<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:27:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578561" ref_strand="+" ref_description="SGN-U578561 Tomato 200607#2 [24 ESTs aligned] (*GB) gi|147804664|emb|CAN66637.1| (e_value=5e-131) hypothetical; (*ATH) AT2G10090.1 (e_value=4e-31) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-24) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttgaagatctcatagtaaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14844" stop="12356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14544" g_stop="12712" g_length="1833"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1870" r_length="1870" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U578561" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>1833</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14544" e_stop="12712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAA-C-------C--T-AGGG-ATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATT-TTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAG-AAATTTA-ACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACT-TTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGC-AAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGAAGATCTCACAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCT------------T--C--GG-AA--AAG--A-ATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATTTGGTCCAAAAAGCAATCCTCCTAAG---AAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAG</genome_strand>
        <mrna_strand>CGGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAA---ATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACAT-AAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTATTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGAAGATCTCATAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591658" ref_strand="-" ref_description="SGN-U591658 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147828230|emb|CAN66576.1| (e_value=2e-35) hypothetical; (*ATH) AT2G10090.1 (e_value=2e-18) | Symbol: None | expressed protein | chr2:3830613-3830972 REVERSE | Aliases: F7B19.23, F7B19_23; ">
      <seq>gaacagatttcacagaacagacacgttccttgctgaaaattgctataaaggaagtcaattttgattttcaaacactgaaaattttccttctcngtattatttttctctaaaaaaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgctgttctgaagtttgctgaagttaaagaagtttgagaaaaaaaaagactaactcaagtcaaacaaatgctggaatagtaagtgctgcaacaacatcggctgcacataatcattcagatgctatcttagcggcggctgagaaacctgcagagttttctggagtcgactttgagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcattaatgagaatgttcctgtttatcagatgaaactccggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgaacaacaatgccaaaacctcaaagaactcttggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggtaaaatttttggactataagatgatagacaataagactgtcgtcacccaagttcaagaattgcaggtcataatccatgatctgtgctgaatgtataaatttatttaatgcctatgttagaaatattaagttttcccttaataaatttatttaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14861" stop="13157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14561" g_stop="14364" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14363" i_stop="13956" i_length="408">
            <donor d_prob="0.695" d_score="0.90"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13955" g_stop="13461" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="670" r_length="481" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U591658" ref_strand="-">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591658" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14561" e_stop="14364"/>
          <exon e_start="13955" e_stop="13461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATG</genome_strand>
        <mrna_strand>GAACAGATTTCACAGAACAGACACGTTCCTTGCTGAAAATTGCTAT-AAAGGAAGTCAA-TTTTGATTTTCAAA-CACTGAAA----ATTTTCCTTCTCNGTA-TTATTTTTCTCT-AAAAAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTGAAGTTTGCTGAAGTTAAAGAAGTTTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAGACTAACTCAAGTCAAACAAATGCTGGAATAGTAAGTGCTGCAACAACATCGGCTGCACATAATCATTCAGATGCTATCTTAGCGGCGGCTGAGAAACCTGCAGAGTTTTCTGGAGTCGACTTTGAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATTAATGAGAATGTTCCTGTT-TATCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGAAC--AACAA----T---GC----CAAAACCTC-AAAGAACTCTTGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGTAAAATTTTTGGACTATAAGATGATAGACAATAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593560" ref_strand="+" ref_description="SGN-U593560 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cggctgccttagcaccagctgataaaccttcaaagttttctggagtcgactctaagagatggcagcgggagatgttcttctatctcactacgttcagtctgcacaacttcatcaatgacaatgttcctgttatgtcacatgaaacttcggctgatgaacgattcttggtaacacaagcatggacacactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="14174" stop="13386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13876" g_stop="13686" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U593560" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U593560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13876" e_stop="13686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCA</genome_strand>
        <mrna_strand>CGGCTGCCTTAGCACCAGCTGATAAACCTTCAAAGTTTTCTGGAGTCGACTCTAAGAGATGGCAGCGGGAGATGTTCTTCTATCTCACTACGTTCAGTCTGCACAACTTCATCAATGACAATGTTCCTGTTATGTCACATGAAACTTCGGCTGATGAACGATTCTTGGTAACACAAGCATGGACACACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U597953" ref_strand="+" ref_description="SGN-U597953 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>cttgctcgtttctcagtttgctgcacacaagaagacaagaagcacaaataatcaatagcaaatgtacgcagcaaaagaagccaagatcgagtccaagatcgagtaaaatgggtctgtcaagtaatcaagaaaatagagtgatttgtcaaagccaaaaataatatattaaaggtataagttgatacaaataaggaaaaccttaaatatattagtaaggaaagaagttgtatataataaggattgtgctttaaaagggaatccttgtttaataataacttccttatcttatctgataaggactgaaggcaaaaggaactctataagaagaagaagacgctgatgaagaaaatgaggacttcatgcagagaacaagggagaattattcatcaaattgaagtcttcaaggttgataggattactacgtgtaaaacattcttgagtaagaaggttttatcgtgtagaactatttgtcttgtttttgttcttaattgtagtttacagtttattgtacaaagggtgggtttggctctttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="34932" stop="36836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35239" g_stop="35509" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="305" r_length="271" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35510" i_stop="36306" i_length="797">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36307" g_stop="36536" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="535" r_length="230" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U597953" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U597953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35239" e_stop="35509"/>
          <exon e_start="36307" e_stop="36536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAGGCAAAAGTAGGGGTAGACATTCGGTTTTTCGGTTCGGTTCGGTTTTTTTTTCGGTTTTCGGTTTTTGTAAATTGCGTACCGAATACCGAACCGAAATATTTCGATTCGGTTCGGTTTTTGTTAATTCGGTTCGGTTTTTATTAATTCGGCTCGGTTTTTTAATGGGCCTGTTTAGTGGGCTTTTTAAAATTTTAAACTTTACAATTTTTTCAATTTTTTGTTTCATACTTTCATTTTTCAACTTAATGGCTGCTGCTGAGTGCTGTCGCGGCTGGCGGCTGGTTGCTGCTATTTGCGGCTGGCGGGCGGCGGCTGGTTGCTGCTGTGCTGCTGGCTGCGGCTGGCTGCTGCTTCCCTTGTTGTGCTGCTGGCGGTGCTTCAGTGAAGACAAGAATGGTTGGAGCTGAAGAGTGATTGGAGTAGAAGAGGAAGAGGAGAAAAGAAGAGGAAGAAGATGAGGAGTGAATTGAAAGGAAAAAAAATCTGGTAGAAAGAGAAAGAGTCAAAGTAGGGTATTAGGGTTTTTACTTTTTTTTTAAAAAAAAAATATTTAATATTAATAATTATTAATTAATATAATATAATTTTTAAATTATTAAATTATAATATAATATTTTGGTTTAAATCGAAATACCGAATTCCAAAGTAATATGTACCGAAAACCGAATCGAAATACCAAAAAATACAAAAAATTAAACCGAATACCGAACCGAAAACCGAAATACCGAAACCAAAATTCTAAAAAAATTCGGTTCGGTTCGGTGTTTCGGTTTTTCGGTGTTTATGCCCACCCCTAGGCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTA</genome_strand>
        <mrna_strand>ACAAGAAGCACAAATAATCAATAGCAAATGTACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCTGTCAAGTAATCAAGAAAATAGAGTGATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTAGTAAGGAAAGAAGTTGTATATAATAAGGATTGTGCTTTAAAAGGGAATCCTTGTTTAATAATAACTTCCTTATCTTATCTGATAAGGACTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGAACTCTATAAGAAGAAGAAGACGCTGATGAAGAAAATGAGGACTTCATGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTACTACGTGTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584083" ref_strand="+" ref_description="SGN-U584083 Tomato 200607#2 [9 ESTs aligned] (*GB) gi|157353474|emb|CAO45413.1| (e_value=2e-53) unnamed; (*ATH) AT1G08680.1 (e_value=5e-61)  Symbol: None | ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4), nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-lik... ; (*SWP) sp|P52594|NUPL_HUMAN (e_value=3e-19) Nucleoporin-like protein RIP OS=Homo sapiens GN=HRB; ">
      <seq>gaaaaaaaagaacctcaagttgaaatctgaaggtggagagagagagagagctgcttcatgcctctctcttcattcctccttggacaaaattcaaaatccattacttaaaaccctagtttttttcaatcaatttcccccaaagttgtttggggaaattcaatttttcaattgggggaaataaacctacaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacatcgtgagtttactcaccgtgtgaagtcagtttccatgtctaagtttacttcccaagaagtggaagctcttcaacagggtggtaatcagcgggccagagagatatatttaaaaagttgggaccctcaaagtcagtggcttcctaataacagcaatgttgataaagtgagggaatttataaagaccgtctatgttgataaaaaatatgctgggggcgcagtcctctgatagacctcctagagatatccagaatttgagaaaccacgacgatgatatgaggagagcaagttcttatcattcctattctcaaagtccaccatatgactttcagtatgaagaacgacgttntgggaaaaatgcaccagcactcactanaaagccaggatcanaccggggantttatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45687" stop="48911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45987" g_stop="46273" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47322" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="349" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47873" g_stop="47960" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="437" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48064" g_stop="48125" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="499" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93">
            <donor d_prob="0.745" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48219" g_stop="48315" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="597" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="48316" i_stop="48456" i_length="141">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="48457" g_stop="48611" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="752" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U584083" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45987" e_stop="46273"/>
          <exon e_start="47261" e_stop="47322"/>
          <exon e_start="47873" e_stop="47960"/>
          <exon e_start="48064" e_stop="48125"/>
          <exon e_start="48219" e_stop="48315"/>
          <exon e_start="48457" e_stop="48611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAGAACCTCAAGTTGAAATCTGAAGGTGGAGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACTATCAGGTGAGGGTGCAACAGGTTAGTGATGTTCATCTAAATTTGTTGCCTAAGCATTGTCCGAATAAAAACAGCGGTAAAGTAAAATTTTAAGTTCCTCTTGTATCTGTTTGTGATGTTTTTTCTACTATGTTCGTAAACTTGAAGTCCTGTACATCAGGATGTGGAAGTTAAAATGTTTCATCGTATCATTGCAGTCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAGGTGAAAATATTGTACTCTTTACCTATTAAAAAACAGGTAAAATAATTGCTGGTTTTTCTTCACTTTGAAGTTAAAATTCTCTGTCCTGTATTTATTTTTTCAGCGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAGGTACTGGATTAGCAAGTTACTATTAGTAGATTATAAGTTCCTGGTAAATTGACAACTTCAAGATACAAAATCCTAACTTTCTTTTTTCATCAGCAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCT-GGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAGGTACTATATCTGGAGTAATATTTTGTCTATGCAGTACTTTAGACTAGAACGTTACTTGAAACTTCTAGCTATGATTTAGTCATAATATTCAAATCAGCACTGGGTCCAGACTAATGTGTTCAATATCCATTGAGTTGTCAGAATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGA</genome_strand>
        <mrna_strand>GAAAAAAAAGAACCTCAAGTTGAAATCTGAAGGTGGAGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG.......................................................................................................CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG.............................................................................................CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAG.............................................................................................................................................AATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTNTGGGAAAAATGCACCAGCACTCACTANAAAGCCAGGATCANACCGGGGANTTTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U588639" ref_strand="+" ref_description="SGN-U588639 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353474|emb|CAO45413.1| (e_value=3e-18) unnamed; (*ATH) AT1G08680.1 (e_value=9e-20)  Symbol: None | ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4), nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-lik... ; ">
      <seq>agagagagagagagctgcttcatgcctctctcttcattcctccttggacaaaattcaaaatccattacttaaaaccctagtttttttcaatcaatttcccccaaagttgtttggggaaattcaatttttcaattgggggaaataaacctacaagcatgagtagcaggagagaagaagagaggaacgagaagataataagagggcttctcaagctccctcccaatcgcaaatgcatcaactgcaatagcttgggtccccagtatgtgtgcacaaacttttggacctttgtctgcatgacatgcagcggaatacagtaagtgtatcatattgcatgctctttacatctttagtcgcataagttgttagtccagaaataaagtaggtaaagctgctgggggtattcaagagggtttcttcttttcaggattgtaaaatgcattggcacttctatgttctaactacagcggaatgcatatgccaaaattttacctgatatgcatgcagctaagtagttaattttagctactactggattcaatctgtccgaaatctatnggactaatgttctgaaaaattagtttggctttttgtgataanaanatgtccatcctttttcttattatttcataaaaaggaaaaggnccatccttgtgttaattttttaant</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="45723" stop="47976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46023" g_stop="46273" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47261" g_stop="47676" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="667" r_length="416" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U588639" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U588639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46023" e_stop="46273"/>
          <exon e_start="47261" e_stop="47676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTGGTCTCTTATTCTATTCATTTCTCAATCTTTTTTTTACAATTTTCAACTTGACTTTTTTTTTGTTTAATAGTTCATCATTCTGTTGTTGTTAGAGAATTGTATTTAAAGAAGTTCTAATTTGTTTGAAAATATAATTGTTAGAATGAGATGGATATGAATAAGGTAAAAATGCAAGCTTTTGTATTGGAATGAAAAGGGGATGAGTAAGGTAGGTAGAGGAGAGGTATTTGAGAGAACCCCTACTTTGTGTTAAAAGATGAGATTTAAGTAATGAATGAAATAGAGGTGAATACGGTAGGTTAAGTTTGACATTAAGAGAACCTCTACTTTGTCTTTAAAGGAGAACTTTTAATACCAGAATGAACTGGACGTGAATAGGGTAGATACTAGTGTTGAATTAAAGGACCTTAAGTTCTTTATCAAAAAGAGGACCTTAAGTTTCTTGGACCATTAAATTTGTAGTAAAAGATGATTTTTTTATGTATTGAAATGAAATGAACCAGAATTAAGTATAATGTATACGAGGTTCATGTAATCAAGTCAAACCCAAACTAATTTCGGGATGGGTTGTATGATTGATATAGATTGCACTCTTGCCAATTTCCCAGTAGAATGTACATATGCATCAGTGCTGTTTTACCTCTTAGAATTATTCTCATATTGTTTGCTTCATATTAGTTATAAGGGGTATTTGACTCTTTATCTTTTTCTTAAATGGGTAATCAATGACTATATGCCTTCGTGAAGTAGTAAGAGTGAAATTGAGGATAAATAATGCTGCCTTGGTATTCTGAAGTGACAAAAATTTGGAACAAATTTATTAGCTATGGTTACCGGGGAAAAGGATTGGAGGAGTAGTTCCTTGATATGAATAGTAGAAAAGCTAATGTCACCAATCTGTTTATCCTCTGTTCACTATTTTAGTCAATAAATTTAGCTCGTTTTCATTTTGAATCAATCAATCATTGCATTTATTACGATGTGCAGGGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACT</genome_strand>
        <mrna_strand>AGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATNGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAANAANATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGNCCATCCTTGTGTTAATTTTTTAANT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577705" ref_strand="+" ref_description="SGN-U577705 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|147817025|emb|CAN66445.1| (e_value=1e-38) hypothetical; (*ATH) AT1G08680.1 (e_value=5e-22)  Symbol: None | ARF GAP-like zinc finger-containing protein ZiGA4 (ZIGA4), nearly identical to ARF GAP-like zinc finger-containing protein ZiGA4 GI:10441354 from (Arabidopsis thaliana); contains InterPro accession IPR001164: Human Rev interacting-lik... ; ">
      <seq>acgaggctgatatgcagcggcatgcagcaacaacaggcatcgaacagttcaccctggcaccaacacctgcttatggccataattcttttgacattttacctgaaaagacacagcaacaattggtcactgagaagtcattggatgtggatgatggatgggcaacatttgatgtgcctcagcacgtgacactcactggaagtaataactttacctccaacacgattcaattaaagggtgatgctcaatcgaattcggacccaactttctccgtcatgcaatggccatcacctatggaatctgcccctcatgggccagccgttagagactccactgcttgtgcattagatttatcaatgcctgctccatttcatggaggtgtgctgaatgttgaagtaactccaagtgcaagaagtactgacttgtggagtgcctttgatgtttctaatgaccacttagctctcaagagtttgcctaatagtaaggaacaagttgtaatgaaccatgatctagttgatgatcagtacatgggcttaagaggagtagagaatgcagtgacaggtcaaagtcaaagagctgtgctggatagtggatatcctattaccagttttccatcatatgtcagtgcctcgtcatctggattgtccactcttcctgtagcgacaggagtgcattcacatgcaaatgagcagaagtccaacaacccatttgatctcccttacgatgctgacatggaatgcagcaatatgccgcagtactgggacatgagctcattacaggctgcattgccaagtgatgggatgtcatcttcttttgttggtggtgtgaccgaatcttggtttcctcagaacccagcaacagcttatggtcctgctggacagcatgggacattatttgtttcctcacaaccagctggcaatcaaatatcgaatgtgccgacacacggtcaagttgctgctattggcggaaatccatttgcataggattgtgtattcaactagttgttggatcagctagatcatcatttcaacttttagattcctatgtatttcatgtttgtattgttaaaaaaagagaatgagagacaactaggcagaaattaccaaatttcaaaggcttgccttttcttgttgaggcctacagtgtgttctgatactatggttgatgtgattatggctgaaatgttttgaggatgtccttcttggctactttggcgtattgattttcttgtcaacgctttatcgatatcgacaaacttatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="49798" stop="54830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50108" g_stop="50509" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="419" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50510" i_stop="50658" i_length="149">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50659" g_stop="50784" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="545" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50861" g_stop="50974" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="659" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51081" g_stop="51167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="746" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51743" g_stop="51878" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="747" r_stop="882" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51879" i_stop="51956" i_length="78">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.940" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51957" g_stop="51999" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="883" r_stop="925" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52000" i_stop="54194" i_length="2195">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="54195" g_stop="54531" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1262" r_length="337" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U577705" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1245</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50108" e_stop="50509"/>
          <exon e_start="50659" e_stop="50784"/>
          <exon e_start="50861" e_stop="50974"/>
          <exon e_start="51081" e_stop="51167"/>
          <exon e_start="51743" e_stop="51878"/>
          <exon e_start="51957" e_stop="51999"/>
          <exon e_start="54195" e_stop="54531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGACGTAAGTGTACTCTTATTGAGTTTGGGAAGTGGCATAAGCAATTTATGAGCTGAAAATCATCTTTTGACAACTTCTGGTTAATTTATTATTATTTTGATGTGAAACCCTTCAATTTATGAGGTCGGATAATATTTACTCGTCTTTGGCAGTTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAGGTAATTATCTTTCTAGTATGGTTAAAATTTATGAGTTTGCTTCTGCCCTTTGCTTTTAAAGACTTCTATTCCGCAGAATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCGGTCAGTTAATTCACTCACCTGTGCTTTCCTGCGTGGCCACTCTTTTAAACATCTAGATATCAGCATGCTATTTCCTGCTTCTTACACATAAGGTTCTTATTAACAGACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATGGTAAATCACACTTTCCGTTATATTGTTTTCTGAAAAATATAGTGTGAGACTTTTGACATTTTGTTTTTGGTTATCCGAGTCCATCTACGTCAAGAAAAATTTCCCTTGACAGCACTCCCCTCCAAGAAAAAAGATGAACTTTTAGGGGTCAATTGCTTCCTTTAAATACTAAAGGAGGCTTCTTATGTTGTACTGCAAATGGTCTATCTGATATTTACACTAGGAATCTAGGCTAAATTTCAGGCCACATTGTAAAGAAAATAGGCCTTAGGTGGTTCTAGTTCAATCCCAAAGTCTAGCTCTTGAGGTAAGGATTGTCCAAAAACATGTAAGGAGACAAAAACTCTAACCCCCTCCCCCCTTTCGCTCTGAGCCTGCCTCTGATGCCATGTAATGAAGTAGACGTTGAGCCTGGTTCAAGCCCAAAATTAGCTCATGAGGAAACCAATGTAAGAAGACAATAACCCTGTACCGTCAAGCAATGTGGGACTGTCACACACAGAATGTCTTCTAAAACTTGATTTCCTAAAAAAACTGTTTCTTTGCTGCATTCTAATGTGAATCATTAATTCCAGCCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATGGTATGTGATGTTTACTTTTTCAAGAAGTCTTTTCTTCTGTCAAACTTTCAGCCTCTCAAATATGTCCTGTCTCTGTAGGGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATCGTGAGTCATTCTACTTTTTCCATTTTCCTTGTAACCAATGTGCAAAAAATTTCTAGTGAAATCTTATTTCACCAGCAATATCAGCTCTCTACTTGCTAGATATAACATAATGCACAGGTCCTCTACTATGAAGATGCTTGAACATATTTGACACTGACAGGATTTCCACTTAATTGCTATTTTGTTCTTGTGTGTGTATTTTGGGATTATATGATATCTTCTGTCTGGTGAGAATTTTGTGTCTCCACGAGAATGCTGGTGCTGTTGAATTGCTTATGATAAAAAGTACAAAAGTACAGTTAACATACAAGAGGTAGATGGGGATTGTTAGAGGCCGAGTTAATCTAGTGACAGTTCGTGTTGTCACCAGATTTTTTGTGGTTGATAAGTGTCTGGCTGCTGAATCTAATTGCAGGGACATATATAGTGGTTAAAATGATTATGCTGGTCTTAGAGTTGATACTGATTCTGTTAAGAAGAATCTTTCTTTGTTCCTTCTTTTTGGAGATTTCGAAAGCTTTTTCAAAGTTCGAGAGGAGTTGAACAACGTGTTCCCTTGTATCCTTTATTCTTTAGAATCTCGTGTTGGATTAACGGACAACACAGACCTATGGATAGGCTGATGGATGGAGAATTTGAGGGGCTTGAGATAGATGGTGATGGAAGAGGAAATACGACTTCATCCTCACTTTTTGTAATGTTTTCTATCTTTCAGGTATACTTTGTATGGTGGGGGTAGGGGTTTGCCCTCTTTTATGTAATTTATCACTTCATTTAAAAAAAAAAAGAACTTCAGCATCTATCTGAGGCAGTATGGTTTACGGTTTGAAGCAGTGTCAGGATTACATATGATTGGTTCACACTTGATGGGGGTTTTGAATTCTAGTTGCACACCTTCAAGGCAGCACTTCTGGAATCGTGGAGATTTTCTCAAGAGGAGAATATTTATGGAAGGTTAATATCTACGAAATATGGATCAGAAGAATAATTAATTGTTCTAAGGTGGGGCAGATTGCCATTTTCAAAATATGGTTGTAGGGTAGGATAATTCTTATAGAGTGAATTTGTAGAGGGGGGGGGGGGGGGGAATACATATGGAAATAGAAGATTTGTAGATGCACTAGATATAATGTGGGTTAGTGCTACTAGAGTACAATTCTATAGAGGTGTATATTTCGGGGGAACATCCTTGGAGAACAAGTATCTGCAAGTGGTTAGTCTTTATCCACGGCACCAATCACTTCAAGCTGGATGATTGGGGCATCATGTGGGGTCCCCTTGAAATGGGATGACTGAGTGATCATGTGAGATAAAATTTTAGGAAGACCATCCCGCATTGGTGTTTTCCTTGGGAGAAAGAGGTGTTGAGTTTATATGGAGGGAGTGGGGCTGGTATCTCTCAAATAAAATTGTATTGCATGGAGTGGGCAGAACTGGCAATAAGAAGGAGGTGCTTAAGAAAGCCTGGAAGATTTTGTTGCTGAAATATGTATGTGTGTTTTGTGGCTGCTTGGTGTGATACTGTGATGTGTGGATGCCTTCTTAAAGCAGATAACTTAAGAAAGGGAAACTACCTTTTTAGGAGTATTTCCTGAACCTAAAGACAAGAAGAAGGTAATATGAAAATTGCCACAGGATGAGAAATTTACCCCTGTAATTGTATTTGGTTAATCCTATCAGATGCCACTCAAAGAGGAGTCTTTTTTAGATACAGATGTATTATATATTCTTTGAGGAGTCACTCTCTGAGTGAAACCTGTACTGTGGTAATTTGGCAAGTCTTCAACTTTAAGGTTAGCTCGTTAGACAGAAGCTTAGTTGAACTGCACTTAAATGACTAGCCAAAACATTTTTTTTCTCAATGTTGGTAGGGAAGTAGTGGAGTCGTGCCTAAACAATCACCCATGAATCAATACACGACATCTCCTCGTTCATTAGACAAAATGGAGCTATTATTAGATATTTTATTTTTCCAGAAAACAGTAAAAATAAAAAGAAAGCATTTCATTCAATGTGTGTGTGCCCATTGTTTGAAAGATCAAAGAGATCCTTTGTATGAGCAGTCCACTAATGCAAGCTCTCATAAATATGCATGTCGGATAGTGTAAAACATCTTGAAGAGTTTGCTTTCTGTATAGTGCAGTTCTGGATTGTATCCATTATCATAACTGCTAACTAGATTGTTCCTTGTGCAGGAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAACGCTTTATCGATATCGACAAACTTATGAACA</genome_strand>
        <mrna_strand>CGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC.....................................................................................................................................................TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG............................................................................AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG..........................................................................................................ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG..............................................................................GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAACGCTTTATCGATATCGACAAACTTATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598224" ref_strand="+" ref_description="SGN-U598224 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13676415|dbj|BAB41198.1| (e_value=2e-29) hypothetical protein [Glycine max]; (*ATH) AT5G17910.1 (e_value=2e-17) | Symbol: None | expressed protein | chr5:5927404-5932724 FORWARD | Aliases: MPI7.8, MPI7_8; ">
      <seq>ggactattcaaattgatctatatttcaaccctggaattttacaattgtgtttgaattgatttgtaaaggtgggatttttattctttgtcttgatctagaagggaattgattctagttcatatttttgacaagaactaggtgggtacagtgaagaaaaattagatattcagatcccatttctgaggaagttgcttcattttaggtattgggttgtgaaggattgaagttaaaatgaggaaagctgtaatctttactattgaagtgtgttataggacagttaggaatcatccattccttgtgggtatgttgtgtttcttggtatttctgtacagatcatttccttttgtgttttcaatcttggtgtctgtctcccctattcttgtttgcactgctgcactgcttggaactttactaagttatggtcagcctaatatacctgtatttgaatgggaagaaaacacaactgatcatattgtgcctttggaaacacgagatgctattcttgttgagagtgacaatagttacttcaccgagagatatagtgatcaagagagggataaagtagaccaatcaacgcgtagtgaggttcataggggtaaaagatttggtgatcattctgctctaattggtggagttttagttggtggagttactgggcaagtggcaagggagttttatgagcataaaaatgaagacaaatttagtgatgctgaacttacggaggaccagtattctcctacttcgaagggtaatgaagagagcgttgagtttgataatgacaaatcagttgattcctttgattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="55465" stop="56952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55765" g_stop="55797" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55798" i_stop="55881" i_length="84">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55882" g_stop="56652" g_length="771"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="804" r_length="771" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U598224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U598224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55765" e_stop="55797"/>
          <exon e_start="55882" e_stop="56652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACTATTCAAATTGATCTATATTTCAACCCTGGTATGCATTTTCTTTTCTTAATTCTCTTTGTTTAATCTATTATTGTTAATTCAATGTGAAAATCTTTTCTGGGTTTGTTTGCAGGAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCT</genome_strand>
        <mrna_strand>GGACTATTCAAATTGATCTATATTTCAACCCTG....................................................................................GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U562856" ref_strand="+" ref_description="SGN-U562856 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>aaagtactccttaagtaaaccatactatgtgggtgatgtgaaggatgctgaagagaacaagttattcaccattacaaaggcaccccagcgatctcagtgattccaaagtaagttctgttcttgaaacagagtcacagggctcaattgaagatctggaatacaagaacctcaatgaggaagatgtagaagacaagaacctgaatgaagaactggaaggcaaagacctgacagatgaacatatcttcaaggaaccaaagctgatatctaagatagagcatgctaccgaggatattggacatggaagccaatcctccgaagaagtagaatgtttggtcctaggtgcatctgataagagggatattgaactcgatgacactgatgttacactaccaaatgtggaaaatcatcatgatttggtaccaaatgtattccatgaagaaacagcagccagctccatggtacttgatccgtctaaaatttgttcaaagtcagcaacatctgaacaaaaatgcagtagtcagtcaagctcctcctcctcatcagaagtaggtgaaaagatctttgctgacaaagtattggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57174" stop="58321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57459" g_stop="58021" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="582" r_length="564" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U562856" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U562856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57459" e_stop="58021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAG-GAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTTGCTGACAAAGTAGTGGTGA</genome_strand>
        <mrna_strand>ACCATACTATGTGGGTGATGTGAAGGATGCTGAAGAGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTTGCTGACAAAGTATTGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565183" ref_strand="+" ref_description="SGN-U565183 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>tggtgagatcaagttcagaggaatcgacgtgccatgttgaaaccatctctgagcatccttcgccgaatgtgtcagatctgaacatcacaagcagttcagtggaggagagttcacatttggaacctatttatgatgccagtcctccttcaattaagaaaaatacttcttcctcctcaattgcttcagatctgcttctagaatctgaaaccgggcatgcctctgagagggaacctgtggcaaataatcgagacattgagaagtccattccgacgaaggaacaaatattttcatcagcagattccaaagaattgcggctgagggaggcaataactgacaaacatgagcttgatgttgcaaaggtggagatatcaaacaacgatgaagtctttggcagtgcaagtgctcttccggtgcctgtagcagatagtcagacatctattgattcgaagtcttccacaaaagaggcacctgtttcaacggagaaagcaaggaccacagaaagcttgaatgtgccaaaagttcaagaaagttctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="57716" stop="60845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58016" g_stop="58476" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="461" r_length="461" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58477" i_stop="60469" i_length="1993">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60470" g_stop="60545" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="537" r_length="76" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U565183" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58016" e_stop="58476"/>
          <exon e_start="60470" e_stop="60545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAAGTAAGTAATTAGTATATGTCCTATTCAGTACTATAAATTGCAAAAACTTTTATCATGCATATTCTTTAATCTCTTTAAAGATGAAGAGAGTTATCATGCATATCCTTTTACAGATGAACAGAGTTATCATGCATATTCTTTAATCTATTTGGATTAAATTATACCAAGATCTTAGTTTTTATCATGTTTTATATACTTTATTTAGCTTTTCTCTTAAAAATGTTTCTTTATTTGAGATAATTTAAAATTTATTTTTATAAATCTTTTTTTAATTCTCCATTACTTAATCCAATTATGTTTAATGGCATATGATGATAAAAACCAAAGACTAAGTTGGATGTGAAGTGATGAAGTATAGGCCAAAAGAACTGTTGGAAACAAATCATGTTCCAATTAACCTAATATATTGTTTAGATTATACATCTCAAATTCTTTGAATCTCAACCATAGTATTCATCCAATCCTACAATTCGAGATGCTTTTGTTAAACTGGTTGAATGTGATCTCTAAAGTCGACTGGTAACTCATAGTCTCATACTGGTAGGACTGAAAATAACTCTCTCTCCTCCAATCCTATTTTTTCTAGTGCTTATCTACTAGTTAAACAGTACGAATGGAGTGACAAACTCCGTGAGTTCGGAATTTAAATAAGTCACAAAAAAATAAAATTGACCAAAATAATCCTTTATTTTAGAAAGTAACTAAAATAGGCTTAGTGGAAGAAAAAATTTCATTTCCAATATTCCAAACATTTTCCGTTAGTCCCATAACGTTTATAATTTAATATATAATGGAACTATTTCTTACACTTTATTTATATCTTCTACACAATCTAAATCTAGAAAATTATCTTGTTCAGTTATTGGTTTAGGTGTCCATTTTTTATTCATTGTATCTTTAAATATTGAATATATTTGTATTCTATTTTAGATATATTATCTATTAATTGATCTAAGTCGGTCAATGATTTATCACTCTCCAAAATTTACTTGTCCTTGTGATAAAAATGAAGTAGGTATTTTCTGACTATAATCATAATAATACTATTTATACCCCATTCTTTTATAAATTGGTGAAAGAAATATATGATATTTGACATTAATTGAATATTTAGAATTGTGTTTGGGAGGACAATTATAATAAACGGTATTTCCATCATGTATAATTTCGCCATCCTAATAAATCGAAACTCTAACTTTTGGTTAAGAAGACATTATTTTGTGATTGAAATGAAGAATAATAGAAAACTAAAGATGTTGAATGTGCTATGTCTGAATGTCTTTAAATAGAGCTTGGATGAGCTTTCAGAATAAAAAAAATAAAAATACATAGTGTAATAACTTTTTTATTTTTATGATATGTCAAATCAATATAATTGTCTGACAAACACTACAAAAACATCATAAGGAGAGCAAAACTTGAAAAATATTCCTCTTTGTAAAATGTAAGTTTTTCTTCCGCTTTATAAAGTGCAAGAAAAAGTTGAATTTTCAAAGGGCAAGAAAAACTTACAATTTATAAAGTGTAAGAAATAATTCCGTTATATATTAGAATATACTCGTTACGGACTAACGGAAAACGTTTGGAATATTGGATAAAGTGGAATTTTTTCTTCCACTAAGCCTATTTTAGTTACTTCCTAAAATAGTGGCTTATATTGGTCAATTTTATTTTTTTGTGGCTTATTTAGGTTCCGAACTCTTCAATTGAAGAGGTTTGGGACAATACTCCTACTTATGACAGTCATCATCATTCATAATCAAAGGCCAGCTAATGAATTAAACCATAATTATAGCTATTTATAGTAACTACAAGAAAAGCTAAGATATGACTAAAATGGCCGTTACACCTCAAATTCTGATTCCTTTCTTGCTCTCAAAGCTTTTGATGTTAGGTTTGAAACATGGGAGTTATCAGTATAGTTCAACCTGTACTATGTCTTCGCATTTATTTGGATTAAATGAGTCTAAGTGAATCTAATTATGATATACAGGAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAAGTTCCTCCCA</genome_strand>
        <mrna_strand>TGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGGTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGCCAAAAGTTCAAGAAAGTTCTCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598334" ref_strand="+" ref_description="SGN-U598334 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349932|emb|CAO39831.1| (e_value=3e-27) unnamed; (*ATH) AT2G44710.1 (e_value=1e-12) | Symbol: None | RNA recognition motif (RRM)-containing protein | chr2:18439794-18444207 FORWARD | Aliases: F16B22.20; ">
      <seq>atttaccttcctcatggattgaagaaaaagtgcgagactactttggcaaatttggtgaaattgagagtgttgttcttgcaaaagatcttccttcctcaaggagaaaagattttgcctttgtcaattatataagccgcgagtctgctcttgcgtgcattgaaggattcagtcatgaaccagctaatgaaagcggatccaaggtaagcattaaggtatctcttgctaaacccatgccaaagagtaagcaaactaaacgtgtaacccttcctactagaagggaacctccggagaagaagaaaatacaggaccattccatcttgaagaggcatgaacccagcagaaaggtaaactacatgagaagatatgatgaggatcacagagttgaaggatcttcttctacaaccaatgaacttctgcacctcttgagacaacaagggccagttcgtcagctccattccggtttgaacatgggtattaaccatcagtactcgttatctggaagcaagcgaccgttttcagctgtagtacataatccacatcgtatggattccagtggagtttctagagtgcacttagaaagctctttccctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="81717" stop="76905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81417" g_stop="81218" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="200" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81131" g_stop="81020" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="312" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78889" g_stop="78731" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="471" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78730" i_stop="77437" i_length="1294">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77436" g_stop="77384" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="524" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110">
            <donor d_prob="0.458" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77273" g_stop="77205" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="593" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U598334" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81417" e_stop="81218"/>
          <exon e_start="81131" e_stop="81020"/>
          <exon e_start="78889" e_stop="78731"/>
          <exon e_start="77436" e_stop="77384"/>
          <exon e_start="77273" e_stop="77205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAGGTTTCACATTGTTTCTATAATTTACCATTAAGTAATTGCAAAAGTTGCTTTGCTTATGATTATTTTCAATGTTGATTATATTTTAGGTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATTGTGAGTTTTTTGAAACCTATATTTGTCAATTTGATGATAGTTTGGTATAAAATTGTTTGCTCTGTGGCATAAAACCTTGGTTGATCCTTATTTTTTTGTAAGAAAAGAGAGAAGAGATTCTTGGGGAATGAATTGCTTGATTATTACTTTTTCAGATCAGGTAAACAACTTAATTTCATAAATGGAAGTCAAAATTAGCCATTAACAAGAAGTACACCCAAAAGTTTAAAGAGCCTACAAAATGATATAGTTCACAAAGAAAAAGCCCTCAATCATCTATTCATCCCGGGACTACATTGGTGCACCAAAAATAAATAAGGGATGAGAAACTACTTCTCAGCTGCTCAAAATTCATTTCTACTCATTCTGAAGCCCTTTTATTTCTCTCTCTCTCTCAATGATCCTCTTCAGACCTAGATAACAACTTTTAATGGCGTGCTCTTTCTTGCTTGATTATTATGTGAAGTAGGTTGGAATTCAAACATGTTTATGAGTCGCCAATTAAGTTAAATACATATTCTTCTACTTAGATAATTACTAGCATTCTAAATGGCTACCCTTTGACCTTTAAATTTTCAACCAGCAAAAGTGGATATGACTCTGTTTATTAATATTAAGACATTTGAATCTTCATTAACATCTGAATATTATGATGTTGTATGAGGATACAAATACTAAAAATTAAGATCATTTATTTTTTCAACATTTGAATGTTTGAATCTTATCTTTATTGAAAGTTCATGAATATAAAATTGAAAAGAAAGTTCATCTAATACTATATCAACGAACTGTAAGAAAGATATATTATTAGGGTGGCAGGTGGCAGTGATTGTTGATAATGCTAAATGGCGGTGGGTTAGTTGGGTGATTGTGGTGGTTCTGGGTGGTAGGTAATGGTAATGATGGTTGATAATAGCGGTTACTGTTGGTGGTTGGTAATGGCAATCGATATAATTGAGGATGATGTGGTAGTGATTGATAGCGGTGGTTGGCTATATATGCCAATAGCATGGTGGTGGTGGTTGTGCTGATGATGGTATATAGTGGCTACTGACAGAGACGAGTGACTGGTGATTTGGGATAGTGATATTTGTGGTTGAGATGGTGGGTTTGTGCATGATGGATGGTGTGTTGATTGTAAATGGTAGCTAGTTGCGATGATGGCTGACTATGTTGATTGACAGTAATGGTAATTGTGGTTGAGATGGTAGTTTTGGGTGGTAGACTGGAAGTTGATACTTGATAGTTGGGGGCGGCAGCAATAGTGGTTAGTGATAAAAGTGGATGGAGTAGTGATGAAATACGTTCTTTGCTAAACCCTTGAGTCACTAGCATCTTAATAATATCGAGTTTTTTTTTTTTGAGGTCTTAATCATTCAGATCTATTCAAAGTCATTAAGTGGTTATAAACGAAAAAACACGCTTAATGATTGAGTTTTAAATGATTAAGATTTAGACCTAAAATTTAGACCTAAAAAATGAGGCCCAAGTAATTGAAACATAGTAATATTCTTTTTCCTCAATATTATCTTTTCTTTTCCTGATGGAAAATCCTTTTAACTTGTTGCGTGTCCTATAACCAAATATTTTTACTAGAGTTGGGTATCTTGTTGCAGTAATTAAGCCCATTGAAACATTATTGCATTAAGTGAATATGTCATATTGGGCTCCAGCAAATTAGGACCAGTATTTGGTAGAAACTAACATAATATTTGAATATAGTTACATTTTAAGAGCATTTCTTTTATTGTTTATCTTTAGATGAATTTGAGGTTGTCATGTTATTGGAAGTTATTGACACCGTAACACTGTAATATTAGCAAATTTGGCTAAAGCTGGGATCTTCTGTCAGAATCTATGTTCAAAGGCTTTTTAAAGTTCTTTTAGATGAGGTAACAAAATCAAAATATATAAAAATCATTAACACTAAGTGTTGGAAACCAAATGAAGTGTTTACAACAGTGGATTGAAATCACAAGTATAAATGAAGGCTTTTGTTGCTTGTGTCAATTCTTTTACGGAAAGAGGTTGCTTTCTAAGCAAACATGACTCCTATGGAGTAAAACAATTGTGTCTTATAGCAGTCGTGAGTCTCGTCTTTAATGAGATATTCCTTTATCGTGGTTATAGCCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGGGTAATTTCATATATTTCGCTTCTAACATTTTCTCTTCCTTTGCATCATGTCATTAGACATAATTTGTTGGCCTAGCTTTCTATTAAAATGTTCTGCTAGTTGTAATGTGCTTTATATTTTTATTAAGCTAAAGGTTAGTGTAATGTACTTGTTCATGTACTTTTGTACCTCCTAAACTTATTGCTGTTGATATTAAGGGAATAGAAAGCTACTTTGAATACAATGGTGTGTTAGGGTAAAAGAAAAGGTCTAAAAAGCATGAGAATCTGCAATATGTCATCTGCAAGGGACCATGCTACAGCTTAGTGCCGAACGATCTCATGAACAAGGAATTTTATTCCTAAGTAGAACCCCTAGGCTGGAAGATGTGTCCATCCAATATTATGTTGGACATGAAGTTTATTATGCTTTTATCCCCTCTCTTATTTATTCGTCAGAGATTGCTTTAGTGATGTCGGTTAATATGTCCTTCAGTAGTTAAAGGTATTTTGGTGAAGAGGGTCAAATGCTTCTTTAGTTACTCTAGCAGTGAGAAGCTACCAATTAAAGCGAATTTCCTTGAAGGGAAAAACTCTAAAATGAGGCCCTTTTTATTAAGGGGTTATTCGGGCCGGTTTGCGTGTACCTACGCTAGTATTCTATCTTATGCTTGCTACCTTCTGCCAACACAGGTACTGGGTAACTTTGTCCACCAACACTTGCTATATGGAAAGAGATCTCCCAGCATTTTCTATTGGTGCTTGGATTTGAGTTTTGATCTCCCATGGTTTTTCCTACTTCATTGGCCCATTGGGTCCTAAAAAATGGACTTTAGAACCTCAGTTTTCTTTTAAAACAAAAGAAAGAAAGCAGGAGCTTGAAAGTAACGATTAGTGCCTAGCAGTGTTATCAAAAGCAAAAAGCGCAAAGAAGTTCTAAGGTCTGTTGGGTTGTGGGCTTTAGTGAAAAAGGCGCAAAGGGAGAAAAAAATATAAATATATATGTTTAGTTCAAGAATAATATTACCCAGTTGGAGTTGGGAGTCACCAAGGGAACAAAATATGAAAGAACCATGGTGCAACCGTGGGTATGGGAGTTTGGGGGTTCTGTAACCTGGTAAGGAAAAAGAGATAAGAGGAGTATTTACCTTTTATAGTTCTTATGCTTTCTACTTTGTTGTATATGTTTTATGTTTTTAATGGTTATTCATTGCCAGAGCTCTGCACTTCGGATCCACCCCACCCCACCCTTCTTTTTCTTTCTTCCTGTTGTATATAATTGATATCTGTTTTCTATTATTCTTGTCCGAGATCAGGTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTAGTAAGTTGCGAATTTGGTTGCCTTTATGCTGCTTTTATATCCTTATGGCTCTTTCACTTCTTATGTAGACATATACTTATCTCTGAGGCACCCTCCTTCTGCCTCTGCAGGTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</genome_strand>
        <mrna_strand>ATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG......................................................................................GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA..............................................................................................................GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602141" ref_strand="+" ref_description="SGN-U602141 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157349932|emb|CAO39831.1| (e_value=3e-42) unnamed; (*ATH) AT2G44710.1 (e_value=1e-24) | Symbol: None | RNA recognition motif (RRM)-containing protein | chr2:18439794-18444207 FORWARD | Aliases: F16B22.20; (*SWP) sp|P11940|PABP1_HUMAN (e_value=3e-11) Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1; ">
      <seq>gttcagctgaaaatgaggagtcaaagaaacatagtttacatccgatggaagttgagaaggctgagtgtgttagtgagtttggtgcaactgaaaacacattagaggcttgcatgttggaatgcaaagatagtgttgttgagaatgataatatggattcccttgaaacacaaattgtagttcttgattcagaaaaaaatagtcttaatgtttctactagtgataatgtggattcgagtaaggatcaaaatttggttcagttgggagaggaagggtacagtcaaggcagagaggaaacaaaggaagctgtggatactagtctgaggttgaatgaaggaattctattgagtggggaaatggaggcattagaacggaaaaagaggcggaggacagagatattcattgggggattaggcaaggagtcaaaggaagaggatattaggagtatctttggtgaggttggtgaggttgtggatgtaagattgttgataaatcatgaaacaggaaagaacaaggggtttgctttcctccggtatgcttctgctgctgatgcaaagaaggctgtagaaagatattccaaagttgagatatctgggaagcaatgtcgtgtatcccttgctgagggtaatgacacaatatacctgggtaatattgacaagaaatggaagactgaagatgtgattgatctactgaagaaggctgaattgaaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="83587" stop="81591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83288" g_stop="82705" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82704" i_stop="82095" i_length="610">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82094" g_stop="82005" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="674" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81928" g_stop="81891" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="711" r_length="37" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U602141" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83288" e_stop="82705"/>
          <exon e_start="82094" e_stop="82005"/>
          <exon e_start="81928" e_stop="81891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAGGTAATGTCATTTGGAATTGCTACCTGTAGTCTCCTAAGTAGAACAAAGGTTTGTTTAAGTAGTGCAGTTAGTTGGTCGGTTGTTTGTCTACACGTACAGCTAATAAAATAAGTATGTGGCAAGATTCATATTGATTTTTTGACAGACTTATCAATTTTCTGGATCCTAAAGAATATTTTAAGTTTTAATTGATCTCTGTGCATCAAAAATTTGGTGGAAGCTTATGTAACAAATTTGCATACTCTAATATAGGTTAGAAATAGGTCTATGATATTGGGAAGTAGGTTCTTTGAACTCATTTTTGGATACCTAGCTTGAAATGGATATGGCTACAAATACTCTTTTTTTTCTTTGTTGATAAGTGGTATGGACATTTCTTACTAGTTGCTGTATCCGTACAAGTAATAAACACTACGCTATGAGGAATAATCATGCTGTTGGTGGTGTATTCATCTTTTGATTTTCATATTACACCCAAAATTTAAGGCATGGAGAATAATATATTTTAGCTAAGTTTACTGGTGTAGTCATGCTGGATAGATAATTGCAGTTTCTGCAGTAAGCTGATGTATGCGGTGGACTAATGCATTTATTTGATTTTGAAACCTAGATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGATGTAAGCTTTACTGTTTGCTGCTGATTATTGTAATTCCCCTGGGTTAAATGACTTCAAAGAGTTTATTTCTGGACAGGTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATAT</genome_strand>
        <mrna_strand>GTTCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT............................................................................GTGATTGATCTACTGAAGAAGGCT-GAATTGAAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570724" ref_strand="+" ref_description="SGN-U570724 Tomato 200607#2 [26 ESTs aligned] (*GB) gi|157349947|emb|CAO39846.1| (e_value=3e-103) unnamed; (*ATH) AT5G32450.1 (e_value=6e-101) | Symbol: None | RNA recognition motif (RRM)-containing protein, various predicted proteins, Arabidopsis thaliana and others | chr5:12096848-12098803 FORWARD | Aliases: F18O9.60, F18O9_60; ">
      <seq>gctcagctgtcacatttatatcttctcctcttccactcaggctcacagcaaaacaaagctgagagatacggatttcaaactcaataatgcaggaggtaagaacagtacgagtgggtaatgtatcagatctggcagctgagagagaggttcgcgagttcttctcgttttccggcgagattgaccacattgagattcgccgagaacaaggacaatccaagactgcctttgttacatttaaagatccgaaagcgcttgaaattgctttgttgttgtcgggagcaaccatagtggatcagattgtaagtataaagcaggcagaagactatgttccatcatctgagactcgggaagtcaggatagttgataatgctgtgaatgttgctggagaaagttcttctccgcttgctgaggccaaacctacttctcctagcaatggaagggtgaacgggaaagtatatatcagtaaagcccaagatgttgtctcaaatgtgttggcgaaaggttcagctatcagacaagatgcaatgaataaagccaaggcatttgatgagaaacatcagctaagagccactgcatctgctcgagtcatttcctttgaccgaagagttgggctaacagaaaagcttacggttggaatttctgttgtaaatgagaaagttaaatctgttgatcaaaggcttcaagtgtcagataaaacgatggctgcagttatggcagcagaacggaaattgaatgacacaggatcagcagtcaaatcaagcaggtatgttaatgctggagctgcctggctgaatggtgctttcagtaaagtagctaaggcagggcaagttgctggtacaaaaacgagagaaaaatggaattttgcgttgtcaaatttgacagcaaaggatccttctattgttgcctagatcatagacgaatgtatattggagttgctaagttgcctctgtcgaatagcttgggattccaaatactatttccttgcacatctagaaattgggatctggtatgcagattgcagatcgtctgtgtcaaattcaagcaagtttcatctgtgatgtgatttttctgatagttaatttttcttcccattttattgtggaatgtggagtggtgtggtgtggtgtggtgaatacaactatacgagattatgtaattcttttgtttgtaagccttcaaattcacgatagttaggagcttgtattgatatcatatctttcttggtgaggctgaattttattagagagattttcagactcttgatgtttatattacgatgacatccagcatatattccactcttagataagtttattcatattaatcatttcatgttgttggtcaatttacgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="89256" stop="94960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89555" g_stop="89646" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89722" g_stop="89828" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="199" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89912" g_stop="89987" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="275" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="90872" g_stop="90943" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="347" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91068" g_stop="91130" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="410" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="91898" g_stop="92250" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="763" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243">
            <donor d_prob="0.884" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="93494" g_stop="93617" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="887" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94196" g_stop="94660" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="888" r_stop="1353" r_length="466" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U570724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1352</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89555" e_stop="89646"/>
          <exon e_start="89722" e_stop="89828"/>
          <exon e_start="89912" e_stop="89987"/>
          <exon e_start="90872" e_stop="90943"/>
          <exon e_start="91068" e_stop="91130"/>
          <exon e_start="91898" e_stop="92250"/>
          <exon e_start="93494" e_stop="93617"/>
          <exon e_start="94196" e_stop="94660"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAGGTGAGTTCTCCATTTTTCTTCAACTGTTATCTCTTTCTCTTCTCTCAGTGATGAATTGATTTTTTGTACTTTCAGGAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCGGTCAGTAGTTTCACTGGTATTTGAGTTTTGGATAATGTATATTTGAGCTTAATTATTTCACTGATTTTTGCTGTTGAGTGCAGAGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCGGTAATTTTACTCTCTTTTTTTTTCCAAAGTAATTCTATTTCTAGTCTCTATTTCCATAACCGTGTATGCTTTTATCATCCAAGCGATTCCTACTTCCTGTGCACCGTGGTCGAGAATTACAGAATCAGCTACATGTAACTCTTTAAATTACAATTGATTGTAACTTGGGGAAAGGATAAAAAAAAAATGCTATAATCTGTTAAACTACAATGGAATGCAATTTTAGTTAAAACTTAAGTATTAAATCATGTTTTTTGTTGGTGGAGTAAATTATTTAGCGGCATCGCAGGAAGACAGTGTGTAGGAGTGGAATAAACTCACAGAAATTTAAGGGGTGAAGGAACTAGGAAATAAATTTAAGACTCTGTTTTCTTTAGCTAATCGTTTGTCTGATGGAGAAAAAAGTATTGGTGGATTTTAACGTTAAACATGAAATATAGGCTCAACTATACAGCATGTATTTTTCAGCATTTCTTTTGGTAATTGAAGGGTTAACAATTTTTCCAACTGTTACATGTATCTTTTTGGGTTTAAAAATAACCTGATGATATTATAAATGTTTGATATAATTTATATCTTGATGAAATATAATGACTAATAAGTGTATATATAGTTACATCCTCTCCTAATCTGCTTTTAGCTTTTGGCCAATGACTGATGAGGCATACTTGACAATGTTCCTATTGATTGACTTATTCAATACACAGAATGAACGAATGATTCTCCTAGTTTTAAATTACTACGGTACATCAAAATTTTGATATGCCATTGTTGTTTGAAGAATAATAAGCACATGGAAATTGGTTTTCTGTGTATTTACTGCTACTGCTTTGTTGAATTGTTTGCTTGTGAGAAGTACCCTTCTGATTCTACTCATTTTGCAGGGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGGGTAACTACATAGACAAGTGTGGAAGTGTTATCTCTATTCATATAATTGCAAATATCGGTTATTGAAGTATAAAAATTAGGAATATCGATATTGACAATTCATTTAGTCTACTCATTGCTTCCAGGAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAGGTAATATAGTAATCCCTCCCTCTCTCCCATTTTATGTGACACTTTTCGGATTTCGAAATTCAAACAAGTCTATCTTTGACCGTAAATTTTTCATAGATCTTTTAAACATTTTAAATTATCAATTGTGGTGACTTATAGTACTTTTTATGTAGTTTACAAATATATAAATTCATTCAAAAGAATTAAAGATTCCATGCGCAAATTTTCGGTCAAACTTAAACTACTTGACTCTTGGAAAACGAAAAGTGCCACATAAATTGGGACAAAGGGAGTAAATCAAATTGGTGGATAATTCTTCCTTCAAGTTATTAAAAAGTTGGGCATCTTTTTTTATTTTTTGATGACAAGCGAAATCCATAGCCGCTACCCTTTGGGTGTGCACGGGGTAAAACCCATGCTTCTATGCAATAGCTCGCAAACCACACAAGAGAGGTAACCCGCACCAAGCAAGCCTGGTGCGACCCTGCTTTCGCTGGCAAGGGGTTTGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCCAAACCACTGGGCCACTTGGATATCTTTTGTCCACAAGAACATAAAAATTGTTGTCTCTATACAGATCATTTAGATATGGAAGAACCATTGCATGCATTTTGTGGTGTAGGATTCATGTATTATGATCTGCGCTTTGCAGGCATATATTTGTTTTCGACTGTGTACTTATTGTAGGCTCTTTTGGCTTTATAGTAATCTGCATTACTTGTATAATCTCTTGACACTTGTCTCCATAAGCAGGCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAGGTCTGGATGCTTTAAAAATGTCTGTGATTCAAGTCTGTTTTTTAACAATGCAGTTTTCTGTACTTGTTGCTGCAGTTGGTTCTTAGAATTTCTAGAATATTACCTGCTCTCTTTTGTCCCTATCCGCTTCTATCTATTGAGATAATCTTCTAAGAGAATCTTGCATGCTGTTAAGTGGCTATATGAGCTGAATTATCCTATATATTGAAGTAGAGAAAGGAAGGGAAAGTTTCAAAGTTCTATACTCTTGTTTGATTTGTTAAAAGAAGAGGAATTAAAGCAAAAAGGATGACCAGTTTTCCCCTTGGGGCCACTTATTTAAACCGAGACTTTGAGAGAAGGAATAGCACATATTTTCTTTTCCTTGCAACATTCTGATCGAAGTAAAGAAAAGAAAGAAAATGGAGTCCTTTCACATTCCATGTTTTTCCTCTTTATCATTTCCCTTTATGTACTCGGGTTTACACCTTATCTCATCGAACAGCAGAATTAAATTGCTTTATAGGATGTTTCTTGTTGATTGAACTTCTGAGAGAGTATTTGGCATTGAAATATTTTTTCTCATTGAACAGAAGATTAGATTGCTTTATGATCAATGTTGAACTGAATGACTTGTTGATTTGACATCTGAGAGAGCATTGGGCATAGAATCATTTTTGTTTTTATTTTTTTGAATAATTTCGAGTTTCATCACCCTGTTTGCTGCTCCATTTTATGCAATATCTAGTATGCGGCCTCACAACATCTCCTTAAACATTTCCAAACTATTCATAAATTGTGGGTCCTGCTATCATCATCAATAGCTTTCCATTGGATAATTAAAATGAATATTTTCAACTTTTACGTTCTGCATAACTTGAGCTACTGATCCATTAAGTTGAAGTTGAAAATTAGGCATGTTGCTCCTACTCGCTGAAGAAGTATTAAAGTTCAAAAACTTCAGTTGGTTGAGGAGGCAAAGATTATCTTGATTTCATCTTTTTAATGAGCAACTTATAATGTGTATGGCCACTCATTCTGCGTCCATTGTGCATTTTTCTTTAAAAGGAGAGAGACCAAGTACAGTGCATCTCCGAAGTAAAGATGGAATGAGGGGGAGAACAACCATGCTTTAAGATAGAATGTGCATGACCACTCACTTTGGTTTAAGCACTTGTACTCTAGCAAGCGAGCTAGCAAGCACAAAGTGTTATTATTATATTACTAAAGCTCTACATTTCCATTATTTTGGAGGTGATCTCAGGTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAGGTATGCTCTTCCTCACTTCTCTTTTCTCCCCAATGTATCTCTAAGTCTACCTTTTGACTTCTATCTATCAATTTGTATTCATTATTCTATTTGGCGTAGGTCACTAACGATGATAGAATAACAGATGAAAAGAAATATTACGATAGGTGGGATTAAAAAAATGAGTACCTTCAGCAAGAATCATGCTGCTACATATGCTCTTTGGTGCCCCCAAAAAAATTAAGGAAGGTTGTTTTTGTTATACTATTCTGGCTAAAATTTATGGCCAGTAAAAATGTAAAAGTAAAACAAAACGAAGTGCAGGAAATCTGTTACTTGACATGCCTCTTTCATGTAACCAGAGGAAGAAATGAGAGAACAATTAGACTCTACGCAAGTCAGTAAAGAGCATATTTCTTAGACAACCTAAATACTTTTGCTTGGTAGGAATGTCTCTGTAACATTTTAAAATATAAACTCACAAAGTGCTATCCTGAACAGTTGCACCATGTTGGATGGCAAAGTGCTCCCCCGCCCCTCTGCCATTTCTTTCTTTTGTATTTTTCCTGAAATACTGAAACTGAAGTTCCGTCTTGCAGGATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGA-TTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</genome_strand>
        <mrna_strand>GCTCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG...........................................................................GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG...................................................................................AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG............................................................................................................................GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U568847" ref_strand="+" ref_description="SGN-U568847 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtttctttcactcttcagtgctactgctttgcataaaaaatgcattttctgcagaagtaatgtgtgagtccaagtccaatgctgttcttcttaccttttggtgtagtcacaatatcagtcctgtaccctcgtttcacctaattagatgattttgatgtgtactacattcatatttttgatgaagtttgatgtacattacattttcttctcttgttaaaattacattacattaatgcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="98944" stop="99783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99243" g_stop="99483" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U568847" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U568847" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99243" e_stop="99483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</genome_strand>
        <mrna_strand>GGTTTCTTTCACTCTTCAGTG-CTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGAGTCCAAGTCCAATGCTGTTCTTCTTACCTTTTGGTGTAGTCACAATATCAGTCCTGTACCCTCGTTTCACCTAATTAGATGATTTTGATGTGTACTACATTCATATTTTTGATGAAGTTTGATGTACATTACATTTTCTTCTCTTGTTAAAATTACATTACATTAATGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584378" ref_strand="+" ref_description="SGN-U584378 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157354062|emb|CAO46629.1| (e_value=6e-85) unnamed; (*ATH) AT5G13010.1 (e_value=4e-81)  Symbol: EMB3011 | RNA helicase, putative, similar to DEAH-box RNA helicase (Chlamydomonas reinhardtii) GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain | chr5:4122581-412886... ; (*SWP) sp|P34498|MOG1_CAEEL (e_value=6e-116) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1; ">
      <seq>aaatacataaaaaaaattaaaaaaacataaaataaataaaaaataaaatttcctggggggggggcccgggcccttttcccctgaaggtgtactttcataaaatgggtatggatgctctgcaagtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagctggtagaactggcccaggaacttgttaccggctttatactgagaatgcgtatgagaatgaaatgctgcaaagtcccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctcaaaattcagaacctgttggattttgattttatggacccacctcctcaggataacatccttaactccatgtatcagttgtgggtattaggtgcacttaacaatgttggggatttaacaagccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttgatgggagaacaactagaatgtttaaatgaggttctgactattgtttctatgctttcagtgccttctgttttctttagacccaaggatagggctgaggaaagtgatgctgctaaggaaaagttttttgtgccagaatctgatcaccttacactgcttaatgtttaccagccaatggaaagctaatcaatacagaggggactggtgtaatgaccactatttacaggtcaaaggtttacacaaggctaaggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcgtacttccataatgcagctaggctgaaaggagttggggaatatgttaattgcaggaatggaatgccttgccaccttcatcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgagcttatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactggttggctgaactggggcccatgtttttctccgtgaaagattctgatacatcaatgctggaacataaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagttgcgtaaagtacaggctgaagctgacagacgaaacaaggagaaggagaaggaaaagagagcaaaagaactgcaacaggtttctatgcctgggttgaagaaaggctcaactacttatttacgacccaagaggctcggtctgtaaattacactttttgctgtagttgttagatatctgttgtgatgattcttgtcccagtgcaaaaaccacgtacaattcttagcctatctcttagtcatcctcaaattaatttagtggattggagattcaaagaagtaaaaattcaaaaaaaagtatacagtgaacaaaagcatgtataactccttcatatggttatcatctttaccccttgcagccctgaatttgacgtgtttgtataagttttttgataaaacagttacattttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="101792" stop="99752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101524" g_stop="100052" g_length="1473"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="1544" r_length="1475" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U584378" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1473</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U584378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101524" e_stop="100052"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAG-CAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGA-TGGAGATTCAGAGAAGTAAAAATTCAAAAGAAAGTATACAGTGAACAAAAGCATGTATAACTCCTTCATATGGTTATCATCTTTACCCCTTGCAGCCCTGAATTTGACGTGTTTGTATAAGTTTCTTGATAAAACAGTTACATTTTCTCC</genome_strand>
        <mrna_strand>GCCCTTTTCCCCTGAAGGTGTACTTTCATAAAATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAAGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACACAAGGCTAAGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATTGGAGATTCAAAGAAGTAAAAATTCAAAAAAAAGTATACAGTGAACAAAAGCATGTATAACTCCTTCATATGGTTATCATCTTTACCCCTTGCAGCCCTGAATTTGACGTGTTTGTATAAGTTTTTTGATAAAACAGTTACATTTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U601337" ref_strand="+" ref_description="SGN-U601337 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157354062|emb|CAO46629.1| (e_value=4e-80) unnamed; (*ATH) AT5G13010.1 (e_value=3e-76)  Symbol: EMB3011 | RNA helicase, putative, similar to DEAH-box RNA helicase (Chlamydomonas reinhardtii) GI:12044832; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain | chr5:4122581-412886... ; (*SWP) sp|Q17R09|PRP16_BOVIN (e_value=8e-27) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38; ">
      <seq>gcctcgtgccgcttctacaggaggtgctctgtctgaggacggaggagatgatacaaatggtgcctctgaagatcagaatgaagagattactgaaagtatgcgtttagagatggagtataattcagatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgaaggggatggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggccaaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaggttatcacagctcactgcagacaatgctcaatgggaggaccgccagcttttgagatctggagctgttagaggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttcttgttcacgatacaaagcctccctttttggatggaagaattgttttcaccaagcaagctgagccgataatgccaataaaagacccaacttcagatatggccataatttcacgtaaaggctcagctctagttcgggaaatacgtgaaaaacaaaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="106666" stop="104051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106471" g_stop="106455" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="37" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106454" i_stop="106341" i_length="114">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106340" g_stop="106243" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="135" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="106242" i_stop="106089" i_length="154">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="106088" g_stop="105980" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="244" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="105979" i_stop="104778" i_length="1202">
            <donor d_prob="0.880" d_score="1.00"/>
            <acceptor a_prob="0.669" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="104777" g_stop="104600" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="422" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100">
            <donor d_prob="0.796" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="104499" g_stop="104351" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="571" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U601337" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U601337" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106471" e_stop="106455"/>
          <exon e_start="106340" e_stop="106243"/>
          <exon e_start="106088" e_stop="105980"/>
          <exon e_start="104777" e_stop="104600"/>
          <exon e_start="104499" e_stop="104351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGCTCTGTCTGAGGTACTGCTTTATACCAAAGTTATCTTCCTTAGTTTATTTTTTGTTTGTGGGGTGGGGGCTTAATTGGAATATTAAAAGAAGGATTTTTTTCACCTGTGCGTTACTTCCTTCTAGGACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTGGTAATTGTCTTACCATTTTATAGTATCTACAGTATTATGAGTCTTATGACCCCTCTCTCAGAAGTCTATATGTGCTTACTATGTTTTCTTTTTCTCTTTCTAGTAATCAGTTTTGTTATTTTTGGTAGAGCCAATTATCACTTGCATTATGCAGGTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTGGTAAGCACAGAGACTACAAAAGCCTTAAATCATGATTTTGGCATATGTTTGCATTTGTGTGTTTGGGGGAGAACTAGCATACTCTCGGATGTTACTGGGACTCGGTGGAAGTTGTAGCAATATGAATGACTGGTGCTTTAAGCTGATTAGAAAACTTACTTGATGGTTAGTGGTTTAGCTTGCACTTGACAACTCGTGTCACTCTCTGCATAACAATCTGTTGTGTCATAGCTTGCTGTATTTCGAGGCATTATGGATTTATGTTTCTGCTTTGCGATCCCTCTATCATCAATACTGATGATGAGAATTAGATGAATTTATATAATTCTCTGGTGCGAAGGGAACTAGAGGGCACATATCCTTAATTGCCGTTTGATGCATGAGCATGTTTCACTATTGTGATTGTGTCAGACAATGTGCTTTTCCTACTGATTGAATTCCCTTTGTGTAGACCTGCTGTCTCTTTTAGAGATGTATTTTGTATTATCCTATTTTAGAGCATTGTTGAACATCTGAGAGGTCACTAAGACGTTTGAACAGAAAAGATGGAAGACCTTGCACAGATATTATCCTTTTGACCCTAAACTGAAATTGCAGTATTTTTCTTTCTTTTACATCCAGATGTATCTCGATTTTGCACCTCTGTGGTGCCATCATCTGCATAACATAGTTGCTTTCGATTAAAGAAAAATGAATTTTACATCTGAGAGGTATTTAAATTATAACATGTTGTTTTCCAATGCAAAACTTTGAAACTTGGTTTGAAATTCAGGAAATTATAGGGAATTGCGAGATCAAAATAGTAGTCATTTATAGCCGATGAGCTGGTTCTTCTTAGAATCTGAGCTAAAATGACTATTGGGGAGAGAACACAGAGATTTACTGGCTAAGTCAAGATATCATTTTAATTTAACATCAAGAGCTTCTTGGACCTTTCCTGATGAGACAGTCTGTTCTCAGTGGGTTAGCATAATATCAAGAACTTCTGTAGTCTATCAATTGTAACTATACTATGTAGGATTGGTGATGAGATAGTCTGTTCTCTGTGGGTTGGCATAATATCAAGAACGTTTGTAGTCTATCAAACGTAACTATACTGTGTAGTTAAGGATTGGTTAGATACAATGAACACTAATACAATGCATGTATGGTCTGCCATTGACGTTGTCTTTCTCTCTCTCCCTGCCCTCCACTTGTAACAGGTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACGGTACATCTCTATGATACACCTCAGCTGACAAATTTTTTCTGGCTTCTCAAAAATGTTTGCTCTATTTTTTGTTTGGATATCTTACCATTTATTGGGACAGATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</genome_strand>
        <mrna_strand>GAGGTGCTCTGTCTGAG..................................................................................................................GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG..........................................................................................................................................................GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG....................................................................................................ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAAGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565413" ref_strand="+" ref_description="SGN-U565413 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|118483091|gb|ABK93455.1| (e_value=8e-36) unknown; (*ATH) AT3G56850.1 (e_value=6e-32) | Symbol: None | ABA-responsive element-binding protein 3 (AREB3), identical to ABA-responsive element binding protein 3 (AREB3) (Arabidopsis thaliana) GI:9967421 | chr3:21057320-21059495 REVERSE | Aliases: T8M16.180; ">
      <seq>ggtaatggtattggatatccatttttatacatagaattttgggtctatgaatattaatttattaatagtattctctgtatggattgagtttcagtttctggggttttgttctttttataggtgaatgttgctgcatgcaacctaatggattctgactgattcttccatttttacagtttactgttgagaacgttgacacattgatattggtgaatggtaattcaagaaatgggatctcgggggggaggtgaagcaaaggcaaatgctttagctacgcaaggatcactctacagcctcactcttgatgaagttcggaatcaattggggaattgtgggaaaccactcaatagcatgaaccttgacgagtttgttaaaactgtatggactatcgagtctaatcaagaagtggtggggggaaatgattacgggccagtgcagcaaggggcttctcagcatcatccatcgagcattacaatgtccagggatctcagcaagaagactgttgatgaggtgtggcaagatattcagcagggggtaaaaatagataatgttgataagagaagccaggagaggcaactaactttaggtgagataactctggaggatttcttggtcaaggctggagtgattgccgagtcgacccaaggcaagagaatttcgggtttagtttttggggttgattcaatgtcattgacacagcaagctcagtggacgcactatcaaatccccgcaatgcaacaggtaccagaacagcagcatcaacaacaacagcagaatataccaccagtttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="+" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="112461" stop="114397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112761" g_stop="112943" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112944" i_stop="113486" i_length="543">
            <donor d_prob="0.937" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113487" g_stop="114097" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="794" r_length="611" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="+" ref_id="SGN-U565413" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U565413" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112761" e_stop="112943"/>
          <exon e_start="113487" e_stop="114097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTAATGGTATTGGATATCCATTTTTATACATAGAATTTTGGGTCTATGAATATTAATTTATTAATAGTATTCTCTGTATGGATTGAGTTTCAGTTTCTGGGGTTTTGTTCTTTTTATAGGTGAATGTTGCTGCATGCAACCTAATGGATTCTGACTGATTCTTCCATTTTTACAGTTTACTGGTATGGTATATGATCTTCTCTACCATTGATCTGTTTTCTGTTTTCCCCCTTTTATATATATGTTGCTGTTTCTTTGAATCTCTGTTGCATGGCTTTTATGATAGGTAAATGGTTTTGATTCTTTTTCATTTTTGCTTTTTTTTTGTTTTGTTTTGTGTGGGATTCTCGTAGAACTAATGTGAATTATTGGGCTTTGTACATTTTCAAGATTACAACTTTACTTTCTTTTCTGTGGTGCATAAAATAAAGGGGTTTGAAATTGATTTCTGGATTGGCTGATGTTGCTAGTTGTGAATCACAGGGTTTTGTACATTTTCAAGATTAGGACTTTAGATTTCAGTGTGGTGAATAGAGGGGTTTTCTGGATTGGTTGATTGGGCTTTGTGCATTTCAAGATTAGGACTTTAGTTTTCAGTGTTGTGAATAGAGGGGTTTTTCTGGATTGGTTGATTGGGCTTTGTGCATTTCAAGATTAGGACTTTAGTTTTTGATGAGGTGAATTAAGGGTTTAGGAGCTGATATCTGTATTGGTTGATTGATCAGTTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</genome_strand>
        <mrna_strand>GGTAATGGTATTGGATATCCATTTTTATACATAGAATTTTGGGTCTATGAATATTAATTTATTAATAGTATTCTCTGTATGGATTGAGTTTCAGTTTCTGGGGTTTTGTTCTTTTTATAGGTGAATGTTGCTGCATGCAACCTAATGGATTCTGACTGATTCTTCCATTTTTACAGTTTACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586029" ref_strand="+" ref_description="SGN-U586029 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|157347639|emb|CAO18276.1| (e_value=9e-62) unnamed; (*ATH) AT3G56820.1 (e_value=2e-61) | Symbol: None | expressed protein | chr3:21050790-21052724 REVERSE | Aliases: T8M16.150; ">
      <seq>gacattttcctcttccggtaaccagaaccaccaccaacttccagatctccaccgccccatttcagaatcagggaacccaaatctcaagtttgatgaactcactcaaatccttcctcaagaaaccccatgctttcccttttctcctatcccttttcctttttctcacatgggtttcactcagattccaacatccttcaacttctaaccctcaacgagaagagtggcatgctaaggttcaatctgggtccgatcaaaatgctaatcttgtcaggttttcagcttcttcttcttcgattgccaaagataaacgtggatggttgatcaatcctatttcccttgcccttgattctgccatttcaggtggggcagcagtttgtgcttcagttcatttgggtgagatcagatctggtggtcttagaggcaaccacagacaccatacatgcaatgagacatttgttatttggggagctaagacagtattccgggtggaaaatgatgcggtagaaaaaggttacgcggaagtgataattggtgcagatgaagttgctgttgcagtcagcccccttggaactgcccatgctctagtaaatgttgatccggggcgaagtacatacttcatggggtgccaggatagcgtaatcaactacaatggctcaacgactgattttaatgtatggaaggatctataagttcccattgttatattctcatggttgcgccaataaggcaactgaagtttaatgcgtttgcatcaggctggtaattttttcttgcagatgagggttttgaagggtgtgattagtctagctagtgtagattaggaaacagtgtacataaggcatagctgctaatcattggcctttttttgttctttcccttttgggttttatgacaaaaagatgtgagctcagacatatatctactggatacagcttgcctgtccgacaggctttatatatgaaagcagtatttaagctcttgaaatttagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="119043" stop="116128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="118744" g_stop="118386" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117774" g_stop="117650" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="485" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715">
            <donor d_prob="0.416" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116934" g_stop="116428" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="992" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U586029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>991</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="118744" e_stop="118386"/>
          <exon e_start="117774" e_stop="117650"/>
          <exon e_start="116934" e_stop="116428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCA-ATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAGGTCTCTCTTTACCCATCTTTCTATCGTCAAATATTATTGAATATGCCTGATCCTAACCTTATAAATGGAAGCTGCATTACTGTCCCTTCTCCTCGAGTCTTATTAGGTTCATGTGGATTGATGTAGAGTTATTAAAGCAAGAAAGAAAATTGAGCATTTTGGGGGGGAGATAGCTAGTTAGAAACACCTAAAGGGCAAGGAAAGCTTTGTTTTTGTGAAGGATTTATGTATGCCTATCTTGACTATTTTTGGCATATTAAAGCTCAGTTGATTGATTACCTATTTGAGGAAAAAAAATGTTTAGTTGATTGATTTATTATAAGTGTTAGAAATTTAAGAAAATGTGCAAGTCTAGAATTGATTTTCTTGTAAAGATGAGGAGGTTAATCTTGTGGGGTTCCTAGCTTTTTTTGTCCAGTGTTAAGCGTGGGTGATTGCTGTTGCTCAATGTTGTCTTGCCCTTGATTTTAGTTTCTTACGGCAAGATGAATTTAAACATTTCATACTCCAAGAGAAAAAAAAAGGAAGAAGAAGAATATTTTAAACGAATTGTATTTGTCATTCTTCAATTGATTTTTCCTATTGACAAAGGGAGGTTATGCTTGGTTCAGGTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGGGTACTTTTGTAGTTTTGCCATAATTTTCAAATAAAGCAAACACTCTCAGACCTTGAACATTACAATGTATGCTAGAGTTTCATTCGTTAGACTTATTCTGATTAGGTGTATTTCTTGAATTCGAACCCTAAGCCATAATCAAGCTTTCGTTTTAAGTCCTTCAAATTTTCAAATAAAGCAAACATTCTCAGACCTTGAACATTTACATTGTATGCTAGAGTTTAGACTTACACTGATTTGGTGTATTTCTTGAATTATACCCTAAGCCACAATCAAGCTTTCTTTTAAATCCTTCAAAATCTTCAGTCTAGCAAAAATCCTCAACTTTTTTAGTTCACAGTAAGCCATAATTATTTGCTCTTTGTAATTACATTTTTCAGTACCTAAGATATGTTTTGACGACCATGAGCATGGGCGATTGGTTTTATGTCTCAAATCCTTCCTTCCCTCTTTGTCCAATTTTTGGGGGTTCTCTACATTTATAGTCTCTCTTTACTCACCATTGAAGCAGGCATTCTGCTCATGCTTTGGAAGAGTTCTATGTTATTCAATTTTTGCAGCTAGCTCCTCTAAACCTTCCAAAGCATGAGTTGCCATTATTTTTGAATCAAATGAAAGGGAAATGAAGATTAAATCATCTCGTCTATTACACTTCGCATAGGCAAGTTGATTATATAGTATCAAGTCCTACACTTGATTCACTAATTTCTTACAGGTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</genome_strand>
        <mrna_strand>GACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAGATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600076" ref_strand="+" ref_description="SGN-U600076 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157353685|emb|CAO46209.1| (e_value=9e-79) unnamed; (*ATH) AT5G13740.1 (e_value=1e-68) | Symbol: None | sugar transporter family protein, contains Pfam profile PF00083: major facilitator superfamily protein | chr5:4432309-4436671 FORWARD | Aliases: MSH12.21, MSH12_21; ">
      <seq>cgtttcacttcacaagcataacaaaataaaacaagataaaaataactttcaagaggctgttgaaggatctccagatgaatcaaatggattaaatgtgtctcagaacattaatccttctgaacgcagagcccctagctctcaaaaaagccttctgatgaattggcccttaatgtcttctattattgtctactgtgtattccagctccacgatatagcctatttggagatattttcactctgggctgttagtccaaggacccttgggggtttaagcttcacaacttctgatgttggacaagttcttgccatcacaggcattggtttgctactctttcagctgcttgtttatccactggtggaaaggattactgggcctgtcatgatttctcggatcggtgcagttttaagcatacctttattggctagctacccatatatagctttattaactggttttggcctctccatagctctcaactgtgcatctatgttaaagaatattctctcggtatcaattacaactggcttactaatcatgcagaatagagctgtgtcccaggagcaaagaggagctgcaaatggcatttcaatgtcctcaatgtcgcttttcaagacaattggccctgcagccgggggctcattattgtcctggtcacaacggcgtctagatgctgatattctgcctggtgatcagttggtgttctttgttctcaacgccatttgagtgctcggcctacttctgaccctcagaccctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0248A13-s8ivJ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C10HBa0248A13.2" temp_strand="-" temp_description="C10HBa0248A13.2  AC233129.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0248A13 upload_account_name:manual">
        <position start="122574" stop="119553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122278" g_stop="122054" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="226" r_length="225" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="122053" i_stop="121929" i_length="125">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121928" g_stop="121841" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="314" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121840" i_stop="121711" i_length="130">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121710" g_stop="121625" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="400" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121624" i_stop="121525" i_length="100">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.756" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121524" g_stop="121417" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="121416" i_stop="120928" i_length="489">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120927" g_stop="120883" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="553" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="120882" i_stop="120789" i_length="94">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="120788" g_stop="120700" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="642" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="120699" i_stop="120073" i_length="627">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="120072" g_stop="120029" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="686" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="120028" i_stop="119925" i_length="104">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119924" g_stop="119853" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="687" r_stop="758" r_length="72" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0248A13.2" gen_strand="-" ref_id="SGN-U600076" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0248A13.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122278" e_stop="122054"/>
          <exon e_start="121928" e_stop="121841"/>
          <exon e_start="121710" e_stop="121625"/>
          <exon e_start="121524" e_stop="121417"/>
          <exon e_start="120927" e_stop="120883"/>
          <exon e_start="120788" e_stop="120700"/>
          <exon e_start="120072" e_stop="120029"/>
          <exon e_start="119924" e_stop="119853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAGGTAATGTATCTTTCTTTGAAAAATCATTTTAATGGAAAAACGGGAAATCCAAGGAACCTTCTGGAGAATTGATCCTTAGCTTGAACAAACTTGTAAATATATCTTACTGTCGTGTGCTTTTTCAGATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAGGTAGACATTGCTCAAATCTTTGCAGGACAATTTGCCTTGTGTTTTCTGAACCTTTTTAGGCAGACTATATTGGAAAATTGTGCATCTTTTAATCAAAAAAATACTATTAATGTTTTGCATCACTCTACAGGCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCAGTATGCCCCTGACTAAACTGACATATCACTTATATAACTACCACTTCCTATAAAGTTTCTTTTTCACTGTTAGATTATATTGAACTTACTTATCTTTCAGGTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCGGTAAGAACTTATCCTTAAATCATTGAGTTCTTCAGCTTCATGAAGTTATTGATGATAAAAATTCAATGTAGTGCTTTTGTGAATATCCAGGAATAGTTACTTATGTCCTTTTTTGTTTTGTTTTTCCCTTTTTGAATTCGAAATGTTTTTACTCCCACTGTTGGCGTGTATGCAGTATGATTCACAAAAATGATGGTGCATGATGAGGAGGAGAAAGAAATATATGACCTATAATATTTTGCTTCATTCATCTTTGCAGCTCTTTTCTCAAGTTTATGTTAGCTTTATGCTTTGTTACTCAATATCTAAGGTTCTTCGTTGAATGTAAATGAGTTGTATCTTAATTTTCTGGTTCATGATATCTCCTATTTCCTATACATGAAAATTATGAATAATATATCTGCTCAATTAACTTTGTTTGGCTTTTGCAGTTTCAGTATCTCGAAGTTGTTTGCTTGGTCTAAGTGGTTATTTTTCATATTTGATCAGGTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTGGTAACTACCTTATACCATAAGCACTTTTTTTCCTTATTATCCATATAACTGTGATCAGTAATGTTCATGTGTGAGTAAAATGTTTTAACTTCAGTCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATTGTAAGTTGTTAATTTCTCTTTATCATCTGCTGATCTTCAAGGTCATTCTGTGCTTGTCACTTGAATTTGAACCTTGTTTGGTATTTGAACATTGGGTTGAGGCATTTTCTCTTCCCGTTCTTACCCTGAAAAGGCAGGGACAGCTTATGTTCGTGAACCGATAAACCTCTTTCATCTAACCTAGCCTCCTCCATCCCTCGGGACTAACAAGGGGTAGTACAGGAGTACTCACCTTTCAGCCTGATCTTAGCTGTGGACGAACCCTTAGGTTTTGGGGAAATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCAACACCATTAAACAAACTTAGTACCATATACATGTCATGCAAATGAATGTAATGATATCTCTTATAAGTACTTCATGTTTGGCCAGTAACGATGCAGGGTCTGAGATTAACTTGGTATATTTGAAAATGCTAGAGTGGTGTAGTGATATAATCAGATGTTCATTTCAGTTTTAGTGAATGGGGGATTGTGTCTATTGGAAATGTATATGATTTTTGTCTAACTCGAAAGTTAAGGTCTACTGTCTATCAATCTAGACGAATAGATTGACAAGATTATGTATCATCACAATTTTATGATCTGCAATTTATGCAGATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTGGTAAGTTAATTACTCATTTCTGATGGCCTACTTTGATGCACTTGAAATACAAAAGTTAAGCCCAACAAACTAAACATAAAGGCATTGTGATGTTTGTAACACAGGTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCCTCAGACCCTTTC</genome_strand>
        <mrna_strand>GTTTCACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATTAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG.............................................................................................................................ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG..................................................................................................................................GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA....................................................................................................GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG..............................................................................................TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG........................................................................................................GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTTGAGTGCTCGGCCTACTTCTGACCCTCAGACCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14561" PGL_stop="12712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14561" e_stop="14364"/>
            <exon e_start="13955" e_stop="13461"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.695" acc_prob="0.996" e_score="0.879"/>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="14561" e_stop="14364" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.695" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14363" i_stop="13956" i_length="408"/>
          </intron>
          <exon e_serial="2" e_score="0.919">
            <gDNA_exon_boundary e_start="13955" e_stop="13461" e_length="495"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14561" stop="14364"/>
              <exon start="13955" stop="13461"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591658" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13876" stop="13686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAACAGATTTCACTGAACAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAG : AAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATG</gDNA_template>
            <first_frame> E  Q  I  S  L  N  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  :  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M </first_frame>
            <second_frame>  N  R  F  H  *  T  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R :   K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S   </second_frame>
            <third_frame>   T  D  F  T  E  Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *   : E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14438" stop="14364"/>
                    <exon start="13955" stop="13587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>441</number_coding_nucleotides>
                  <number_encoded_amino_acids>147</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NQSVDRLSLCDLLLFFSSLKLKKFEKKMTNSSQTNAGTVSAATTTVAHNRSNAALAPAEKPAKFSGVDFKRWQQKMFFYLTTLSLQKFINENVPVMSDETPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKPQKNSGML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14544" e_stop="12712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="14544" e_stop="12712" e_length="1833"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14544" stop="12712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13876" stop="13686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTAAATCACTGAAATTTTTTTTTGTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTATTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTAGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTCTATTTTAAATTTTTTCTGCTTCATGTTGTTTCTGTTTCTGTACATTAACTTCATAAATACAAATTATTGTAAGAATAACAATCTTAAGAAATTTAACAGTTTCTGTATTTGAGGTTTCTAGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAATTCATTCGATTAACGACTAAAAGAACATAAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTGTTCTTTACTTTAGTATTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTGCACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAATACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTTTGGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATTCATGATCTCCTTGCTGAAGGATTAATTGTGAATGATGCTTTTCAAGTGGTTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAATACAAACGCAAGGAGATGACTGTTGAAGATCTCACAGTAAGGTTGAGAATCGAAGAGGATAATAAGGCTTCGGAAAAGAATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAGCATTTGGTCCAAAAAGCAATCCTCCTAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTTCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCTGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCATTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGACAAAGTCCTATTAAAGATGACATCAGACAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAGTTCTGACCAAGAATGGATTTGAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAG</gDNA_template>
            <first_frame> Q  T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  K  S  L  K  F  F  F  V  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  I  L  Q  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  R  F  I  L  G  E  I  N  P  *  P  R  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  F  Y  F  K  F  F  L  L  H  V  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  Q  S  *  E  I  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  T  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  N  F  I  V  K  S  E  T  V  C  V  K  I  C  S  L  L  *  Y  F  K  Y  L  I  Y  L  P  F  V  T  E  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  C  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  D  V  L  L  S  H  Y  V  E  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  A  R  *  S  V  Q  C  V  Q  Q  C  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  K  K  F  I  V  A  K  F  L  D  F  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  N  D  A  F  Q  V  V  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  Y  K  R  K  E  M  T  V  E  D  L  T  V  R  L  R  I  E  E  D  N  K  A  S  E  K  N  L  E  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  L  L  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  L  M  N  A  G  V  L  R  R  T  R  K  R  R  I  K  Q  T  W  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  L  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  T  K  S  Y  *  R  *  H  Q  T  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  L  N  V  Y  L  F  L  I  K  *  *  *  A  K  M  I  C  M  *  E  K </first_frame>
            <second_frame>  R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  L  N  H  *  N  F  F  L  F  L  C  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  V  L  S  W  E  K  L  I  H  N  L  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  S  I  L  N  F  F  C  F  M  L  F  L  F  L  Y  I  N  F  I  N  T  N  Y  C  K  N  N  N  L  K  K  F  N  S  F  C  I  *  G  F  *  R  L  K  P  L  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  T  K  R  T  *  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  V  L  Y  F  S  I  L  N  T  *  F  I  C  H  L  *  Q  K  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  A  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  M  F  F  Y  L  T  T  L  S  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  E  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  P  Q  K  N  S  G  M  L  *  K  R  N  T  K  Q  K  M  P  E  *  R  N  S  L  W  Q  N  F  W  T  L  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  F  M  I  S  L  L  K  D  *  L  *  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  A  R  R  *  L  L  K  I  S  Q  *  G  *  E  S  K  R  I  I  R  L  R  K  R  I  W  S  K  F  C  *  R  R  F  H  K  I  K  E  K  K  E  S  I  W  S  K  K  Q  S  S  *  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  P  G  F  *  E  G  Q  E  K  E  G  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  *  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  I  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  *  Q  S  P  I  K  D  D  I  R  Q  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  S  S  D  Q  E  W  I  *  M  C  I  C  F  *  *  S  S  S  K  Q  K  *  Y  V  C  R  K   </second_frame>
            <third_frame>   D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  *  I  T  E  I  F  F  C  F  S  A  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  Y  S  S  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  *  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  L  F  *  I  F  S  A  S  C  C  F  C  F  C  T  L  T  S  *  I  Q  I  I  V  R  I  T  I  L  R  N  L  T  V  S  V  F  E  V  S  R  D  *  N  L  Y  G  F  L  L  Y  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  L  V  F  *  I  L  N  L  S  A  I  C  D  R  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  R  C  S  S  I  S  L  R  *  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  M  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  C  K  M  I  C  T  M  C  T  A  M  Q  N  L  K  R  T  L  G  C  F  R  K  E  I  Q  N  R  R  C  R  N  E  E  I  H  C  G  K  I  F  G  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  S  *  S  P  C  *  R  I  N  C  E  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  I  Q  T  Q  G  D  D  C  *  R  S  H  S  K  V  E  N  R  R  G  *  *  G  F  G  K  E  S  G  V  N  F  V  E  E  D  S  T  K  L  K  K  R  K  K  A  F  G  P  K  S  N  P  P  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  A  N  E  C  R  G  S  K  K  D  K  K  K  K  D  Q  A  N  L  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  F  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  D  K  V  L  L  K  M  T  S  D  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  V  L  T  K  N  G  F  E  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13294" stop="12713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGKESGVNFVEEDSTKLKKRKKAFGPKSNPPKKFNGNCFNCGKHGHRANECRGSKKDKKKKDQANLAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPAFTDEKLFMANSAVAKVEGTDKVLLKMTSDKVVTLNRVSYVPELRKNLVSIPVLTKNGFECVFVSDKVVVSKNDMYVGK</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13641" stop="13270"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>369</number_coding_nucleotides>
                  <number_encoded_amino_acids>123</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVQCVQQCKTSKELWDALEKKYKTEDAGMKKFIVAKFLDFKMIDSKTVVTQVQELQVIIHDLLAEGLIVNDAFQVVAIIEKLPPLWKDFKNYLKYKRKEMTVEDLTVRLRIEEDNKASEKNLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="35239" PGL_stop="36536"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35239" e_stop="35509"/>
            <exon e_start="36307" e_stop="36536"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.956"/>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.956">
            <gDNA_exon_boundary e_start="35239" e_stop="35509" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35510" i_stop="36306" i_length="797"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="36307" e_stop="36536" e_length="230"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35239" stop="35509"/>
              <exon start="36307" stop="36536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U597953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGAAGCACAAATAATCAATAGTAAATATACGCAGCAAAAGAAGCCAAGATCGAGTCCAAGATCGAGTAAAATGGGTCAGCCAAGTAATCAAGAAAATAGAGTTATTTGTCAAAGCCAAAAATAATATATTAAAGGTATAAGTTGATACAAATAAGGAAAACCTTAAATATATTATTAAGGAAGGAAGTTGTATATAATAAGGATTGTACTTTAAAAGGAAATCTTTGCTTAATAATAACTTCCTTACCTTATCTGATAAGGACTGAAG : GCAAAAGGAACTCTATAAGAAGAAGAAGACGTTGATGAAGAATACGACGACTTCACGCAGAGAACAAGGGAGAATTATTCATCAAATTGAAGTCTTCAAGGTTGATAGGATTGCTACGTTTAAAACATTCTTGAGTAAGAAGGTTTTATCGTGTAGAACTATTTGTCTTGTTTTTGTTCTTAATTGTAGTTTACAGTTTATTGTACAAAGGGTGGGTTTGGCTCTTTGTA</gDNA_template>
            <first_frame> T  R  S  T  N  N  Q  *  *  I  Y  A  A  K  E  A  K  I  E  S  K  I  E  *  N  G  S  A  K  *  S  R  K  *  S  Y  L  S  K  P  K  I  I  Y  *  R  Y  K  L  I  Q  I  R  K  T  L  N  I  L  L  R  K  E  V  V  Y  N  K  D  C  T  L  K  G  N  L  C  L  I  I  T  S  L  P  Y  L  I  R  T  E   : G  K  R  N  S  I  R  R  R  R  R  *  *  R  I  R  R  L  H  A  E  N  K  G  E  L  F  I  K  L  K  S  S  R  L  I  G  L  L  R  L  K  H  S  *  V  R  R  F  Y  R  V  E  L  F  V  L  F  L  F  L  I  V  V  Y  S  L  L  Y  K  G  W  V  W  L  F  V </first_frame>
            <second_frame>  Q  E  A  Q  I  I  N  S  K  Y  T  Q  Q  K  K  P  R  S  S  P  R  S  S  K  M  G  Q  P  S  N  Q  E  N  R  V  I  C  Q  S  Q  K  *  Y  I  K  G  I  S  *  Y  K  *  G  K  P  *  I  Y  Y  *  G  R  K  L  Y  I  I  R  I  V  L  *  K  E  I  F  A  *  *  *  L  P  Y  L  I  *  *  G  L  K  :  A  K  G  T  L  *  E  E  E  D  V  D  E  E  Y  D  D  F  T  Q  R  T  R  E  N  Y  S  S  N  *  S  L  Q  G  *  *  D  C  Y  V  *  N  I  L  E  *  E  G  F  I  V  *  N  Y  L  S  C  F  C  S  *  L  *  F  T  V  Y  C  T  K  G  G  F  G  S  L   </second_frame>
            <third_frame>   K  K  H  K  *  S  I  V  N  I  R  S  K  R  S  Q  D  R  V  Q  D  R  V  K  W  V  S  Q  V  I  K  K  I  E  L  F  V  K  A  K  N  N  I  L  K  V  *  V  D  T  N  K  E  N  L  K  Y  I  I  K  E  G  S  C  I  *  *  G  L  Y  F  K  R  K  S  L  L  N  N  N  F  L  T  L  S  D  K  D  *  R :   Q  K  E  L  Y  K  K  K  K  T  L  M  K  N  T  T  T  S  R  R  E  Q  G  R  I  I  H  Q  I  E  V  F  K  V  D  R  I  A  T  F  K  T  F  L  S  K  K  V  L  S  C  R  T  I  C  L  V  F  V  L  N  C  S  L  Q  F  I  V  Q  R  V  G  L  A  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35508" stop="35509"/>
                    <exon start="36307" stop="36535"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQKELYKKKKTLMKNTTTSRREQGRIIHQIEVFKVDRIATFKTFLSKKVLSCRTICLVFVLNCSLQFIVQRVGLALC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="45987" PGL_stop="48611"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45987" e_stop="46273"/>
            <exon e_start="47261" e_stop="47322"/>
            <exon e_start="47873" e_stop="47960"/>
            <exon e_start="48064" e_stop="48125"/>
            <exon e_start="48219" e_stop="48315"/>
            <exon e_start="48457" e_stop="48611"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.745" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.979"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45987" e_stop="46273" e_length="287"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47261" e_stop="47322" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.835">
            <gDNA_intron_boundary i_start="47323" i_stop="47872" i_length="550"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47873" e_stop="47960" e_length="88"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="47961" i_stop="48063" i_length="103"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48064" e_stop="48125" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.745" acc_prob="0.939">
            <gDNA_intron_boundary i_start="48126" i_stop="48218" i_length="93"/>
          </intron>
          <exon e_serial="5" e_score="0.979">
            <gDNA_exon_boundary e_start="48219" e_stop="48315" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48316" i_stop="48456" i_length="141"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="48457" e_stop="48611" e_length="155"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45987" stop="46273"/>
              <exon start="47261" stop="47322"/>
              <exon start="47873" stop="47960"/>
              <exon start="48064" stop="48125"/>
              <exon start="48219" stop="48315"/>
              <exon start="48457" stop="48611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAAAAAGAACCTCAAGTTGAAATCTGAAGGTGGAGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG : GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACA : TCGTGAGTTTACTCACCGTGTGAAGTCAGTTTCCATGTCTAAGTTTACTTCCCAAGAAGTGGAAGCTCTTCAACAGGGTGGTAATCAG : CGGGCCAGAGAGATATATTTAAAAAGTTGGGACCCTCAAAGTCAGTGGCTTCCTAATAACAG : CAATGTTGATAAAGTGAGGGAATTTATAAAGACCGTCTATGTTGATAAAAAATATGCTGGGGCGCAGTCCTCTGATAGACCTCCTAGAGATATCCAG : AATTTGAGAAACCACGACGATGATATGAGGAGAGCAAGTTCTTATCATTCCTATTCTCAAAGTCCACCATATGACTTTCAGTATGAAGAACGACGTTATGGGAAAAATGCACCAGCACTCACTAGAAAGCCAGGATCAGACCGGGGACTTTATGA</gDNA_template>
            <first_frame> E  K  K  E  P  Q  V  E  I  *  R  W  R  E  R  E  S  C  F  M  P  L  S  S  F  L  L  G  Q  N  S  K  S  I  T  *  N  P  S  F  F  Q  S  I  S  P  K  V  V  W  G  N  S  I  F  Q  L  G  E  I  N  L  Q  A  *  V  A  G  E  K  K  R  G  T  R  R  *  *  E  G  F  S  S  S  L  P  I  A  N  A  S  T  A  I  A  W :   V  P  S  M  C  A  Q  T  F  G  P  L  S  A  *  H  A  A  E  Y   : I  V  S  L  L  T  V  *  S  Q  F  P  C  L  S  L  L  P  K  K  W  K  L  F  N  R  V  V  I  S :   G  P  E  R  Y  I  *  K  V  G  T  L  K  V  S  G  F  L  I  T   : A  M  L  I  K  *  G  N  L  *  R  P  S  M  L  I  K  N  M  L  G  R  S  P  L  I  D  L  L  E  I  S  R :   I  *  E  T  T  T  M  I  *  G  E  Q  V  L  I  I  P  I  L  K  V  H  H  M  T  F  S  M  K  N  D  V  M  G  K  M  H  Q  H  S  L  E  S  Q  D  Q  T  G  D  F  M  </first_frame>
            <second_frame>  K  K  K  N  L  K  L  K  S  E  G  G  E  R  E  R  A  A  S  C  L  S  L  H  S  S  L  D  K  I  Q  N  P  L  L  K  T  L  V  F  F  N  Q  F  P  P  K  L  F  G  E  I  Q  F  F  N  W  G  K  *  T  Y  K  H  E  *  Q  E  R  R  R  E  E  R  E  D  N  K  R  A  S  Q  A  P  S  Q  S  Q  M  H  Q  L  Q  *  L   : G  S  P  V  C  V  H  K  L  L  D  L  C  L  H  D  M  Q  R  N  T  :  S  *  V  Y  S  P  C  E  V  S  F  H  V  *  V  Y  F  P  R  S  G  S  S  S  T  G  W  *  S   : A  G  Q  R  D  I  F  K  K  L  G  P  S  K  S  V  A  S  *  *  Q  :  Q  C  *  *  S  E  G  I  Y  K  D  R  L  C  *  *  K  I  C  W  G  A  V  L  *  *  T  S  *  R  Y  P   : E  F  E  K  P  R  R  *  Y  E  E  S  K  F  L  S  F  L  F  S  K  S  T  I  *  L  S  V  *  R  T  T  L  W  E  K  C  T  S  T  H  *  K  A  R  I  R  P  G  T  L  * </second_frame>
            <third_frame>   K  K  R  T  S  S  *  N  L  K  V  E  R  E  R  E  L  L  H  A  S  L  F  I  P  P  W  T  K  F  K  I  H  Y  L  K  P  *  F  F  S  I  N  F  P  Q  S  C  L  G  K  F  N  F  S  I  G  G  N  K  P  T  S  M  S  S  R  R  E  E  E  R  N  E  K  I  I  R  G  L  L  K  L  P  P  N  R  K  C  I  N  C  N  S  L  :  G  P  Q  Y  V  C  T  N  F  W  T  F  V  C  M  T  C  S  G  I  H :   R  E  F  T  H  R  V  K  S  V  S  M  S  K  F  T  S  Q  E  V  E  A  L  Q  Q  G  G  N  Q  :  R  A  R  E  I  Y  L  K  S  W  D  P  Q  S  Q  W  L  P  N  N  S :   N  V  D  K  V  R  E  F  I  K  T  V  Y  V  D  K  K  Y  A  G  A  Q  S  S  D  R  P  P  R  D  I  Q  :  N  L  R  N  H  D  D  D  M  R  R  A  S  S  Y  H  S  Y  S  Q  S  P  P  Y  D  F  Q  Y  E  E  R  R  Y  G  K  N  A  P  A  L  T  R  K  P  G  S  D  R  G  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46103" stop="46273"/>
                    <exon start="47261" stop="47322"/>
                    <exon start="47873" stop="47960"/>
                    <exon start="48064" stop="48125"/>
                    <exon start="48219" stop="48315"/>
                    <exon start="48457" stop="48609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>633</number_coding_nucleotides>
                  <number_encoded_amino_acids>211</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSINFPQSCLGKFNFSIGGNKPTSMSSRREEERNEKIIRGLLKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMSKFTSQEVEALQQGGNQRAREIYLKSWDPQSQWLPNNSNVDKVREFIKTVYVDKKYAGAQSSDRPPRDIQNLRNHDDDMRRASSYHSYSQSPPYDFQYEERRYGKNAPALTRKPGSDRGLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46023" e_stop="46273"/>
            <exon e_start="47261" e_stop="47676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.972" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46023" e_stop="46273" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.972">
            <gDNA_intron_boundary i_start="46274" i_stop="47260" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="47261" e_stop="47676" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46023" stop="46273"/>
              <exon start="47261" stop="47676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U588639" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGAGAGAGAGAGCTGCTTCATGCCTCTCTCTTCATTCCTCCTTGGACAAAATTCAAAATCCATTACTTAAAACCCTAGTTTTTTTCAATCAATTTCCCCCAAAGTTGTTTGGGGAAATTCAATTTTTCAATTGGGGGAAATAAACCTACAAGCATGAGTAGCAGGAGAGAAGAAGAGAGGAACGAGAAGATAATAAGAGGGCTTCTCAAGCTCCCTCCCAATCGCAAATGCATCAACTGCAATAGCTTG : GGTCCCCAGTATGTGTGCACAAACTTTTGGACCTTTGTCTGCATGACATGCAGCGGAATACAGTAAGTGTATCATATTGCATGCTCTTTACATCTTTAGTCGCATAAGTTGTTAGTCCAGAAATAAAGTAGGTAAAGCTGCTGGGGGTATTCAAGAGGGTTTCTTCTTTTCAGGATTGTAAAATGCATTGGCACTTCTATGTTCTAACTACAGCGGAATGCATATGCCAAAATTTTACCTGATATGCATGCAGCTAAGTAGTTAATTTTAGCTACTACTGGATTCAATCTGTCCGAAATCTATTGGACTAATGTTCTGAAAAATTAGTTTGGCTTTTTGTGATAAGAAGATGTCCATCCTTTTTCTTATTATTTCATAAAAAGGAAAAGGTCCATCCTTGTGTTAATTTTTTAACT</gDNA_template>
            <first_frame> R  E  R  E  S  C  F  M  P  L  S  S  F  L  L  G  Q  N  S  K  S  I  T  *  N  P  S  F  F  Q  S  I  S  P  K  V  V  W  G  N  S  I  F  Q  L  G  E  I  N  L  Q  A  *  V  A  G  E  K  K  R  G  T  R  R  *  *  E  G  F  S  S  S  L  P  I  A  N  A  S  T  A  I  A  W :   V  P  S  M  C  A  Q  T  F  G  P  L  S  A  *  H  A  A  E  Y  S  K  C  I  I  L  H  A  L  Y  I  F  S  R  I  S  C  *  S  R  N  K  V  G  K  A  A  G  G  I  Q  E  G  F  F  F  S  G  L  *  N  A  L  A  L  L  C  S  N  Y  S  G  M  H  M  P  K  F  Y  L  I  C  M  Q  L  S  S  *  F  *  L  L  L  D  S  I  C  P  K  S  I  G  L  M  F  *  K  I  S  L  A  F  C  D  K  K  M  S  I  L  F  L  I  I  S  *  K  G  K  G  P  S  L  C  *  F  F  N  </first_frame>
            <second_frame>  E  R  E  R  A  A  S  C  L  S  L  H  S  S  L  D  K  I  Q  N  P  L  L  K  T  L  V  F  F  N  Q  F  P  P  K  L  F  G  E  I  Q  F  F  N  W  G  K  *  T  Y  K  H  E  *  Q  E  R  R  R  E  E  R  E  D  N  K  R  A  S  Q  A  P  S  Q  S  Q  M  H  Q  L  Q  *  L   : G  S  P  V  C  V  H  K  L  L  D  L  C  L  H  D  M  Q  R  N  T  V  S  V  S  Y  C  M  L  F  T  S  L  V  A  *  V  V  S  P  E  I  K  *  V  K  L  L  G  V  F  K  R  V  S  S  F  Q  D  C  K  M  H  W  H  F  Y  V  L  T  T  A  E  C  I  C  Q  N  F  T  *  Y  A  C  S  *  V  V  N  F  S  Y  Y  W  I  Q  S  V  R  N  L  L  D  *  C  S  E  K  L  V  W  L  F  V  I  R  R  C  P  S  F  F  L  L  F  H  K  K  E  K  V  H  P  C  V  N  F  L  T </second_frame>
            <third_frame>   R  E  R  E  L  L  H  A  S  L  F  I  P  P  W  T  K  F  K  I  H  Y  L  K  P  *  F  F  S  I  N  F  P  Q  S  C  L  G  K  F  N  F  S  I  G  G  N  K  P  T  S  M  S  S  R  R  E  E  E  R  N  E  K  I  I  R  G  L  L  K  L  P  P  N  R  K  C  I  N  C  N  S  L  :  G  P  Q  Y  V  C  T  N  F  W  T  F  V  C  M  T  C  S  G  I  Q  *  V  Y  H  I  A  C  S  L  H  L  *  S  H  K  L  L  V  Q  K  *  S  R  *  S  C  W  G  Y  S  R  G  F  L  L  F  R  I  V  K  C  I  G  T  S  M  F  *  L  Q  R  N  A  Y  A  K  I  L  P  D  M  H  A  A  K  *  L  I  L  A  T  T  G  F  N  L  S  E  I  Y  W  T  N  V  L  K  N  *  F  G  F  L  *  *  E  D  V  H  P  F  S  Y  Y  F  I  K  R  K  R  S  I  L  V  L  I  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46103" stop="46273"/>
                    <exon start="47261" stop="47326"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSINFPQSCLGKFNFSIGGNKPTSMSSRREEERNEKIIRGLLKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="50108" PGL_stop="54531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50108" e_stop="50509"/>
            <exon e_start="50659" e_stop="50784"/>
            <exon e_start="50861" e_stop="50974"/>
            <exon e_start="51081" e_stop="51167"/>
            <exon e_start="51743" e_stop="51878"/>
            <exon e_start="51957" e_stop="51999"/>
            <exon e_start="54195" e_stop="54531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.755" acc_prob="0.708" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.940" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50108" e_stop="50509" e_length="402"/>
          </exon>
          <intron i_serial="1" don_prob="0.755" acc_prob="0.708">
            <gDNA_intron_boundary i_start="50510" i_stop="50658" i_length="149"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50659" e_stop="50784" e_length="126"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.961">
            <gDNA_intron_boundary i_start="50785" i_stop="50860" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50861" e_stop="50974" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.914" acc_prob="0.964">
            <gDNA_intron_boundary i_start="50975" i_stop="51080" i_length="106"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51081" e_stop="51167" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.933">
            <gDNA_intron_boundary i_start="51168" i_stop="51742" i_length="575"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51743" e_stop="51878" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.940">
            <gDNA_intron_boundary i_start="51879" i_stop="51956" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51957" e_stop="51999" e_length="43"/>
          </exon>
          <intron i_serial="6" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="52000" i_stop="54194" i_length="2195"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="54195" e_stop="54531" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50108" stop="50509"/>
              <exon start="50659" stop="50784"/>
              <exon start="50861" stop="50974"/>
              <exon start="51081" stop="51167"/>
              <exon start="51743" stop="51878"/>
              <exon start="51957" stop="51999"/>
              <exon start="54195" stop="54531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGCATGCAGCAACAACAGGCATCGAACAGTTCACCCTGGCACCAACACCTGCTTATGGCCATAATTCTTTTGACATTTTACCTGAAAAGACACAGCAACAATTGGTCACTGAGAAGTCATTGGATGTGGATGATGGATGGGCAACATTTGATGTGCCTCAGCACGTGACACTCACTGGAAGTAATAACTTTACCTCCAACACGATTCAATTAAAGGGTGATGCTCAATCGAATTCGGACCCAACTTTCTCCGTCATGCAATGGCCATCACCTATGGAATCTGCCCCTCATGGGCCAGCCGTTAGAGACTCCACTGCTTGTGCATTAGATTTATCAATGCCTGCTCCATTTCATGGAGGTGTGCTGAATGTTGAAGTAACTCCAAGTGCAAGAAGTACTGAC : TTGTGGAGTGCCTTTGATGTTTCTAATGACCACTTAGCTCTCAAGAGTTTGCCTAATAGTAAGGAACAAGTTGTAATGAACCATGATCTAGTTGATGATCAGTACATGGGCTTAAGAGGAGTAGAG : AATGCAGTGACAGGTCAAAGTCAAAGAGCTGTGCTGGATAGTGGATATCCTATTACCAGTTTTCCATCATATGTCAGTGCCTCGTCATCTGGATTGTCCACTCTTCCTGTAGCG : ACAGGAGTGCATTCACATGCAAATGAGCAGAAGTCCAACAACCCATTTGATCTCCCTTACGATGCTGACATGGAATGCAGCAATATG : CCGCAGTACTGGGACATGAGCTCATTACAGGCTGCATTGCCAAGTGATGGGATGTCATCTTCTTTTGTTGGTGGTGTGACCGAATCTTGGTTTCCTCAGAACCCAGCAACAGCTTATGGTCCTGCTGGACAGCATG : GGACATTATTTGTTTCCTCACAACCAGCTGGCAATCAAATATC : GAATGTGCCGACACACGGTCAAGTTGCTGCTATTGGCGGAAATCCATTTGCATAGGATTGTGTATTCAACTAGTTGTTGGATCAGCTAGATCATCATTTCAACTTTTAGATTCCTATGTATTTCATGTTTGTATTGTTAAAAAAAGAGAATGAGAGACAACTAGGCAGAAATTACCAAATTTCAAAGGCTTGCCTTTTCTTGTTGAGGCCTACAGTGTGTTCTGATACTATGGTTGATGTGATTATGGCTGAAATGTTTTGAGGATGTCCTTCTTGGCTACTTTGGCGTATTGATTTTCTTGTCAACGCTTTATCGATATCGACAAACTTATGAACA</gDNA_template>
            <first_frame> R  H  A  A  T  T  G  I  E  Q  F  T  L  A  P  T  P  A  Y  G  H  N  S  F  D  I  L  P  E  K  T  Q  Q  Q  L  V  T  E  K  S  L  D  V  D  D  G  W  A  T  F  D  V  P  Q  H  V  T  L  T  G  S  N  N  F  T  S  N  T  I  Q  L  K  G  D  A  Q  S  N  S  D  P  T  F  S  V  M  Q  W  P  S  P  M  E  S  A  P  H  G  P  A  V  R  D  S  T  A  C  A  L  D  L  S  M  P  A  P  F  H  G  G  V  L  N  V  E  V  T  P  S  A  R  S  T  D  :  L  W  S  A  F  D  V  S  N  D  H  L  A  L  K  S  L  P  N  S  K  E  Q  V  V  M  N  H  D  L  V  D  D  Q  Y  M  G  L  R  G  V  E  :  N  A  V  T  G  Q  S  Q  R  A  V  L  D  S  G  Y  P  I  T  S  F  P  S  Y  V  S  A  S  S  S  G  L  S  T  L  P  V  A  :  T  G  V  H  S  H  A  N  E  Q  K  S  N  N  P  F  D  L  P  Y  D  A  D  M  E  C  S  N  M  :  P  Q  Y  W  D  M  S  S  L  Q  A  A  L  P  S  D  G  M  S  S  S  F  V  G  G  V  T  E  S  W  F  P  Q  N  P  A  T  A  Y  G  P  A  G  Q  H   : G  T  L  F  V  S  S  Q  P  A  G  N  Q  I  S :   N  V  P  T  H  G  Q  V  A  A  I  G  G  N  P  F  A  *  D  C  V  F  N  *  L  L  D  Q  L  D  H  H  F  N  F  *  I  P  M  Y  F  M  F  V  L  L  K  K  E  N  E  R  Q  L  G  R  N  Y  Q  I  S  K  A  C  L  F  L  L  R  P  T  V  C  S  D  T  M  V  D  V  I  M  A  E  M  F  *  G  C  P  S  W  L  L  W  R  I  D  F  L  V  N  A  L  S  I  S  T  N  L  *  T </first_frame>
            <second_frame>  G  M  Q  Q  Q  Q  A  S  N  S  S  P  W  H  Q  H  L  L  M  A  I  I  L  L  T  F  Y  L  K  R  H  S  N  N  W  S  L  R  S  H  W  M  W  M  M  D  G  Q  H  L  M  C  L  S  T  *  H  S  L  E  V  I  T  L  P  P  T  R  F  N  *  R  V  M  L  N  R  I  R  T  Q  L  S  P  S  C  N  G  H  H  L  W  N  L  P  L  M  G  Q  P  L  E  T  P  L  L  V  H  *  I  Y  Q  C  L  L  H  F  M  E  V  C  *  M  L  K  *  L  Q  V  Q  E  V  L  T :   C  G  V  P  L  M  F  L  M  T  T  *  L  S  R  V  C  L  I  V  R  N  K  L  *  *  T  M  I  *  L  M  I  S  T  W  A  *  E  E  *  R :   M  Q  *  Q  V  K  V  K  E  L  C  W  I  V  D  I  L  L  P  V  F  H  H  M  S  V  P  R  H  L  D  C  P  L  F  L  *  R :   Q  E  C  I  H  M  Q  M  S  R  S  P  T  T  H  L  I  S  L  T  M  L  T  W  N  A  A  I  C :   R  S  T  G  T  *  A  H  Y  R  L  H  C  Q  V  M  G  C  H  L  L  L  L  V  V  *  P  N  L  G  F  L  R  T  Q  Q  Q  L  M  V  L  L  D  S  M  :  G  H  Y  L  F  P  H  N  Q  L  A  I  K  Y   : R  M  C  R  H  T  V  K  L  L  L  L  A  E  I  H  L  H  R  I  V  Y  S  T  S  C  W  I  S  *  I  I  I  S  T  F  R  F  L  C  I  S  C  L  Y  C  *  K  K  R  M  R  D  N  *  A  E  I  T  K  F  Q  R  L  A  F  S  C  *  G  L  Q  C  V  L  I  L  W  L  M  *  L  W  L  K  C  F  E  D  V  L  L  G  Y  F  G  V  L  I  F  L  S  T  L  Y  R  Y  R  Q  T  Y  E   </second_frame>
            <third_frame>   A  C  S  N  N  R  H  R  T  V  H  P  G  T  N  T  C  L  W  P  *  F  F  *  H  F  T  *  K  D  T  A  T  I  G  H  *  E  V  I  G  C  G  *  W  M  G  N  I  *  C  A  S  A  R  D  T  H  W  K  *  *  L  Y  L  Q  H  D  S  I  K  G  *  C  S  I  E  F  G  P  N  F  L  R  H  A  M  A  I  T  Y  G  I  C  P  S  W  A  S  R  *  R  L  H  C  L  C  I  R  F  I  N  A  C  S  I  S  W  R  C  A  E  C  *  S  N  S  K  C  K  K  Y  *   : L  V  E  C  L  *  C  F  *  *  P  L  S  S  Q  E  F  A  *  *  *  G  T  S  C  N  E  P  *  S  S  *  *  S  V  H  G  L  K  R  S  R   : E  C  S  D  R  S  K  S  K  S  C  A  G  *  W  I  S  Y  Y  Q  F  S  I  I  C  Q  C  L  V  I  W  I  V  H  S  S  C  S   : D  R  S  A  F  T  C  K  *  A  E  V  Q  Q  P  I  *  S  P  L  R  C  *  H  G  M  Q  Q  Y   : A  A  V  L  G  H  E  L  I  T  G  C  I  A  K  *  W  D  V  I  F  F  C  W  W  C  D  R  I  L  V  S  S  E  P  S  N  S  L  W  S  C  W  T  A  W :   D  I  I  C  F  L  T  T  S  W  Q  S  N  I  :  E  C  A  D  T  R  S  S  C  C  Y  W  R  K  S  I  C  I  G  L  C  I  Q  L  V  V  G  S  A  R  S  S  F  Q  L  L  D  S  Y  V  F  H  V  C  I  V  K  K  R  E  *  E  T  T  R  Q  K  L  P  N  F  K  G  L  P  F  L  V  E  A  Y  S  V  F  *  Y  Y  G  *  C  D  Y  G  *  N  V  L  R  M  S  F  L  A  T  L  A  Y  *  F  S  C  Q  R  F  I  D  I  D  K  L  M  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50108" stop="50509"/>
                    <exon start="50659" stop="50784"/>
                    <exon start="50861" stop="50974"/>
                    <exon start="51081" stop="51167"/>
                    <exon start="51743" stop="51878"/>
                    <exon start="51957" stop="51999"/>
                    <exon start="54195" stop="54249"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHAATTGIEQFTLAPTPAYGHNSFDILPEKTQQQLVTEKSLDVDDGWATFDVPQHVTLTGSNNFTSNTIQLKGDAQSNSDPTFSVMQWPSPMESAPHGPAVRDSTACALDLSMPAPFHGGVLNVEVTPSARSTDLWSAFDVSNDHLALKSLPNSKEQVVMNHDLVDDQYMGLRGVENAVTGQSQRAVLDSGYPITSFPSYVSASSSGLSTLPVATGVHSHANEQKSNNPFDLPYDADMECSNMPQYWDMSSLQAALPSDGMSSSFVGGVTESWFPQNPATAYGPAGQHGTLFVSSQPAGNQISNVPTHGQVAAIGGNPFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="55765" PGL_stop="56652"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55765" e_stop="55797"/>
            <exon e_start="55882" e_stop="56652"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55765" e_stop="55797" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="55798" i_stop="55881" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55882" e_stop="56652" e_length="771"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55765" stop="55797"/>
              <exon start="55882" stop="56652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598224" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGACTATTCAAATTGATCTATATTTCAACCCTG : GAATTTTACAATTGTGTTTGAATTGATTTGTAAAGGTGGGATTTTTATTCTTTGTCTTGATCTAGAAGGGAATTGATTCTAGTTCATATTTTTGACAAGAACTAGGTGGGTACAGTGAAGAAAAATTAGATATTCAGATCCCATTTCTGAGGAAGTTGCTTCATTTTAGGTATTGGGTTGTGAAGGATTGAAGTTAAAATGAGGAAAGCTGTAATCTTTACTATTGAAGTGTGTTATAGGACAGTTAGGAATCATCCATTCCTTGTGGGTATGTTGTGTTTCTTGGTATTTCTGTACAGATCATTTCCTTTTGTGTTTTCAATCTTGGTGTCTGTCTCCCCTATTCTTGTTTGCACTGCTGCACTGCTTGGAACTTTACTAAGTTATGGTCAGCCTAATATACCTGTATTTGAATGGGAAGAAAACACAACTGATCATATTGTGCCTTTGGAAACACGAGATGCTATTCTTGTTGAGAGTGACAATAGTTACTTCACCGAGAGATATAGTGATCAAGAGAGGGATAAAGTAGACCAATCAACGCGTAGTGAGGTTCATAGGGGTAAAAGATTTGGTGATCATTCTGCTCTAATTGGTGGAGTTTTAGTTGGTGGAGTTACTGGGCAAGTGGCAAGGGAGTTTTATGAGCATAAAAATGAAGACAAATTTAGTGATGCTGAACTTACGGAGGACCAGTATTCTCCTACTTCGAAGGGTAATGAAGAGAGCGTTGAGTTTGATAATGACAAATCAGTTGATTCCTTTGATTCT</gDNA_template>
            <first_frame> G  L  F  K  L  I  Y  I  S  T  L  :  E  F  Y  N  C  V  *  I  D  L  *  R  W  D  F  Y  S  L  S  *  S  R  R  E  L  I  L  V  H  I  F  D  K  N  *  V  G  T  V  K  K  N  *  I  F  R  S  H  F  *  G  S  C  F  I  L  G  I  G  L  *  R  I  E  V  K  M  R  K  A  V  I  F  T  I  E  V  C  Y  R  T  V  R  N  H  P  F  L  V  G  M  L  C  F  L  V  F  L  Y  R  S  F  P  F  V  F  S  I  L  V  S  V  S  P  I  L  V  C  T  A  A  L  L  G  T  L  L  S  Y  G  Q  P  N  I  P  V  F  E  W  E  E  N  T  T  D  H  I  V  P  L  E  T  R  D  A  I  L  V  E  S  D  N  S  Y  F  T  E  R  Y  S  D  Q  E  R  D  K  V  D  Q  S  T  R  S  E  V  H  R  G  K  R  F  G  D  H  S  A  L  I  G  G  V  L  V  G  G  V  T  G  Q  V  A  R  E  F  Y  E  H  K  N  E  D  K  F  S  D  A  E  L  T  E  D  Q  Y  S  P  T  S  K  G  N  E  E  S  V  E  F  D  N  D  K  S  V  D  S  F  D  S </first_frame>
            <second_frame>  D  Y  S  N  *  S  I  F  Q  P  W :   N  F  T  I  V  F  E  L  I  C  K  G  G  I  F  I  L  C  L  D  L  E  G  N  *  F  *  F  I  F  L  T  R  T  R  W  V  Q  *  R  K  I  R  Y  S  D  P  I  S  E  E  V  A  S  F  *  V  L  G  C  E  G  L  K  L  K  *  G  K  L  *  S  L  L  L  K  C  V  I  G  Q  L  G  I  I  H  S  L  W  V  C  C  V  S  W  Y  F  C  T  D  H  F  L  L  C  F  Q  S  W  C  L  S  P  L  F  L  F  A  L  L  H  C  L  E  L  Y  *  V  M  V  S  L  I  Y  L  Y  L  N  G  K  K  T  Q  L  I  I  L  C  L  W  K  H  E  M  L  F  L  L  R  V  T  I  V  T  S  P  R  D  I  V  I  K  R  G  I  K  *  T  N  Q  R  V  V  R  F  I  G  V  K  D  L  V  I  I  L  L  *  L  V  E  F  *  L  V  E  L  L  G  K  W  Q  G  S  F  M  S  I  K  M  K  T  N  L  V  M  L  N  L  R  R  T  S  I  L  L  L  R  R  V  M  K  R  A  L  S  L  I  M  T  N  Q  L  I  P  L  I   </second_frame>
            <third_frame>   T  I  Q  I  D  L  Y  F  N  P   : G  I  L  Q  L  C  L  N  *  F  V  K  V  G  F  L  F  F  V  L  I  *  K  G  I  D  S  S  S  Y  F  *  Q  E  L  G  G  Y  S  E  E  K  L  D  I  Q  I  P  F  L  R  K  L  L  H  F  R  Y  W  V  V  K  D  *  S  *  N  E  E  S  C  N  L  Y  Y  *  S  V  L  *  D  S  *  E  S  S  I  P  C  G  Y  V  V  F  L  G  I  S  V  Q  I  I  S  F  C  V  F  N  L  G  V  C  L  P  Y  S  C  L  H  C  C  T  A  W  N  F  T  K  L  W  S  A  *  Y  T  C  I  *  M  G  R  K  H  N  *  S  Y  C  A  F  G  N  T  R  C  Y  S  C  *  E  *  Q  *  L  L  H  R  E  I  *  *  S  R  E  G  *  S  R  P  I  N  A  *  *  G  S  *  G  *  K  I  W  *  S  F  C  S  N  W  W  S  F  S  W  W  S  Y  W  A  S  G  K  G  V  L  *  A  *  K  *  R  Q  I  *  *  C  *  T  Y  G  G  P  V  F  S  Y  F  E  G  *  *  R  E  R  *  V  *  *  *  Q  I  S  *  F  L  *  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56065" stop="56652"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIEVKMRKAVIFTIEVCYRTVRNHPFLVGMLCFLVFLYRSFPFVFSILVSVSPILVCTAALLGTLLSYGQPNIPVFEWEENTTDHIVPLETRDAILVESDNSYFTERYSDQERDKVDQSTRSEVHRGKRFGDHSALIGGVLVGGVTGQVAREFYEHKNEDKFSDAELTEDQYSPTSKGNEESVEFDNDKSVDSFDS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="57459" PGL_stop="60545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57459" e_stop="58476"/>
            <exon e_start="60470" e_stop="60545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.996" e_score="0.982"/>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="57459" e_stop="58476" e_length="1018"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58477" i_stop="60469" i_length="1993"/>
          </intron>
          <exon e_serial="2" e_score="0.947">
            <gDNA_exon_boundary e_start="60470" e_stop="60545" e_length="76"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57459" stop="58021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U562856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58016" stop="58476"/>
              <exon start="60470" stop="60545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTTACTTTGTTCCTGATGTGATGGCTGCTGAAGGAACAAGTTATTCACCATTACAAAGGCACCCCAGCGATCTCAGTGATTCCAAAGTAAGTTCTGTTCTTGAAACAGAGTCACAGGGCTCAATTGAAGATCTGGAATACAAGAACCTCAATGAGGAAGATGTAGAAGACAAGAACCTGAATGAAGAACTGGAAGGCAAAGACCTGACAGATGAACATATCTTCAAGGAACCAAAGCTGATATCTAAGATAGAGCATGCTACCGAGGATATTGGACATGGAAGCCAATCCTCCGAAGAAGTAGAATGTTTGGTCCTAGGTGCATCTGATAAGAGGGATATTGAACTCGATGACACTGATGTTACACTACCAAATGTGGAAAATCATCATGATTTGGTACCAAATGTATTCCATGAAGAAACAGCAGCCAGCTCCATGGTACTTGATCCGTCTAAAATTTGTTCAAAGTCAGCAACATCTGAACAAAAATGCAGTAGTCAGTCAAGCTCCTCCTCCTCATCAGAAGTAGGTGAAAAGATCTTTGCTGACAAAGTAGTGGTGAGATCAAGTTCAGAGGAATCGACGTGCCATGTTGAAACCATCTCTGAGCATCCTTCGCCGAATGTGTCAGATCTGAACATCACAAGCAGTTCAGTGGAGGAGAGTTCACATTTGGAACCTATTTATGATGCCAGTCCTCCTTCAATTAAGAAAAATACTTCTTCCTCCTCAATTGCTTCAGATCTGCTTCTAGAATCTGAAACCGGGCATGCCTCTGAGAGGGAACCTGTGGCAAATAATCGAGACATTGAGAAGTCCATTCCGACGAAGGAACAAATATTTTCATCAGCAGATTCCAAAGAATTGCGGCTGAGGGAGGCAATAACTGACAAACATGAGCTTGATGTTGCAAAGTTGGAGATATCAAACAACGATGAAGTCTTTGGCAGTGCAAGTGCTCTTCCGGTGCCTGTAGCAGATAGTCAGACATCTATTGATTCGAAGTCTTCCACAAAA : GAGGCACCTGTTTCAACGGAGAAAGCAAGGACCACAGAAAGCTTGAATGTGTCAAAAGTTCAAGAAGTTCCTCCCA</gDNA_template>
            <first_frame> T  L  L  C  S  *  C  D  G  C  *  R  N  K  L  F  T  I  T  K  A  P  Q  R  S  Q  *  F  Q  S  K  F  C  S  *  N  R  V  T  G  L  N  *  R  S  G  I  Q  E  P  Q  *  G  R  C  R  R  Q  E  P  E  *  R  T  G  R  Q  R  P  D  R  *  T  Y  L  Q  G  T  K  A  D  I  *  D  R  A  C  Y  R  G  Y  W  T  W  K  P  I  L  R  R  S  R  M  F  G  P  R  C  I  *  *  E  G  Y  *  T  R  *  H  *  C  Y  T  T  K  C  G  K  S  S  *  F  G  T  K  C  I  P  *  R  N  S  S  Q  L  H  G  T  *  S  V  *  N  L  F  K  V  S  N  I  *  T  K  M  Q  *  S  V  K  L  L  L  L  I  R  S  R  *  K  D  L  C  *  Q  S  S  G  E  I  K  F  R  G  I  D  V  P  C  *  N  H  L  *  A  S  F  A  E  C  V  R  S  E  H  H  K  Q  F  S  G  G  E  F  T  F  G  T  Y  L  *  C  Q  S  S  F  N  *  E  K  Y  F  F  L  L  N  C  F  R  S  A  S  R  I  *  N  R  A  C  L  *  E  G  T  C  G  K  *  S  R  H  *  E  V  H  S  D  E  G  T  N  I  F  I  S  R  F  Q  R  I  A  A  E  G  G  N  N  *  Q  T  *  A  *  C  C  K  V  G  D  I  K  Q  R  *  S  L  W  Q  C  K  C  S  S  G  A  C  S  R  *  S  D  I  Y  *  F  E  V  F  H  K   : R  G  T  C  F  N  G  E  S  K  D  H  R  K  L  E  C  V  K  S  S  R  S  S  S   </first_frame>
            <second_frame>  P  Y  F  V  P  D  V  M  A  A  E  G  T  S  Y  S  P  L  Q  R  H  P  S  D  L  S  D  S  K  V  S  S  V  L  E  T  E  S  Q  G  S  I  E  D  L  E  Y  K  N  L  N  E  E  D  V  E  D  K  N  L  N  E  E  L  E  G  K  D  L  T  D  E  H  I  F  K  E  P  K  L  I  S  K  I  E  H  A  T  E  D  I  G  H  G  S  Q  S  S  E  E  V  E  C  L  V  L  G  A  S  D  K  R  D  I  E  L  D  D  T  D  V  T  L  P  N  V  E  N  H  H  D  L  V  P  N  V  F  H  E  E  T  A  A  S  S  M  V  L  D  P  S  K  I  C  S  K  S  A  T  S  E  Q  K  C  S  S  Q  S  S  S  S  S  S  S  E  V  G  E  K  I  F  A  D  K  V  V  V  R  S  S  S  E  E  S  T  C  H  V  E  T  I  S  E  H  P  S  P  N  V  S  D  L  N  I  T  S  S  S  V  E  E  S  S  H  L  E  P  I  Y  D  A  S  P  P  S  I  K  K  N  T  S  S  S  S  I  A  S  D  L  L  L  E  S  E  T  G  H  A  S  E  R  E  P  V  A  N  N  R  D  I  E  K  S  I  P  T  K  E  Q  I  F  S  S  A  D  S  K  E  L  R  L  R  E  A  I  T  D  K  H  E  L  D  V  A  K  L  E  I  S  N  N  D  E  V  F  G  S  A  S  A  L  P  V  P  V  A  D  S  Q  T  S  I  D  S  K  S  S  T  K  :  E  A  P  V  S  T  E  K  A  R  T  T  E  S  L  N  V  S  K  V  Q  E  V  P  P  </second_frame>
            <third_frame>   L  T  L  F  L  M  *  W  L  L  K  E  Q  V  I  H  H  Y  K  G  T  P  A  I  S  V  I  P  K  *  V  L  F  L  K  Q  S  H  R  A  Q  L  K  I  W  N  T  R  T  S  M  R  K  M  *  K  T  R  T  *  M  K  N  W  K  A  K  T  *  Q  M  N  I  S  S  R  N  Q  S  *  Y  L  R  *  S  M  L  P  R  I  L  D  M  E  A  N  P  P  K  K  *  N  V  W  S  *  V  H  L  I  R  G  I  L  N  S  M  T  L  M  L  H  Y  Q  M  W  K  I  I  M  I  W  Y  Q  M  Y  S  M  K  K  Q  Q  P  A  P  W  Y  L  I  R  L  K  F  V  Q  S  Q  Q  H  L  N  K  N  A  V  V  S  Q  A  P  P  P  H  Q  K  *  V  K  R  S  L  L  T  K  *  W  *  D  Q  V  Q  R  N  R  R  A  M  L  K  P  S  L  S  I  L  R  R  M  C  Q  I  *  T  S  Q  A  V  Q  W  R  R  V  H  I  W  N  L  F  M  M  P  V  L  L  Q  L  R  K  I  L  L  P  P  Q  L  L  Q  I  C  F  *  N  L  K  P  G  M  P  L  R  G  N  L  W  Q  I  I  E  T  L  R  S  P  F  R  R  R  N  K  Y  F  H  Q  Q  I  P  K  N  C  G  *  G  R  Q  *  L  T  N  M  S  L  M  L  Q  S  W  R  Y  Q  T  T  M  K  S  L  A  V  Q  V  L  F  R  C  L  *  Q  I  V  R  H  L  L  I  R  S  L  P  Q  K :   R  H  L  F  Q  R  R  K  Q  G  P  Q  K  A  *  M  C  Q  K  F  K  K  F  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57460" stop="58476"/>
                    <exon start="60470" stop="60544"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1092</number_coding_nucleotides>
                  <number_encoded_amino_acids>364</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYFVPDVMAAEGTSYSPLQRHPSDLSDSKVSSVLETESQGSIEDLEYKNLNEEDVEDKNLNEELEGKDLTDEHIFKEPKLISKIEHATEDIGHGSQSSEEVECLVLGASDKRDIELDDTDVTLPNVENHHDLVPNVFHEETAASSMVLDPSKICSKSATSEQKCSSQSSSSSSSEVGEKIFADKVVVRSSSEESTCHVETISEHPSPNVSDLNITSSSVEESSHLEPIYDASPPSIKKNTSSSSIASDLLLESETGHASEREPVANNRDIEKSIPTKEQIFSSADSKELRLREAITDKHELDVAKLEISNNDEVFGSASALPVPVADSQTSIDSKSSTKEAPVSTEKARTTESLNVSKVQEVPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="81417" PGL_stop="77205"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81417" e_stop="81218"/>
            <exon e_start="81131" e_stop="81020"/>
            <exon e_start="78889" e_stop="78731"/>
            <exon e_start="77436" e_stop="77384"/>
            <exon e_start="77273" e_stop="77205"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.458" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81417" e_stop="81218" e_length="200"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.994">
            <gDNA_intron_boundary i_start="81217" i_stop="81132" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81131" e_stop="81020" e_length="112"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.762">
            <gDNA_intron_boundary i_start="81019" i_stop="78890" i_length="2130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78889" e_stop="78731" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.977">
            <gDNA_intron_boundary i_start="78730" i_stop="77437" i_length="1294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77436" e_stop="77384" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.458" acc_prob="0.990">
            <gDNA_intron_boundary i_start="77383" i_stop="77274" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77273" e_stop="77205" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81417" stop="81218"/>
              <exon start="81131" stop="81020"/>
              <exon start="78889" stop="78731"/>
              <exon start="77436" stop="77384"/>
              <exon start="77273" stop="77205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598334" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTACCTTCCTCATGGATTGAAGAAAAAGTGCGAGACTACTTTGGCAAATTTGGTGAAATTGAGAGTGTTGTTCTTGCAAAAGATCTTCCTTCCTCAAGGAGAAAAGATTTTGCCTTTGTCAATTATATAAGCCGCGAGTCTGCTCTTGCGTGCATTGAAGGATTCAGTCATGAACCAGCTAATGAAAGCGGATCCAAG : GTAAGCATTAAGGTATCTCTTGCTAAACCCATGCCAAAGAGTAAGCAAACTAAACGTGTAACCCTTCCTACTAGAAGGGAACCTCCGGAGAAGAAGAAAATACAGGACCATT : CCATCTTGAAGAGGCATGAACCCAGCAGAAAGGTAAACTACATGAGAAGATATGATGAGGATCACAGAGTTGAAGGATCTTCTTCTACAACCAATGAACTTCTGCACCTCTTGAGACAACAAGGGCCAGTTCGTCAGCTCCATTCCGGTTTGAACATGG : GTATTAACCATCAGTACTCGTTATCTGGAAGCAAGCGACCGTTTTCAGCTGTA : GTACATAATCCACATCGTATGGATTCCAGTGGAGTTTCTAGAGTGCACTTAGAAAGCTCTTTCCCTACT</gDNA_template>
            <first_frame> I  Y  L  P  H  G  L  K  K  K  C  E  T  T  L  A  N  L  V  K  L  R  V  L  F  L  Q  K  I  F  L  P  Q  G  E  K  I  L  P  L  S  I  I  *  A  A  S  L  L  L  R  A  L  K  D  S  V  M  N  Q  L  M  K  A  D  P  R :   *  A  L  R  Y  L  L  L  N  P  C  Q  R  V  S  K  L  N  V  *  P  F  L  L  E  G  N  L  R  R  R  R  K  Y  R  T  I  :  P  S  *  R  G  M  N  P  A  E  R  *  T  T  *  E  D  M  M  R  I  T  E  L  K  D  L  L  L  Q  P  M  N  F  C  T  S  *  D  N  K  G  Q  F  V  S  S  I  P  V  *  T  W  :  V  L  T  I  S  T  R  Y  L  E  A  S  D  R  F  Q  L  * :   Y  I  I  H  I  V  W  I  P  V  E  F  L  E  C  T  *  K  A  L  S  L   </first_frame>
            <second_frame>  F  T  F  L  M  D  *  R  K  S  A  R  L  L  W  Q  I  W  *  N  *  E  C  C  S  C  K  R  S  S  F  L  K  E  K  R  F  C  L  C  Q  L  Y  K  P  R  V  C  S  C  V  H  *  R  I  Q  S  *  T  S  *  *  K  R  I  Q   : G  K  H  *  G  I  S  C  *  T  H  A  K  E  *  A  N  *  T  C  N  P  S  Y  *  K  G  T  S  G  E  E  E  N  T  G  P  F :   H  L  E  E  A  *  T  Q  Q  K  G  K  L  H  E  K  I  *  *  G  S  Q  S  *  R  I  F  F  Y  N  Q  *  T  S  A  P  L  E  T  T  R  A  S  S  S  A  P  F  R  F  E  H  G :   Y  *  P  S  V  L  V  I  W  K  Q  A  T  V  F  S  C   : S  T  *  S  T  S  Y  G  F  Q  W  S  F  *  S  A  L  R  K  L  F  P  Y  </second_frame>
            <third_frame>   L  P  S  S  W  I  E  E  K  V  R  D  Y  F  G  K  F  G  E  I  E  S  V  V  L  A  K  D  L  P  S  S  R  R  K  D  F  A  F  V  N  Y  I  S  R  E  S  A  L  A  C  I  E  G  F  S  H  E  P  A  N  E  S  G  S  K  :  V  S  I  K  V  S  L  A  K  P  M  P  K  S  K  Q  T  K  R  V  T  L  P  T  R  R  E  P  P  E  K  K  K  I  Q  D  H   : S  I  L  K  R  H  E  P  S  R  K  V  N  Y  M  R  R  Y  D  E  D  H  R  V  E  G  S  S  S  T  T  N  E  L  L  H  L  L  R  Q  Q  G  P  V  R  Q  L  H  S  G  L  N  M   : G  I  N  H  Q  Y  S  L  S  G  S  K  R  P  F  S  A  V  :  V  H  N  P  H  R  M  D  S  S  G  V  S  R  V  H  L  E  S  S  F  P  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81415" stop="81218"/>
                    <exon start="81131" stop="81020"/>
                    <exon start="78889" stop="78731"/>
                    <exon start="77436" stop="77384"/>
                    <exon start="77273" stop="77205"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPSSWIEEKVRDYFGKFGEIESVVLAKDLPSSRRKDFAFVNYISRESALACIEGFSHEPANESGSKVSIKVSLAKPMPKSKQTKRVTLPTRREPPEKKKIQDHSILKRHEPSRKVNYMRRYDEDHRVEGSSSTTNELLHLLRQQGPVRQLHSGLNMGINHQYSLSGSKRPFSAVVHNPHRMDSSGVSRVHLESSFPT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="83288" PGL_stop="81891"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83288" e_stop="82705"/>
            <exon e_start="82094" e_stop="82005"/>
            <exon e_start="81928" e_stop="81891"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.925" e_score="0.998"/>
          <exon-intron don_prob="0.960" acc_prob="0.952" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="83288" e_stop="82705" e_length="584"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.925">
            <gDNA_intron_boundary i_start="82704" i_stop="82095" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82094" e_stop="82005" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.952">
            <gDNA_intron_boundary i_start="82004" i_stop="81929" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="81928" e_stop="81891" e_length="38"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83288" stop="82705"/>
              <exon start="82094" stop="82005"/>
              <exon start="81928" stop="81891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGCTGAAAATGAGGAGTCAAAGAAACATAGTTTACATCCGATGGAAGTTGAGAAGGCTGAGTGTGTTAGTGAGTTTGGTGCAACTGAAAACACATTAGAGGCTTGCATGTTGGAATGCAAAGATAGTGTTGTTGAGAATGATAATATGGATTCCCTTGAAACACAAATTGTAGTTCTTGATTCAGAAAAAAATAGTCTTAATGTTTCTACTAGTGATAATGTGGATTCGAGTAAGGATCAAAATTTGGTTCAGTTGGGAGAGGAAGGGTACAGTCAAGGCAGAGAGGAAACAAAGGAAGCTGTGGATACTAGTCTGAGGTTGAATGAAGGAATTCTATTGAGTGGGGAAATGGAGGCATTAGAACGGAAAAAGAGGCGGAGGACAGAGATATTCATTGGGGGATTAGGCAAGGAGTCAAAGGAAGAGGATATTAGGAGTATCTTTGGTGAGGTTGGTGAGGTTGTGGATGTAAGATTGTTGATAAATCATGAAACAGGAAAGAACAAGGGGTTTGCTTTCCTCCGGTATGCTTCTGCTGCTGATGCAAAGAAGGCTGTAGAAAGATATTCCAAAGTTGAG : ATATCTGGGAAGCAATGTCGTGTATCCCTTGCTGAGGGTAATGACACAATATACCTGGGTAATATTGACAAGAAATGGAAGACTGAAGAT : GTGATTGATCTACTGAAGAAGGCTGGAATTGAAAATAT</gDNA_template>
            <first_frame> F  Q  L  K  M  R  S  Q  R  N  I  V  Y  I  R  W  K  L  R  R  L  S  V  L  V  S  L  V  Q  L  K  T  H  *  R  L  A  C  W  N  A  K  I  V  L  L  R  M  I  I  W  I  P  L  K  H  K  L  *  F  L  I  Q  K  K  I  V  L  M  F  L  L  V  I  M  W  I  R  V  R  I  K  I  W  F  S  W  E  R  K  G  T  V  K  A  E  R  K  Q  R  K  L  W  I  L  V  *  G  *  M  K  E  F  Y  *  V  G  K  W  R  H  *  N  G  K  R  G  G  G  Q  R  Y  S  L  G  D  *  A  R  S  Q  R  K  R  I  L  G  V  S  L  V  R  L  V  R  L  W  M  *  D  C  *  *  I  M  K  Q  E  R  T  R  G  L  L  S  S  G  M  L  L  L  L  M  Q  R  R  L  *  K  D  I  P  K  L  R :   Y  L  G  S  N  V  V  Y  P  L  L  R  V  M  T  Q  Y  T  W  V  I  L  T  R  N  G  R  L  K  M :   *  L  I  Y  *  R  R  L  E  L  K  I  </first_frame>
            <second_frame>  F  S  *  K  *  G  V  K  E  T  *  F  T  S  D  G  S  *  E  G  *  V  C  *  *  V  W  C  N  *  K  H  I  R  G  L  H  V  G  M  Q  R  *  C  C  *  E  *  *  Y  G  F  P  *  N  T  N  C  S  S  *  F  R  K  K  *  S  *  C  F  Y  *  *  *  C  G  F  E  *  G  S  K  F  G  S  V  G  R  G  R  V  Q  S  R  Q  R  G  N  K  G  S  C  G  Y  *  S  E  V  E  *  R  N  S  I  E  W  G  N  G  G  I  R  T  E  K  E  A  E  D  R  D  I  H  W  G  I  R  Q  G  V  K  G  R  G  Y  *  E  Y  L  W  *  G  W  *  G  C  G  C  K  I  V  D  K  S  *  N  R  K  E  Q  G  V  C  F  P  P  V  C  F  C  C  *  C  K  E  G  C  R  K  I  F  Q  S  *   : D  I  W  E  A  M  S  C  I  P  C  *  G  *  *  H  N  I  P  G  *  Y  *  Q  E  M  E  D  *  R   : C  D  *  S  T  E  E  G  W  N  *  K  Y </second_frame>
            <third_frame>   S  A  E  N  E  E  S  K  K  H  S  L  H  P  M  E  V  E  K  A  E  C  V  S  E  F  G  A  T  E  N  T  L  E  A  C  M  L  E  C  K  D  S  V  V  E  N  D  N  M  D  S  L  E  T  Q  I  V  V  L  D  S  E  K  N  S  L  N  V  S  T  S  D  N  V  D  S  S  K  D  Q  N  L  V  Q  L  G  E  E  G  Y  S  Q  G  R  E  E  T  K  E  A  V  D  T  S  L  R  L  N  E  G  I  L  L  S  G  E  M  E  A  L  E  R  K  K  R  R  R  T  E  I  F  I  G  G  L  G  K  E  S  K  E  E  D  I  R  S  I  F  G  E  V  G  E  V  V  D  V  R  L  L  I  N  H  E  T  G  K  N  K  G  F  A  F  L  R  Y  A  S  A  A  D  A  K  K  A  V  E  R  Y  S  K  V  E  :  I  S  G  K  Q  C  R  V  S  L  A  E  G  N  D  T  I  Y  L  G  N  I  D  K  K  W  K  T  E  D  :  V  I  D  L  L  K  K  A  G  I  E  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83286" stop="82705"/>
                    <exon start="82094" stop="82005"/>
                    <exon start="81928" stop="81893"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>708</number_coding_nucleotides>
                  <number_encoded_amino_acids>236</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SAENEESKKHSLHPMEVEKAECVSEFGATENTLEACMLECKDSVVENDNMDSLETQIVVLDSEKNSLNVSTSDNVDSSKDQNLVQLGEEGYSQGREETKEAVDTSLRLNEGILLSGEMEALERKKRRRTEIFIGGLGKESKEEDIRSIFGEVGEVVDVRLLINHETGKNKGFAFLRYASAADAKKAVERYSKVEISGKQCRVSLAEGNDTIYLGNIDKKWKTEDVIDLLKKAGIEN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="89555" PGL_stop="94660"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89555" e_stop="89646"/>
            <exon e_start="89722" e_stop="89828"/>
            <exon e_start="89912" e_stop="89987"/>
            <exon e_start="90872" e_stop="90943"/>
            <exon e_start="91068" e_stop="91130"/>
            <exon e_start="91898" e_stop="92250"/>
            <exon e_start="93494" e_stop="93617"/>
            <exon e_start="94196" e_stop="94660"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.975" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.884" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="89555" e_stop="89646" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="89647" i_stop="89721" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89722" e_stop="89828" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.971">
            <gDNA_intron_boundary i_start="89829" i_stop="89911" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89912" e_stop="89987" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="89988" i_stop="90871" i_length="884"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="90872" e_stop="90943" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.949" acc_prob="0.971">
            <gDNA_intron_boundary i_start="90944" i_stop="91067" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91068" e_stop="91130" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.967">
            <gDNA_intron_boundary i_start="91131" i_stop="91897" i_length="767"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="91898" e_stop="92250" e_length="353"/>
          </exon>
          <intron i_serial="6" don_prob="0.884" acc_prob="0.976">
            <gDNA_intron_boundary i_start="92251" i_stop="93493" i_length="1243"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="93494" e_stop="93617" e_length="124"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.982">
            <gDNA_intron_boundary i_start="93618" i_stop="94195" i_length="578"/>
          </intron>
          <exon e_serial="8" e_score="0.996">
            <gDNA_exon_boundary e_start="94196" e_stop="94660" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89555" stop="89646"/>
              <exon start="89722" stop="89828"/>
              <exon start="89912" stop="89987"/>
              <exon start="90872" stop="90943"/>
              <exon start="91068" stop="91130"/>
              <exon start="91898" stop="92250"/>
              <exon start="93494" stop="93617"/>
              <exon start="94196" stop="94660"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570724" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCAGCTGTCACATTTATATCTTCTCCTCTTCCACTCAGGCTCACAGCAAAACAAAGCTGAGAGATACGGATTTCAAACTCAATAATGCAG : GAGGTAAGAACAGTACGAGTGGGTAATGTATCAGATCTGGCAGCTGAGAGAGAGGTTCGCGAGTTCTTCTCGTTTTCCGGCGAGATTGACCACATTGAGATTCGCCG : AGAACAAGGACAATCCAAGACTGCCTTTGTTACATTTAAAGATCCGAAAGCGCTTGAAATTGCTTTGTTGTTGTCG : GGAGCAACCATAGTGGATCAGATTGTAAGTATAAAGCAGGCAGAAGACTATGTTCCATCATCTGAGACTCGG : GAAGTCAGGATAGTTGATAATGCTGTGAATGTTGCTGGAGAAAGTTCTTCTCCGCTTGCTGAG : GCCAAACCTACTTCTCCTAGCAATGGAAGGGTGAACGGGAAAGTATATATCAGTAAAGCCCAAGATGTTGTCTCAAATGTGTTGGCGAAAGGTTCAGCTATCAGACAAGATGCAATGAATAAAGCCAAGGCATTTGATGAGAAACATCAGCTAAGAGCCACTGCATCTGCTCGAGTCATTTCCTTTGACCGAAGAGTTGGGCTAACAGAAAAGCTTACGGTTGGAATTTCTGTTGTAAATGAGAAAGTTAAATCTGTTGATCAAAGGCTTCAAGTGTCAGATAAAACGATGGCTGCAGTTATGGCAGCAGAACGGAAATTGAATGACACAGGATCAGCAGTCAAATCAAGCAG : GTATGTTAATGCTGGAGCTGCCTGGCTGAATGGTGCTTTCAGTAAAGTAGCTAAGGCAGGGCAAGTTGCTGGTACAAAAACGAGAGAAAAATGGAATTTTGCGTTGTCAAATTTGACAGCAAAG : GATCCTTCTATTGTTGCCTAGATCATAGACGAATGTATATTGGAGTTGCTAAGTTGCCTCTGTCGAATAGCTTGGGATTCCAAATACTATTTCCTTGCACATCTAGAAATTGGGATCTGGTATGCAGATTGCAGATCGTCTGTGTCAAATTCAAGCAAGTTTCATCTGTGATGTGATTTTTCTGATAGTTAATTTTTCTTCCCATTTTATTGTGGAATGTGGAGTGGTGTGGTGTGGTGTGGTGAATACAACTATACGAGATTATGTAATTCTTTTGTTTGTAAGCCTTCAAATTCACGATAGTTAGGAGCTTGTATTGATATCATATCTTTCTTGGTGAGGCTGAATTTTATTAGAGAGATTTCAGACTCTTGATGTTTATATTACGATGACATCCAGCATATATTCCACTCTTAGATAAGTTTATTCATATTAATCATTTCATGTTGTTGGTCAATTTACGAA</gDNA_template>
            <first_frame> S  Q  L  S  H  L  Y  L  L  L  F  H  S  G  S  Q  Q  N  K  A  E  R  Y  G  F  Q  T  Q  *  C  R :   R  *  E  Q  Y  E  W  V  M  Y  Q  I  W  Q  L  R  E  R  F  A  S  S  S  R  F  P  A  R  L  T  T  L  R  F  A   : E  N  K  D  N  P  R  L  P  L  L  H  L  K  I  R  K  R  L  K  L  L  C  C  C  R :   E  Q  P  *  W  I  R  L  *  V  *  S  R  Q  K  T  M  F  H  H  L  R  L  G :   K  S  G  *  L  I  M  L  *  M  L  L  E  K  V  L  L  R  L  L  R :   P  N  L  L  L  L  A  M  E  G  *  T  G  K  Y  I  S  V  K  P  K  M  L  S  Q  M  C  W  R  K  V  Q  L  S  D  K  M  Q  *  I  K  P  R  H  L  M  R  N  I  S  *  E  P  L  H  L  L  E  S  F  P  L  T  E  E  L  G  *  Q  K  S  L  R  L  E  F  L  L  *  M  R  K  L  N  L  L  I  K  G  F  K  C  Q  I  K  R  W  L  Q  L  W  Q  Q  N  G  N  *  M  T  Q  D  Q  Q  S  N  Q  A   : G  M  L  M  L  E  L  P  G  *  M  V  L  S  V  K  *  L  R  Q  G  K  L  L  V  Q  K  R  E  K  N  G  I  L  R  C  Q  I  *  Q  Q  R :   I  L  L  L  L  P  R  S  *  T  N  V  Y  W  S  C  *  V  A  S  V  E  *  L  G  I  P  N  T  I  S  L  H  I  *  K  L  G  S  G  M  Q  I  A  D  R  L  C  Q  I  Q  A  S  F  I  C  D  V  I  F  L  I  V  N  F  S  S  H  F  I  V  E  C  G  V  V  W  C  G  V  V  N  T  T  I  R  D  Y  V  I  L  L  F  V  S  L  Q  I  H  D  S  *  E  L  V  L  I  S  Y  L  S  W  *  G  *  I  L  L  E  R  F  Q  T  L  D  V  Y  I  T  M  T  S  S  I  Y  S  T  L  R  *  V  Y  S  Y  *  S  F  H  V  V  G  Q  F  T   </first_frame>
            <second_frame>  L  S  C  H  I  Y  I  F  S  S  S  T  Q  A  H  S  K  T  K  L  R  D  T  D  F  K  L  N  N  A   : G  G  K  N  S  T  S  G  *  C  I  R  S  G  S  *  E  R  G  S  R  V  L  L  V  F  R  R  D  *  P  H  *  D  S  P  :  R  T  R  T  I  Q  D  C  L  C  Y  I  *  R  S  E  S  A  *  N  C  F  V  V  V   : G  S  N  H  S  G  S  D  C  K  Y  K  A  G  R  R  L  C  S  I  I  *  D  S   : G  S  Q  D  S  *  *  C  C  E  C  C  W  R  K  F  F  S  A  C  *   : G  Q  T  Y  F  S  *  Q  W  K  G  E  R  E  S  I  Y  Q  *  S  P  R  C  C  L  K  C  V  G  E  R  F  S  Y  Q  T  R  C  N  E  *  S  Q  G  I  *  *  E  T  S  A  K  S  H  C  I  C  S  S  H  F  L  *  P  K  S  W  A  N  R  K  A  Y  G  W  N  F  C  C  K  *  E  S  *  I  C  *  S  K  A  S  S  V  R  *  N  D  G  C  S  Y  G  S  R  T  E  I  E  *  H  R  I  S  S  Q  I  K  Q  :  V  C  *  C  W  S  C  L  A  E  W  C  F  Q  *  S  S  *  G  R  A  S  C  W  Y  K  N  E  R  K  M  E  F  C  V  V  K  F  D  S  K   : G  S  F  Y  C  C  L  D  H  R  R  M  Y  I  G  V  A  K  L  P  L  S  N  S  L  G  F  Q  I  L  F  P  C  T  S  R  N  W  D  L  V  C  R  L  Q  I  V  C  V  K  F  K  Q  V  S  S  V  M  *  F  F  *  *  L  I  F  L  P  I  L  L  W  N  V  E  W  C  G  V  V  W  *  I  Q  L  Y  E  I  M  *  F  F  C  L  *  A  F  K  F  T  I  V  R  S  L  Y  *  Y  H  I  F  L  G  E  A  E  F  Y  *  R  D  F  R  L  L  M  F  I  L  R  *  H  P  A  Y  I  P  L  L  D  K  F  I  H  I  N  H  F  M  L  L  V  N  L  R  </second_frame>
            <third_frame>   S  A  V  T  F  I  S  S  P  L  P  L  R  L  T  A  K  Q  S  *  E  I  R  I  S  N  S  I  M  Q  :  E  V  R  T  V  R  V  G  N  V  S  D  L  A  A  E  R  E  V  R  E  F  F  S  F  S  G  E  I  D  H  I  E  I  R  R :   E  Q  G  Q  S  K  T  A  F  V  T  F  K  D  P  K  A  L  E  I  A  L  L  L  S  :  G  A  T  I  V  D  Q  I  V  S  I  K  Q  A  E  D  Y  V  P  S  S  E  T  R  :  E  V  R  I  V  D  N  A  V  N  V  A  G  E  S  S  S  P  L  A  E  :  A  K  P  T  S  P  S  N  G  R  V  N  G  K  V  Y  I  S  K  A  Q  D  V  V  S  N  V  L  A  K  G  S  A  I  R  Q  D  A  M  N  K  A  K  A  F  D  E  K  H  Q  L  R  A  T  A  S  A  R  V  I  S  F  D  R  R  V  G  L  T  E  K  L  T  V  G  I  S  V  V  N  E  K  V  K  S  V  D  Q  R  L  Q  V  S  D  K  T  M  A  A  V  M  A  A  E  R  K  L  N  D  T  G  S  A  V  K  S  S  R :   Y  V  N  A  G  A  A  W  L  N  G  A  F  S  K  V  A  K  A  G  Q  V  A  G  T  K  T  R  E  K  W  N  F  A  L  S  N  L  T  A  K  :  D  P  S  I  V  A  *  I  I  D  E  C  I  L  E  L  L  S  C  L  C  R  I  A  W  D  S  K  Y  Y  F  L  A  H  L  E  I  G  I  W  Y  A  D  C  R  S  S  V  S  N  S  S  K  F  H  L  *  C  D  F  S  D  S  *  F  F  F  P  F  Y  C  G  M  W  S  G  V  V  W  C  G  E  Y  N  Y  T  R  L  C  N  S  F  V  C  K  P  S  N  S  R  *  L  G  A  C  I  D  I  I  S  F  L  V  R  L  N  F  I  R  E  I  S  D  S  *  C  L  Y  Y  D  D  I  Q  H  I  F  H  S  *  I  S  L  F  I  L  I  I  S  C  C  W  S  I  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="89617" stop="89646"/>
                    <exon start="89722" stop="89828"/>
                    <exon start="89912" stop="89987"/>
                    <exon start="90872" stop="90943"/>
                    <exon start="91068" stop="91130"/>
                    <exon start="91898" stop="92250"/>
                    <exon start="93494" stop="93617"/>
                    <exon start="94196" stop="94216"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>843</number_coding_nucleotides>
                  <number_encoded_amino_acids>281</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIRISNSIMQEVRTVRVGNVSDLAAEREVREFFSFSGEIDHIEIRREQGQSKTAFVTFKDPKALEIALLLSGATIVDQIVSIKQAEDYVPSSETREVRIVDNAVNVAGESSSPLAEAKPTSPSNGRVNGKVYISKAQDVVSNVLAKGSAIRQDAMNKAKAFDEKHQLRATASARVISFDRRVGLTEKLTVGISVVNEKVKSVDQRLQVSDKTMAAVMAAERKLNDTGSAVKSSRYVNAGAAWLNGAFSKVAKAGQVAGTKTREKWNFALSNLTAKDPSIVA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94302" stop="94502"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLGSGMQIADRLCQIQASFICDVIFLIVNFSSHFIVECGVVWCGVVNTTIRDYVILLFVSLQIHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="99243" PGL_stop="99483"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99243" e_stop="99483"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="99243" e_stop="99483" e_length="241"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U568847" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGTTTCTTTCAATCTTCAGTGCCTACTGCTTTGCATAAAAAATGCATTTTCTGCAGAAGTAATGTGTGATTCCAAGTCCAATGCTATTCTTCTTACCTTTTGGTGTAGTCACAATATCCGTTCTGTACCCTCGTTTCACCTAATTAGATTATTTTGATGTGTACTACATTCATATCTTTGATGAAATTTGATGTACATTACATTTTTTTCTCTTGTTAAAATTACATTACATTAATGAGTA</gDNA_template>
            <first_frame> C  F  F  Q  S  S  V  P  T  A  L  H  K  K  C  I  F  C  R  S  N  V  *  F  Q  V  Q  C  Y  S  S  Y  L  L  V  *  S  Q  Y  P  F  C  T  L  V  S  P  N  *  I  I  L  M  C  T  T  F  I  S  L  M  K  F  D  V  H  Y  I  F  F  S  C  *  N  Y  I  T  L  M  S  </first_frame>
            <second_frame>  V  S  F  N  L  Q  C  L  L  L  C  I  K  N  A  F  S  A  E  V  M  C  D  S  K  S  N  A  I  L  L  T  F  W  C  S  H  N  I  R  S  V  P  S  F  H  L  I  R  L  F  *  C  V  L  H  S  Y  L  *  *  N  L  M  Y  I  T  F  F  S  L  V  K  I  T  L  H  *  *  V </second_frame>
            <third_frame>   F  L  S  I  F  S  A  Y  C  F  A  *  K  M  H  F  L  Q  K  *  C  V  I  P  S  P  M  L  F  F  L  P  F  G  V  V  T  I  S  V  L  Y  P  R  F  T  *  L  D  Y  F  D  V  Y  Y  I  H  I  F  D  E  I  *  C  T  L  H  F  F  L  L  L  K  L  H  Y  I  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0248A13.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="101524" PGL_stop="100052"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="101524" e_stop="100052"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="101524" e_stop="100052" e_length="1473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101524" stop="100052"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584378" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTATGGTAAAATGAAGGTGTACAATCCTCGTATGGGTATGGATGCTCTGCAAGTGTTCCCTATTAGTCGAGCTGCAGCTGACCAGCGTGCTGGTCGAGCTGGTAGAACTGGCCCAGGAACTTGTTACCGGCTTTATACTGAGAATGCGTATGAGAATGAAATGCTGCAAAGTCCCGTGCCAGAGATTCAACGGACAAATCTTGGGAATGTGGTTTTGCTGCTCAAGTCTCTCAAAATTCAGAACCTGTTGGATTTTGATTTTATGGACCCACCTCCTCAGGATAACATCCTTAACTCCATGTATCAGTTGTGGGTATTAGGTGCACTTAACAATGTTGGGGATTTAACAAGCCTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCTCCCCTTGCCAAAATGCTCTTGATGGGAGAACAACTAGAATGTTTAAATGAGGTTCTGACTATTGTTTCTATGCTTTCAGTGCCTTCTGTTTTCTTTAGACCCAAGGATAGGGCTGAGGAAAGTGATGCTGCTAGGGAAAAGTTTTTTGTGCCAGAATCTGATCACCTTACACTGCTTAATGTTTACCAGCAATGGAAAGCTAATCAATACAGAGGGGACTGGTGTAATGACCACTATTTACAGGTCAAAGGTTTACGCAAGGCTAGGGAAGTAAGGTCTCAATTGCTGGATATCCTCAAGACACTTAAAATTCCACTCACTTCCTGTGGTCCTGATTGGGATGTTGTAAGGAAAGCCATCTGCTCTGCGTACTTCCATAATGCAGCTAGGCTGAAAGGAGTTGGGGAATATGTTAATTGCAGGAATGGAATGCCTTGCCACCTTCATCCCACTAGTGCTCTCTATGGATTGGGTTACACTCCTGATAACGTGGTTTATCATGAGCTTATCTTGACATCAAAGGAGTACATGCAGTGTGTGACAGCTGTGGAGCCTCACTGGTTGGCTGAACTGGGGCCCATGTTTTTCTCCGTGAAAGATTCTGATACATCAATGCTGGAACATAAAAAGAAACAGAAAGAGGAGAAAACTGCCATGGAGGAAGAAATGGAGAAGTTGCGTAAAGTACAGGCTGAAGCTGACAGACGAAACAAGGAGAAGGAGAAGGAAAAGAGAGCAAAAGAACTGCAACAGGTTTCTATGCCTGGGTTGAAGAAAGGCTCAACTACTTATTTACGACCCAAGAGGCTCGGTCTGTAAATTACACTTTTTGCTGTAGTTGTTAGATATCTGTTGTGATGATTCTTGTCCCAGTGCAAAAACCACGTACAATTCTTAGCCTATCTCTTAGTCATCCTCAAATTAATTTAGTGGATGGAGATTCAGAGAAGTAAAAATTCAAAAGAAAGTATACAGTGAACAAAAGCATGTATAACTCCTTCATATGGTTATCATCTTTACCCCTTGCAGCCCTGAATTTGACGTGTTTGTATAAGTTTCTTGATAAAACAGTTACATTTTCTCC</gDNA_template>
            <first_frame> A  M  V  K  *  R  C  T  I  L  V  W  V  W  M  L  C  K  C  S  L  L  V  E  L  Q  L  T  S  V  L  V  E  L  V  E  L  A  Q  E  L  V  T  G  F  I  L  R  M  R  M  R  M  K  C  C  K  V  P  C  Q  R  F  N  G  Q  I  L  G  M  W  F  C  C  S  S  L  S  K  F  R  T  C  W  I  L  I  L  W  T  H  L  L  R  I  T  S  L  T  P  C  I  S  C  G  Y  *  V  H  L  T  M  L  G  I  *  Q  A  L  A  G  K  W  W  S  S  H  W  I  L  P  L  P  K  C  S  *  W  E  N  N  *  N  V  *  M  R  F  *  L  L  F  L  C  F  Q  C  L  L  F  S  L  D  P  R  I  G  L  R  K  V  M  L  L  G  K  S  F  L  C  Q  N  L  I  T  L  H  C  L  M  F  T  S  N  G  K  L  I  N  T  E  G  T  G  V  M  T  T  I  Y  R  S  K  V  Y  A  R  L  G  K  *  G  L  N  C  W  I  S  S  R  H  L  K  F  H  S  L  P  V  V  L  I  G  M  L  *  G  K  P  S  A  L  R  T  S  I  M  Q  L  G  *  K  E  L  G  N  M  L  I  A  G  M  E  C  L  A  T  F  I  P  L  V  L  S  M  D  W  V  T  L  L  I  T  W  F  I  M  S  L  S  *  H  Q  R  S  T  C  S  V  *  Q  L  W  S  L  T  G  W  L  N  W  G  P  C  F  S  P  *  K  I  L  I  H  Q  C  W  N  I  K  R  N  R  K  R  R  K  L  P  W  R  K  K  W  R  S  C  V  K  Y  R  L  K  L  T  D  E  T  R  R  R  R  R  K  R  E  Q  K  N  C  N  R  F  L  C  L  G  *  R  K  A  Q  L  L  I  Y  D  P  R  G  S  V  C  K  L  H  F  L  L  *  L  L  D  I  C  C  D  D  S  C  P  S  A  K  T  T  Y  N  S  *  P  I  S  *  S  S  S  N  *  F  S  G  W  R  F  R  E  V  K  I  Q  K  K  V  Y  S  E  Q  K  H  V  *  L  L  H  M  V  I  I  F  T  P  C  S  P  E  F  D  V  F  V  *  V  S  *  *  N  S  Y  I  F  S </first_frame>
            <second_frame>  L  W  *  N  E  G  V  Q  S  S  Y  G  Y  G  C  S  A  S  V  P  Y  *  S  S  C  S  *  P  A  C  W  S  S  W  *  N  W  P  R  N  L  L  P  A  L  Y  *  E  C  V  *  E  *  N  A  A  K  S  R  A  R  D  S  T  D  K  S  W  E  C  G  F  A  A  Q  V  S  Q  N  S  E  P  V  G  F  *  F  Y  G  P  T  S  S  G  *  H  P  *  L  H  V  S  V  V  G  I  R  C  T  *  Q  C  W  G  F  N  K  P  W  L  E  N  G  G  V  P  I  G  S  S  P  C  Q  N  A  L  D  G  R  T  T  R  M  F  K  *  G  S  D  Y  C  F  Y  A  F  S  A  F  C  F  L  *  T  Q  G  *  G  *  G  K  *  C  C  *  G  K  V  F  C  A  R  I  *  S  P  Y  T  A  *  C  L  P  A  M  E  S  *  S  I  Q  R  G  L  V  *  *  P  L  F  T  G  Q  R  F  T  Q  G  *  G  S  K  V  S  I  A  G  Y  P  Q  D  T  *  N  S  T  H  F  L  W  S  *  L  G  C  C  K  E  S  H  L  L  C  V  L  P  *  C  S  *  A  E  R  S  W  G  I  C  *  L  Q  E  W  N  A  L  P  P  S  S  H  *  C  S  L  W  I  G  L  H  S  *  *  R  G  L  S  *  A  Y  L  D  I  K  G  V  H  A  V  C  D  S  C  G  A  S  L  V  G  *  T  G  A  H  V  F  L  R  E  R  F  *  Y  I  N  A  G  T  *  K  E  T  E  R  G  E  N  C  H  G  G  R  N  G  E  V  A  *  S  T  G  *  S  *  Q  T  K  Q  G  E  G  E  G  K  E  S  K  R  T  A  T  G  F  Y  A  W  V  E  E  R  L  N  Y  L  F  T  T  Q  E  A  R  S  V  N  Y  T  F  C  C  S  C  *  I  S  V  V  M  I  L  V  P  V  Q  K  P  R  T  I  L  S  L  S  L  S  H  P  Q  I  N  L  V  D  G  D  S  E  K  *  K  F  K  R  K  Y  T  V  N  K  S  M  Y  N  S  F  I  W  L  S  S  L  P  L  A  A  L  N  L  T  C  L  Y  K  F  L  D  K  T  V  T  F  S   </second_frame>
            <third_frame>   Y  G  K  M  K  V  Y  N  P  R  M  G  M  D  A  L  Q  V  F  P  I  S  R  A  A  A  D  Q  R  A  G  R  A  G  R  T  G  P  G  T  C  Y  R  L  Y  T  E  N  A  Y  E  N  E  M  L  Q  S  P  V  P  E  I  Q  R  T  N  L  G  N  V  V  L  L  L  K  S  L  K  I  Q  N  L  L  D  F  D  F  M  D  P  P  P  Q  D  N  I  L  N  S  M  Y  Q  L  W  V  L  G  A  L  N  N  V  G  D  L  T  S  L  G  W  K  M  V  E  F  P  L  D  P  P  L  A  K  M  L  L  M  G  E  Q  L  E  C  L  N  E  V  L  T  I  V  S  M  L  S  V  P  S  V  F  F  R  P  K  D  R  A  E  E  S  D  A  A  R  E  K  F  F  V  P  E  S  D  H  L  T  L  L  N  V  Y  Q  Q  W  K  A  N  Q  Y  R  G  D  W  C  N  D  H  Y  L  Q  V  K  G  L  R  K  A  R  E  V  R  S  Q  L  L  D  I  L  K  T  L  K  I  P  L  T  S  C  G  P  D  W  D  V  V  R  K  A  I  C  S  A  Y  F  H  N  A  A  R  L  K  G  V  G  E  Y  V  N  C  R  N  G  M  P  C  H  L  H  P  T  S  A  L  Y  G  L  G  Y  T  P  D  N  V  V  Y  H  E  L  I  L  T  S  K  E  Y  M  Q  C  V  T  A  V  E  P  H  W  L  A  E  L  G  P  M  F  F  S  V  K  D  S  D  T  S  M  L  E  H  K  K  K  Q  K  E  E  K  T  A  M  E  E  E  M  E  K  L  R  K  V  Q  A  E  A  D  R  R  N  K  E  K  E  K  E  K  R  A  K  E  L  Q  Q  V  S  M  P  G  L  K  K  G  S  T  T  Y  L  R  P  K  R  L  G  L  *  I  T  L  F  A  V  V  V  R  Y  L  L  *  *  F  L  S  Q  C  K  N  H  V  Q  F  L  A  Y  L  L  V  I  L  K  L  I  *  W  M  E  I  Q  R  S  K  N  S  K  E  S  I  Q  *  T  K  A  C  I  T  P  S  Y  G  Y  H  L  Y  P  L  Q  P  *  I  *  R  V  C  I  S  F  L  I  K  Q  L  H  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101522" stop="100317"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YGKMKVYNPRMGMDALQVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKSLKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLLMGEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHYLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHWLAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRKVQAEADRRNKEKEKEKRAKELQQVSMPGLKKGSTTYLRPKRLGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="106471" PGL_stop="104351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106471" e_stop="106455"/>
            <exon e_start="106340" e_stop="106243"/>
            <exon e_start="106088" e_stop="105980"/>
            <exon e_start="104777" e_stop="104600"/>
            <exon e_start="104499" e_stop="104351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.880" acc_prob="0.669" e_score="1.000"/>
          <exon-intron don_prob="0.796" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106471" e_stop="106455" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="106454" i_stop="106341" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106340" e_stop="106243" e_length="98"/>
          </exon>
          <intron i_serial="2" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="106242" i_stop="106089" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="106088" e_stop="105980" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.880" acc_prob="0.669">
            <gDNA_intron_boundary i_start="105979" i_stop="104778" i_length="1202"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="104777" e_stop="104600" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.796" acc_prob="0.982">
            <gDNA_intron_boundary i_start="104599" i_stop="104500" i_length="100"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="104499" e_stop="104351" e_length="149"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106471" stop="106455"/>
              <exon start="106340" stop="106243"/>
              <exon start="106088" stop="105980"/>
              <exon start="104777" stop="104600"/>
              <exon start="104499" stop="104351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U601337" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGTGCTCTGTCTGAG : GACGGAGGAGATGATACAAATGGTGCCTCTGAAGATCAGAATGAAGAGATTACTGAAAGTATGCGTTTAGAGATGGAGTATAATTCAGATCGTGCCTG : GTATGACCGCGAAGAAGGTAGTACAGTGTTTGAAGGGGATGGTTCATCAGCATTTCTAGGTGATGAGGCATCTTTCCAGAAGAAAGAGGTGGAATTGGCCAAAAAACTG : GTTCGTAGAGATGGAAGCAAGATGTCACTTGCTCAAAGTAAAAGGTTATCACAGCTCACTGCAGACAATGCTCAATGGGAGGACCGCCAGCTTTTGAGATCTGGAGCTGTTAGAGGTACCGAGGTGCAGACGGAGTTTGATGATGAGGATGAACGGAAGGTTATTCTTCTTGTTCACG : ATACAAAGCCTCCCTTTTTGGATGGAAGAATTGTTTTCACCAAGCAAGCTGAGCCGATAATGCCAATAAAGGACCCAACTTCAGATATGGCCATAATTTCACGTAAAGGCTCAGCTCTAGTTCGGGAAATACGTGAAAAACAAAACATG</gDNA_template>
            <first_frame> E  V  L  C  L  R :   T  E  E  M  I  Q  M  V  P  L  K  I  R  M  K  R  L  L  K  V  C  V  *  R  W  S  I  I  Q  I  V  P   : G  M  T  A  K  K  V  V  Q  C  L  K  G  M  V  H  Q  H  F  *  V  M  R  H  L  S  R  R  K  R  W  N  W  P  K  N  W :   F  V  E  M  E  A  R  C  H  L  L  K  V  K  G  Y  H  S  S  L  Q  T  M  L  N  G  R  T  A  S  F  *  D  L  E  L  L  E  V  P  R  C  R  R  S  L  M  M  R  M  N  G  R  L  F  F  L  F  T  :  I  Q  S  L  P  F  W  M  E  E  L  F  S  P  S  K  L  S  R  *  C  Q  *  R  T  Q  L  Q  I  W  P  *  F  H  V  K  A  Q  L  *  F  G  K  Y  V  K  N  K  T   </first_frame>
            <second_frame>  R  C  S  V  *   : G  R  R  R  *  Y  K  W  C  L  *  R  S  E  *  R  D  Y  *  K  Y  A  F  R  D  G  V  *  F  R  S  C  L  :  V  *  P  R  R  R  *  Y  S  V  *  R  G  W  F  I  S  I  S  R  *  *  G  I  F  P  E  E  R  G  G  I  G  Q  K  T   : G  S  *  R  W  K  Q  D  V  T  C  S  K  *  K  V  I  T  A  H  C  R  Q  C  S  M  G  G  P  P  A  F  E  I  W  S  C  *  R  Y  R  G  A  D  G  V  *  *  *  G  *  T  E  G  Y  S  S  C  S  R :   Y  K  A  S  L  F  G  W  K  N  C  F  H  Q  A  S  *  A  D  N  A  N  K  G  P  N  F  R  Y  G  H  N  F  T  *  R  L  S  S  S  S  G  N  T  *  K  T  K  H  </second_frame>
            <third_frame>   G  A  L  S  E  :  D  G  G  D  D  T  N  G  A  S  E  D  Q  N  E  E  I  T  E  S  M  R  L  E  M  E  Y  N  S  D  R  A  W :   Y  D  R  E  E  G  S  T  V  F  E  G  D  G  S  S  A  F  L  G  D  E  A  S  F  Q  K  K  E  V  E  L  A  K  K  L  :  V  R  R  D  G  S  K  M  S  L  A  Q  S  K  R  L  S  Q  L  T  A  D  N  A  Q  W  E  D  R  Q  L  L  R  S  G  A  V  R  G  T  E  V  Q  T  E  F  D  D  E  D  E  R  K  V  I  L  L  V  H   : D  T  K  P  P  F  L  D  G  R  I  V  F  T  K  Q  A  E  P  I  M  P  I  K  D  P  T  S  D  M  A  I  I  S  R  K  G  S  A  L  V  R  E  I  R  E  K  Q  N  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106469" stop="106455"/>
                    <exon start="106340" stop="106243"/>
                    <exon start="106088" stop="105980"/>
                    <exon start="104777" stop="104600"/>
                    <exon start="104499" stop="104351"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GALSEDGGDDTNGASEDQNEEITESMRLEMEYNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAEPIMPIKDPTSDMAIISRKGSALVREIREKQNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="112761" PGL_stop="114097"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112761" e_stop="112943"/>
            <exon e_start="113487" e_stop="114097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.937" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112761" e_stop="112943" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.937" acc_prob="0.934">
            <gDNA_intron_boundary i_start="112944" i_stop="113486" i_length="543"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="113487" e_stop="114097" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112761" stop="112943"/>
              <exon start="113487" stop="114097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565413" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGTAATGGTATTGGATATCCATTTTTATACATAGAATTTTGGGTCTATGAATATTAATTTATTAATAGTATTCTCTGTATGGATTGAGTTTCAGTTTCTGGGGTTTTGTTCTTTTTATAGGTGAATGTTGCTGCATGCAACCTAATGGATTCTGACTGATTCTTCCATTTTTACAGTTTACTG : TTGAGAACGTTGACACATTGATATTGGTGAATGGTAATTCAAGAAATGGGATCTCGGGGGGGAGGTGAAGCAAAGGCAAATGCTTTAGCTACGCAAGGATCACTCTACAGCCTCACTCTTGATGAAGTTCGGAATCAATTGGGGAATTGTGGGAAACCACTCAATAGCATGAACCTTGACGAGTTTGTTAAAACTGTATGGACTATCGAGTCTAATCAAGAAGTGGTGGGGGGAAATGATTACGGGCCAGTGCAGCAAGGGGCTTCTCAGCATCATCCATCGAGCATTACAATGTCCAGGGATCTCAGCAAGAAGACTGTTGATGAGGTGTGGCAAGATATTCAGCAGGGGGTAAAAATAGATAATGTTGATAAGAGAAGCCAGGAGAGGCAACTAACTTTAGGTGAGATAACTCTGGAGGATTTCTTGGTCAAGGCTGGAGTGATTGCCGAGTCGACCCAAGGCAAGAGAATTTCGGGTTTAGTTTTTGGGGTTGATTCAATGTCATTGACACAGCAAGCTCAGTGGACGCACTATCAAATCCCCGCAATGCAACAGGTACCAGAACAGCAGCATCAACAACAACAGCAGAATATACCACCAGTTTTTAT</gDNA_template>
            <first_frame> G  N  G  I  G  Y  P  F  L  Y  I  E  F  W  V  Y  E  Y  *  F  I  N  S  I  L  C  M  D  *  V  S  V  S  G  V  L  F  F  L  *  V  N  V  A  A  C  N  L  M  D  S  D  *  F  F  H  F  Y  S  L  L  :  L  R  T  L  T  H  *  Y  W  *  M  V  I  Q  E  M  G  S  R  G  G  G  E  A  K  A  N  A  L  A  T  Q  G  S  L  Y  S  L  T  L  D  E  V  R  N  Q  L  G  N  C  G  K  P  L  N  S  M  N  L  D  E  F  V  K  T  V  W  T  I  E  S  N  Q  E  V  V  G  G  N  D  Y  G  P  V  Q  Q  G  A  S  Q  H  H  P  S  S  I  T  M  S  R  D  L  S  K  K  T  V  D  E  V  W  Q  D  I  Q  Q  G  V  K  I  D  N  V  D  K  R  S  Q  E  R  Q  L  T  L  G  E  I  T  L  E  D  F  L  V  K  A  G  V  I  A  E  S  T  Q  G  K  R  I  S  G  L  V  F  G  V  D  S  M  S  L  T  Q  Q  A  Q  W  T  H  Y  Q  I  P  A  M  Q  Q  V  P  E  Q  Q  H  Q  Q  Q  Q  Q  N  I  P  P  V  F   </first_frame>
            <second_frame>  V  M  V  L  D  I  H  F  Y  T  *  N  F  G  S  M  N  I  N  L  L  I  V  F  S  V  W  I  E  F  Q  F  L  G  F  C  S  F  Y  R  *  M  L  L  H  A  T  *  W  I  L  T  D  S  S  I  F  T  V  Y  C :   *  E  R  *  H  I  D  I  G  E  W  *  F  K  K  W  D  L  G  G  E  V  K  Q  R  Q  M  L  *  L  R  K  D  H  S  T  A  S  L  L  M  K  F  G  I  N  W  G  I  V  G  N  H  S  I  A  *  T  L  T  S  L  L  K  L  Y  G  L  S  S  L  I  K  K  W  W  G  E  M  I  T  G  Q  C  S  K  G  L  L  S  I  I  H  R  A  L  Q  C  P  G  I  S  A  R  R  L  L  M  R  C  G  K  I  F  S  R  G  *  K  *  I  M  L  I  R  E  A  R  R  G  N  *  L  *  V  R  *  L  W  R  I  S  W  S  R  L  E  *  L  P  S  R  P  K  A  R  E  F  R  V  *  F  L  G  L  I  Q  C  H  *  H  S  K  L  S  G  R  T  I  K  S  P  Q  C  N  R  Y  Q  N  S  S  I  N  N  N  S  R  I  Y  H  Q  F  L  </second_frame>
            <third_frame>   *  W  Y  W  I  S  I  F  I  H  R  I  L  G  L  *  I  L  I  Y  *  *  Y  S  L  Y  G  L  S  F  S  F  W  G  F  V  L  F  I  G  E  C  C  C  M  Q  P  N  G  F  *  L  I  L  P  F  L  Q  F  T   : V  E  N  V  D  T  L  I  L  V  N  G  N  S  R  N  G  I  S  G  G  R  *  S  K  G  K  C  F  S  Y  A  R  I  T  L  Q  P  H  S  *  *  S  S  E  S  I  G  E  L  W  E  T  T  Q  *  H  E  P  *  R  V  C  *  N  C  M  D  Y  R  V  *  S  R  S  G  G  G  K  *  L  R  A  S  A  A  R  G  F  S  A  S  S  I  E  H  Y  N  V  Q  G  S  Q  Q  E  D  C  *  *  G  V  A  R  Y  S  A  G  G  K  N  R  *  C  *  *  E  K  P  G  E  A  T  N  F  R  *  D  N  S  G  G  F  L  G  Q  G  W  S  D  C  R  V  D  P  R  Q  E  N  F  G  F  S  F  W  G  *  F  N  V  I  D  T  A  S  S  V  D  A  L  S  N  P  R  N  A  T  G  T  R  T  A  A  S  T  T  T  A  E  Y  T  T  S  F  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113517" stop="114095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVIQEMGSRGGGEAKANALATQGSLYSLTLDEVRNQLGNCGKPLNSMNLDEFVKTVWTIESNQEVVGGNDYGPVQQGASQHHPSSITMSRDLSKKTVDEVWQDIQQGVKIDNVDKRSQERQLTLGEITLEDFLVKAGVIAESTQGKRISGLVFGVDSMSLTQQAQWTHYQIPAMQQVPEQQHQQQQQNIPPVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="118744" PGL_stop="116428"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="118744" e_stop="118386"/>
            <exon e_start="117774" e_stop="117650"/>
            <exon e_start="116934" e_stop="116428"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.992"/>
          <exon-intron don_prob="0.416" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="118744" e_stop="118386" e_length="359"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="118385" i_stop="117775" i_length="611"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="117774" e_stop="117650" e_length="125"/>
          </exon>
          <intron i_serial="2" don_prob="0.416" acc_prob="1.000">
            <gDNA_intron_boundary i_start="117649" i_stop="116935" i_length="715"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="116934" e_stop="116428" e_length="507"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="118744" stop="118386"/>
              <exon start="117774" stop="117650"/>
              <exon start="116934" stop="116428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586029" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACATTTTCCTCTTCCGGTAACCAGAACCACCACCAACTTCCAATCTCCACCGCCCCATTTCAGAATCAGGGAACCCAAATCTCAAGTTTGATGAACTCACTCAAATCCTTCCTCAAGAAACCCCATGCTTTCCCTTTTCTCCTATCCCTTTTCCTTTTTCTCACATGGGTTTCACTCAGATTCCAACATCCTTCAACTTCTAACCCTCAACGAGAAGAGTGGCATGCTAAGGTTCAATCTGGGTCCGATCAAAATGCTAATCTTGTCAGGTTTTCAGCTTCTTCTTCTTCGATTGCCAAAGATAAACGTGGATGGTTGATCAATCCTATTTCCCTTGCCCTTGATTCTGCCATTTCAG : GTGGGGCAGCAGTTTGTGCTTCAGTTCATTTGGGTGAGATCAGATCTGGTGGTCTTAGAGGCAACCACAGACACCATACATGCAATGAGACATTTGTTATTTGGGGAGCTAAGACAGTATTCCGG : GTGGAAAATGATGCGGTAGAAAAAGGTTACGCGGAAGTGATAATTGGTGCAGATGAAGTTGCTGTTGCAGTCAGCCCCCTTGGAACTGCCCATGCTCTAGTAAATGTTGATCCGGGGCGAAGTACATACTTCATGGGGTGCCAGGATAGCGTAATCAACTACAATGGCTCAACGACTGATTTTAATGTATGGAAGGATCTATAAGTTCCCATTGTTATATTCTCATGGTTGCGCCAATAAGGCAACTGAAGTTTAATGCGTTTGCATCAGGCTGGTAATTTTTTCTTGCAGATGAGGGTTTTGAAGGGTGTGATTAGTCTAGCTAGTGTAGATTAGGAAACAGTGTACATAAGGCATAGCTGCTAATCATTGGCCTTTTTTTGTTCTTTCCCTTTTGGGTTTTATGACAAAAAGATGTGAGCTCAGACATATATCTACTGGATACAGCTTGCCTGTCCGACAGGCTTTATATATGAAAGCAGTATTTAAGCTCTTGAAATTTAGCAG</gDNA_template>
            <first_frame> N  I  F  L  F  R  *  P  E  P  P  P  T  S  N  L  H  R  P  I  S  E  S  G  N  P  N  L  K  F  D  E  L  T  Q  I  L  P  Q  E  T  P  C  F  P  F  S  P  I  P  F  P  F  S  H  M  G  F  T  Q  I  P  T  S  F  N  F  *  P  S  T  R  R  V  A  C  *  G  S  I  W  V  R  S  K  C  *  S  C  Q  V  F  S  F  F  F  F  D  C  Q  R  *  T  W  M  V  D  Q  S  Y  F  P  C  P  *  F  C  H  F  R :   W  G  S  S  L  C  F  S  S  F  G  *  D  Q  I  W  W  S  *  R  Q  P  Q  T  P  Y  M  Q  *  D  I  C  Y  L  G  S  *  D  S  I  P   : G  G  K  *  C  G  R  K  R  L  R  G  S  D  N  W  C  R  *  S  C  C  C  S  Q  P  P  W  N  C  P  C  S  S  K  C  *  S  G  A  K  Y  I  L  H  G  V  P  G  *  R  N  Q  L  Q  W  L  N  D  *  F  *  C  M  E  G  S  I  S  S  H  C  Y  I  L  M  V  A  P  I  R  Q  L  K  F  N  A  F  A  S  G  W  *  F  F  L  A  D  E  G  F  E  G  C  D  *  S  S  *  C  R  L  G  N  S  V  H  K  A  *  L  L  I  I  G  L  F  L  F  F  P  F  W  V  L  *  Q  K  D  V  S  S  D  I  Y  L  L  D  T  A  C  L  S  D  R  L  Y  I  *  K  Q  Y  L  S  S  *  N  L  A  </first_frame>
            <second_frame>  T  F  S  S  S  G  N  Q  N  H  H  Q  L  P  I  S  T  A  P  F  Q  N  Q  G  T  Q  I  S  S  L  M  N  S  L  K  S  F  L  K  K  P  H  A  F  P  F  L  L  S  L  F  L  F  L  T  W  V  S  L  R  F  Q  H  P  S  T  S  N  P  Q  R  E  E  W  H  A  K  V  Q  S  G  S  D  Q  N  A  N  L  V  R  F  S  A  S  S  S  S  I  A  K  D  K  R  G  W  L  I  N  P  I  S  L  A  L  D  S  A  I  S   : G  G  A  A  V  C  A  S  V  H  L  G  E  I  R  S  G  G  L  R  G  N  H  R  H  H  T  C  N  E  T  F  V  I  W  G  A  K  T  V  F  R  :  V  E  N  D  A  V  E  K  G  Y  A  E  V  I  I  G  A  D  E  V  A  V  A  V  S  P  L  G  T  A  H  A  L  V  N  V  D  P  G  R  S  T  Y  F  M  G  C  Q  D  S  V  I  N  Y  N  G  S  T  T  D  F  N  V  W  K  D  L  *  V  P  I  V  I  F  S  W  L  R  Q  *  G  N  *  S  L  M  R  L  H  Q  A  G  N  F  F  L  Q  M  R  V  L  K  G  V  I  S  L  A  S  V  D  *  E  T  V  Y  I  R  H  S  C  *  S  L  A  F  F  C  S  F  P  F  G  F  Y  D  K  K  M  *  A  Q  T  Y  I  Y  W  I  Q  L  A  C  P  T  G  F  I  Y  E  S  S  I  *  A  L  E  I  *  Q </second_frame>
            <third_frame>   H  F  P  L  P  V  T  R  T  T  T  N  F  Q  S  P  P  P  H  F  R  I  R  E  P  K  S  Q  V  *  *  T  H  S  N  P  S  S  R  N  P  M  L  S  L  F  S  Y  P  F  S  F  F  S  H  G  F  H  S  D  S  N  I  L  Q  L  L  T  L  N  E  K  S  G  M  L  R  F  N  L  G  P  I  K  M  L  I  L  S  G  F  Q  L  L  L  L  R  L  P  K  I  N  V  D  G  *  S  I  L  F  P  L  P  L  I  L  P  F  Q  :  V  G  Q  Q  F  V  L  Q  F  I  W  V  R  S  D  L  V  V  L  E  A  T  T  D  T  I  H  A  M  R  H  L  L  F  G  E  L  R  Q  Y  S  G :   W  K  M  M  R  *  K  K  V  T  R  K  *  *  L  V  Q  M  K  L  L  L  Q  S  A  P  L  E  L  P  M  L  *  *  M  L  I  R  G  E  V  H  T  S  W  G  A  R  I  A  *  S  T  T  M  A  Q  R  L  I  L  M  Y  G  R  I  Y  K  F  P  L  L  Y  S  H  G  C  A  N  K  A  T  E  V  *  C  V  C  I  R  L  V  I  F  S  C  R  *  G  F  *  R  V  *  L  V  *  L  V  *  I  R  K  Q  C  T  *  G  I  A  A  N  H  W  P  F  F  V  L  S  L  L  G  F  M  T  K  R  C  E  L  R  H  I  S  T  G  Y  S  L  P  V  R  Q  A  L  Y  M  K  A  V  F  K  L  L  K  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="118743" stop="118386"/>
                    <exon start="117774" stop="117650"/>
                    <exon start="116934" stop="116731"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFSSSGNQNHHQLPISTAPFQNQGTQISSLMNSLKSFLKKPHAFPFLLSLFLFLTWVSLRFQHPSTSNPQREEWHAKVQSGSDQNANLVRFSASSSSIAKDKRGWLINPISLALDSAISGGAAVCASVHLGEIRSGGLRGNHRHHTCNETFVIWGAKTVFRVENDAVEKGYAEVIIGADEVAVAVSPLGTAHALVNVDPGRSTYFMGCQDSVINYNGSTTDFNVWKDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="122278" PGL_stop="119853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122278" e_stop="122054"/>
            <exon e_start="121928" e_stop="121841"/>
            <exon e_start="121710" e_stop="121625"/>
            <exon e_start="121524" e_stop="121417"/>
            <exon e_start="120927" e_stop="120883"/>
            <exon e_start="120788" e_stop="120700"/>
            <exon e_start="120072" e_stop="120029"/>
            <exon e_start="119924" e_stop="119853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.991" e_score="0.982"/>
          <exon-intron don_prob="0.952" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.756" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="122278" e_stop="122054" e_length="225"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.991">
            <gDNA_intron_boundary i_start="122053" i_stop="121929" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121928" e_stop="121841" e_length="88"/>
          </exon>
          <intron i_serial="2" don_prob="0.952" acc_prob="0.974">
            <gDNA_intron_boundary i_start="121840" i_stop="121711" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="121710" e_stop="121625" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.756">
            <gDNA_intron_boundary i_start="121624" i_stop="121525" i_length="100"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="121524" e_stop="121417" e_length="108"/>
          </exon>
          <intron i_serial="4" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="121416" i_stop="120928" i_length="489"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120927" e_stop="120883" e_length="45"/>
          </exon>
          <intron i_serial="5" don_prob="0.970" acc_prob="0.972">
            <gDNA_intron_boundary i_start="120882" i_stop="120789" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="120788" e_stop="120700" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.976">
            <gDNA_intron_boundary i_start="120699" i_stop="120073" i_length="627"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="120072" e_stop="120029" e_length="44"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="120028" i_stop="119925" i_length="104"/>
          </intron>
          <exon e_serial="8" e_score="0.944">
            <gDNA_exon_boundary e_start="119924" e_stop="119853" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122278" stop="122054"/>
              <exon start="121928" stop="121841"/>
              <exon start="121710" stop="121625"/>
              <exon start="121524" stop="121417"/>
              <exon start="120927" stop="120883"/>
              <exon start="120788" stop="120700"/>
              <exon start="120072" stop="120029"/>
              <exon start="119924" stop="119853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600076" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGACACTTCACAAGCATAACAAAATAAAACAAGATAAAAATAACTTTCAAGAGGCTGTTGAAGGATCTCCAGATGAATCAAATGGATTAAATGTGTCTCAGAACATAAATCCTTCTGAACGCAGAGCCCCTAGCTCTCAAAAAAGCCTTCTGATGAATTGGCCCTTAATGTCTTCTATTATTGTCTACTGTGTATTCCAGCTCCACGATATAGCCTATTTGGAG : ATATTTTCACTCTGGGCTGTTAGTCCAAGGACCCTTGGGGGTTTAAGCTTCACAACTTCTGATGTTGGACAAGTTCTTGCCATCACAG : GCATTGGTTTGCTACTCTTTCAGCTGCTTGTTTATCCACTGGTGGAAAGGATTACTGGGCCTGTCATGATTTCTCGGATCGGTGCA : GTTTTAAGCATACCTTTATTGGCTAGCTACCCATATATAGCTTTATTAACTGGTTTTGGCCTCTCCATAGCTCTCAACTGTGCATCTATGTTAAAGAATATTCTCTCG : GTATCAATTACAACTGGCTTACTAATCATGCAGAATAGAGCTGTG : TCCCAGGAGCAAAGAGGAGCTGCAAATGGCATTTCAATGTCCTCAATGTCGCTTTTCAAGACAATTGGCCCTGCAGCCGGGGGCTCATT : ATTGTCCTGGTCACAACGGCGTCTAGATGCTGATATTCTGCCTG : GTGATCAGTTGGTGTTCTTTGTTCTCAACGCCATTGAGTTGCTCGGCCTACTTCTGACCCTCAGACCCTTTC</gDNA_template>
            <first_frame> E  T  L  H  K  H  N  K  I  K  Q  D  K  N  N  F  Q  E  A  V  E  G  S  P  D  E  S  N  G  L  N  V  S  Q  N  I  N  P  S  E  R  R  A  P  S  S  Q  K  S  L  L  M  N  W  P  L  M  S  S  I  I  V  Y  C  V  F  Q  L  H  D  I  A  Y  L  E  :  I  F  S  L  W  A  V  S  P  R  T  L  G  G  L  S  F  T  T  S  D  V  G  Q  V  L  A  I  T   : G  I  G  L  L  L  F  Q  L  L  V  Y  P  L  V  E  R  I  T  G  P  V  M  I  S  R  I  G  A  :  V  L  S  I  P  L  L  A  S  Y  P  Y  I  A  L  L  T  G  F  G  L  S  I  A  L  N  C  A  S  M  L  K  N  I  L  S  :  V  S  I  T  T  G  L  L  I  M  Q  N  R  A  V  :  S  Q  E  Q  R  G  A  A  N  G  I  S  M  S  S  M  S  L  F  K  T  I  G  P  A  A  G  G  S  L :   L  S  W  S  Q  R  R  L  D  A  D  I  L  P   : G  D  Q  L  V  F  F  V  L  N  A  I  E  L  L  G  L  L  L  T  L  R  P  F  </first_frame>
            <second_frame>  R  H  F  T  S  I  T  K  *  N  K  I  K  I  T  F  K  R  L  L  K  D  L  Q  M  N  Q  M  D  *  M  C  L  R  T  *  I  L  L  N  A  E  P  L  A  L  K  K  A  F  *  *  I  G  P  *  C  L  L  L  L  S  T  V  Y  S  S  S  T  I  *  P  I  W  R :   Y  F  H  S  G  L  L  V  Q  G  P  L  G  V  *  A  S  Q  L  L  M  L  D  K  F  L  P  S  Q  :  A  L  V  C  Y  S  F  S  C  L  F  I  H  W  W  K  G  L  L  G  L  S  *  F  L  G  S  V  Q :   F  *  A  Y  L  Y  W  L  A  T  H  I  *  L  Y  *  L  V  L  A  S  P  *  L  S  T  V  H  L  C  *  R  I  F  S  R :   Y  Q  L  Q  L  A  Y  *  S  C  R  I  E  L  C :   P  R  S  K  E  E  L  Q  M  A  F  Q  C  P  Q  C  R  F  S  R  Q  L  A  L  Q  P  G  A  H   : Y  C  P  G  H  N  G  V  *  M  L  I  F  C  L  :  V  I  S  W  C  S  L  F  S  T  P  L  S  C  S  A  Y  F  *  P  S  D  P  F </second_frame>
            <third_frame>   D  T  S  Q  A  *  Q  N  K  T  R  *  K  *  L  S  R  G  C  *  R  I  S  R  *  I  K  W  I  K  C  V  S  E  H  K  S  F  *  T  Q  S  P  *  L  S  K  K  P  S  D  E  L  A  L  N  V  F  Y  Y  C  L  L  C  I  P  A  P  R  Y  S  L  F  G   : D  I  F  T  L  G  C  *  S  K  D  P  W  G  F  K  L  H  N  F  *  C  W  T  S  S  C  H  H  R :   H  W  F  A  T  L  S  A  A  C  L  S  T  G  G  K  D  Y  W  A  C  H  D  F  S  D  R  C   : S  F  K  H  T  F  I  G  *  L  P  I  Y  S  F  I  N  W  F  W  P  L  H  S  S  Q  L  C  I  Y  V  K  E  Y  S  L   : G  I  N  Y  N  W  L  T  N  H  A  E  *  S  C   : V  P  G  A  K  R  S  C  K  W  H  F  N  V  L  N  V  A  F  Q  D  N  W  P  C  S  R  G  L  I  :  I  V  L  V  T  T  A  S  R  C  *  Y  S  A  W :   *  S  V  G  V  L  C  S  Q  R  H  *  V  A  R  P  T  S  D  P  Q  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0248A13.2" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122278" stop="122054"/>
                    <exon start="121928" stop="121841"/>
                    <exon start="121710" stop="121625"/>
                    <exon start="121524" stop="121417"/>
                    <exon start="120927" stop="120883"/>
                    <exon start="120788" stop="120700"/>
                    <exon start="120072" stop="120029"/>
                    <exon start="119924" stop="119854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETLHKHNKIKQDKNNFQEAVEGSPDESNGLNVSQNINPSERRAPSSQKSLLMNWPLMSSIIVYCVFQLHDIAYLEIFSLWAVSPRTLGGLSFTTSDVGQVLAITGIGLLLFQLLVYPLVERITGPVMISRIGAVLSIPLLASYPYIALLTGFGLSIALNCASMLKNILSVSITTGLLIMQNRAVSQEQRGAANGISMSSMSLFKTIGPAAGGSLLSWSQRRLDADILPGDQLVFFVLNAIELLGLLLTLRPF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 38536 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2028 bytes was the average size of a spliced alignment
$ 23544 bytes predicted gene locations in total
$ 15 predicted gene locations have been stored
$ 1569 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 57 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:28:15
-->
