  I  L  V  S  V  S  P  I  L  V  C  T  A  A  L  L  G  T  L  L  S  Y  G  Q  P  N  I  P  V  F  E  W  E  E  N  T  T  D  H  I  V  P  L  E  T  R  D  A  I  L  V  E  S  D  N  S  Y  F  T  E  R  Y  S  D  Q  E  R  D  K  V  D  Q  S  T  R  S  E  V  H  R  G  K  R  F  G  D  H  S  A  L  I  G  G  V  L  V  G  G  V  T  G  Q  V  A  R  E  F  Y  E  H  K  N  E  D  K  F  S  D  A  E  L  T  E  D  Q  Y  S  P  T  S  K  G  N  E  E  S  V  E  F  D  N  D  K  S  V  D  S  F  D  S  R  R  A  N  F  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56065" stop="56670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEVKMRKAVIFTIEVCYRTVRNHPFLVGMLCFLVFLYRSFPFVFSILVSVSPILVCTAALLGTLLSYGQPNIPVFEWEENTTDHIVPLETRDAILVESDNSYFTERYSDQERDKVDQSTRSEVHRGKRFGDHSALIGGVLVGGVTGQVAREFYEHKNEDKFSDAELTEDQYSPTSKGNEESVEFDNDKSVDSFDSRRANFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="57443" PGL_stop="58002"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57443" e_stop="58002"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57443" e_stop="58002" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57443" stop="58002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57459" stop="57962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGATACCCGTTTTAGACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTT</gDNA_template>
            <first_frame> K  I  P  V  L  D  L  T  L  F  L  M  *  W  L  L  K  E  Q  V  I  H  H  Y  K  G  T  P  A  I  S  V  I  P  K  *  V  L  F  L  K  Q  S  H  R  A  Q  L  K  I  W  N  T  R  T  S  M  R  K  M  *  K  T  R  T  *  M  K  N  W  K  A  K  T  *  Q  M  N  I  S  S  R  N  Q  S  *  Y  L  R  *  S  M  L  P  R  I  L  D  M  E  A  N  P  P  K  K  *  N  V  W  S  *  V  H  L  I  R  G  I  L  N  S  M  T  L  M  L  H  Y  Q  M  W  K  I  I  M  I  W  Y  Q  M  Y  S  M  K  K  Q  Q  P  A  P  W  Y  L  I  R  L  K  F  V  Q  S  Q  Q  H  L  N  K  N  A  V  V  S  Q  A  P  P  P  H  Q  K  *  V  K  R  S   </first_frame>
            <second_frame>  R  Y  P  F  *  T  L  L  C  S  *  C  D  G  C  *  R  N  K  L  F  T  I  T  K  A  P  Q  R  S  Q  *  F  Q  S  K  F  C  S  *  N  R  V  T  G  L  N  *  R  S  G  I  Q  E  P  Q  *  G  R  C  R  R  Q  E  P  E  *  R  T  G  R  Q  R  P  D  R  *  T  Y  L  Q  G  T  K  A  D  I  *  D  R  A  C  Y  R  G  Y  W  T  W  K  P  I  L  R  R  S  R  M  F  G  P  R  C  I  *  *  E  G  Y  *  T  R  *  H  *  C  Y  T  T  K  C  G  K  S  S  *  F  G  T  K  C  I  P  *  R  N  S  S  Q  L  H  G  T  *  S  V  *  N  L  F  K  V  S  N  I  *  T  K  M  Q  *  S  V  K  L  L  L  L  I  R  S  R  *  K  D  L  </second_frame>
            <third_frame>   D  T  R  F  R  P  Y  F  V  P  D  V  M  A  A  E  G  T  S  Y  S  P  L  Q  R  H  P  S  D  L  S  D  S  K  V  S  S  V  L  E  T  E  S  Q  G  S  I  E  D  L  E  Y  K  N  L  N  E  E  D  V  E  D  K  N  L  N  E  E  L  E  G  K  D  L  T  D  E  H  I  F  K  E  P  K  L  I  S  K  I  E  H  A  T  E  D  I  G  H  G  S  Q  S  S  E  E  V  E  C  L  V  L  G  A  S  D  K  R  D  I  E  L  D  D  T  D  V  T  L  P  N  V  E  N  H  H  D  L  V  P  N  V  F  H  E  E  T  A  A  S  S  M  V  L  D  P  S  K  I  C  S  K  S  A  T  S  E  Q  K  C  S  S  Q  S  S  S  S  S  S  S  E  V  G  E  K  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57445" stop="58002"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DTRFRPYFVPDVMAAEGTSYSPLQRHPSDLSDSKVSSVLETESQGSIEDLEYKNLNEEDVEDKNLNEELEGKDLTDEHIFKEPKLISKIEHATEDIGHGSQSSEEVECLVLGASDKRDIELDDTDVTLPNVENHHDLVPNVFHEETAASSMVLDPSKICSKSATSEQKCSSQSSSSSSSEVGEKIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="58016" PGL_stop="60535"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58016" e_stop="58476"/>
            <exon e_start="60470" e_stop="60535"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58016" e_stop="58476" e_length="461"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58477" i_stop="60469" i_length="1993"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60470" e_stop="60535" e_length="66"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58016" stop="58476"/>
              <exon start="60470" stop="60535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58017" stop="58476"/>
              <exon start="60470" stop="60510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA : GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAA</gDNA_template>
            <first_frame> W  *  D  Q  V  Q  R  N  R  R  A  M  L  K  P  S  L  S  I  L  R  R  M  C  Q  I  *  T  S  Q  A  V  Q  W  R  R  V  H  I  W  N  L  F  M  M  P  V  L  L  Q  L  R  K  I  L  L  P  P  Q  L  L  Q  I  C  F  *  N  L  K  P  G  M  P  L  R  G  N  L  W  Q  I  I  E  T  L  R  S  P  F  R  R  R  N  K  Y  F  H  Q  Q  I  P  K  N  C  G  *  G  R  Q  *  L  T  N  M  S  L  M  L  Q  S  W  R  Y  Q  T  T  M  K  S  L  A  V  Q  V  L  F  R  C  L  *  Q  I  V  R  H  L  L  I  R  S  L  P  Q  K :   R  H  L  F  Q  R  R  K  Q  G  P  Q  K  A  *  M  C  Q  K  F  K   </first_frame>
            <second_frame>  G  E  I  K  F  R  G  I  D  V  P  C  *  N  H  L  *  A  S  F  A  E  C  V  R  S  E  H  H  K  Q  F  S  G  G  E  F  T  F  G  T  Y  L  *  C  Q  S  S  F  N  *  E  K  Y  F  F  L  L  N  C  F  R  S  A  S  R  I  *  N  R  A  C  L  *  E  G  T  C  G  K  *  S  R  H  *  E  V  H  S  D  E  G  T  N  I  F  I  S  R  F  Q  R  I  A  A  E  G  G  N  N  *  Q  T  *  A  *  C  C  K  V  G  D  I  K  Q  R  *  S  L  W  Q  C  K  C  S  S  G  A  C  S  R  *  S  D  I  Y  *  F  E  V  F  H  K   : R  G  T  C  F  N  G  E  S  K  D  H  R  K  L  E  C  V  K  S  S  R  </second_frame>
            <third_frame>   V  R  S  S  S  E  E  S  T  C  H  V  E  T  I  S  E  H  P  S  P  N  V  S  D  L  N  I  T  S  S  S  V  E  E  S  S  H  L  E  P  I  Y  D  A  S  P  P  S  I  K  K  N  T  S  S  S  S  I  A  S  D  L  L  L  E  S  E  T  G  H  A  S  E  R  E  P  V  A  N  N  R  D  I  E  K  S  I  P  T  K  E  Q  I  F  S  S  A  D  S  K  E  L  R  L  R  E  A  I  T  D  K  H  E  L  D  V  A  K  L  E  I  S  N  N  D  E  V  F  G  S  A  S  A  L  P  V  P  V  A  D  S  Q  T  S  I  D  S  K  S  S  T  K  :  E  A  P  V  S  T  E  K  A  R  T  T  E  S  L  N  V  S  K  V  Q  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58018" stop="58476"/>
                    <exon start="60470" stop="60535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRSSSEESTCHVETISEHPSPNVSDLNITSSSVEESSHLEPIYDASPPSIKKNTSSSSIASDLLLESETGHASEREPVANNRDIEKSIPTKEQIFSSADSKELRLREAITDKHELDVAKLEISNNDEVFGSASALPVPVADSQTSIDSKSSTKEAPVSTEKARTTESLNVSKVQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="60712" PGL_stop="71022"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60712" e_stop="61290"/>
            <exon e_start="61504" e_stop="61520"/>
            <exon e_start="62209" e_stop="62213"/>
            <exon e_start="62289" e_stop="62307"/>
            <exon e_start="63840" e_stop="63849"/>
            <exon e_start="64612" e_stop="64648"/>
            <exon e_start="66091" e_stop="66111"/>
            <exon e_start="66608" e_stop="66688"/>
            <exon e_start="66903" e_stop="66929"/>
            <exon e_start="67108" e_stop="67119"/>
            <exon e_start="68137" e_stop="68154"/>
            <exon e_start="69737" e_stop="69741"/>
            <exon e_start="69853" e_stop="69874"/>
            <exon e_start="69944" e_stop="69965"/>
            <exon e_start="70018" e_stop="70028"/>
            <exon e_start="70859" e_stop="71022"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.750" e_score="0.998"/>
          <exon-intron don_prob="0.000" acc_prob="0.170" e_score="0.647"/>
          <exon-intron don_prob="0.291" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.864" acc_prob="0.973" e_score="0.632"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.800"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="0.649"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.667"/>
          <exon-intron don_prob="0.971" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.547" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.553" acc_prob="0.949" e_score="0.667"/>
          <exon-intron don_prob="0.274" acc_prob="0.000" e_score="0.556"/>
          <exon-intron don_prob="0.900" acc_prob="0.569" e_score="0.600"/>
          <exon-intron don_prob="0.640" acc_prob="0.893" e_score="0.545"/>
          <exon-intron don_prob="0.015" acc_prob="0.000" e_score="0.682"/>
          <exon-intron don_prob="0.832" acc_prob="0.000" e_score="0.727"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="60712" e_stop="61290" e_length="579"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.750">
            <gDNA_intron_boundary i_start="61291" i_stop="61503" i_length="213"/>
          </intron>
          <exon e_serial="2" e_score="0.647">
            <gDNA_exon_boundary e_start="61504" e_stop="61520" e_length="17"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.170">
            <gDNA_intron_boundary i_start="61521" i_stop="62208" i_length="688"/>
          </intron>
          <exon e_serial="3" e_score="0.800">
            <gDNA_exon_boundary e_start="62209" e_stop="62213" e_length="5"/>
          </exon>
          <intron i_serial="3" don_prob="0.291" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62214" i_stop="62288" i_length="75"/>
          </intron>
          <exon e_serial="4" e_score="0.632">
            <gDNA_exon_boundary e_start="62289" e_stop="62307" e_length="19"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.973">
            <gDNA_intron_boundary i_start="62308" i_stop="63839" i_length="1532"/>
          </intron>
          <exon e_serial="5" e_score="0.800">
            <gDNA_exon_boundary e_start="63840" e_stop="63849" e_length="10"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63850" i_stop="64611" i_length="762"/>
          </intron>
          <exon e_serial="6" e_score="0.649">
            <gDNA_exon_boundary e_start="64612" e_stop="64648" e_length="37"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="64649" i_stop="66090" i_length="1442"/>
          </intron>
          <exon e_serial="7" e_score="0.667">
            <gDNA_exon_boundary e_start="66091" e_stop="66111" e_length="21"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66112" i_stop="66607" i_length="496"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="66608" e_stop="66688" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.971" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66689" i_stop="66902" i_length="214"/>
          </intron>
          <exon e_serial="9" e_score="0.667">
            <gDNA_exon_boundary e_start="66903" e_stop="66929" e_length="27"/>
          </exon>
          <intron i_serial="9" don_prob="0.547" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66930" i_stop="67107" i_length="178"/>
          </intron>
          <exon e_serial="10" e_score="0.667">
            <gDNA_exon_boundary e_start="67108" e_stop="67119" e_length="12"/>
          </exon>
          <intron i_serial="10" don_prob="0.553" acc_prob="0.949">
            <gDNA_intron_boundary i_start="67120" i_stop="68136" i_length="1017"/>
          </intron>
          <exon e_serial="11" e_score="0.556">
            <gDNA_exon_boundary e_start="68137" e_stop="68154" e_length="18"/>
          </exon>
          <intron i_serial="11" don_prob="0.274" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68155" i_stop="69736" i_length="1582"/>
          </intron>
          <exon e_serial="12" e_score="0.600">
            <gDNA_exon_boundary e_start="69737" e_stop="69741" e_length="5"/>
          </exon>
          <intron i_serial="12" don_prob="0.900" acc_prob="0.569">
            <gDNA_intron_boundary i_start="69742" i_stop="69852" i_length="111"/>
          </intron>
          <exon e_serial="13" e_score="0.545">
            <gDNA_exon_boundary e_start="69853" e_stop="69874" e_length="22"/>
          </exon>
          <intron i_serial="13" don_prob="0.640" acc_prob="0.893">
            <gDNA_intron_boundary i_start="69875" i_stop="69943" i_length="69"/>
          </intron>
          <exon e_serial="14" e_score="0.682">
            <gDNA_exon_boundary e_start="69944" e_stop="69965" e_length="22"/>
          </exon>
          <intron i_serial="14" don_prob="0.015" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69966" i_stop="70017" i_length="52"/>
          </intron>
          <exon e_serial="15" e_score="0.727">
            <gDNA_exon_boundary e_start="70018" e_stop="70028" e_length="11"/>
          </exon>
          <intron i_serial="15" don_prob="0.832" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70029" i_stop="70858" i_length="830"/>
          </intron>
          <exon e_serial="16" e_score="0.957">
            <gDNA_exon_boundary e_start="70859" e_stop="71022" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60712" stop="61218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61210" stop="61290"/>
              <exon start="61504" stop="61520"/>
              <exon start="62209" stop="62213"/>
              <exon start="62289" stop="62307"/>
              <exon start="63840" stop="63849"/>
              <exon start="64612" stop="64648"/>
              <exon start="66091" stop="66111"/>
              <exon start="66608" stop="66688"/>
              <exon start="66903" stop="66929"/>
              <exon start="67108" stop="67119"/>
              <exon start="68137" stop="68154"/>
              <exon start="69737" stop="69741"/>
              <exon start="69853" stop="69874"/>
              <exon start="69944" stop="69965"/>
              <exon start="70018" stop="70028"/>
              <exon start="70859" stop="71022"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E592219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATTAATAAGCAGACCCTTGAAGAGAATGCTGACAGACGCGTCCTTCATGATTCGATTGATGATGTGCATGTTAGAGAATCCAAAGGAAAAGGAGTTTCTCTACATTCACAGGATGTGGGGGCAGACTTAGCTGTGAAACAAGTCATGAAAAATGATATAGATAAACCAAACACGAGCCTTCAACAAGCATTAAAAACTGAATCACGTGAAGCTAGCTCATCTAAGAACTCCGAATCAAGTCTCAAGAAAATTGTTGTATCTGGAAGAAGTGAAGCTGATGCAGGCAAAATAGATCAGGAAGTTGTAAAACAAGAAGATAAGGTAACTACCACCGAAAAGCCAAATCTTGCCGTTGAGTTGCCTCAAGAGACAGGTGTAGTTACCGGTGATGTTATAGTCAAGAAAGAAAACCACACAAGTCAGGCTCAAGTTCAAGTTCCAGTGACTTCAAAAGAAAATGTGGATAGCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAT : AGACTATAGTTTTTGGC : GGGTG : GACCTCCACTTCTGGACAG : CCACAGACAC : CAGAGTTTACCTGTCTCAAGTCCTTGAAGTCGCTCAT : ATAGAAGGGTGAAAACTGAAT : GGTGCGAAGTTAACCAATGCAAATCTGAAGGGTGCAAACCTTCAAAGAGCTTATCTTCGGCATGTGAATCTTCGTGATACA : CATCTGGAAGGAAAAAAAGTTGATAAT : ACCATCTTTCCT : GGCTGCAACATGCTTAAG : CGATA : CCCTTGTTCGACTCCTATTTCC : TCTTCCAAAAGCAGCATCTCCA : GAGGAGACCAA : CAAAAAGGATTTGTATAGCAATAGTATCAAGCCTTACATGTATTGACCAACTATTTTAGTTTAATTTGGTGGTCTAAATCTCAATTTAATTATCTGCATGTGTGTAAACCCAATTTGTTTCAAACCATTCTGGCCTTGTAAAAATGTTTTAACTTGTCAAATCT</gDNA_template>
            <first_frame> F  D  *  *  A  D  P  *  R  E  C  *  Q  T  R  P  S  *  F  D  *  *  C  A  C  *  R  I  Q  R  K  R  S  F  S  T  F  T  G  C  G  G  R  L  S  C  E  T  S  H  E  K  *  Y  R  *  T  K  H  E  P  S  T  S  I  K  N  *  I  T  *  S  *  L  I  *  E  L  R  I  K  S  Q  E  N  C  C  I  W  K  K  *  S  *  C  R  Q  N  R  S  G  S  C  K  T  R  R  *  G  N  Y  H  R  K  A  K  S  C  R  *  V  A  S  R  D  R  C  S  Y  R  *  C  Y  S  Q  E  R  K  P  H  K  S  G  S  S  S  S  S  S  D  F  K  R  K  C  G  *  L  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L  N  :  R  L  *  F  L  A :   G   : G  P  P  L  L  D  S :   H  R  H  :  Q  S  L  P  V  S  S  P  *  S  R  S   : Y  R  R  V  K  T  E   : W  C  E  V  N  Q  C  K  S  E  G  C  K  P  S  K  S  L  S  S  A  C  E  S  S  *  Y   : T  S  G  R  K  K  S  *  *   : Y  H  L  S   : W  L  Q  H  A  *   : A  I  :  P  L  F  D  S  Y  F   : L  F  Q  K  Q  H  L  Q :   R  R  P   : T  K  R  I  C  I  A  I  V  S  S  L  T  C  I  D  Q  L  F  *  F  N  L  V  V  *  I  S  I  *  L  S  A  C  V  *  T  Q  F  V  S  N  H  S  G  L  V  K  M  F  *  L  V  K  S </first_frame>
            <second_frame>  L  I  N  K  Q  T  L  E  E  N  A  D  R  R  V  L  H  D  S  I  D  D  V  H  V  R  E  S  K  G  K  G  V  S  L  H  S  Q  D  V  G  A  D  L  A  V  K  Q  V  M  K  N  D  I  D  K  P  N  T  S  L  Q  Q  A  L  K  T  E  S  R  E  A  S  S  S  K  N  S  E  S  S  L  K  K  I  V  V  S  G  R  S  E  A  D  A  G  K  I  D  Q  E  V  V  K  Q  E  D  K  V  T  T  T  E  K  P  N  L  A  V  E  L  P  Q  E  T  G  V  V  T  G  D  V  I  V  K  K  E  N  H  T  S  Q  A  Q  V  Q  V  P  V  T  S  K  E  N  V  D  S  *  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  *  I :   D  Y  S  F  W   : R  V  :  D  L  H  F  W  T   : A  T  D  T :   R  V  Y  L  S  Q  V  L  E  V  A  H  :  I  E  G  *  K  L  N  :  G  A  K  L  T  N  A  N  L  K  G  A  N  L  Q  R  A  Y  L  R  H  V  N  L  R  D  T  :  H  L  E  G  K  K  V  D  N  :  T  I  F  P  :  G  C  N  M  L  K  :  R  Y :   P  C  S  T  P  I  S  :  S  S  K  S  S  I  S   : R  G  D  Q  :  Q  K  G  F  V  *  Q  *  Y  Q  A  L  H  V  L  T  N  Y  F  S  L  I  W  W  S  K  S  Q  F  N  Y  L  H  V  C  K  P  N  L  F  Q  T  I  L  A  L  *  K  C  F  N  L  S  N   </second_frame>
            <third_frame>   *  L  I  S  R  P  L  K  R  M  L  T  D  A  S  F  M  I  R  L  M  M  C  M  L  E  N  P  K  E  K  E  F  L  Y  I  H  R  M  W  G  Q  T  *  L  *  N  K  S  *  K  M  I  *  I  N  Q  T  R  A  F  N  K  H  *  K  L  N  H  V  K  L  A  H  L  R  T  P  N  Q  V  S  R  K  L  L  Y  L  E  E  V  K  L  M  Q  A  K  *  I  R  K  L  *  N  K  K  I  R  *  L  P  P  K  S  Q  I  L  P  L  S  C  L  K  R  Q  V  *  L  P  V  M  L  *  S  R  K  K  T  T  Q  V  R  L  K  F  K  F  Q  *  L  Q  K  K  M  W  I  A  S  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  K   : *  T  I  V  F  G  :  G  W :   T  S  T  S  G  Q  :  P  Q  T   : P  E  F  T  C  L  K  S  L  K  S  L  I :   *  K  G  E  N  *  M :   V  R  S  *  P  M  Q  I  *  R  V  Q  T  F  K  E  L  I  F  G  M  *  I  F  V  I  H :   I  W  K  E  K  K  L  I  I :   P  S  F  L :   A  A  T  C  L  S :   D   : T  L  V  R  L  L  F  P :   L  P  K  A  A  S  P  :  E  E  T  N :   K  K  D  L  Y  S  N  S  I  K  P  Y  M  Y  *  P  T  I  L  V  *  F  G  G  L  N  L  N  L  I  I  C  M  C  V  N  P  I  C  F  K  P  F  W  P  C  K  N  V  L  T  C  Q  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60713" stop="61186"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LINKQTLEENADRRVLHDSIDDVHVRESKGKGVSLHSQDVGADLAVKQVMKNDIDKPNTSLQQALKTESREASSSKNSESSLKKIVVSGRSEADAGKIDQEVVKQEDKVTTTEKPNLAVELPQETGVVTGDVIVKKENHTSQAQVQVPVTSKENVDS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66103" stop="66111"/>
                    <exon start="66608" stop="66688"/>
                    <exon start="66903" stop="66929"/>
                    <exon start="67108" stop="67119"/>
                    <exon start="68137" stop="68154"/>
                    <exon start="69737" stop="69741"/>
                    <exon start="69853" stop="69874"/>
                    <exon start="69944" stop="69965"/>
                    <exon start="70018" stop="70028"/>
                    <exon start="70859" stop="70876"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLNGAKLTNANLKGANLQRAYLRHVNLRDTHLEGKKVDNTIFPGCNMLKRYPCSTPISSSKSSISRGDQQKGFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="74716" PGL_stop="74963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74716" e_stop="74963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="74716" e_stop="74963" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74716" stop="74963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424919" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATTTAACAGGAGGCGAAAAGCCAAAATTTGCAGGGTATACAGAAAGGACCTGGGTCCTGGGGTGGTCACCCAAATATGTAAAGATGAAGTTACAAAACCCCTTGAGCATGAGTCAACTCAACTGAACATTCCTATGAACTTTACAAATAACTTGACAGAATCAAAATAACAGGTCAGTATGACAGTCAATCCTTTGCTAGAAACATCAGTTCAGTGGGATTCCCAAATCACTCCTTCAATCTGTA</gDNA_template>
            <first_frame> Y  I  *  Q  E  A  K  S  Q  N  L  Q  G  I  Q  K  G  P  G  S  W  G  G  H  P  N  M  *  R  *  S  Y  K  T  P  *  A  *  V  N  S  T  E  H  S  Y  E  L  Y  K  *  L  D  R  I  K  I  T  G  Q  Y  D  S  Q  S  F  A  R  N  I  S  S  V  G  F  P  N  H  S  F  N  L   </first_frame>
            <second_frame>  I  F  N  R  R  R  K  A  K  I  C  R  V  Y  R  K  D  L  G  P  G  V  V  T  Q  I  C  K  D  E  V  T  K  P  L  E  H  E  S  T  Q  L  N  I  P  M  N  F  T  N  N  L  T  E  S  K  *  Q  V  S  M  T  V  N  P  L  L  E  T  S  V  Q  W  D  S  Q  I  T  P  S  I  C  </second_frame>
            <third_frame>   Y  L  T  G  G  E  K  P  K  F  A  G  Y  T  E  R  T  W  V  L  G  W  S  P  K  Y  V  K  M  K  L  Q  N  P  L  S  M  S  Q  L  N  *  T  F  L  *  T  L  Q  I  T  *  Q  N  Q  N  N  R  S  V  *  Q  S  I  L  C  *  K  H  Q  F  S  G  I  P  K  S  L  L  Q  S  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="83286" PGL_stop="74726"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83286" e_stop="82705"/>
            <exon e_start="82094" e_stop="82005"/>
            <exon e_start="81928" e_stop="81692"/>
            <exon e_start="81439" e_stop="81218"/>
            <exon e_start="81131" e_stop="81020"/>
            <exon e_start="78889" e_stop="78731"/>
            <exon e_start="77436" e_stop="77384"/>
            <exon e_start="77273" e_stop="77194"/>
            <exon e_start="77077" e_stop="76998"/>
            <exon e_start="76885" e_stop="76845"/>
            <exon e_start="75869" e_stop="75821"/>
            <exon e_start="74958" e_stop="74726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.330" e_score="0.983"/>
          <exon-intron don_prob="0.973" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.458" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83286" e_stop="82705" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.925">
            <gDNA_intron_boundary i_start="82704" i_stop="82095" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82094" e_stop="82005" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.952">
            <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="81928" e_stop="81692" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.330">
            <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81439" e_stop="81218" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81131" e_stop="81020" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.762">
            <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="78889" e_stop="78731" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78730" i_stop="77437" i_length="1294"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="77436" e_stop="77384" e_length="53"/>
          </exon>
          <intron i_serial="7" don_prob="0.458" acc_prob="0.990">
            <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77273" e_stop="77194" e_length="80"/>
          </exon>
          <intron i_serial="8" don_prob="0.873" acc_prob="0.933">
            <gDNA_intron_boundary i_start="77193" i_stop="77078" i_length="116"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="77077" e_stop="76998" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76997" i_stop="76886" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="0.976">
            <gDNA_exon_boundary e_start="76885" e_stop="76845" e_length="41"/>
          </exon>
          <intron i_serial="10" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="76844" i_stop="75870" i_length="975"/>
          </intron>
          <exon e_serial="11" e_score="0.980">
            <gDNA_exon_boundary e_start="75869" e_stop="75821" e_length="49"/>
          </exon>
          <intron i_serial="11" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75820" i_stop="74959" i_length="862"/>
          </intron>
          <exon e_serial="12" e_score="0.936">
            <gDNA_exon_boundary e_start="74958" e_stop="74726" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83286" stop="82705"/>
              <exon start="82094" stop="82005"/>
              <exon start="81928" stop="81915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82047" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81020"/>
              <exon start="78889" stop="78815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82047" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82017" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81416" stop="81218"/>
              <exon start="81131" stop="81020"/>
              <exon start="78889" stop="78731"/>
              <exon start="77436" stop="77384"/>
              <exon start="77273" stop="77205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243123" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77427" stop="77384"/>
              <exon start="77273" stop="77194"/>
              <exon start="77077" stop="76998"/>
              <exon start="76885" stop="76845"/>
              <exon start="75869" stop="75821"/>
              <exon start="74958" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77194"/>
              <exon start="77077" stop="76998"/>
              <exon start="76885" stop="76845"/>
              <exon start="75869" stop="75821"/>
              <exon start="74958" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG : ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT : GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAG : GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG : GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT : CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG : GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA : GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAG : TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG : GTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAG : TCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT : ATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</gDNA_template>
            <first_frame> S  A  E  N  E  E  S  K  K  H  S  L  H  P  M  E  V  E  K  A  E  C  V  S  E  F  G  A  T  E  N  T  L  E  A  C  M  L  E  C  K  D  S  V  V  E  N  D  N  M  D  S  L  E  T  Q  I  V  V  L  D  S  E  K  N  S  L  N  V  S  T  S  D  N  V  D  S  S  K  D  Q  N  L  V  Q  L  G  E  E  G  Y  S  Q  G  R  E  E  T  K  E  A  V  D  T  S  L  R  L  N  E  G  I  L  L  S  G  E  M  E  A  L  E  R  K  K  R  R  R  T  E  I  F  I  G  G  L  G  K  E  S  K  E  E  D  I  R  S  I  F  G  E  V  G  E  V  V  D  V  R  L  L  I  N  H  E  T  G  K  N  K  G  F  A  F  L  R  Y  A  S  A  A  D  A  K  K  A  V  E  R  Y  S  K  V  E  :  I  S  G  K  Q  C  R  V  S  L  A  E  G  N  D  T  I  Y  L  G  N  I  D  K  K  W  K  T  E  D  :  V  I  D  L  L  K  K  A  G  I  E  N  I  D  K  V  T  V  M  A  N  P  N  N  I  E  Q  N  R  G  F  A  F  V  E  L  E  T  S  K  E  A  Q  I  A  F  S  K  L  Q  K  K  D  A  F  G  K  H  M  N  V  K  V  A  W  A  Q  P  L  I  E  P  N  E  E  E  L  L  K  :  V  K  S  V  Y  A  E  Y  L  P  S  S  W  I  E  E  K  V  R  D  Y  F  G  K  F  G  E  I  E  S  V  V  L  A  K  D  L  P  S  S  R  R  K  D  F  A  F  V  N  Y  I  S  R  E  S  A  L  A  C  I  E  G  F  S  H  E  P  A  N  E  S  G  S  K  :  V  S  I  K  V  S  L  A  K  P  M  P  K  S  K  Q  T  K  R  V  T  L  P  T  R  R  E  P  P  E  K  K  K  I  Q  D  H   : S  I  L  K  R  H  E  P  S  R  K  V  N  Y  M  R  R  Y  D  E  D  H  R  V  E  G  S  S  S  T  T  N  E  L  L  H  L  L  R  Q  Q  G  P  V  R  Q  L  H  S  G  L  N  M   : G  I  N  H  Q  Y  S  L  S  G  S  K  R  P  F  S  A  V  :  V  H  N  P  H  R  M  D  S  S  G  V  S  R  V  H  L  E  S  S  F  P  T  A  N  R  S :   M  L  P  H  S  R  G  P  L  G  T  P  S  F  A  Y  Y  G  Q  L  G  S  D  H  S  P   : G  S  V  Y  G  V  Q  S  F  P  N  S  F  Q  :  S  H  D  H  D  P  Y  G  G  N  R  S  I  Y  R  R   : Y  *  R  S  D  L  G  I  P  L  N  *  C  F  *  Q  R  I  D  C  H  T  D  L  L  F  *  F  C  Q  V  I  C  K  V  H  R  N  V  Q  L  S  *  L  M  L  K  G  F  C  N  F  I  F  T  Y  L  G  D  H  P  R  T  Q  V  L  S  V  Y  P  A  N  F  G  F  S  P  P </first_frame>
            <second_frame>  Q  L  K  M  R  S  Q  R  N  I  V  Y  I  R  W  K  L  R  R  L  S  V  L  V  S  L  V  Q  L  K  T  H  *  R  L  A  C  W  N  A  K  I  V  L  L  R  M  I  I  W  I  P  L  K  H  K  L  *  F  L  I  Q  K  K  I  V  L  M  F  L  L  V  I  M  W  I  R  V  R  I  K  I  W  F  S  W  E  R  K  G  T  V  K  A  E  R  K  Q  R  K  L  W  I  L  V  *  G  *  M  K  E  F  Y  *  V  G  K  W  R  H  *  N  G  K  R  G  G  G  Q  R  Y  S  L  G  D  *  A  R  S  Q  R  K  R  I  L  G  V  S  L  V  R  L  V  R  L  W  M  *  D  C  *  *  I  M  K  Q  E  R  T  R  G  L  L  S  S  G  M  L  L  L  L  M  Q  R  R  L  *  K  D  I  P  K  L  R :   Y  L  G  S  N  V  V  Y  P  L  L  R  V  M  T  Q  Y  T  W  V  I  L  T  R  N  G  R  L  K  M :   *  L  I  Y  *  R  R  L  E  L  K  I  S  I  R  S  Q  L  W  L  I  L  T  T  S  S  R  I  E  A  L  H  L  L  N  L  K  Q  V  K  K  L  R  L  L  S  V  N  S  K  R  R  M  L  L  G  N  T  *  T  *  K  L  H  G  H  S  L  *  L  S  Q  M  K  K  N  C  *  R :   L  N  Q  F  M  L  N  I  Y  L  P  H  G  L  K  K  K  C  E  T  T  L  A  N  L  V  K  L  R  V  L  F  L  Q  K  I  F  L  P  Q  G  E  K  I  L  P  L  S  I  I  *  A  A  S  L  L  L  R  A  L  K  D  S  V  M  N  Q  L  M  K  A  D  P  R :   *  A  L  R  Y  L  L  L  N  P  C  Q  R  V  S  K  L  N  V  *  P  F  L  L  E  G  N  L  R  R  R  R  K  Y  R  T  I  :  P  S  *  R  G  M  N  P  A  E  R  *  T  T  *  E  D  M  M  R  I  T  E  L  K  D  L  L  L  Q  P  M  N  F  C  T  S  *  D  N  K  G  Q  F  V  S  S  I  P  V  *  T  W  :  V  L  T  I  S  T  R  Y  L  E  A  S  D  R  F  Q  L  * :   Y  I  I  H  I  V  W  I  P  V  E  F  L  E  C  T  *  K  A  L  S  L  L  Q  T  E   : V  C  C  H  I  V  V  D  L  W  V  H  H  L  L  P  I  M  A  S  L  A  V  T  I  H  Q  :  V  Q  F  M  G  S  K  A  F  R  I  L  F  S :   L  M  T  T  T  L  M  V  E  I  V  A  Y  I  V  D  :  I  E  G  V  I  W  E  S  H  *  T  D  V  S  S  K  G  L  T  V  I  L  T  C  Y  F  D  S  V  K  L  F  V  K  F  I  G  M  F  S  *  V  D  S  C  S  R  G  F  V  T  S  S  L  H  I  W  V  T  T  P  G  P  R  S  F  L  Y  T  L  Q  I  L  A  F  R  L   </second_frame>
            <third_frame>   S  *  K  *  G  V  K  E  T  *  F  T  S  D  G  S  *  E  G  *  V  C  *  *  V  W  C  N  *  K  H  I  R  G  L  H  V  G  M  Q  R  *  C  C  *  E  *  *  Y  G  F  P  *  N  T  N  C  S  S  *  F  R  K  K  *  S  *  C  F  Y  *  *  *  C  G  F  E  *  G  S  K  F  G  S  V  G  R  G  R  V  Q  S  R  Q  R  G  N  K  G  S  C  G  Y  *  S  E  V  E  *  R  N  S  I  E  W  G  N  G  G  I  R  T  E  K  E  A  E  D  R  D  I  H  W  G  I  R  Q  G  V  K  G  R  G  Y  *  E  Y  L  W  *  G  W  *  G  C  G  C  K  I  V  D  K  S  *  N  R  K  E  Q  G  V  C  F  P  P  V  C  F  C  C  *  C  K  E  G  C  R  K  I  F  Q  S  *   : D  I  W  E  A  M  S  C  I  P  C  *  G  *  *  H  N  I  P  G  *  Y  *  Q  E  M  E  D  *  R   : C  D  *  S  T  E  E  G  W  N  *  K  Y  R  *  G  H  S  Y  G  *  S  *  Q  H  R  A  E  S  R  L  C  I  C  *  T  *  N  K  *  R  S  S  D  C  F  Q  *  T  P  K  E  G  C  F  W  E  T  H  E  R  K  S  C  M  G  T  A  F  N  *  A  K  *  R  R  T  A  K   : G  *  I  S  L  C  *  I  F  T  F  L  M  D  *  R  K  S  A  R  L  L  W  Q  I  W  *  N  *  E  C  C  S  C  K  R  S  S  F  L  K  E  K  R  F  C  L  C  Q  L  Y  K  P  R  V  C  S  C  V  H  *  R  I  Q  S  *  T  S  *  *  K  R  I  Q   : G  K  H  *  G  I  S  C  *  T  H  A  K  E  *  A  N  *  T  C  N  P  S  Y  *  K  G  T  S  G  E  E  E  N  T  G  P  F :   H  L  E  E  A  *  T  Q  Q  K  G  K  L  H  E  K  I  *  *  G  S  Q  S  *  R  I  F  F  Y  N  Q  *  T  S  A  P  L  E  T  T  R  A  S  S  S  A  P  F  R  F  E  H  G :   Y  *  P  S  V  L  V  I  W  K  Q  A  T  V  F  S  C   : S  T  *  S  T  S  Y  G  F  Q  W  S  F  *  S  A  L  R  K  L  F  P  Y  C  K  P  K  :  Y  V  A  T  *  S  W  T  S  G  Y  T  I  F  C  L  L  W  P  A  W  Q  *  P  F  T  R :   F  S  L  W  G  P  K  L  S  E  F  F  S   : V  S  *  P  R  P  L  W  W  K  S  *  H  I  S  *  I :   L  K  E  *  F  G  N  P  T  E  L  M  F  L  A  K  D  *  L  S  Y  *  P  V  I  L  I  L  S  S  Y  L  *  S  S  *  E  C  S  V  E  L  T  H  A  Q  G  V  L  *  L  H  L  Y  I  F  G  *  P  P  Q  D  P  G  P  F  C  I  P  C  K  F  W  L  F  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83286" stop="82705"/>
                    <exon start="82094" stop="82005"/>
                    <exon start="81928" stop="81692"/>
                    <exon start="81439" stop="81218"/>
                    <exon start="81131" stop="81020"/>
                    <exon start="78889" stop="78731"/>
                    <exon start="77436" stop="77384"/>
                    <exon start="77273" stop="77194"/>
                    <exon start="77077" stop="76998"/>
                    <exon start="76885" stop="76845"/>
                    <exon start="75869" stop="75821"/>
                    <exon start="74958" stop="74954"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1707</number_coding_nucleotides>
                  <number_encoded_amino_acids>569</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAENEESKKHSLHPMEVEKAECVSEFGATENTLEACMLECKDSVVENDNMDSLETQIVVLDSEKNSLNVSTSDNVDSSKDQNLVQLGEEGYSQGREETKEAVDTSLRLNEGILLSGEMEALERKKRRRTEIFIGGLGKESKEEDIRSIFGEVGEVVDVRLLINHETGKNKGFAFLRYASAADAKKAVERYSKVEISGKQCRVSLAEGNDTIYLGNIDKKWKTEDVIDLLKKAGIENIDKVTVMANPNNIEQNRGFAFVELETSKEAQIAFSKLQKKDAFGKHMNVKVAWAQPLIEPNEEELLKVKSVYAEYLPSSWIEEKVRDYFGKFGEIESVVLAKDLPSSRRKDFAFVNYISRESALACIEGFSHEPANESGSKVSIKVSLAKPMPKSKQTKRVTLPTRREPPEKKKIQDHSILKRHEPSRKVNYMRRYDEDHRVEGSSSTTNELLHLLRQQGPVRQLHSGLNMGINHQYSLSGSKRPFSAVVHNPHRMDSSGVSRVHLESSFPTANRSMLPHSRGPLGTPSFAYYGQLGSDHSPGSVYGVQSFPNSFQSHDHDPYGGNRSIYRRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83286" e_stop="82705"/>
            <exon e_start="82094" e_stop="82005"/>
            <exon e_start="81928" e_stop="81692"/>
            <exon e_start="81439" e_stop="81218"/>
            <exon e_start="81131" e_stop="81020"/>
            <exon e_start="78889" e_stop="78731"/>
            <exon e_start="78059" e_stop="78053"/>
            <exon e_start="77436" e_stop="77384"/>
            <exon e_start="77273" e_stop="77194"/>
            <exon e_start="77077" e_stop="76998"/>
            <exon e_start="76885" e_stop="76845"/>
            <exon e_start="75869" e_stop="75821"/>
            <exon e_start="74958" e_stop="74726"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="0.960" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.330" e_score="0.983"/>
          <exon-intron don_prob="0.973" acc_prob="0.994" e_score="0.964"/>
          <exon-intron don_prob="0.983" acc_prob="0.762" e_score="0.929"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="0.943"/>
          <exon-intron don_prob="0.550" acc_prob="0.977" e_score="0.429"/>
          <exon-intron don_prob="0.458" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.873" acc_prob="0.933" e_score="0.950"/>
          <exon-intron don_prob="0.983" acc_prob="0.991" e_score="0.988"/>
          <exon-intron don_prob="0.973" acc_prob="0.985" e_score="0.976"/>
          <exon-intron don_prob="0.979" acc_prob="0.993" e_score="0.980"/>
          <exon-only e_score="0.936"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83286" e_stop="82705" e_length="582"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.925">
            <gDNA_intron_boundary i_start="82704" i_stop="82095" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82094" e_stop="82005" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.952">
            <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="81928" e_stop="81692" e_length="237"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.330">
            <gDNA_intron_boundary i_start="81691" i_stop="81440" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="81439" e_stop="81218" e_length="222"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86"/>
          </intron>
          <exon e_serial="5" e_score="0.929">
            <gDNA_exon_boundary e_start="81131" e_stop="81020" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.983" acc_prob="0.762">
            <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130"/>
          </intron>
          <exon e_serial="6" e_score="0.943">
            <gDNA_exon_boundary e_start="78889" e_stop="78731" e_length="159"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78730" i_stop="78060" i_length="671"/>
          </intron>
          <exon e_serial="7" e_score="0.429">
            <gDNA_exon_boundary e_start="78059" e_stop="78053" e_length="7"/>
          </exon>
          <intron i_serial="7" don_prob="0.550" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78052" i_stop="77437" i_length="616"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="77436" e_stop="77384" e_length="53"/>
          </exon>
          <intron i_serial="8" don_prob="0.458" acc_prob="0.990">
            <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110"/>
          </intron>
          <exon e_serial="9" e_score="0.950">
            <gDNA_exon_boundary e_start="77273" e_stop="77194" e_length="80"/>
          </exon>
          <intron i_serial="9" don_prob="0.873" acc_prob="0.933">
            <gDNA_intron_boundary i_start="77193" i_stop="77078" i_length="116"/>
          </intron>
          <exon e_serial="10" e_score="0.988">
            <gDNA_exon_boundary e_start="77077" e_stop="76998" e_length="80"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.991">
            <gDNA_intron_boundary i_start="76997" i_stop="76886" i_length="112"/>
          </intron>
          <exon e_serial="11" e_score="0.976">
            <gDNA_exon_boundary e_start="76885" e_stop="76845" e_length="41"/>
          </exon>
          <intron i_serial="11" don_prob="0.973" acc_prob="0.985">
            <gDNA_intron_boundary i_start="76844" i_stop="75870" i_length="975"/>
          </intron>
          <exon e_serial="12" e_score="0.980">
            <gDNA_exon_boundary e_start="75869" e_stop="75821" e_length="49"/>
          </exon>
          <intron i_serial="12" don_prob="0.979" acc_prob="0.993">
            <gDNA_intron_boundary i_start="75820" i_stop="74959" i_length="862"/>
          </intron>
          <exon e_serial="13" e_score="0.936">
            <gDNA_exon_boundary e_start="74958" e_stop="74726" e_length="233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83286" stop="82705"/>
              <exon start="82094" stop="82005"/>
              <exon start="81928" stop="81915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82047" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81020"/>
              <exon start="78889" stop="78815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82047" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82017" stop="82005"/>
              <exon start="81928" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81861" stop="81692"/>
              <exon start="81439" stop="81218"/>
              <exon start="81131" stop="81020"/>
              <exon start="78889" stop="78731"/>
              <exon start="78059" stop="78053"/>
              <exon start="77436" stop="77384"/>
              <exon start="77273" stop="77248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77427" stop="77384"/>
              <exon start="77273" stop="77194"/>
              <exon start="77077" stop="76998"/>
              <exon start="76885" stop="76845"/>
              <exon start="75869" stop="75821"/>
              <exon start="74958" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77224" stop="77194"/>
              <exon start="77077" stop="76998"/>
              <exon start="76885" stop="76845"/>
              <exon start="75869" stop="75821"/>
              <exon start="74958" stop="74726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG : ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT : GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATATCGATAAGGTCACAGTTATGGCTAATCCTAACAACATCGAGCAGAATCGAGGCTTTGCATTTGTTGAACTTGAAACAAGTAAAGAAGCTCAGATTGCTTTCAGTAAACTCCAAAAGAAGGATGCTTTTGGGAAACACATGAACGTAAAAGTTGCATGGGCACAGCCTTTAATTGAGCCAAATGAAGAAGAACTGCTAAAG : GTTAAATCAGTTTATGCTGAATATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG : GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT : CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG : GTACTGG : GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA : GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACTGCAAACCGAAG : TATGTTGCCACATAGTCGTGGACCTCTGGGTACACCATCTTTTGCCTATTATGGCCAGCTTGGCAGTGACCATTCACCAG : GTTCAGTTTATGGGGTCCAAAGCTTTCCGAATTCTTTTCAG : TCTCATGACCACGACCCTTATGGTGGAAATCGTAGCATATATCGTAGAT : ATTGAAGGAGTGATTTGGGAATCCCACTGAACTGATGTTTCTAGCAAAGGATTGACTGTCATACTGACCTGTTATTTTGATTCTGTCAAGTTATTTGTAAAGTTCATAGGAATGTTCAGTTGAGTTGACTCATGCTCAAGGGGTTTTGTAACTTCATCTTTACATATTTGGGTGACCACCCCAGGACCCAGGTCCTTTCTGTATACCCTGCAAATTTTGGCTTTTCGCCTCCT</gDNA_template>
            <first_frame> S  A  E  N  E  E  S  K  K  H  S  L  H  P  M  E  V  E  K  A  E  C  V  S  E  F  G  A  T  E  N  T  L  E  A  C  M  L  E  C  K  D  S  V  V  E  N  D  N  M  D  S  L  E  T  Q  I  V  V  L  D  S  E  K  N  S  L  N  V  S  T  S  D  N  V  D  S  S  K  D  Q  N  L  V  Q  L  G  E  E  G  Y  S  Q  G  R  E  E  T  K  E  A  V  D  T  S  L  R  L  N  E  G  I  L  L  S  G  E  M  E  A  L  E  R  K  K  R  R  R  T  E  I  F  I  G  G  L  G  K  E  S  K  E  E  D  I  R  S  I  F  G  E  V  G  E  V  V  D  V  R  L  L  I  N  H  E  T  G  K  N  K  G  F  A  F  L  R  Y  A  S  A  A  D  A  K  K  A  V  E  R  Y  S  K  V  E  :  I  S  G  K  Q  C  R  V  S  L  A  E  G  N  D  T  I  Y  L  G  N  I  D  K  K  W  K  T  E  D  :  V  I  D  L  L  K  K  A  G  I  E  N  I  D  K  V  T  V  M  A  N  P  N  N  I  E  Q  N  R  G  F  A  F  V  E  L  E  T  S  K  E  A  Q  I  A  F  S  K  L  Q  K  K  D  A  F  G  K  H  M  N  V  K  V  A  W  A  Q  P  L  I  E  P  N  E  E  E  L  L  K  :  V  K  S  V  Y  A  E  Y  L  P  S  S  W  I  E  E  K  V  R  D  Y  F  G  K  F  G  E  I  E  S  V  V  L  A  K  D  L  P  S  S  R  R  K  D  F  A  F  V  N  Y  I  S  R  E  S  A  L  A  C  I  E  G  F  S  H  E  P  A  N  E  S  G  S  K  :  V  S  I  K  V  S  L  A  K  P  M  P  K  S  K  Q  T  K  R  V  T  L  P  T  R  R  E  P  P  E  K  K  K  I  Q  D  H   : S  I  L  K  R  H  E  P  S  R  K  V  N  Y  M  R  R  Y  D  E  D  H  R  V  E  G  S  S  S  T  T  N  E  L  L  H  L  L  R  Q  Q  G  P  V  R  Q  L  H  S  G  L  N  M   : G  T  G :   Y  *  P  S  V  L  V  I  W  K  Q  A  T  V  F  S  C   : S  T  *  S  T  S  Y  G  F  Q  W  S  F  *  S  A  L  R  K  L  F  P  Y  C  K  P  K  :  Y  V  A  T  *  S  W  T  S  G  Y  T  I  F  C  L  L  W  P  A  W  Q  *  P  F  T  R :   F  S  L  W  G  P  K  L  S  E  F  F  S   : V  S  *  P  R  P  L  W  W  K  S  *  H  I  S  *  I :   L  K  E  *  F  G  N  P  T  E  L  M  F  L  A  K  D  *  L  S  Y  *  P  V  I  L  I  L  S  S  Y  L  *  S  S  *  E  C  S  V  E  L  T  H  A  Q  G  V  L  *  L  H  L  Y  I  F  G  *  P  P  Q  D  P  G  P  F  C  I  P  C  K  F  W  L  F  A  S  </first_frame>
            <second_frame>  Q  L  K  M  R  S  Q  R  N  I  V  Y  I  R  W  K  L  R  R  L  S  V  L  V  S  L  V  Q  L  K  T  H  *  R  L  A  C  W  N  A  K  I  V  L  L  R  M  I  I  W  I  P  L  K  H  K  L  *  F  L  I  Q  K  K  I  V  L  M  F  L  L  V  I  M  W  I  R  V  R  I  K  I  W  F  S  W  E  R  K  G  T  V  K  A  E  R  K  Q  R  K  L  W  I  L  V  *  G  *  M  K  E  F  Y  *  V  G  K  W  R  H  *  N  G  K  R  G  G  G  Q  R  Y  S  L  G  D  *  A  R  S  Q  R  K  R  I  L  G  V  S  L  V  R  L  V  R  L  W  M  *  D  C  *  *  I  M  K  Q  E  R  T  R  G  L  L  S  S  G  M  L  L  L  L  M  Q  R  R  L  *  K  D  I  P  K  L  R :   Y  L  G  S  N  V  V  Y  P  L  L  R  V  M  T  Q  Y  T  W  V  I  L  T  R  N  G  R  L  K  M :   *  L  I  Y  *  R  R  L  E  L  K  I  S  I  R  S  Q  L  W  L  I  L  T  T  S  S  R  I  E  A  L  H  L  L  N  L  K  Q  V  K  K  L  R  L  L  S  V  N  S  K  R  R  M  L  L  G  N  T  *  T  *  K  L  H  G  H  S  L  *  L  S  Q  M  K  K  N  C  *  R :   L  N  Q  F  M  L  N  I  Y  L  P  H  G  L  K  K  K  C  E  T  T  L  A  N  L  V  K  L  R  V  L  F  L  Q  K  I  F  L  P  Q  G  E  K  I  L  P  L  S  I  I  *  A  A  S  L  L  L  R  A  L  K  D  S  V  M  N  Q  L  M  K  A  D  P  R :   *  A  L  R  Y  L  L  L  N  P  C  Q  R  V  S  K  L  N  V  *  P  F  L  L  E  G  N  L  R  R  R  R  K  Y  R  T  I  :  P  S  *  R  G  M  N  P  A  E  R  *  T  T  *  E  D  M  M  R  I  T  E  L  K  D  L  L  L  Q  P  M  N  F  C  T  S  *  D  N  K  G  Q  F  V  S  S  I  P  V  *  T  W  :  V  L   : G  I  N  H  Q  Y  S  L  S  G  S  K  R  P  F  S  A  V  :  V  H  N  P  H  R  M  D  S  S  G  V  S  R  V  H  L  E  S  S  F  P  T  A  N  R  S :   M  L  P  H  S  R  G  P  L  G  T  P  S  F  A  Y  Y  G  Q  L  G  S  D  H  S  P   : G  S  V  Y  G  V  Q  S  F  P  N  S  F  Q  :  S  H  D  H  D  P  Y  G  G  N  R  S  I  Y  R  R   : Y  *  R  S  D  L  G  I  P  L  N  *  C  F  *  Q  R  I  D  C  H  T  D  L  L  F  *  F  C  Q  V  I  C  K  V  H  R  N  V  Q  L  S  *  L  M  L  K  G  F  C  N  F  I  F  T  Y  L  G  D  H  P  R  T  Q  V  L  S  V  Y  P  A  N  F  G  F  S  P  P </second_frame>
            <third_frame>   S  *  K  *  G  V  K  E  T  *  F  T  S  D  G  S  *  E  G  *  V  C  *  *  V  W  C  N  *  K  H  I  R  G  L  H  V  G  M  Q  R  *  C  C  *  E  *  *  Y  G  F  P  *  N  T  N  C  S  S  *  F  R  K  K  *  S  *  C  F  Y  *  *  *  C  G  F  E  *  G  S  K  F  G  S  V  G  R  G  R  V  Q  S  R  Q  R  G  N  K  G  S  C  G  Y  *  S  E  V  E  *  R  N  S  I  E  W  G  N  G  G  I  R  T  E  K  E  A  E  D  R  D  I  H  W  G  I  R  Q  G  V  K  G  R  G  Y  *  E  Y  L  W  *  G  W  *  G  C  G  C  K  I  V  D  K  S  *  N  R  K  E  Q  G  V  C  F  P  P  V  C  F  C  C  *  C  K  E  G  C  R  K  I  F  Q  S  *   : D  I  W  E  A  M  S  C  I  P  C  *  G  *  *  H  N  I  P  G  *  Y  *  Q  E  M  E  D  *  R   : C  D  *  S  T  E  E  G  W  N  *  K  Y  R  *  G  H  S  Y  G  *  S  *  Q  H  R  A  E  S  R  L  C  I  C  *  T  *  N  K  *  R  S  S  D  C  F  Q  *  T  P  K  E  G  C  F  W  E  T  H  E  R  K  S  C  M  G  T  A  F  N  *  A  K  *  R  R  T  A  K   : G  *  I  S  L  C  *  I  F  T  F  L  M  D  *  R  K  S  A  R  L  L  W  Q  I  W  *  N  *  E  C  C  S  C  K  R  S  S  F  L  K  E  K  R  F  C  L  C  Q  L  Y  K  P  R  V  C  S  C  V  H  *  R  I  Q  S  *  T  S  *  *  K  R  I  Q   : G  K  H  *  G  I  S  C  *  T  H  A  K  E  *  A  N  *  T  C  N  P  S  Y  *  K  G  T  S  G  E  E  E  N  T  G  P  F :   H  L  E  E  A  *  T  Q  Q  K  G  K  L  H  E  K  I  *  *  G  S  Q  S  *  R  I  F  F  Y  N  Q  *  T  S  A  P  L  E  T  T  R  A  S  S  S  A  P  F  R  F  E  H  G :   Y  W  :  V  L  T  I  S  T  R  Y  L  E  A  S  D  R  F  Q  L  * :   Y  I  I  H  I  V  W  I  P  V  E  F  L  E  C  T  *  K  A  L  S  L  L  Q  T  E   : V  C  C  H  I  V  V  D  L  W  V  H  H  L  L  P  I  M  A  S  L  A  V  T  I  H  Q  :  V  Q  F  M  G  S  K  A  F  R  I  L  F  S :   L  M  T  T  T  L  M  V  E  I  V  A  Y  I  V  D  :  I  E  G  V  I  W  E  S  H  *  T  D  V  S  S  K  G  L  T  V  I  L  T  C  Y  F  D  S  V  K  L  F  V  K  F  I  G  M  F  S  *  V  D  S  C  S  R  G  F  V  T  S  S  L  H  I  W  V  T  T  P  G  P  R  S  F  L  Y  T  L  Q  I  L  A  F  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83286" stop="82705"/>
                    <exon start="82094" stop="82005"/>
                    <exon start="81928" stop="81692"/>
                    <exon start="81439" stop="81218"/>
                    <exon start="81131" stop="81020"/>
                    <exon start="78889" stop="78731"/>
                    <exon start="78059" stop="78053"/>
                    <exon start="77436" stop="77430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1413</number_coding_nucleotides>
                  <number_encoded_amino_acids>471</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAENEESKKHSLHPMEVEKAECVSEFGATENTLEACMLECKDSVVENDNMDSLETQIVVLDSEKNSLNVSTSDNVDSSKDQNLVQLGEEGYSQGREETKEAVDTSLRLNEGILLSGEMEALERKKRRRTEIFIGGLGKESKEEDIRSIFGEVGEVVDVRLLINHETGKNKGFAFLRYASAADAKKAVERYSKVEISGKQCRVSLAEGNDTIYLGNIDKKWKTEDVIDLLKKAGIENIDKVTVMANPNNIEQNRGFAFVELETSKEAQIAFSKLQKKDAFGKHMNVKVAWAQPLIEPNEEELLKVKSVYAEYLPSSWIEEKVRDYFGKFGEIESVVLAKDLPSSRRKDFAFVNYISRESALACIEGFSHEPANESGSKVSIKVSLAKPMPKSKQTKRVTLPTRREPPEKKKIQDHSILKRHEPSRKVNYMRRYDEDHRVEGSSSTTNELLHLLRQQGPVRQLHSGLNMGTGY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78736" stop="78731"/>
                    <exon start="78059" stop="78053"/>
                    <exon start="77436" stop="77384"/>
                    <exon start="77273" stop="77194"/>
                    <exon start="77077" stop="76998"/>
                    <exon start="76885" stop="76845"/>
                    <exon start="75869" stop="75821"/>
                    <exon start="74958" stop="74954"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TWVLGINHQYSLSGSKRPFSAVVHNPHRMDSSGVSRVHLESSFPTANRSMLPHSRGPLGTPSFAYYGQLGSDHSPGSVYGVQSFPNSFQSHDHDPYGGNRSIYRRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="78420" e_stop="78205"/>
            <exon e_start="78123" e_stop="77656"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.912"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="78420" e_stop="78205" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78204" i_stop="78124" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="78123" e_stop="77656" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78420" stop="78205"/>
              <exon start="78123" stop="77656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453499" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78420" stop="78205"/>
              <exon start="78123" stop="77686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAG : GGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAG</gDNA_template>
            <first_frame> E  R  S  H  E  Q  G  I  L  F  L  S  R  T  P  R  L  E  D  V  S  I  Q  Y  Y  V  G  H  E  V  Y  Y  A  F  I  P  S  L  I  Y  S  S  E  I  A  L  V  M  S  V  N  M  S  F  S  S  *  R  Y  F  G  E  E  G  Q  M  L  L  *  L  L  *  :  G  P  V  C  V  Y  L  R  *  Y  S  I  L  C  L  L  P  S  A  N  T  G  T  G  *  L  C  P  P  T  L  A  I  W  K  E  I  S  Q  H  F  L  L  V  L  G  F  E  F  *  S  P  M  V  F  P  T  S  L  A  H  W  V  L  K  N  G  L  *  N  L  S  F  L  L  K  Q  K  K  E  S  R  S  L  K  V  T  I  S  A  *  Q  C  Y  Q  K  Q  K  A  Q  R  S  S  K  V  C  W  V  V  G  F  S  E  K  G  A  K  G  E  K  N  I  N  I  Y  V  *  F  K  N  N  I  T  Q  L  E  L  G  V  T  K  G  T  K  Y  E  R  T  M  V  Q  P  W  V  W  E </first_frame>
            <second_frame>  N  D  L  M  N  K  E  F  Y  S  *  V  E  P  L  G  W  K  M  C  P  S  N  I  M  L  D  M  K  F  I  M  L  L  S  P  L  L  F  I  R  Q  R  L  L  *  *  C  R  L  I  C  P  S  V  V  K  G  I  L  V  K  R  V  K  C  F  F  S  Y  S  R :   G  R  F  A  C  T  Y  A  S  I  L  S  Y  A  C  Y  L  L  P  T  Q  V  L  G  N  F  V  H  Q  H  L  L  Y  G  K  R  S  P  S  I  F  Y  W  C  L  D  L  S  F  D  L  P  W  F  F  L  L  H  W  P  I  G  S  *  K  M  D  F  R  T  S  V  F  F  *  N  K  R  K  K  A  G  A  *  K  *  R  L  V  P  S  S  V  I  K  S  K  K  R  K  E  V  L  R  S  V  G  L  W  A  L  V  K  K  A  Q  R  E  K  K  I  *  I  Y  M  F  S  S  R  I  I  L  P  S  W  S  W  E  S  P  R  E  Q  N  M  K  E  P  W  C  N  R  G  Y  G   </second_frame>
            <third_frame>   T  I  S  *  T  R  N  F  I  P  K  *  N  P  *  A  G  R  C  V  H  P  I  L  C  W  T  *  S  L  L  C  F  Y  P  L  S  Y  L  F  V  R  D  C  F  S  D  V  G  *  Y  V  L  Q  *  L  K  V  F  W  *  R  G  S  N  A  S  L  V  T  L   : G  A  G  L  R  V  P  T  L  V  F  Y  L  M  L  A  T  F  C  Q  H  R  Y  W  V  T  L  S  T  N  T  C  Y  M  E  R  D  L  P  A  F  S  I  G  A  W  I  *  V  L  I  S  H  G  F  S  Y  F  I  G  P  L  G  P  K  K  W  T  L  E  P  Q  F  S  F  K  T  K  E  R  K  Q  E  L  E  S  N  D  *  C  L  A  V  L  S  K  A  K  S  A  K  K  F  *  G  L  L  G  C  G  L  *  *  K  R  R  K  G  R  K  K  Y  K  Y  I  C  L  V  Q  E  *  Y  Y  P  V  G  V  G  S  H  Q  G  N  K  I  *  K  N  H  G  A  T  V  G  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78278" stop="78205"/>
                    <exon start="78123" stop="77931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRLICPSVVKGILVKRVKCFFSYSRGRFACTYASILSYACYLLPTQVLGNFVHQHLLYGKRSPSIFYWCLDLSFDLPWFFLLHWPIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="78153" e_stop="77538"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.930">
            <gDNA_exon_boundary e_start="78153" e_stop="77538" e_length="616"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78153" stop="77538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455250" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCC</gDNA_template>
            <first_frame> N  E  A  L  F  I  K  G  L  F  G  P  V  C  V  Y  L  R  *  Y  S  I  L  C  L  L  P  S  A  N  T  G  T  G  *  L  C  P  P  T  L  A  I  W  K  E  I  S  Q  H  F  L  L  V  L  G  F  E  F  *  S  P  M  V  F  P  T  S  L  A  H  W  V  L  K  N  G  L  *  N  L  S  F  L  L  K  Q  K  K  E  S  R  S  L  K  V  T  I  S  A  *  Q  C  Y  Q  K  Q  K  A  Q  R  S  S  K  V  C  W  V  V  G  F  S  E  K  G  A  K  G  E  K  N  I  N  I  Y  V  *  F  K  N  N  I  T  Q  L  E  L  G  V  T  K  G  T  K  Y  E  R  T  M  V  Q  P  W  V  W  E  F  G  G  S  V  T  W  *  G  K  R  D  K  R  S  I  Y  L  L  *  F  L  C  F  L  L  C  C  I  C  F  M  F  L  M  V  I  H  C  </first_frame>
            <second_frame>  M  R  P  F  L  L  R  G  Y  S  G  R  F  A  C  T  Y  A  S  I  L  S  Y  A  C  Y  L  L  P  T  Q  V  L  G  N  F  V  H  Q  H  L  L  Y  G  K  R  S  P  S  I  F  Y  W  C  L  D  L  S  F  D  L  P  W  F  F  L  L  H  W  P  I  G  S  *  K  M  D  F  R  T  S  V  F  F  *  N  K  R  K  K  A  G  A  *  K  *  R  L  V  P  S  S  V  I  K  S  K  K  R  K  E  V  L  R  S  V  G  L  W  A  L  V  K  K  A  Q  R  E  K  K  I  *  I  Y  M  F  S  S  R  I  I  L  P  S  W  S  W  E  S  P  R  E  Q  N  M  K  E  P  W  C  N  R  G  Y  G  S  L  G  V  L  *  P  G  K  E  K  E  I  R  G  V  F  T  F  Y  S  S  Y  A  F  Y  F  V  V  Y  V  L  C  F  *  W  L  F  I  A </second_frame>
            <third_frame>   *  G  P  F  Y  *  G  V  I  R  A  G  L  R  V  P  T  L  V  F  Y  L  M  L  A  T  F  C  Q  H  R  Y  W  V  T  L  S  T  N  T  C  Y  M  E  R  D  L  P  A  F  S  I  G  A  W  I  *  V  L  I  S  H  G  F  S  Y  F  I  G  P  L  G  P  K  K  W  T  L  E  P  Q  F  S  F  K  T  K  E  R  K  Q  E  L  E  S  N  D  *  C  L  A  V  L  S  K  A  K  S  A  K  K  F  *  G  L  L  G  C  G  L  *  *  K  R  R  K  G  R  K  K  Y  K  Y  I  C  L  V  Q  E  *  Y  Y  P  V  G  V  G  S  H  Q  G  N  K  I  *  K  N  H  G  A  T  V  G  M  G  V  W  G  F  C  N  L  V  R  K  K  R  *  E  E  Y  L  P  F  I  V  L  M  L  S  T  L  L  Y  M  F  Y  V  F  N  G  Y  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78152" stop="77931"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MRPFLLRGYSGRFACTYASILSYACYLLPTQVLGNFVHQHLLYGKRSPSIFYWCLDLSFDLPWFFLLHWPIGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="83408" PGL_stop="84121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83408" e_stop="84121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.945">
            <gDNA_exon_boundary e_start="83408" e_stop="84121" e_length="714"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83408" stop="84121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCCCTTTTCCTGGCAACAAGTTTGGGCACTTTCTTCTTCACAATCTTCTTGACAATCTTTACCGGACGAAGATTACCTTTTTCTGAATCAAGAACTGTGTTTCCTGTCTGGAGTGAACCTATATTGTCCTTGGCACCTTTATTTTCTGAAATGGGAAGCTGTAATTTACCTTCGTTTACACTAACCTCAGAGTCCATCATTCTATCCTTTCCTAAGATACCCTCAGCAGCAATAGTACCTTTCCCAACTTCTACTGGATGAAATGTGCCCTTCTCAAAGTCACCACCCTCACTAACTGCAGCAGCATTACAAGGCTCTACATATACAGTTTCTAGTTCAATTGTGCCTCGAGAGTTAGCTTTTTTAACATCTAATGAATCCAAAACAGTTTCTGCGTCAGCAATTTCCCTGCCTTTTTCTGATTCCTCAGTCTTTCTACTGTTCTTTGCAACGGATTTGGGCACTTTCTTCTTTACAATCTTCTTGACAATCTTTACTGAACGGAGATTACCTTTTTCTGAATCAACAACTACATTTCCTGTCTCAGGGGAACCTAGATTGTCCTTTGCATCATTACATCCCAAAATTGGAAGCTCCAACTTATCTTTAGCTACAGTAACCTCACAGTCCTTCATTCCATCCTTTCCTAGCATAACCTCAACAGCAATAATACCTTCCTCAACTTCTTTTGGCTGAAAATTGTCCTTC</gDNA_template>
            <first_frame> F  F  S  L  F  L  A  T  S  L  G  T  F  F  F  T  I  F  L  T  I  F  T  G  R  R  L  P  F  S  E  S  R  T  V  F  P  V  W  S  E  P  I  L  S  L  A  P  L  F  S  E  M  G  S  C  N  L  P  S  F  T  L  T  S  E  S  I  I  L  S  F  P  K  I  P  S  A  A  I  V  P  F  P  T  S  T  G  *  N  V  P  F  S  K  S  P  P  S  L  T  A  A  A  L  Q  G  S  T  Y  T  V  S  S  S  I  V  P  R  E  L  A  F  L  T  S  N  E  S  K  T  V  S  A  S  A  I  S  L  P  F  S  D  S  S  V  F  L  L  F  F  A  T  D  L  G  T  F  F  F  T  I  F  L  T  I  F  T  E  R  R  L  P  F  S  E  S  T  T  T  F  P  V  S  G  E  P  R  L  S  F  A  S  L  H  P  K  I  G  S  S  N  L  S  L  A  T  V  T  S  Q  S  F  I  P  S  F  P  S  I  T  S  T  A  I  I  P  S  S  T  S  F  G  *  K  L  S  F </first_frame>
            <second_frame>  F  F  P  F  S  W  Q  Q  V  W  A  L  S  S  S  Q  S  S  *  Q  S  L  P  D  E  D  Y  L  F  L  N  Q  E  L  C  F  L  S  G  V  N  L  Y  C  P  W  H  L  Y  F  L  K  W  E  A  V  I  Y  L  R  L  H  *  P  Q  S  P  S  F  Y  P  F  L  R  Y  P  Q  Q  Q  *  Y  L  S  Q  L  L  L  D  E  M  C  P  S  Q  S  H  H  P  H  *  L  Q  Q  H  Y  K  A  L  H  I  Q  F  L  V  Q  L  C  L  E  S  *  L  F  *  H  L  M  N  P  K  Q  F  L  R  Q  Q  F  P  C  L  F  L  I  P  Q  S  F  Y  C  S  L  Q  R  I  W  A  L  S  S  L  Q  S  S  *  Q  S  L  L  N  G  D  Y  L  F  L  N  Q  Q  L  H  F  L  S  Q  G  N  L  D  C  P  L  H  H  Y  I  P  K  L  E  A  P  T  Y  L  *  L  Q  *  P  H  S  P  S  F  H  P  F  L  A  *  P  Q  Q  Q  *  Y  L  P  Q  L  L  L  A  E  N  C  P   </second_frame>
            <third_frame>   F  F  P  F  P  G  N  K  F  G  H  F  L  L  H  N  L  L  D  N  L  Y  R  T  K  I  T  F  F  *  I  K  N  C  V  S  C  L  E  *  T  Y  I  V  L  G  T  F  I  F  *  N  G  K  L  *  F  T  F  V  Y  T  N  L  R  V  H  H  S  I  L  S  *  D  T  L  S  S  N  S  T  F  P  N  F  Y  W  M  K  C  A  L  L  K  V  T  T  L  T  N  C  S  S  I  T  R  L  Y  I  Y  S  F  *  F  N  C  A  S  R  V  S  F  F  N  I  *  *  I  Q  N  S  F  C  V  S  N  F  P  A  F  F  *  F  L  S  L  S  T  V  L  C  N  G  F  G  H  F  L  L  Y  N  L  L  D  N  L  Y  *  T  E  I  T  F  F  *  I  N  N  Y  I  S  C  L  R  G  T  *  I  V  L  C  I  I  T  S  Q  N  W  K  L  Q  L  I  F  S  Y  S  N  L  T  V  L  H  S  I  L  S  *  H  N  L  N  S  N  N  T  F  L  N  F  F  W  L  K  I  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83675" stop="84109"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NVPFSKSPPSLTAAALQGSTYTVSSSIVPRELAFLTSNESKTVSASAISLPFSDSSVFLLFFATDLGTFFFTIFLTIFTERRLPFSESTTTFPVSGEPRLSFASLHPKIGSSNLSLATVTSQSFIPSFPSITSTAIIPSSTSFG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83408" stop="83674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLFLATSLGTFFFTIFLTIFTGRRLPFSESRTVFPVWSEPILSLAPLFSEMGSCNLPSFTLTSESIILSFPKIPSAAIVPFPTSTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="84529" PGL_stop="83859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84529" e_stop="83859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="84529" e_stop="83859" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84529" stop="83859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84529" stop="83933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E425037" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTCTACAAATTCTAAAATCAGTGAGCATCCGGAGCAATCTCTGAGCATCCAAGTTCCAGAAACAAACACTGGGGAAACCGGAGTTGAGTTGAATGAAGCTGACCAAGGCACGCCGCCAAAAACAGTGGAAATTAAAGCTGTTGGGGAGCAGAAAGTAGGGCAGAGTGGTAAGAAAAAAGTGGTGAAAAAGACGGTAAAGATTGTTAAGAAGATTATCAAGAGGAAAGTGCCCAAATCTGTTGCAAAGAACAGCAAAATGACGGACGAATCAGAAGAAGGCCACGCAGAAACTGTTTTGGATTCACTCGATGTTGAGAAAGCTAGCTCTCGAGGCACAATTGAACCAGAAACTGTATGTTTAGAGGTTAGTAGTGCTGCTACAGTTGGTGAGGGTGGTAACTCGGAGAAGGACAATTTTCAGCCAAAAGAAGTTGAGGAAGGTATTATTGCTGTTGAGGTTATGCTAGGAAAGGATGGAATGAAGGACTGTGAGGTTACTGTAGCTAAAGATAAGTTGGAGCTTCCAATTTTGGGATGTAATGATGCAAAGGACAATCTAGGTTCCCCTGAGACAGGAAATGTAGTTGTTGATTCAGAAAAAGGTAATCTCCGTTCAGTAAAGATTGTCAAGAAGATTGTAAAGAAGAAAGTGCCCAAATCCGTTGCAA</gDNA_template>
            <first_frame> L  L  Y  K  F  *  N  Q  *  A  S  G  A  I  S  E  H  P  S  S  R  N  K  H  W  G  N  R  S  *  V  E  *  S  *  P  R  H  A  A  K  N  S  G  N  *  S  C  W  G  A  E  S  R  A  E  W  *  E  K  S  G  E  K  D  G  K  D  C  *  E  D  Y  Q  E  E  S  A  Q  I  C  C  K  E  Q  Q  N  D  G  R  I  R  R  R  P  R  R  N  C  F  G  F  T  R  C  *  E  S  *  L  S  R  H  N  *  T  R  N  C  M  F  R  G  *  *  C  C  Y  S  W  *  G  W  *  L  G  E  G  Q  F  S  A  K  R  S  *  G  R  Y  Y  C  C  *  G  Y  A  R  K  G  W  N  E  G  L  *  G  Y  C  S  *  R  *  V  G  A  S  N  F  G  M  *  *  C  K  G  Q  S  R  F  P  *  D  R  K  C  S  C  *  F  R  K  R  *  S  P  F  S  K  D  C  Q  E  D  C  K  E  E  S  A  Q  I  R  C   </first_frame>
            <second_frame>  Y  S  T  N  S  K  I  S  E  H  P  E  Q  S  L  S  I  Q  V  P  E  T  N  T  G  E  T  G  V  E  L  N  E  A  D  Q  G  T  P  P  K  T  V  E  I  K  A  V  G  E  Q  K  V  G  Q  S  G  K  K  K  V  V  K  K  T  V  K  I  V  K  K  I  I  K  R  K  V  P  K  S  V  A  K  N  S  K  M  T  D  E  S  E  E  G  H  A  E  T  V  L  D  S  L  D  V  E  K  A  S  S  R  G  T  I  E  P  E  T  V  C  L  E  V  S  S  A  A  T  V  G  E  G  G  N  S  E  K  D  N  F  Q  P  K  E  V  E  E  G  I  I  A  V  E  V  M  L  G  K  D  G  M  K  D  C  E  V  T  V  A  K  D  K  L  E  L  P  I  L  G  C  N  D  A  K  D  N  L  G  S  P  E  T  G  N  V  V  V  D  S  E  K  G  N  L  R  S  V  K  I  V  K  K  I  V  K  K  K  V  P  K  S  V  A  </second_frame>
            <third_frame>   T  L  Q  I  L  K  S  V  S  I  R  S  N  L  *  A  S  K  F  Q  K  Q  T  L  G  K  P  E  L  S  *  M  K  L  T  K  A  R  R  Q  K  Q  W  K  L  K  L  L  G  S  R  K  *  G  R  V  V  R  K  K  W  *  K  R  R  *  R  L  L  R  R  L  S  R  G  K  C  P  N  L  L  Q  R  T  A  K  *  R  T  N  Q  K  K  A  T  Q  K  L  F  W  I  H  S  M  L  R  K  L  A  L  E  A  Q  L  N  Q  K  L  Y  V  *  R  L  V  V  L  L  Q  L  V  R  V  V  T  R  R  R  T  I  F  S  Q  K  K  L  R  K  V  L  L  L  L  R  L  C  *  E  R  M  E  *  R  T  V  R  L  L  *  L  K  I  S  W  S  F  Q  F  W  D  V  M  M  Q  R  T  I  *  V  P  L  R  Q  E  M  *  L  L  I  Q  K  K  V  I  S  V  Q  *  R  L  S  R  R  L  *  R  R  K  C  P  N  P  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84528" stop="83860"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSTNSKISEHPEQSLSIQVPETNTGETGVELNEADQGTPPKTVEIKAVGEQKVGQSGKKKVVKKTVKIVKKIIKRKVPKSVAKNSKMTDESEEGHAETVLDSLDVEKASSRGTIEPETVCLEVSSAATVGEGGNSEKDNFQPKEVEEGIIAVEVMLGKDGMKDCEVTVAKDKLELPILGCNDAKDNLGSPETGNVVVDSEKGNLRSVKIVKKIVKKKVPKSVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="89557" PGL_stop="94662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89557" e_stop="89646"/>
            <exon e_start="89722" e_stop="89828"/>
            <exon e_start="89912" e_stop="89987"/>
            <exon e_start="90872" e_stop="90943"/>
            <exon e_start="91068" e_stop="91130"/>
            <exon e_start="91898" e_stop="92250"/>
            <exon e_start="93494" e_stop="93617"/>
            <exon e_start="94196" e_stop="94662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89557" e_stop="89646" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89722" e_stop="89828" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89912" e_stop="89987" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90872" e_stop="90943" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91068" e_stop="91130" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91898" e_stop="92250" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93494" e_stop="93617" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94196" e_stop="94662" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89557" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89564" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89564" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276159" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89569" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="91939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334658" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89592" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89595" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89595" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89618" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89622" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89622" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554093" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89622" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423821" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89626" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89626" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89626" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560625" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91985" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92089" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92089" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92098" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94215" stop="94555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</gDNA_template>
            <first_frame> S  A  V  T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I  Q  H  I  F  H  S  *  I  S  L  F  I  L  I  I  S  C  C  W  S  I  Y  E   </first_frame>
            <second_frame>  Q  L  S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  S  I  Y  S  T  L  R  *  V  Y  S  Y  *  S  F  H  V  V  G  Q  F  T  K  </second_frame>
            <third_frame>   S  C  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P  A  Y  I  P  L  L  D  K  F  I  H  I  N  H  F  M  L  L  V  N  L  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89617" stop="89646"/>
                    <exon start="89722" stop="89828"/>
                    <exon start="89912" stop="89987"/>
                    <exon start="90872" stop="90943"/>
                    <exon start="91068" stop="91130"/>
                    <exon start="91898" stop="92250"/>
                    <exon start="93494" stop="93617"/>
                    <exon start="94196" stop="94216"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94302" stop="94502"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="89564" e_stop="89646"/>
            <exon e_start="89722" e_stop="89828"/>
            <exon e_start="89912" e_stop="89987"/>
            <exon e_start="90872" e_stop="90943"/>
            <exon e_start="91050" e_stop="91130"/>
            <exon e_start="91898" e_stop="92250"/>
            <exon e_start="93494" e_stop="93617"/>
            <exon e_start="94196" e_stop="94662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="0.985"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="89564" e_stop="89646" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89722" e_stop="89828" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89912" e_stop="89987" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90872" e_stop="90943" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.000">
            <gDNA_intron_boundary i_start="90944" i_stop="91049" i_length="106"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91050" e_stop="91130" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="91898" e_stop="92250" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93494" e_stop="93617" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94196" e_stop="94662" e_length="467"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89564" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89581" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91050" stop="91130"/>
              <exon start="91898" stop="92045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89595" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91985" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427117" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92039" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92089" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369391" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92089" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92098" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94196" stop="94555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94215" stop="94555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : TCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAAAA</gDNA_template>
            <first_frame> S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   L  L  I  A  S  R  K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  S  I  Y  S  T  L  R  *  V  Y  S  Y  *  S  F  H  V  V  G  Q  F  T  K  </first_frame>
            <second_frame>  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : V  Y  S  L  L  P  G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P  A  Y  I  P  L  L  D  K  F  I  H  I  N  H  F  M  L  L  V  N  L  R  K </second_frame>
            <third_frame>   T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  S  T  H  C  F  Q  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I  Q  H  I  F  H  S  *  I  S  L  F  I  L  I  I  S  C  C  W  S  I  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89617" stop="89646"/>
                    <exon start="89722" stop="89828"/>
                    <exon start="89912" stop="89987"/>
                    <exon start="90872" stop="90943"/>
                    <exon start="91050" stop="91130"/>
                    <exon start="91898" stop="92250"/>
                    <exon start="93494" stop="93617"/>
                    <exon start="94196" stop="94216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETRSTHCFQEVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94302" stop="94502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="89564" e_stop="89646"/>
            <exon e_start="89722" e_stop="89828"/>
            <exon e_start="89912" e_stop="89987"/>
            <exon e_start="90872" e_stop="90943"/>
            <exon e_start="91068" e_stop="91470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.928"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="0.944"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="89564" e_stop="89646" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89722" e_stop="89828" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89912" e_stop="89987" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="0.944">
            <gDNA_exon_boundary e_start="90872" e_stop="90943" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="0.891">
            <gDNA_exon_boundary e_start="91068" e_stop="91470" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89564" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281348" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89595" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281521" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89623" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89623" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89747" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTG</gDNA_template>
            <first_frame> S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R  *  Y  S  N  P  S  L  S  P  I  L  C  D  T  F  R  I  S  K  F  K  Q  V  Y  L  *  P  *  I  F  H  R  S  F  K  H  F  K  L  S  I  V  V  T  Y  S  T  F  Y  V  V  Y  K  Y  I  N  S  F  K  R  I  K  D  S  M  R  K  F  S  V  K  L  K  L  L  D  S  W  K  T  K  S  A  T  *  I  G  T  K  G  V  N  Q  I  G  G  *  F  F  L  Q  V  I  K  K  L  G  I  F  F  Y  F  L </first_frame>
            <second_frame>  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *  G  N  I  V  I  P  P  S  L  P  F  Y  V  T  L  F  G  F  R  N  S  N  K  S  I  F  D  R  K  F  F  I  D  L  L  N  I  L  N  Y  Q  L  W  *  L  I  V  L  F  M  *  F  T  N  I  *  I  H  S  K  E  L  K  I  P  C  A  N  F  R  S  N  L  N  Y  L  T  L  G  K  R  K  V  P  H  K  L  G  Q  R  E  *  I  K  L  V  D  N  S  S  F  K  L  L  K  S  W  A  S  F  F  I  F   </second_frame>
            <third_frame>   T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  V  I  *  *  S  L  P  L  S  H  F  M  *  H  F  S  D  F  E  I  Q  T  S  L  S  L  T  V  N  F  S  *  I  F  *  T  F  *  I  I  N  C  G  D  L  *  Y  F  L  C  S  L  Q  I  Y  K  F  I  Q  K  N  *  R  F  H  A  Q  I  F  G  Q  T  *  T  T  *  L  L  E  N  E  K  C  H  I  N  W  D  K  G  S  K  S  N  W  W  I  I  L  P  S  S  Y  *  K  V  G  H  L  F  L  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89617" stop="89646"/>
                    <exon start="89722" stop="89828"/>
                    <exon start="89912" stop="89987"/>
                    <exon start="90872" stop="90943"/>
                    <exon start="91068" stop="91139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="99244" PGL_stop="99483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99244" e_stop="99483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="99244" e_stop="99483" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99244" stop="99483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99244" stop="99483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99245" stop="99483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</gDNA_template>
            <first_frame> V  S  F  N  L  Q  C  L  L  L  C  I  K  N  A  F  S  A  E  V  M  C  D  S  K  S  N  A  I  L  L  T  F  W  C  S  H  N  I  R  S  V  P  S  F  H  L  I  R  L  F  *  C  V  L  H  S  Y  L  *  *  N  L  M  Y  I  T  F  F  S  L  V  K  I  T  L  H  *  *  V </first_frame>
            <second_frame>  F  L  S  I  F  S  A  Y  C  F  A  *  K  M  H  F  L  Q  K  *  C  V  I  P  S  P  M  L  F  F  L  P  F  G  V  V  T  I  S  V  L  Y  P  R  F  T  *  L  D  Y  F  D  V  Y  Y  I  H  I  F  D  E  I  *  C  T  L  H  F  F  L  L  L  K  L  H  Y  I  N  E   </second_frame>
            <third_frame>   F  F  Q  S  S  V  P  T  A  L  H  K  K  C  I  F  C  R  S  N  V  *  F  Q  V  Q  C  Y  S  S  Y  L  L  V  *  S  Q  Y  P  F  C  T  L  V  S  P  N  *  I  I  L  M  C  T  T  F  I  S  L  M  K  F  D  V  H  Y  I  F  F  S  C  *  N  Y  I  T  L  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="99850" PGL_stop="100714"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99850" e_stop="99877"/>
            <exon e_start="100053" e_stop="100714"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.840" acc_prob="0.000" e_score="0.500"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.500">
            <gDNA_exon_boundary e_start="99850" e_stop="99877" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.840" acc_prob="0.000">
            <gDNA_intron_boundary i_start="99878" i_stop="100052" i_length="175"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="100053" e_stop="100714" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99850" stop="99877"/>
              <exon start="100053" stop="100714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375001" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACATCTTTTTCATATAATTTTTAAAAG : GAGAAAATGTAACTGTTTTATCAAGAAACTTATACAAACACGTCAAATTCAGGGCTGCAAGGGGTAAAGATGATAACCATATGAAGGAGTTATACATGCTTTTGTTCACTGTATACTTTCTTTTGAATTTTTACTTCTCTGAATCTCCATCCACTAAATTAATTTGAGGATGACTAAGAGATAGGCTAAGAATTGTACGTGGTTTTTGCACTGGGACAAGAATCATCACAACAGATATCTAACAACTACAGCAAAAAGTGTAATTTACAGACCGAGCCTCTTGGGTCGTAAATAAGTAGTTGAGCCTTTCTTCAACCCAGGCATAGAAACCTGTTGCAGTTCTTTTGCTCTCTTTTCCTTCTCCTTCTCCTTGTTTCGTCTGTCAGCTTCAGCCTGTACTTTACGCAACTTCTCCATTTCTTCCTCCATGGCAGTTTTCTCCTCTTTCTGTTTCTTTTTATGTTCCAGCATTGATGTATCAGAATCTTTCACGGAGAAAAACATGGGCCCCAGTTCAGCCAACCAGTGAGGCTCCACAGCTGTCACACACTGCATGTACTCCTTTGATGTCAAGATAAGCTCATGATAAACCACGTTATCAGGAGTGTAACCCAATCCATAGAGAGCACTAGTGGGATGAAGGTGGCAAGGCATTCCATTCC</gDNA_template>
            <first_frame> N  I  F  F  I  *  F  L  K   : G  E  N  V  T  V  L  S  R  N  L  Y  K  H  V  K  F  R  A  A  R  G  K  D  D  N  H  M  K  E  L  Y  M  L  L  F  T  V  Y  F  L  L  N  F  Y  F  S  E  S  P  S  T  K  L  I  *  G  *  L  R  D  R  L  R  I  V  R  G  F  C  T  G  T  R  I  I  T  T  D  I  *  Q  L  Q  Q  K  V  *  F  T  D  R  A  S  W  V  V  N  K  *  L  S  L  S  S  T  Q  A  *  K  P  V  A  V  L  L  L  S  F  P  S  P  S  P  C  F  V  C  Q  L  Q  P  V  L  Y  A  T  S  P  F  L  P  P  W  Q  F  S  P  L  S  V  S  F  Y  V  P  A  L  M  Y  Q  N  L  S  R  R  K  T  W  A  P  V  Q  P  T  S  E  A  P  Q  L  S  H  T  A  C  T  P  L  M  S  R  *  A  H  D  K  P  R  Y  Q  E  C  N  P  I  H  R  E  H  *  W  D  E  G  G  K  A  F  H  S </first_frame>
            <second_frame>  T  S  F  S  Y  N  F  *  K  :  E  K  M  *  L  F  Y  Q  E  T  Y  T  N  T  S  N  S  G  L  Q  G  V  K  M  I  T  I  *  R  S  Y  T  C  F  C  S  L  Y  T  F  F  *  I  F  T  S  L  N  L  H  P  L  N  *  F  E  D  D  *  E  I  G  *  E  L  Y  V  V  F  A  L  G  Q  E  S  S  Q  Q  I  S  N  N  Y  S  K  K  C  N  L  Q  T  E  P  L  G  S  *  I  S  S  *  A  F  L  Q  P  R  H  R  N  L  L  Q  F  F  C  S  L  F  L  L  L  L  L  V  S  S  V  S  F  S  L  Y  F  T  Q  L  L  H  F  F  L  H  G  S  F  L  L  F  L  F  L  F  M  F  Q  H  *  C  I  R  I  F  H  G  E  K  H  G  P  Q  F  S  Q  P  V  R  L  H  S  C  H  T  L  H  V  L  L  *  C  Q  D  K  L  M  I  N  H  V  I  R  S  V  T  Q  S  I  E  S  T  S  G  M  K  V  A  R  H  S  I   </second_frame>
            <third_frame>   H  L  F  H  I  I  F  K  R :   R  K  C  N  C  F  I  K  K  L  I  Q  T  R  Q  I  Q  G  C  K  G  *  R  *  *  P  Y  E  G  V  I  H  A  F  V  H  C  I  L  S  F  E  F  L  L  L  *  I  S  I  H  *  I  N  L  R  M  T  K  R  *  A  K  N  C  T  W  F  L  H  W  D  K  N  H  H  N  R  Y  L  T  T  T  A  K  S  V  I  Y  R  P  S  L  L  G  R  K  *  V  V  E  P  F  F  N  P  G  I  E  T  C  C  S  S  F  A  L  F  S  F  S  F  S  L  F  R  L  S  A  S  A  C  T  L  R  N  F  S  I  S  S  S  M  A  V  F  S  S  F  C  F  F  L  C  S  S  I  D  V  S  E  S  F  T  E  K  N  M  G  P  S  S  A  N  Q  *  G  S  T  A  V  T  H  C  M  Y  S  F  D  V  K  I  S  S  *  *  T  T  L  S  G  V  *  P  N  P  *  R  A  L  V  G  *  R  W  Q  G  I  P  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100379" stop="100630"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KPVAVLLLSFPSPSPCFVCQLQPVLYATSPFLPPWQFSPLSVSFYVPALMYQNLSRRKTWAPVQPTSEAPQLSHTACTPLMSR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="100348" stop="100581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVEPFFNPGIETCCSSFALFSFSFSLFRLSASACTLRNFSISSSMAVFSSFCFFLCSSIDVSESFTEKNMGPSSANQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="101524" PGL_stop="100197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101524" e_stop="100197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="101524" e_stop="100197" e_length="1328"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101524" stop="100737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739475" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101356" stop="100950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101023" stop="100230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100933" stop="100434"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100915" stop="100436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100842" stop="100431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100836" stop="100341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100482" stop="100207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615857" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAG</gDNA_template>
            <first_frame> A  M  V  K  *  R  C  T  I  L  V  W  V  W  M  L  C  K  C  S  L  L  V  E  L  Q  L  T  S  V  L  V  E  L  V  E  L  A  Q  E  L  V  T  G  F  I  L  R  M  R  M  R  M  K  C  C  K  V  P  C  Q  R  F  N  G  Q  I  L  G  M  W  F  C  C  S  S  L  S  K  F  R  T  C  W  I  L  I  L  W  T  H  L  L  R  I  T  S  L  T  P  C  I  S  C  G  Y  *  V  H  L  T  M  L  G  I  *  Q  A  L  A  G  K  W  W  S  S  H  W  I  L  P  L  P  K  C  S  *  W  E  N  N  *  N  V  *  M  R  F  *  L  L  F  L  C  F  Q  C  L  L  F  S  L  D  P  R  I  G  L  R  K  V  M  L  L  G  K  S  F  L  C  Q  N  L  I  T  L  H  C  L  M  F  T  S  N  G  K  L  I  N  T  E  G  T  G  V  M  T  T  I  Y  R  S  K  V  Y  A  R  L  G  K  *  G  L  N  C  W  I  S  S  R  H  L  K  F  H  S  L  P  V  V  L  I  G  M  L  *  G  K  P  S  A  L  R  T  S  I  M  Q  L  G  *  K  E  L  G  N  M  L  I  A  G  M  E  C  L  A  T  F  I  P  L  V  L  S  M  D  W  V  T  L  L  I  T  W  F  I  M  S  L  S  *  H  Q  R  S  T  C  S  V  *  Q  L  W  S  L  T  G  W  L  N  W  G  P  C  F  S  P  *  K  I  L  I  H  Q  C  W  N  I  K  R  N  R  K  R  R  K  L  P  W  R  K  K  W  R  S  C  V  K  Y  R  L  K  L  T  D  E  T  R  R  R  R  R  K  R  E  Q  K  N  C  N  R  F  L  C  L  G  *  R  K  A  Q  L  L  I  Y  D  P  R  G  S  V  C  K  L  H  F  L  L  *  L  L  D  I  C  C  D  D  S  C  P  S  A  K  T  T  Y  N  S  *  P  I  S  *  S  S  S  N  *  F  S  G  W   </first_frame>
            <second_frame>  L  W  *  N  E  G  V  Q  S  S  Y  G  Y  G  C  S  A  S  V  P  Y  *  S  S  C  S  *  P  A  C  W  S  S  W  *  N  W  P  R  N  L  L  P  A  L  Y  *  E  C  V  *  E  *  N  A  A  K  S  R  A  R  D  S  T  D  K  S  W  E  C  G  F  A  A  Q  V  S  Q  N  S  E  P  V  G  F  *  F  Y  G  P  T  S  S  G  *  H  P  *  L  H  V  S  V  V  G  I  R  C  T  *  Q  C  W  G  F  N  K  P  W  L  E  N  G  G  V  P  I  G  S  S  P  C  Q  N  A  L  D  G  R  T  T  R  M  F  K  *  G  S  D  Y  C  F  Y  A  F  S  A  F  C  F  L  *  T  Q  G  *  G  *  G  K  *  C  C  *  G  K  V  F  C  A  R  I  *  S  P  Y  T  A  *  C  L  P  A  M  E  S  *  S  I  Q  R  G  L  V  *  *  P  L  F  T  G  Q  R  F  T  Q  G  *  G  S  K  V  S  I  A  G  Y  P  Q  D  T  *  N  S  T  H  F  L  W  S  *  L  G  C  C  K  E  S  H  L  L  C  V  L  P  *  C  S  *  A  E  R  S  W  G  I  C  *  L  Q  E  W  N  A  L  P  P  S  S  H  *  C  S  L  W  I  G  L  H  S  *  *  R  G  L  S  *  A  Y  L  D  I  K  G  V  H  A  V  C  D  S  C  G  A  S  L  V  G  *  T  G  A  H  V  F  L  R  E  R  F  *  Y  I  N  A  G  T  *  K  E  T  E  R  G  E  N  C  H  G  G  R  N  G  E  V  A  *  S  T  G  *  S  *  Q  T  K  Q  G  E  G  E  G  K  E  S  K  R  T  A  T  G  F  Y  A  W  V  E  E  R  L  N  Y  L  F  T  T  Q  E  A  R  S  V  N  Y  T  F  C  C  S  C  *  I  S  V  V  M  I  L  V  P  V  Q  K  P  R  T  I  L  S  L  S  L  S  H  P  Q  I  N  L  V  D  G  </second_frame>
            <third_frame>   Y  G  K  M  K  V  Y  N  P  R  M  G  M  D  A  L  Q  V  F  P  I  S  R  A  A  A  D  Q  R  A  G  R  A  G  R  T  G  P  G  T  C  Y  R  L  Y  T  E  N  A  Y  E  N  E  M  L  Q  S  P  V  P  E  I  Q  R  T  N  L  G  N  V  V  L  L  L  K  S  L  K  I  Q  N  L  L  D  F  D  F  M  D  P  P  P  Q  D  N  I  L  N  S  M  Y  Q  L  W  V  L  G  A  L  N  N  V  G  D  L  T  S  L  G  W  K  M  V  E  F  P  L  D  P  P  L  A  K  M  L  L  M  G  E  Q  L  E  C  L  N  E  V  L  T  I  V  S  M  L  S  V  P  S  V  F  F  R  P  K  D  R  A  E  E  S  D  A  A  R  E  K  F  F  V  P  E  S  D  H  L  T  L  L  N  V  Y  Q  Q  W  K  A  N  Q  Y  R  G  D  W  C  N  D  H  Y  L  Q  V  K  G  L  R  K  A  R  E  V  R  S  Q  L  L  D  I  L  K  T  L  K  I  P  L  T  S  C  G  P  D  W  D  V  V  R  K  A  I  C  S  A  Y  F  H  N  A  A  R  L  K  G  V  G  E  Y  V  N  C  R  N  G  M  P  C  H  L  H  P  T  S  A  L  Y  G  L  G  Y  T  P  D  N  V  V  Y  H  E  L  I  L  T  S  K  E  Y  M  Q  C  V  T  A  V  E  P  H  W  L  A  E  L  G  P  M  F  F  S  V  K  D  S  D  T  S  M  L  E  H  K  K  K  Q  K  E  E  K  T  A  M  E  E  E  M  E  K  L  R  K  V  Q  A  E  A  D  R  R  N  K  E  K  E  K  E  K  R  A  K  E  L  Q  Q  V  S  M  P  G  L  K  K  G  S  T  T  Y  L  R  P  K  R  L  G  L  *  I  T  L  F  A  V  V  V  R  Y  L  L  *  *  F  L  S  Q  C  K  N  H  V  Q  F  L  A  Y  L  L  V  I  L  K  L  I  *  W  M  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101522" stop="100317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGKMKVYNPRMGMDALQVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKSLKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLLMGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHYLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRKVQAEADRRNKEKEKEKRAKELQQVSMPGLKKGSTTYLRPKRLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="106471" PGL_stop="102540"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106471" e_stop="106455"/>
            <exon e_start="106340" e_stop="106243"/>
            <exon e_start="106088" e_stop="105980"/>
            <exon e_start="104777" e_stop="104600"/>
            <exon e_start="104499" e_stop="104270"/>
            <exon e_start="104172" e_stop="103996"/>
            <exon e_start="102780" e_stop="102709"/>
            <exon e_start="102591" e_stop="102540"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.956" acc_prob="1.000" e_score="0.983"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.986"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106471" e_stop="106455" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106454" i_stop="106341" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106340" e_stop="106243" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106242" i_stop="106089" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106088" e_stop="105980" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.880" acc_prob="0.669">
            <gDNA_intron_boundary i_start="105979" i_stop="104778" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104777" e_stop="104600" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.796" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.983">
            <gDNA_exon_boundary e_start="104499" e_stop="104270" e_length="230"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="104269" i_stop="104173" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="0.983">
            <gDNA_exon_boundary e_start="104172" e_stop="103996" e_length="177"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="1.000">
            <gDNA_intron_boundary i_start="103995" i_stop="102781" i_length="1215"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="102780" e_stop="102709" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="102708" i_stop="102592" i_length="117"/>
          </intron>
          <exon e_serial="8" e_score="0.962">
            <gDNA_exon_boundary e_start="102591" e_stop="102540" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106471" stop="106455"/>
              <exon start="106340" stop="106243"/>
              <exon start="106088" stop="105980"/>
              <exon start="104777" stop="104600"/>
              <exon start="104499" stop="104351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330771" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106029" stop="105980"/>
              <exon start="104777" stop="104600"/>
              <exon start="104499" stop="104270"/>
              <exon start="104172" stop="103996"/>
              <exon start="102780" stop="102709"/>
              <exon start="102591" stop="102540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104777" stop="104600"/>
              <exon start="104499" stop="104349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E569746" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGTGCTCTGTCTGAG : GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG : GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG : GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG : ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATGCACAAGTCTCGACAAAGATTTTGGGAGCTGGCTGGTTCAAAACTCGGAGATATCCTTGGTGTTGAGAAGAGTGCAGAGCAG : GTTGATGCGGATACTGCTACAGTGGGCGAGGATGGAGAGGTTGATTTTAAAGGAGAAGCTAGATTCTCACAGCACTTAAAGAAAGGGGAAGCTGTCAGTGATTTTGCATTATCAAAAACACTTTCACAGCAAAGGCAGTATCTGCCCATCTTCTCTGTGCGAGATGATTTATTGCAG : GTGGTTCGCGAAAACCAGGTGGTGGTGGTTGTTGGAGAAACTGGTTCTGGAAAGACAACACAGCTAACTCAG : TACCTTCATGAAGATGGCTATACAAGTAACGGGATTGTTGGTTGCACCCAAC</gDNA_template>
            <first_frame> E  V  L  C  L  R :   T  E  E  M  I  Q  M  V  P  L  K  I  R  M  K  R  L  L  K  V  C  V  *  R  W  S  I  I  Q  I  V  P   : G  M  T  A  K  K  V  V  Q  C  L  K  G  M  V  H  Q  H  F  *  V  M  R  H  L  S  R  R  K  R  W  N  W  P  K  N  W :   F  V  E  M  E  A  R  C  H  L  L  K  V  K  G  Y  H  S  S  L  Q  T  M  L  N  G  R  T  A  S  F  *  D  L  E  L  L  E  V  P  R  C  R  R  S  L  M  M  R  M  N  G  R  L  F  F  L  F  T  :  I  Q  S  L  P  F  W  M  E  E  L  F  S  P  S  K  L  S  R  *  C  Q  *  R  T  Q  L  Q  I  W  P  *  F  H  V  K  A  Q  L  *  F  G  K  Y  V  K  N  K  T  C  T  S  L  D  K  D  F  G  S  W  L  V  Q  N  S  E  I  S  L  V  L  R  R  V  Q  S  R :   L  M  R  I  L  L  Q  W  A  R  M  E  R  L  I  L  K  E  K  L  D  S  H  S  T  *  R  K  G  K  L  S  V  I  L  H  Y  Q  K  H  F  H  S  K  G  S  I  C  P  S  S  L  C  E  M  I  Y  C  R :   W  F  A  K  T  R  W  W  W  L  L  E  K  L  V  L  E  R  Q  H  S  *  L  S :   T  F  M  K  M  A  I  Q  V  T  G  L  L  V  A  P  N </first_frame>
            <second_frame>  R  C  S  V  *   : G  R  R  R  *  Y  K  W  C  L  *  R  S  E  *  R  D  Y  *  K  Y  A  F  R  D  G  V  *  F  R  S  C  L  :  V  *  P  R  R  R  *  Y  S  V  *  R  G  W  F  I  S  I  S  R  *  *  G  I  F  P  E  E  R  G  G  I  G  Q  K  T   : G  S  *  R  W  K  Q  D  V  T  C  S  K  *  K  V  I  T  A  H  C  R  Q  C  S  M  G  G  P  P  A  F  E  I  W  S  C  *  R  Y  R  G  A  D  G  V  *  *  *  G  *  T  E  G  Y  S  S  C  S  R :   Y  K  A  S  L  F  G  W  K  N  C  F  H  Q  A  S  *  A  D  N  A  N  K  G  P  N  F  R  Y  G  H  N  F  T  *  R  L  S  S  S  S  G  N  T  *  K  T  K  H  A  Q  V  S  T  K  I  L  G  A  G  W  F  K  T  R  R  Y  P  W  C  *  E  E  C  R  A   : G  *  C  G  Y  C  Y  S  G  R  G  W  R  G  *  F  *  R  R  S  *  I  L  T  A  L  K  E  R  G  S  C  Q  *  F  C  I  I  K  N  T  F  T  A  K  A  V  S  A  H  L  L  C  A  R  *  F  I  A   : G  G  S  R  K  P  G  G  G  G  C  W  R  N  W  F  W  K  D  N  T  A  N  S   : V  P  S  *  R  W  L  Y  K  *  R  D  C  W  L  H  P   </second_frame>
            <third_frame>   G  A  L  S  E  :  D  G  G  D  D  T  N  G  A  S  E  D  Q  N  E  E  I  T  E  S  M  R  L  E  M  E  Y  N  S  D  R  A  W :   Y  D  R  E  E  G  S  T  V  F  E  G  D  G  S  S  A  F  L  G  D  E  A  S  F  Q  K  K  E  V  E  L  A  K  K  L  :  V  R  R  D  G  S  K  M  S  L  A  Q  S  K  R  L  S  Q  L  T  A  D  N  A  Q  W  E  D  R  Q  L  L  R  S  G  A  V  R  G  T  E  V  Q  T  E  F  D  D  E  D  E  R  K  V  I  L  L  V  H   : D  T  K  P  P  F  L  D  G  R  I  V  F  T  K  Q  A  E  P  I  M  P  I  K  D  P  T  S  D  M  A  I  I  S  R  K  G  S  A  L  V  R  E  I  R  E  K  Q  N  M  H  K  S  R  Q  R  F  W  E  L  A  G  S  K  L  G  D  I  L  G  V  E  K  S  A  E  Q  :  V  D  A  D  T  A  T  V  G  E  D  G  E  V  D  F  K  G  E  A  R  F  S  Q  H  L  K  K  G  E  A  V  S  D  F  A  L  S  K  T  L  S  Q  Q  R  Q  Y  L  P  I  F  S  V  R  D  D  L  L  Q  :  V  V  R  E  N  Q  V  V  V  V  V  G  E  T  G  S  G  K  T  T  Q  L  T  Q  :  Y  L  H  E  D  G  Y  T  S  N  G  I  V  G  C  T  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106469" stop="106455"/>
                    <exon start="106340" stop="106243"/>
                    <exon start="106088" stop="105980"/>
                    <exon start="104777" stop="104600"/>
                    <exon start="104499" stop="104270"/>
                    <exon start="104172" stop="103996"/>
                    <exon start="102780" stop="102709"/>
                    <exon start="102591" stop="102541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALSEDGGDDTNGASEDQNEEITESMRLEMEYNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAEPIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQVDADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYTSNGIVGCTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="113479" PGL_stop="114097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113479" e_stop="114097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="113479" e_stop="114097" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113479" stop="113845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113513" stop="113998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113569" stop="114097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATCAGTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</gDNA_template>
            <first_frame> L  I  S  *  E  R  *  H  I  D  I  G  E  W  *  F  K  K  W  D  L  G  G  E  V  K  Q  R  Q  M  L  *  L  R  K  D  H  S  T  A  S  L  L  M  K  F  G  I  N  W  G  I  V  G  N  H  S  I  A  *  T  L  T  S  L  L  K  L  Y  G  L  S  S  L  I  K  K  W  W  G  E  M  I  T  G  Q  C  S  K  G  L  L  S  I  I  H  R  A  L  Q  C  P  G  I  S  A  R  R  L  L  M  R  C  G  K  I  F  S  R  G  *  K  *  I  M  L  I  R  E  A  R  R  G  N  *  L  *  V  R  *  L  W  R  I  S  W  S  R  L  E  *  L  P  S  R  P  K  A  R  E  F  R  V  *  F  L  G  L  I  Q  C  H  *  H  S  K  L  S  G  R  T  I  K  S  P  Q  C  N  R  Y  Q  N  S  S  I  N  N  N  S  R  I  Y  H  Q  F  L  </first_frame>
            <second_frame>  *  S  V  E  N  V  D  T  L  I  L  V  N  G  N  S  R  N  G  I  S  G  G  R  *  S  K  G  K  C  F  S  Y  A  R  I  T  L  Q  P  H  S  *  *  S  S  E  S  I  G  E  L  W  E  T  T  Q  *  H  E  P  *  R  V  C  *  N  C  M  D  Y  R  V  *  S  R  S  G  G  G  K  *  L  R  A  S  A  A  R  G  F  S  A  S  S  I  E  H  Y  N  V  Q  G  S  Q  Q  E  D  C  *  *  G  V  A  R  Y  S  A  G  G  K  N  R  *  C  *  *  E  K  P  G  E  A  T  N  F  R  *  D  N  S  G  G  F  L  G  Q  G  W  S  D  C  R  V  D  P  R  Q  E  N  F  G  F  S  F  W  G  *  F  N  V  I  D  T  A  S  S  V  D  A  L  S  N  P  R  N  A  T  G  T  R  T  A  A  S  T  T  T  A  E  Y  T  T  S  F  Y </second_frame>
            <third_frame>   D  Q  L  R  T  L  T  H  *  Y  W  *  M  V  I  Q  E  M  G  S  R  G  G  G  E  A  K  A  N  A  L  A  T  Q  G  S  L  Y  S  L  T  L  D  E  V  R  N  Q  L  G  N  C  G  K  P  L  N  S  M  N  L  D  E  F  V  K  T  V  W  T  I  E  S  N  Q  E  V  V  G  G  N  D  Y  G  P  V  Q  Q  G  A  S  Q  H  H  P  S  S  I  T  M  S  R  D  L  S  K  K  T  V  D  E  V  W  Q  D  I  Q  Q  G  V  K  I  D  N  V  D  K  R  S  Q  E  R  Q  L  T  L  G  E  I  T  L  E  D  F  L  V  K  A  G  V  I  A  E  S  T  Q  G  K  R  I  S  G  L  V  F  G  V  D  S  M  S  L  T  Q  Q  A  Q  W  T  H  Y  Q  I  P  A  M  Q  Q  V  P  E  Q  Q  H  Q  Q  Q  Q  Q  N  I  P  P  V  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113517" stop="114095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVIQEMGSRGGGEAKANALATQGSLYSLTLDEVRNQLGNCGKPLNSMNLDEFVKTVWTIESNQEVVGGNDYGPVQQGASQHHPSSITMSRDLSKKTVDEVWQDIQQGVKIDNVDKRSQERQLTLGEITLEDFLVKAGVIAESTQGKRISGLVFGVDSMSLTQQAQWTHYQIPAMQQVPEQQHQQQQQNIPPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="118780" PGL_stop="116428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118780" e_stop="118386"/>
            <exon e_start="117774" e_stop="117650"/>
            <exon e_start="116934" e_stop="116428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.884"/>
          <exon-intron don_prob="0.416" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.884">
            <gDNA_exon_boundary e_start="118780" e_stop="118386" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117774" e_stop="117650" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.416" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116934" e_stop="116428" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118780" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118780" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118743" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118742" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118740" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118684" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118621" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118530" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118529" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E433964" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117768" stop="117650"/>
              <exon start="116934" stop="116578"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAAGTGAGAGATGATGGCAAATCCAAGGAGGACAACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG : GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG : GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</gDNA_template>
            <first_frame> E  K  V  R  D  D  G  K  S  K  E  D  N  I  F  L  F  R  *  P  E  P  P  P  T  S  N  L  H  R  P  I  S  E  S  G  N  P  N  L  K  F  D  E  L  T  Q  I  L  P  Q  E  T  P  C  F  P  F  S  P  I  P  F  P  F  S  H  M  G  F  T  Q  I  P  T  S  F  N  F  *  P  S  T  R  R  V  A  C  *  G  S  I  W  V  R  S  K  C  *  S  C  Q  V  F  S  F  F  F  F  D  C  Q  R  *  T  W  M  V  D  Q  S  Y  F  P  C  P  *  F  C  H  F  R :   W  G  S  S  L  C  F  S  S  F  G  *  D  Q  I  W  W  S  *  R  Q  P  Q  T  P  Y  M  Q  *  D  I  C  Y  L  G  S  *  D  S  I  P   : G  G  K  *  C  G  R  K  R  L  R  G  S  D  N  W  C  R  *  S  C  C  C  S  Q  P  P  W  N  C  P  C  S  S  K  C  *  S  G  A  K  Y  I  L  H  G  V  P  G  *  R  N  Q  L  Q  W  L  N  D  *  F  *  C  M  E  G  S  I  S  S  H  C  Y  I  L  M  V  A  P  I  R  Q  L  K  F  N  A  F  A  S  G  W  *  F  F  L  A  D  E  G  F  E  G  C  D  *  S  S  *  C  R  L  G  N  S  V  H  K  A  *  L  L  I  I  G  L  F  L  F  F  P  F  W  V  L  *  Q  K  D  V  S  S  D  I  Y  L  L  D  T  A  C  L  S  D  R  L  Y  I  *  K  Q  Y  L  S  S  *  N  L  A  </first_frame>
            <second_frame>  K  K  *  E  M  M  A  N  P  R  R  T  T  F  S  S  S  G  N  Q  N  H  H  Q  L  P  I  S  T  A  P  F  Q  N  Q  G  T  Q  I  S  S  L  M  N  S  L  K  S  F  L  K  K  P  H  A  F  P  F  L  L  S  L  F  L  F  L  T  W  V  S  L  R  F  Q  H  P  S  T  S  N  P  Q  R  E  E  W  H  A  K  V  Q  S  G  S  D  Q  N  A  N  L  V  R  F  S  A  S  S  S  S  I  A  K  D  K  R  G  W  L  I  N  P  I  S  L  A  L  D  S  A  I  S   : G  G  A  A  V  C  A  S  V  H  L  G  E  I  R  S  G  G  L  R  G  N  H  R  H  H  T  C  N  E  T  F  V  I  W  G  A  K  T  V  F  R  :  V  E  N  D  A  V  E  K  G  Y  A  E  V  I  I  G  A  D  E  V  A  V  A  V  S  P  L  G  T  A  H  A  L  V  N  V  D  P  G  R  S  T  Y  F  M  G  C  Q  D  S  V  I  N  Y  N  G  S  T  T  D  F  N  V  W  K  D  L  *  V  P  I  V  I  F  S  W  L  R  Q  *  G  N  *  S  L  M  R  L  H  Q  A  G  N  F  F  L  Q  M  R  V  L  K  G  V  I  S  L  A  S  V  D  *  E  T  V  Y  I  R  H  S  C  *  S  L  A  F  F  C  S  F  P  F  G  F  Y  D  K  K  M  *  A  Q  T  Y  I  Y  W  I  Q  L  A  C  P  T  G  F  I  Y  E  S  S  I  *  A  L  E  I  *  Q </second_frame>
            <third_frame>   K  S  E  R  *  W  Q  I  Q  G  G  Q  H  F  P  L  P  V  T  R  T  T  T  N  F  Q  S  P  P  P  H  F  R  I  R  E  P  K  S  Q  V  *  *  T  H  S  N  P  S  S  R  N  P  M  L  S  L  F  S  Y  P  F  S  F  F  S  H  G  F  H  S  D  S  N  I  L  Q  L  L  T  L  N  E  K  S  G  M  L  R  F  N  L  G  P  I  K  M  L  I  L  S  G  F  Q  L  L  L  L  R  L  P  K  I  N  V  D  G  *  S  I  L  F  P  L  P  L  I  L  P  F  Q  :  V  G  Q  Q  F  V  L  Q  F  I  W  V  R  S  D  L  V  V  L  E  A  T  T  D  T  I  H  A  M  R  H  L  L  F  G  E  L  R  Q  Y  S  G :   W  K  M  M  R  *  K  K  V  T  R  K  *  *  L  V  Q  M  K  L  L  L  Q  S  A  P  L  E  L  P  M  L  *  *  M  L  I  R  G  E  V  H  T  S  W  G  A  R  I  A  *  S  T  T  M  A  Q  R  L  I  L  M  Y  G  R  I  Y  K  F  P  L  L  Y  S  H  G  C  A  N  K  A  T  E  V  *  C  V  C  I  R  L  V  I  F  S  C  R  *  G  F  *  R  V  *  L  V  *  L  V  *  I  R  K  Q  C  T  *  G  I  A  A  N  H  W  P  F  F  V  L  S  L  L  G  F  M  T  K  R  C  E  L  R  H  I  S  T  G  Y  S  L  P  V  R  Q  A  L  Y  M  K  A  V  F  K  L  L  K  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118770" stop="118386"/>
                    <exon start="117774" stop="117650"/>
                    <exon start="116934" stop="116731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EMMANPRRTTFSSSGNQNHHQLPISTAPFQNQGTQISSLMNSLKSFLKKPHAFPFLLSLFLFLTWVSLRFQHPSTSNPQREEWHAKVQSGSDQNANLVRFSASSSSIAKDKRGWLINPISLALDSAISGGAAVCASVHLGEIRSGGLRGNHRHHTCNETFVIWGAKTVFRVENDAVEKGYAEVIIGADEVAVAVSPLGTAHALVNVDPGRSTYFMGCQDSVINYNGSTTDFNVWKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="122278" PGL_stop="119865"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122278" e_stop="122054"/>
            <exon e_start="121928" e_stop="121841"/>
            <exon e_start="121710" e_stop="121625"/>
            <exon e_start="121524" e_stop="121417"/>
            <exon e_start="120927" e_stop="120883"/>
            <exon e_start="120788" e_stop="120700"/>
            <exon e_start="120072" e_stop="120029"/>
            <exon e_start="119924" e_stop="119865"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="122278" e_stop="122054" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.991">
            <gDNA_intron_boundary i_start="122053" i_stop="121929" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121928" e_stop="121841" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="121840" i_stop="121711" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121710" e_stop="121625" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.756">
            <gDNA_intron_boundary i_start="121624" i_stop="121525" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121524" e_stop="121417" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="121416" i_stop="120928" i_length="489"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120927" e_stop="120883" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.972">
            <gDNA_intron_boundary i_start="120882" i_stop="120789" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120788" e_stop="120700" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="120699" i_stop="120073" i_length="627"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="120072" e_stop="120029" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="120028" i_stop="119925" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="0.933">
            <gDNA_exon_boundary e_start="119924" e_stop="119865" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122278" stop="122054"/>
              <exon start="121928" stop="121841"/>
              <exon start="121710" stop="121625"/>
              <exon start="121524" stop="121417"/>
              <exon start="120927" stop="120883"/>
              <exon start="120788" stop="120700"/>
              <exon start="120072" stop="120029"/>
              <exon start="119924" stop="119865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699478" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG : ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG : GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA : GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG : GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG : TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT : ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG : GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCC</gDNA_template>
            <first_frame> E  T  L  H  K  H  N  K  I  K  Q  D  K  N  N  F  Q  E  A  V  E  G  S  P  D  E  S  N  G  L  N  V  S  Q  N  I  N  P  S  E  R  R  A  P  S  S  Q  K  S  L  L  M  N  W  P  L  M  S  S  I  I  V  Y  C  V  F  Q  L  H  D  I  A  Y  L  E  :  I  F  S  L  W  A  V  S  P  R  T  L  G  G  L  S  F  T  T  S  D  V  G  Q  V  L  A  I  T   : G  I  G  L  L  L  F  Q  L  L  V  Y  P  L  V  E  R  I  T  G  P  V  M  I  S  R  I  G  A  :  V  L  S  I  P  L  L  A  S  Y  P  Y  I  A  L  L  T  G  F  G  L  S  I  A  L  N  C  A  S  M  L  K  N  I  L  S  :  V  S  I  T  T  G  L  L  I  M  Q  N  R  A  V  :  S  Q  E  Q  R  G  A  A  N  G  I  S  M  S  S  M  S  L  F  K  T  I  G  P  A  A  G  G  S  L :   L  S  W  S  Q  R  R  L  D  A  D  I  L  P   : G  D  Q  L  V  F  F  V  L  N  A  I  E  L  L  G  L  L  L  T  </first_frame>
            <second_frame>  R  H  F  T  S  I  T  K  *  N  K  I  K  I  T  F  K  R  L  L  K  D  L  Q  M  N  Q  M  D  *  M  C  L  R  T  *  I  L  L  N  A  E  P  L  A  L  K  K  A  F  *  *  I  G  P  *  C  L  L  L  L  S  T  V  Y  S  S  S  T  I  *  P  I  W  R :   Y  F  H  S  G  L  L  V  Q  G  P  L  G  V  *  A  S  Q  L  L  M  L  D  K  F  L  P  S  Q  :  A  L  V  C  Y  S  F  S  C  L  F  I  H  W  W  K  G  L  L  G  L  S  *  F  L  G  S  V  Q :   F  *  A  Y  L  Y  W  L  A  T  H  I  *  L  Y  *  L  V  L  A  S  P  *  L  S  T  V  H  L  C  *  R  I  F  S  R :   Y  Q  L  Q  L  A  Y  *  S  C  R  I  E  L  C :   P  R  S  K  E  E  L  Q  M  A  F  Q  C  P  Q  C  R  F  S  R  Q  L  A  L  Q  P  G  A  H   : Y  C  P  G  H  N  G  V  *  M  L  I  F  C  L  :  V  I  S  W  C  S  L  F  S  T  P  L  S  C  S  A  Y  F  *  P </second_frame>
            <third_frame>   D  T  S  Q  A  *  Q  N  K  T  R  *  K  *  L  S  R  G  C  *  R  I  S  R  *  I  K  W  I  K  C  V  S  E  H  K  S  F  *  T  Q  S  P  *  L  S  K  K  P  S  D  E  L  A  L  N  V  F  Y  Y  C  L  L  C  I  P  A  P  R  Y  S  L  F  G   : D  I  F  T  L  G  C  *  S  K  D  P  W  G  F  K  L  H  N  F  *  C  W  T  S  S  C  H  H  R :   H  W  F  A  T  L  S  A  A  C  L  S  T  G  G  K  D  Y  W  A  C  H  D  F  S  D  R  C   : S  F  K  H  T  F  I  G  *  L  P  I  Y  S  F  I  N  W  F  W  P  L  H  S  S  Q  L  C  I  Y  V  K  E  Y  S  L   : G  I  N  Y  N  W  L  T  N  H  A  E  *  S  C   : V  P  G  A  K  R  S  C  K  W  H  F  N  V  L  N  V  A  F  Q  D  N  W  P  C  S  R  G  L  I  :  I  V  L  V  T  T  A  S  R  C  *  Y  S  A  W :   *  S  V  G  V  L  C  S  Q  R  H  *  V  A  R  P  T  S  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122278" stop="122054"/>
                    <exon start="121928" stop="121841"/>
                    <exon start="121710" stop="121625"/>
                    <exon start="121524" stop="121417"/>
                    <exon start="120927" stop="120883"/>
                    <exon start="120788" stop="120700"/>
                    <exon start="120072" stop="120029"/>
                    <exon start="119924" stop="119866"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETLHKHNKIKQDKNNFQEAVEGSPDESNGLNVSQNINPSERRAPSSQKSLLMNWPLMSSIIVYCVFQLHDIAYLEIFSLWAVSPRTLGGLSFTTSDVGQVLAITGIGLLLFQLLVYPLVERITGPVMISRIGAVLSIPLLASYPYIALLTGFGLSIALNCASMLKNILSVSITTGLLIMQNRAVSQEQRGAANGISMSSMSLFKTIGPAAGGSLLSWSQRRLDADILPGDQLVFFVLNAIELLGLLLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 209 chains have been computed
$ 
$ memory statistics:
$ 375736 bytes spliced alignments in total
$ 109 spliced alignments have been stored
$ 3447 bytes was the average size of a spliced alignment
$ 35352 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1537 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 253 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:27:33
-->
