<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:11:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E587918" ref_strand="+" ref_description="SGN-E587918 [41460]">
      <seq>ggtggatgtaactaaccaggtgggggttgatcttaatttggctataagtcatgaatggctatttcccccgctgcaatttatttcggggctgggtcccagaaaggctgcatctcttcaaagatccttggtaagacagcagacaatcttcacgaggaaggatctcttaactgaacatcatcttggtaaaaaggtatttgttaatgcagttggcttcttgcgagtacggcgcagtggatacactgcaaatagcaatacatatattgatttgttggatgatacaaggatccatccagaatcctatagtcttgcacaggagttggcaaaagatatttatcttaaagacatgggtgaagaaaataatgatgatgatgaagtgcttgaaatggcaatagagcatgttaaagagaagccacatttgttgaggttggttaatgcttatgaatatgctgaagataaggatcgttttaataaaagggaaacccttaatggtataaagttggagctaatgcaagggtttcaagattggcgtagacagtatgtggagccaagccaggatgaagagttctatatgatttctggtgagtctgaggagacgctttctgagggaagaatcgtgcaggcaacagttcgtcgggttcaacctcagaaagctatctgttctctcgagtgtggattgactggtattctttccaaggaagattcttcagatgattggagagatgtcaatgatttgacctgaaaaaatgcgtgaaggtgatatcttaacttgcagaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="-" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="7175" stop="5802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6875" g_stop="6102" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="-" ref_id="SGN-E587918" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6875" e_stop="6102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATGTAACTAACCAGGTGGGTGTTGATCTTAATTTGGCTATAAGTCATGAATGGCTTTTTGCCCCACTGCAATTTATTTCGGGGCTGGGTCCCAGAAAGGCAGCATCTCTTCAAAGATCCATGGTAAGACAGCAGACAATCTTTACGAGGAAGGATCTCTTAACTGAACATCATCTTGGTAAAAAGGTATTTATCAATGCAGTTGGCTTCTTGCGAGTACGGCGCAGTGGATACACTGCAAATAGCAATACATATATTGATTTGTTGGATGATACAAGGATCCATCCAGAATCCTATACTCTTGCACAAGAGTTGGCAAAAGATATTTATCTTAAAGACATGGGTGAAGAAGCTAATGATGATGATGAAGTGCTTGAAATGGCAATAGAGCATGTTAAAGAGAAGCCACATTTGTTGAGGTTGGTTAATGCTTATGAATATGCTAATGAACATAACCGTTTTGATAAAAGGGAAACCCTTAATGGTATTAAGTTGGAGCTAATGCAAGGGTTTCAAGATTGGCGTAGACAGTATGTCGAGCCAAGCCAGGATGAAGAGTTCTATATGATTTCTGGTGAGTCTGAGGATACGCTTTCTGAGGGAAGAATCGTGCAGGCAACAGTTCGTCGGGTTCAACCTCAGAAAGCTATCTGTTCTTTGGAGTGTGGATTGACTGGTATTCTTTCCAAGGAAGACTCTTCAGATGATTGGAGAGATGTCAATGATTTGA-CTGAAAAAATGCGTGAAGGTGATATCCTAACTTGCAGAAT</genome_strand>
        <mrna_strand>GGTGGATGTAACTAACCAGGTGGGGGTTGATCTTAATTTGGCTATAAGTCATGAATGGCTATTTCCCCCGCTGCAATTTATTTCGGGGCTGGGTCCCAGAAAGGCTGCATCTCTTCAAAGATCCTTGGTAAGACAGCAGACAATCTTCACGAGGAAGGATCTCTTAACTGAACATCATCTTGGTAAAAAGGTATTTGTTAATGCAGTTGGCTTCTTGCGAGTACGGCGCAGTGGATACACTGCAAATAGCAATACATATATTGATTTGTTGGATGATACAAGGATCCATCCAGAATCCTATAGTCTTGCACAGGAGTTGGCAAAAGATATTTATCTTAAAGACATGGGTGAAGAAAATAATGATGATGATGAAGTGCTTGAAATGGCAATAGAGCATGTTAAAGAGAAGCCACATTTGTTGAGGTTGGTTAATGCTTATGAATATGCTGAAGATAAGGATCGTTTTAATAAAAGGGAAACCCTTAATGGTATAAAGTTGGAGCTAATGCAAGGGTTTCAAGATTGGCGTAGACAGTATGTGGAGCCAAGCCAGGATGAAGAGTTCTATATGATTTCTGGTGAGTCTGAGGAGACGCTTTCTGAGGGAAGAATCGTGCAGGCAACAGTTCGTCGGGTTCAACCTCAGAAAGCTATCTGTTCTCTCGAGTGTGGATTGACTGGTATTCTTTCCAAGGAAGATTCTTCAGATGATTGGAGAGATGTCAATGATTTGACCTGAAAAAATGCGTGAAGGTGATATCTTAACTTGCAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E201395" ref_strand="+" ref_description="SGN-E201395 [cLEC-4-L17]">
      <seq>aaacactcaccacctgttgtcattcccaaaatccaacctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccagagtttgttcttgaagttatggggtttgttggcagttgttcttgctgtagctgtggctgtaaaggggaattcaaaaagggatgctttgtacgccctccgccggagcttatctgacccgggtaacgtgttacagagctgggatccaaatcttgttaacccttgtacctggtttcatgtcacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15092" stop="16051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15392" g_stop="15751" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E201395" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>360</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15392" e_stop="15751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACTCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTTGC</genome_strand>
        <mrna_strand>AAACACTCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCC-AAAAAAAATT-CTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAAAAAGGGATGCTTTGTACGCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E319586" ref_strand="+" ref_description="SGN-E319586 [cTOB-15-H20]">
      <seq>actcaccacctgttgtcattcgcagaatccaagctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccacagtttgttcttgaagttatggggttcggtggcagttgttcttgctgaagctgaggctgtaaaggggaattcagaacgggatgctttgtacaccctacggcggagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15096" stop="15976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15396" g_stop="15676" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E319586" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15396" e_stop="15676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCGGAGCTTA</genome_strand>
        <mrna_strand>ACTCACCACCTGTTGTCATTCGCAGAATCCAAGCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAA-AAAAAATT-CTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCACAGTTTGTTCTTGAAGTTATGGGGTTCGGTGGCAGTTGTTCTTGCTGAAGCTGAGGCTGTAAAGGGGAATTCAGAACGGGATGCTTTGTACACCCTACGGCGGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E339756" ref_strand="+" ref_description="SGN-E339756 [cTOE-16-J19]">
      <seq>ctgttgtcattcccaaaatccaaccctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaaccccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccagagtttgttcttgaagttatggggtttgttggcagttgttcttgctgtagctgtggctgtaaaggggaattcagaaggggatgctttgtcccccctccgccggagcttatctgacccgggtaacgtgttacagagctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15105" stop="16007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15405" g_stop="15707" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E339756" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15405" e_stop="15707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTGTCATTCCCAAAATCCAA-CCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAA-CCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGG</genome_strand>
        <mrna_strand>CTGTTGTCATTCCCAAAATCCAACCCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAA-TT-CTCCATAAAATTCTAAGCAAAACCCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTCCCCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262256" ref_strand="+" ref_description="SGN-E262256 [cLEG-56-G4]">
      <seq>tgtcattcccaaaatccaacctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccagagtttgttcttgaagttatggggtttgttggcagttgttcttgctgtagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15109" stop="15920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15409" g_stop="15620" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E262256" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15409" e_stop="15620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTG</genome_strand>
        <mrna_strand>TGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAA-AATT-CTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258694" ref_strand="+" ref_description="SGN-E258694 [cLEG-50-N1]">
      <seq>cattcccaaaatccaacctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccagagtttgttcttgaagttatggggtttgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15112" stop="15899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15412" g_stop="15599" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E258694" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15412" e_stop="15599"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGG</genome_strand>
        <mrna_strand>CATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAA-TT-CTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203985" ref_strand="+" ref_description="SGN-E203985 [cLEC-22-O14]">
      <seq>caaaatccaacctttttactcctactttcctctatatttcttccttcttcttctccaaaaaaaattctccataaaattctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccacagtttgttcttgaagttatggggtttgttggcagttgttcttgctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15118" stop="15915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15418" g_stop="15615" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E203985" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15418" e_stop="15615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGT</genome_strand>
        <mrna_strand>CAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCC-AAAAAAAATT-CTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCACAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286096" ref_strand="+" ref_description="SGN-E286096 [cLES-13-M8]">
      <seq>ctaagcaaaacccataaattttctttgatttttgagtattaataaccatggaagctgtgttcaaaacccagagtttgttcttgaagttatggggtttgttggcagttgttcttgctgtagctgtggctgtaaaggggaattcagaaggggatgctttgtacgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0256L16-28EYW/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0256L16.1" temp_strand="+" temp_description="C10HBa0256L16.1  AC233130.1 htgs_phase:1 submitted_to_sgn_as:AC233130 Solanum lycopersicum strain Heinz 1706 clone hba-256l16, WORKING DRAFT SEQUENCE, 6 unordered pieces.">
        <position start="15198" stop="15961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15498" g_stop="15661" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0256L16.1" gen_strand="+" ref_id="SGN-E286096" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>164</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0256L16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15498" e_stop="15661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCC</genome_strand>
        <mrna_strand>CTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6875" PGL_stop="6102"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6875" e_stop="6102"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="6875" e_stop="6102" e_length="774"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6875" stop="6102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587918" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGATGTAACTAACCAGGTGGGTGTTGATCTTAATTTGGCTATAAGTCATGAATGGCTTTTTGCCCCACTGCAATTTATTTCGGGGCTGGGTCCCAGAAAGGCAGCATCTCTTCAAAGATCCATGGTAAGACAGCAGACAATCTTTACGAGGAAGGATCTCTTAACTGAACATCATCTTGGTAAAAAGGTATTTATCAATGCAGTTGGCTTCTTGCGAGTACGGCGCAGTGGATACACTGCAAATAGCAATACATATATTGATTTGTTGGATGATACAAGGATCCATCCAGAATCCTATACTCTTGCACAAGAGTTGGCAAAAGATATTTATCTTAAAGACATGGGTGAAGAAGCTAATGATGATGATGAAGTGCTTGAAATGGCAATAGAGCATGTTAAAGAGAAGCCACATTTGTTGAGGTTGGTTAATGCTTATGAATATGCTAATGAACATAACCGTTTTGATAAAAGGGAAACCCTTAATGGTATTAAGTTGGAGCTAATGCAAGGGTTTCAAGATTGGCGTAGACAGTATGTCGAGCCAAGCCAGGATGAAGAGTTCTATATGATTTCTGGTGAGTCTGAGGATACGCTTTCTGAGGGAAGAATCGTGCAGGCAACAGTTCGTCGGGTTCAACCTCAGAAAGCTATCTGTTCTTTGGAGTGTGGATTGACTGGTATTCTTTCCAAGGAAGACTCTTCAGATGATTGGAGAGATGTCAATGATTTGACTGAAAAAATGCGTGAAGGTGATATCCTAACTTGCAGAAT</gDNA_template>
            <first_frame> G  G  C  N  *  P  G  G  C  *  S  *  F  G  Y  K  S  *  M  A  F  C  P  T  A  I  Y  F  G  A  G  S  Q  K  G  S  I  S  S  K  I  H  G  K  T  A  D  N  L  Y  E  E  G  S  L  N  *  T  S  S  W  *  K  G  I  Y  Q  C  S  W  L  L  A  S  T  A  Q  W  I  H  C  K  *  Q  Y  I  Y  *  F  V  G  *  Y  K  D  P  S  R  I  L  Y  S  C  T  R  V  G  K  R  Y  L  S  *  R  H  G  *  R  S  *  *  *  *  *  S  A  *  N  G  N  R  A  C  *  R  E  A  T  F  V  E  V  G  *  C  L  *  I  C  *  *  T  *  P  F  *  *  K  G  N  P  *  W  Y  *  V  G  A  N  A  R  V  S  R  L  A  *  T  V  C  R  A  K  P  G  *  R  V  L  Y  D  F  W  *  V  *  G  Y  A  F  *  G  K  N  R  A  G  N  S  S  S  G  S  T  S  E  S  Y  L  F  F  G  V  W  I  D  W  Y  S  F  Q  G  R  L  F  R  *  L  E  R  C  Q  *  F  D  *  K  N  A  *  R  *  Y  P  N  L  Q  N </first_frame>
            <second_frame>  V  D  V  T  N  Q  V  G  V  D  L  N  L  A  I  S  H  E  W  L  F  A  P  L  Q  F  I  S  G  L  G  P  R  K  A  A  S  L  Q  R  S  M  V  R  Q  Q  T  I  F  T  R  K  D  L  L  T  E  H  H  L  G  K  K  V  F  I  N  A  V  G  F  L  R  V  R  R  S  G  Y  T  A  N  S  N  T  Y  I  D  L  L  D  D  T  R  I  H  P  E  S  Y  T  L  A  Q  E  L  A  K  D  I  Y  L  K  D  M  G  E  E  A  N  D  D  D  E  V  L  E  M  A  I  E  H  V  K  E  K  P  H  L  L  R  L  V  N  A  Y  E  Y  A  N  E  H  N  R  F  D  K  R  E  T  L  N  G  I  K  L  E  L  M  Q  G  F  Q  D  W  R  R  Q  Y  V  E  P  S  Q  D  E  E  F  Y  M  I  S  G  E  S  E  D  T  L  S  E  G  R  I  V  Q  A  T  V  R  R  V  Q  P  Q  K  A  I  C  S  L  E  C  G  L  T  G  I  L  S  K  E  D  S  S  D  D  W  R  D  V  N  D  L  T  E  K  M  R  E  G  D  I  L  T  C  R   </second_frame>
            <third_frame>   W  M  *  L  T  R  W  V  L  I  L  I  W  L  *  V  M  N  G  F  L  P  H  C  N  L  F  R  G  W  V  P  E  R  Q  H  L  F  K  D  P  W  *  D  S  R  Q  S  L  R  G  R  I  S  *  L  N  I  I  L  V  K  R  Y  L  S  M  Q  L  A  S  C  E  Y  G  A  V  D  T  L  Q  I  A  I  H  I  L  I  C  W  M  I  Q  G  S  I  Q  N  P  I  L  L  H  K  S  W  Q  K  I  F  I  L  K  T  W  V  K  K  L  M  M  M  M  K  C  L  K  W  Q  *  S  M  L  K  R  S  H  I  C  *  G  W  L  M  L  M  N  M  L  M  N  I  T  V  L  I  K  G  K  P  L  M  V  L  S  W  S  *  C  K  G  F  K  I  G  V  D  S  M  S  S  Q  A  R  M  K  S  S  I  *  F  L  V  S  L  R  I  R  F  L  R  E  E  S  C  R  Q  Q  F  V  G  F  N  L  R  K  L  S  V  L  W  S  V  D  *  L  V  F  F  P  R  K  T  L  Q  M  I  G  E  M  S  M  I  *  L  K  K  C  V  K  V  I  S  *  L  A  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0256L16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6874" stop="6104"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VDVTNQVGVDLNLAISHEWLFAPLQFISGLGPRKAASLQRSMVRQQTIFTRKDLLTEHHLGKKVFINAVGFLRVRRSGYTANSNTYIDLLDDTRIHPESYTLAQELAKDIYLKDMGEEANDDDEVLEMAIEHVKEKPHLLRLVNAYEYANEHNRFDKRETLNGIKLELMQGFQDWRRQYVEPSQDEEFYMISGESEDTLSEGRIVQATVRRVQPQKAICSLECGLTGILSKEDSSDDWRDVNDLTEKMREGDILTCR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15392" PGL_stop="15751"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15392" e_stop="15751"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="15392" e_stop="15751" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15392" stop="15751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15396" stop="15676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15405" stop="15707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15409" stop="15620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262256" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15412" stop="15599"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15418" stop="15615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15498" stop="15661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286096" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACACTCACCACCTGTTGTCATTCCCAAAATCCAACCTTTTTACTCCTACTTTCCTCTATATTTCTTCCTTCTTCTTCTCCAAAAAAAAATTACTCCATAAAATTCTAAGCAAAACCCATAAATTTTCTTTGATTTTTGAGTATTAATAACCATGGAAGCTGTGTTCAAAACCCAGAGTTTGTTCTTGAAGTTATGGGGTTTGTTGGCAGTTGTTCTTGCTGTAGCTGTGGCTGTAAAGGGGAATTCAGAAGGGGATGCTTTGTACGCCCTCCGCCGGAGCTTATCTGACCCGGGTAACGTGTTACAGAGCTGGGATCCAAATCTTGTTAACCCTTGTACCTGGTTTCATGTCACTTGC</gDNA_template>
            <first_frame> K  H  S  P  P  V  V  I  P  K  I  Q  P  F  Y  S  Y  F  P  L  Y  F  F  L  L  L  L  Q  K  K  I  T  P  *  N  S  K  Q  N  P  *  I  F  F  D  F  *  V  L  I  T  M  E  A  V  F  K  T  Q  S  L  F  L  K  L  W  G  L  L  A  V  V  L  A  V  A  V  A  V  K  G  N  S  E  G  D  A  L  Y  A  L  R  R  S  L  S  D  P  G  N  V  L  Q  S  W  D  P  N  L  V  N  P  C  T  W  F  H  V  T  C </first_frame>
            <second_frame>  N  T  H  H  L  L  S  F  P  K  S  N  L  F  T  P  T  F  L  Y  I  S  S  F  F  F  S  K  K  K  L  L  H  K  I  L  S  K  T  H  K  F  S  L  I  F  E  Y  *  *  P  W  K  L  C  S  K  P  R  V  C  S  *  S  Y  G  V  C  W  Q  L  F  L  L  *  L  W  L  *  R  G  I  Q  K  G  M  L  C  T  P  S  A  G  A  Y  L  T  R  V  T  C  Y  R  A  G  I  Q  I  L  L  T  L  V  P  G  F  M  S  L   </second_frame>
            <third_frame>   T  L  T  T  C  C  H  S  Q  N  P  T  F  L  L  L  L  S  S  I  F  L  P  S  S  S  P  K  K  N  Y  S  I  K  F  *  A  K  P  I  N  F  L  *  F  L  S  I  N  N  H  G  S  C  V  Q  N  P  E  F  V  L  E  V  M  G  F  V  G  S  C  S  C  C  S  C  G  C  K  G  E  F  R  R  G  C  F  V  R  P  P  P  E  L  I  *  P  G  *  R  V  T  E  L  G  S  K  S  C  *  P  L  Y  L  V  S  C  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0256L16.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15533" stop="15751"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLITMEAVFKTQSLFLKLWGLLAVVLAVAVAVKGNSEGDALYALRRSLSDPGNVLQSWDPNLVNPCTWFHVTC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 82 chains have been computed
$ 
$ memory statistics:
$ 16576 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2072 bytes was the average size of a spliced alignment
$ 6704 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3352 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 82 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:12:38
-->
