<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:29:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E203362" ref_strand="+" ref_description="SGN-E203362 [cLEB-3-P3](-)">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="32390" stop="22459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23248" g_stop="22760" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E203362" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23248" e_stop="22760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGACTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGTAAAAGCTACACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAACATCTGGAGCTTATCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAACTCTATAAAGGAATTGGTGTGTTGTGTTAGAAGTTTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTGTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAG-AAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTT-TTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCTCTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E546563" ref_strand="+" ref_description="SGN-E546563 [TUS-69-P22](-)">
      <seq>aactcaaatgttactttaactgtaaatgttatttgtagttttgatgatttgacaaacaatgggacctcataaaggtatcaggttctctaattgtgtattgcaggtgtcttgtttgaggtattgcagaagaaacaaaaccagggacctagtagaggtaccaggctctcatgaaaatgagtcagtcgactgccagctggagatggtacagaaagtaggtgcacacttcccgatggcgtcagaaaagtgtgaccttttcagcaaatggcaaaggagtttaggaaagtgacttgcccacataaaaggcactttccaaaacatttgttttttagtttttgcaacttgataaaaacttttcaagaacacttgcaaaggctacacaaaaggtagaatcattccaagaacaacagcaacatcttgagcttgtcgtatagttgtttaggaatttattctcttgttgttaaattgtaaaccactgctaaatctataaaggaattggtgtgttgtgtaaaagtctaggttgtccaagtgggatagcttagtgggtagattgtttttctacttaggcttgttgagcaatagaggactattgtttaacggtaagattgataactctttcttacgtttggtgaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="32579" stop="22505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24148" g_stop="24128" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="0.571"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24127" i_stop="23421" i_length="707">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23420" g_stop="22809" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="627" r_length="607" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="629" polyA_stop="648"/>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E546563" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24148" e_stop="24128"/>
          <exon e_start="23420" e_stop="22809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCAGAGGCTTACCAAAAAGCAAGATGGCTCAACTTCTTGAGGACCTGAATCAGCTTAAACATGAGACTGAAGAACTCACTGTGCGGTTGAGTAGTAAAGAGGCTGAAATTGCTGTACTCAAAGCAGAGCTGCTTTCTGCACAGAGTGAGGGACCTGGTTCTTTAGTTGTACAAGCTCTGGAGAAAGAGAACAATGAGTTGAAGGCGAAGATAATTGCCCTGCAAGAAAAGGCCATCAAGGATAATGATGCTGCCAATGCACGACTCGCTCTTGTTATCCAGTCCCTATCTCAAACTCCCCCCTTCCTAAATTGTCAATAAATCCTTCCCTGTGTCATTTTTTTGTGGCTGATCATCGTGTTGATGGATTTTTAGTTTGTCTTTAATGTATTTATGTTATAATGACATGTTGGTTACTTTATTCCTTTGCTGTTCTTCCTATGTTCTTTTGTGATTTCTCTTCCTCTACTGTTTGATTGCTTATTAGCTCTGATCTTACTCAGTATTTATGTTGACTCAATGGTTTACTGCACATCTTTTCTATGATGCCAAAAAGGGGAAGTAAACTGTTAGTAGCTAAATAAGGGGGAAGTAAGCTGTTAGTAGCTAAACAAGGGGGAAGTAATCTGTTAGTACCTAAATAAGGGGGAATATACAGTAAGGGGGAATACACTGTCAAGGGGAACAGATCTCAGATCATATCATTGTTGTAATCATCAAAAAGGGGGAAAATGTTATTTGTAGTTTTGATGATTTGACAAACTTAGGGACCTCATGAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTCTTGTTTGAAGTATTGCAGATGAAACAAACCCTGGGACCTAGTAGAGGTACCAGGATCTCATGATGATGAGCCAGTCGACTGCCAGCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGACTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGTAAAAGCTACACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAACATCTGGAGCTTATCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAACTCTATAAAGGAATTGGTGTGTTGTGTTAGAAGTTTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</genome_strand>
        <mrna_strand>AACTCAAATG-TTACTTTAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAATGTTATTTGTAGTTTTGATGATTTGACAAACAATGGGACCTCATAAAGGTATCAGGTTCTCTAATTGTGTATTGCAGGTGTCTTGTTTGAGGTATTGCAGAAGAAACAAAACCAGGGACCTAGTAGAGGTACCAGGCTCTCATGAAAATGAGTCAGTCGACTGCCAGCTGGAGATGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTTCAGCAAATGGCAAAGGAGTTTAGGAAAGTGACTTGCCCACATAAAAGGCACTTTCCAAAACATTTGTTTTTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACACTTGCAAAGGCTACAC--A--AAAGGTAGAATCATTCCAAGAACAACAGCAACATCTTGAGCTTGTCGTATAGTTGTTTAGGAATTTATTCTCTTGTTGTTAAATTGTAAACCACTGCTAAATCTATAAAGGAATTGGTGTGTTGTG-TAAAAGTCTAGGTTGTCCAAGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGTTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E402013" ref_strand="+" ref_description="SGN-E402013 [PPC-6-C7]">
      <seq>caaaagttacgaaaagattttaaaaagagtttcaattgttagtacaataagtaatattcaatacctagattatgtactctttgtctctttctaatatttgtattgtacaatttatttatttgaataaatatacggctattcgccttgattttcttttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="48846" stop="48103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48564" g_stop="48403" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E402013" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>162</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48564" e_stop="48403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTACGAAAAGA-CTTAAAAAGAAATGCAATTATTAGTACAATAATTAATATTAAATACCTACATTATGTACTCTTTATCTATTTCTAATATTTGTATTGTACAATTTAATTATTTGAATAAATATACGGCTATTCGCCTTGATTTTCTTTTAAAATA</genome_strand>
        <mrna_strand>CAAAAGTTACGAAAAGATTTTAAAAAGAGTTTCAATTGTTAGTACAATAAGTAATATTCAATACCTAGATTATGTACTCTTTGTCTCTTTCTAATATTTGTATTGTACAATTTATTTATTTGAATAAATATACGGCTATTCGCCTTGATTTTCTTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700476" ref_strand="+" ref_description="SGN-E700476 [FA13BA02]">
      <seq>gccttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaggccctccatttgttacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccagcaccatctccttattccacagcctcgcctccttcagcattttatccagcttctccttattccacagtcccaccacctccagcagcatatcattcaacatctctttatccccctcaatcggctgcttatccttcaccttactcatcatctgcgtatctgcctcagccttatccaccacagggttactcttatcccccaggtcaataccctggagtctatcctccccgatcgtattgatgctatgttcttaaatgcctggacaaggattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71083" stop="68421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70783" g_stop="70714" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="175" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="302" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="374" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="420" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69192" g_stop="68874" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="739" r_length="319" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="68873" i_stop="68792" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="68791" g_stop="68721" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="810" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E700476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70783" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68874"/>
          <exon e_start="68791" e_stop="68721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAGGTAAATCTTGTAAGATGTGAATTTCTTACTCTCCCCTGGTATGTCAATTACGGTTAACTATTTATTTTTGTTGTCTTGCCAGGTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGT</genome_strand>
        <mrna_strand>GCCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAG..................................................................................GTCAATACCCTGGAGTCTATCCTCCCCGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352827" ref_strand="+" ref_description="SGN-E352827 [cTOS-11-C2]">
      <seq>ttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaggccctccatttgttacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccagcaccatctccttattccacagcctcgcctccttcagcattttatccagcttctccttattccacagtcccaccacctccagcagcatatcattcaacatctctttatccccctcaatcggctgcttatccttcaccttactcatcatctgcgtatccgcctcagccttatccaccacagggttactcttatcccccangtcaataccctggagtctatcctccacgatcgtattgatgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="70721" stop="68448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70421" g_stop="70316" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="178" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="224" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69192" g_stop="68874" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="543" r_length="319" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68873" i_stop="68792" i_length="82">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68791" g_stop="68748" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="587" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E352827" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70421" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68874"/>
          <exon e_start="68791" e_stop="68748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAGGTAAATCTTGTAAGATGTGAATTTCTTACTCTCCCCTGGTATGTCAATTACGGTTAACTATTTATTTTTGTTGTCTTGCCAGGTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTAT</genome_strand>
        <mrna_strand>TTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCCGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAN..................................................................................GTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E215105" ref_strand="+" ref_description="SGN-E215105 [cLEC-78-L17]">
      <seq>ggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaggccctccatttgttacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccagcaccatctccttattccacagcctcgcctccttcagcattttatccagcttctccttattccacagtcccaccacctccagcagcatatcattcaacatctctttatcccccctcatcggctgcttatccttcaccttactcatcatctgcgtatccgcctcagccttatccaccacagggttactcttatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="70895" stop="68577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70595" g_stop="70524" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="199" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="271" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="317" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69192" g_stop="68877" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="633" r_length="316" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E215105" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70595" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCC</genome_strand>
        <mrna_strand>GGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCCTCATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCCGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E310182" ref_strand="+" ref_description="SGN-E310182 [cLEZ-8-M14]">
      <seq>tcatcgttgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaggccctccatttgttacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaacaccttctggctatccagcaccatctccttattccacagcctcgcctccttcagcattttatccagcttctccttattccacagtcccaccacctccagcagcatatcattcaacatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71091" stop="68672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70791" g_stop="70714" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="183" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="310" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="382" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="428" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69192" g_stop="68972" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="649" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E310182" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70791" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATC</genome_strand>
        <mrna_strand>TCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E567215" ref_strand="+" ref_description="SGN-E567215 [11306]">
      <seq>ccaaattcctcctcattgtcgtctctgtcttcttctacgtctatgtcgataccatatggcatccaaggccaactccttgaagttactgttgttgcttgtaataaattgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggcagttctaaattccgtactcgtacatgtacagatggtggaaaaaaccctacgtttcaagagaaatttgtgtttacgctcattgaagggttgcgagagatcaacgttgttgtgtggaatagcaatactgttaattcagatgatttgatagggaacggaaaggttcaactacagaaggttctctcacaggggatttgatgatactgcttggccacttcagacgaagaagggcaggcatgcaggagaagttcgactaataatgcactatgcaaatgccaataagccagcaacaagccatgctcaatcaggccctccatatgtaacaccaactcctggatcatatccatattcagtagctccaccacatgtagcttctcacccaccaccttctggctatccagcaccatctccttattccacagccccagctccttcagcatattatccagcttctccttatcccacagtccaaccccttcagcaacatatcatacagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71062" stop="68673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70803" g_stop="70714" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="193" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="320" r_length="127" r_score="0.937"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.983" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="393" r_length="73" r_score="0.944"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="439" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69192" g_stop="68973" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="658" r_length="219" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E567215" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70803" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="68973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTCCTCGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACA-GGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACAT</genome_strand>
        <mrna_strand>CCAAATTCCTCCTCATTGTCGTC-TCTGTCTTCTTCTAC-GTCTATGTCGATACCATATGGCATCCAAGGCCAACTCCTTGAAGTTACTG.....................................................................................TTGTTGCTTGTAATAAATTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGCAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGTGGAAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTACGCTCATTGAAGGGTTGCGAGAGATCAACGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTGATAGGGAACGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGGATTTGATGATACTGCTTGGCCACTTCAGACGAAGAAGGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATGCCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATATGTAACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCACCACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCCCAGCTCCTTCAGCATATTATCCAGCTTCTCCTTATCCCACAGTCCAACC-CCTTCAGCAACATATCATACAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287722" ref_strand="+" ref_description="SGN-E287722 [cLES-9-F6]">
      <seq>tgtcttctttcttcttctactttccatgtcgatagcatatggcatccaaggccaactccttgaagtaactgttgttgcttgtaataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatactgcttggccacttcagaggaagaacggcaggcatgcaggagaagttcgactaataatgcactatgcaaataccaataagccagcaacaagccatgctcaatcaagccctccatttgttacaccaactcctggatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="71084" stop="68831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70784" g_stop="70714" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70628" g_stop="70524" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="176" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="303" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70200" g_stop="70129" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="375" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69332" g_stop="69287" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="421" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69192" g_stop="69131" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="483" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E287722" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70784" e_stop="70714"/>
          <exon e_start="70628" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70129"/>
          <exon e_start="69332" e_stop="69287"/>
          <exon e_start="69192" e_stop="69131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTGGTACGAACTTCATTCAACTACAGCTAAAATACTGAGATTTTATGAATTACTTTTCATTATTTACTTTGAATTTTCGTTTTTGTAGTTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAGGTATATTGATAAAAACAACTGCTATTTCTTGATGAATTTTGCTATGGTCTTTCTTTTACGGCGAGAATTGTGTTTATAGTCCTTCTAAGTTTGAATTTGTATCTTTTTTTGTTTGTTTTCTTTGACAAAATGTTCTACATTGTGATTCCACTCTTTCATGTGACATTAATATGACAATTTGCGACACCAAGGTCTGGGATGTATGGATATGATGTGATTCTTTTCATTCATCACTGAAGTTCTTCATTTCATCATTATTGATTAACATAGACCTGTCTATAACTAGCCATCAACTTACTTCCGGACAGTGATGCAGGTGGAACTTAAGCTTTCATAAGCTATTTGTATTCTGTAAAAGTGTTGAATTTTTTTTTGTTCAACTTTCTCCCTGTTAATTGTCTACTTCTGGTAGTCAAAGGGGTCATGGATCAGCTCTTTCTACAAAGAGCCTTATAGACCTTTAGGCATACTAGACACAATTGGGTCACATGTTGGCTTCAAGTTTGGTGAAGAATTAGGGGTAGTTGAGGTTCAATATACTAGATATGAGGCGAGGAATTATTGATTACCTTGCAGGATATAAGTTGAGTCAACAGGAGGTGTAATTTGTTTTCTCACATAAAAGGTATTTAGTCAGCACACCAAGTACTGATACTGGTGGATTCATGGGGGCTATAAAGATTTTTTCTTGATAGTATTTGTGAGGTCATTGGAGACGAATGAAGAGAGCAGCTTTTTCAACACTTGTGTATTCCTAATGAAATCACAGTGTAACAGAAGTATATTTCTTTTACAGGCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAATGTAAGTGCCGCCGTCTTTTCTTAGAATTTCCTTCTTGCTTCCCACCCCAAAAATCTTTTAATGTCTTTAACATGAATTTCTCTTTTACTTCCAGAAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATA</genome_strand>
        <mrna_strand>TGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG.....................................................................................TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT..............................................................................................AAGCCAGCAACAAGCCATGCTCAATCAAGCCCTCCATTTGTTACACCAACTCCTGGATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259116" ref_strand="+" ref_description="SGN-E259116 [cLEG-41-B2]">
      <seq>ctgcaggataaactgaaggatactgaatggatttcaaggcaagatccgtatgtttgccttgaatacggaagttctaaattccgtactcgtacatgtacagatggcggtaaaaaccctacgtttcaagagaaatttgtgtttaagctaattgaagggttgcgagagatcaatgttgttgtgtggaatagcaatactgttaattcagatgattttatagggagtggaaaggttcaactacagaaggttctctcacagggatttgatgatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="70916" stop="69858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70625" g_stop="70524" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70442" g_stop="70316" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="227" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70200" g_stop="70158" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="270" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E259116" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70625" e_stop="70524"/>
          <exon e_start="70442" e_stop="70316"/>
          <exon e_start="70200" e_stop="70158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAGGTACAAATTGAATGGATTTATATCTGTTAACTATCATTTTTGGTGAATTTTGATGAGATTCATGCTTTTGTTTGTATGTAGATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAAGTAAGTCTCAATTTGTTTTCTCTTGACTGATTTGGATTTGTTGTTGAGTTGATTGAATGATCTATTTAGTTTGTTAGTTGAGTGTTAATGATTAAATTATTTAATTTAATTCTAGGGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACT</genome_strand>
        <mrna_strand>CTGC-AG-GATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG.................................................................................ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA...................................................................................................................GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E554121" ref_strand="+" ref_description="SGN-E554121 [cTSC-3-E3]">
      <seq>aaaaagcctggtcatattccagaatgtcaatttagagagctcctcaaatattggaattctgaaaaattcaagaaaatgtctgaaacaaatgcaaagaatcgaaagaaaatgatgaatccacaaactactggcaaaaagagtttcgctttagttcgtaataagctggagaaagataaggagacagtatcatctaaggatctctttgtggttacaagaacaagaaaacctggtcgtttgtacaaggcctcaaatgaagatactactataggctgaaatggaggaaattgaaaaacaaataagcataaatggtgagtatgttgatgcattttcaagcgtcatgggtcctgaacatccgggacgtctaagactatatggcgcaggagttacaaagactactttgaaaaaaaaagttggcaattcggaatcaactttaagtgcaacaactgatggaatgcagcaaatgcaagagaggatgcagaaaatggagaaacagatggaggaacaaaagaaaattgtgcgacaagaagttattgcagatgttattgcacaacttaagcatgcaggattaattgatcctaatatattggcaacattgtcgactccttcaccaagagaatctacttttgtttaaggggctaaacaaggtgatgaaatcgaagaaagggatgaaagcagtagtgaagacttgacataggagctgaagtatatattgatgtaaactttattgatgttctagaaatcatatatttttgaagattgaaaattctatggcatggtgttcaccttttttggattctataaaaagatttgtatattttggatcttgaattctaattaaggtaatgaacatttattctcgttaacgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="96608" stop="93416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96308" g_stop="96237" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="96236" i_stop="95645" i_length="592">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95644" g_stop="95552" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="165" r_length="93" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95551" i_stop="95457" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.829" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95456" g_stop="95359" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="265" r_length="100" r_score="0.908"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="95358" i_stop="95277" i_length="82">
            <donor d_prob="0.680" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="95276" g_stop="94898" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="644" r_length="379" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="94897" i_stop="93961" i_length="937">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="93960" g_stop="93787" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="818" r_length="174" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E554121" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96308" e_stop="96237"/>
          <exon e_start="95644" e_stop="95552"/>
          <exon e_start="95456" e_stop="95359"/>
          <exon e_start="95276" e_stop="94898"/>
          <exon e_start="93960" e_stop="93787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAGGTAAAATTGTAGTTCAGAATCTCAATTTTTTGAATAAGTAGCATTTATATTATAGCTCCTGATTTTTGCTCCCTTCCCAGCTTCTTCCCACCTAGTAACCCCCAACACTTCAAAGCTGTTAGAAAAAATAGTACCAGCCTGCATAACCTTCTCTTTGACTGCTACAGAAGTAAATCAAAACATATAGTAACCATCTGAATAGTATAGGTAGTAAAGCATCTGGATAAAGTGCCAACACTGTCTGCTATGACATAATTGTCCATAGTGTGATATCGGTGTTGCTGACATATTACCTGAGGCTTGGTTGGTACTTTAGTGTCTAAAGTAGTGTGATAATAGTATATATTCTGCTTTATTTTTTCTTCTACTCTCTTCTCTATTGTAATATTTTGCAGCTTCTTTCTTTATTTATTGTGATAGTCACATGAATTTTACCAGACACCTTAACACTATATAATGACTAATATTGACAGATTGTTATAAAGGAAAAATAGACTGTTATAAAGGAAAGACAGACTAATATTGACCTCGTCTAGTACACTATATAAACTAATATACCTTTGATTAACATTACTGATTCATTTCTTTGCAGAAAATGTCTGAAACAAATGCAATGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTGGTGAGTTCTCTTATATATTATTTTTTAATGAAATTTTCTTTTGGATCTCTTCCAGTGTGAGTTTATTTTATATATATATATTTCAATTTGACTAGGAGAAAGATAATGAGATAGTATAATCTAAGGA--TCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAACGCCTCAAATGAAGATACTATTAGTAAATTGTATGTGCCTGTCTATTTTTTTTATTGAGATCAATTGTTTATTTCATAAGATTGTGTTTGTTGGATATGCTTTGGTAGCCTGAAATGGAGGAAATTCAAAAACAAATAAGCATAAATGATGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCATGAACATCCAGGACGTCTAACACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGAAATTTGGAATCAATTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAAGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGTAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTTATCCTAACATATTGGAAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTCAAGGGGCTAAACAAGGTTAGTGTCGCTAATTCTATGTTTTGATTGGTATTTGTTGTTGCTACTTGCTATAGGATTAGAATGGAATAGTATGCTATTGATCTAAGGAAGTTGGGGAAAAGTTAGGCAAAGGATCATTATATGCCTGATTCTTGATTTTAATTTCTGAGTTGCTGCTTGTTCTCTGATAGTTTAATGTCTGAGTTGCTTCTTGTAGTCTGGTTCATGAGTTTTCTGGTGCTGCTTGTAGCCTAGTAAAGGACCAGTTGTTAGATTCATGATTTTTTTTTGATACTTGCTGCTTGTAGTTTGGTTTCTTGTGGTTTCTTCTTTATGTTAATTAAACATGTCTCTTGTAGCATGATAGTGTTGTTTCTACTGCTTATAGTTTGGACTCTTGTTTTTGCTGCTGGTCTCTTGTTTCTGGTGCTGGTTTCTTGTAGCATTATAGTGTTGAATCCTAGCTTCACAATTATGTTTAGTCGAGCCAACATAGTAGCTAATAACTTCATGTATAGTCTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGTATAGTAGTCTGGTCTCTTGTTTCTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGAAGCTGAATGTTATTGGCATGTATAGTAGTCTAGTCTCTTGTTTCTGCTGCTACTTGTAGAAGTTTGAATGCAGCTAGCATTTGAATGTTATTGGCATGTATAGCGTAGTCTGGTCTCTTGTTTTTGCTGCTGCTTGTAGAAGTTTGAATGCAGCTAGCAGTTGAATGTTATTGGCATGTACTTGGTTTCCATGTTTTAGGGTTGAACAATTCTAAAAGCTAATGCATGGTTGTAACTACATGTATACTTGTTAATTTCCAAGATTTGAGGTTTGCTAAATTATTTATATTTTTTTCTGATTATATGTAGGTGATGAAATCGAAGAAGGCGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTTAATGCTATAAAAAGATTTGTATATTTT</genome_strand>
        <mrna_strand>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTCTGAAACAAATGCAAAGAATCGAAAGAAAATGATGAATCCACAAACTACTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG...............................................................................................GAGAAAGATAAGGAGACAGTATCATCTAAGGATCTCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAAGGCCTCAAATGAAGATACTACTA..................................................................................TAGGCTGAAATGGAGGAAATTGAAAAACAAATAAGCATAAATGGTGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCCTGAACATCCGGGACGTCTAAGACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGCAATTCGGAATCAACTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAGGATGCAGAAAATGGAGAAACAGATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGCAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTGATCCTAATATATTGGCAACATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTTAAGGGGCTAAACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGAAATCGAAGAAAGGGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGGTGTTCACCTTTTTTGGATTCTATAAAAAGATTTGTATATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E707636" ref_strand="+" ref_description="SGN-E707636 [FA33CC07]">
      <seq>cattcaatcttccttttaaactttggattgattttgacattgtttattttgaaagtaaattataagtactatctcctaacctatcgttagtgggaaagtcaaaggaagtatgaggtctagttccaattttttaaacccgacgcatcctcggaagtatcacctacccatgaatttcaaaaggaattatgtgcatttatatgtaaatgtttatgtgcctacatgtaaactagatcttttaaatcatttttttcaaaaatataaactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgatcaacaatatcgtggcatcatccctacaaagaaacaaacatttttttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctcgaggcatgcctaacaccttcccctcgaggtaatttgaacccttaccctaatctctggctcgttgaccttagttagacttaattaggttagataggtgccctaacgcgcctaaattcgttaggtggcgactccaaactcgaaaatcgaaaagagttgttaggtggcgcacaaaacccattttttgcgaaaatggggcgtgacactgtgacaacaaagttgcaatacaaatagcttcaaatcccatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="130398" stop="120711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121900" g_stop="121017" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="875" r_length="875" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E707636" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121900" e_stop="121017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGACATCATCCCTATAAAGAAACAAA-A-TTTTTTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATATATTGAATGAGATACGGCCGGGACCCATGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGTCTCGTTGACCTTAGTTAGACTTATTTAGGTTATATAGGTGCCCTAACGCGCCTTAATTCATTAGGTTGCAACTCCAAACCCGAAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTTTCTGCGAAAATGGAGC</genome_strand>
        <mrna_strand>CATTCAATCTTCCTTTTAAACTTTGGATTGATTTTGACATTGTTTATTTTGAAAGTAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAAGTATGAGGTCTAGTTCCAATTTTTTAAACCCGACGCATCCTCGGAAGTATCACCTACCCATGAATTTCAAAAGGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACATGTAAACTAGATCTTTTAAATCA-TTTTTTTCAAAAATATAAACTA-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTTTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCA-AAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTT-AAAT-AAAT----A-A-AAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGCATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCTAACGCGCCTAAATTCGTTAGGTGGCGACTCCAAACTCGAAAAT-CGAAAAGAGTTGTTAGGTGGCGCACAAAACCCATTTTTTGCGAAAATGGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256788" ref_strand="+" ref_description="SGN-E256788 [cLEG-40-A22]">
      <seq>ttttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctcgaggcatgcctaacaccttcccctcgaggtaatttgaacccttaccctaatctctggctcgttgaccttagttagacttaattaggttagataggtgccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="129955" stop="120813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121454" g_stop="121113" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E256788" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>342</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121454" e_stop="121113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATATATTGAATGAGATACGGCCGGGACCCATGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGTCTCGTTGACCTTAGTTAGACTTATTTAGGTTATATAGGTGCCCT</genome_strand>
        <mrna_strand>TTTTGTCTATAACATAGCCTCGTATGTT-AAAT-AAAT----A-A-AAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTCGAGGCATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGGCTCGTTGACCTTAGTTAGACTTAATTAGGTTAGATAGGTGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369933" ref_strand="+" ref_description="SGN-E369933 [TUS-26-D3]">
      <seq>gacattgtttattttgaaagtaaattataagtactatctcctaacctatcgttagtgggaaagtcaaaggaagtatgaggtctagttccaattttttaaacccgacgcatcctcggaagtatcacctacccatgaatttcaaaaggaattatgtgcatttatatgtaaatgtttatgtgcctacatgtaaactagatcttttaaatcatttttttcaaaaatataaactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgatcaacaatatcgtggcatcatccctacaaagaaacaaacatttttttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttggggacctcgaggcatgcctaacaccttcccctcgaggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="130364" stop="120882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121865" g_stop="121182" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="676" r_length="676" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E369933" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121865" e_stop="121182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGACATCATCCCTATAAAGAAACAAA-A-TTTTTTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATATATTGAATGAGATACGGCCGGGACCCATGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAA</genome_strand>
        <mrna_strand>GACATTGTTTATTTTGAAAGTAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAAGTATGAGGTCTAGTTCCAATTTTTTAAACCCGACGCATCCTCGGAAGTATCACCTACCCATGAATTTCAAAAGGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACATGTAAACTAGATCTTTTAAATCA-TTTTTTTCAAAAATATAAACTA-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTTTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCA-AAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTT-AAAT-AAAT----A-A-AAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGGGGACCTCGAGGCATGCCTAACACCTTCCCCTCGAGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208670" ref_strand="+" ref_description="SGN-E208670 [cLEC-39-F5]">
      <seq>agaaacaaacatttttttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgattgctacttgtaacccccacatagattgcatgagatacggccgggacccacacttgtggacctngaggcatgcctaacaccttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="130054" stop="120891"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121555" g_stop="121191" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E208670" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.020" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121555" e_stop="121191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAA-AT-TTTTTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATATATTGAATGAGATACGGCCGGGACCCATGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCC</genome_strand>
        <mrna_strand>AGAAACAAACATTTTTTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCA-AAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTT-AAAT-AAATAAAAA-AT---A--AACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATAGATTGCATGAGATACGGCCGGGACCCACACTTGTGGACCTNGAGGCATGCCTAACACCTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370015" ref_strand="+" ref_description="SGN-E370015 [TUS-26-D4]">
      <seq>gacattgtttattttgaaagtaaattataagtactatctcctaacctatcgttagtgggaaagtcaaaggaagtatgaggtctagttccaattttttaaacccgacgcatcctcggaagtatcacctacccatgaatttcaaaaggaattatgtgcatttatatgtaaatgtttatgtgcctacatgtaaactagatcttttaaatcatttttttcaaaaatataaactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgatcaacaatatcgtggcatcatccctacaaagaaacaaacatttttttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaataaacttgattgtttattattgctgtcatctagcctcgcatgtttaaattaataaaatagccttaattgttttatacttgttatcacttagcaaagcacattaatgaataataatgaagtgaccttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="130364" stop="120976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121865" g_stop="121276" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E370015" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121865" e_stop="121276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGACATCATCCCTATAAAGAAACAAA-A-TTTTTTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGC-AAGCATATTAATGAATAATAATGAAGTGACCTTGATT</genome_strand>
        <mrna_strand>GACATTGTTTATTTTGAAAGTAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAAGTATGAGGTCTAGTTCCAATTTTTTAAACCCGACGCATCCTCGGAAGTATCACCTACCCATGAATTTCAAAAGGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACATGTAAACTAGATCTTTTAAATCA-TTTTTTTCAAAAATATAAACTA-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTTTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCA-AAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTT-AAAT-AAAT----A-A-AAAATAAACTTGATTGTTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGTTTTATACTTGTTATCACTTAGCAAAGCACATTAATGAATAATAATGAAGTGACCTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258838" ref_strand="+" ref_description="SGN-E258838 [cLEG-41-C11]">
      <seq>gacattgtttattttgaaagtaaattataagtactatctcctaacctatcgttagtgggaaagtcaaaggaagtatgaggtctagttccaattttttaaacccgacgcatcctcggaagtatcacctacccatgaatttcaaaaggaattatgtgcatttatatgtaaatgtttatgtgcctacatgtaaactagatcttttaaatcatttttttcaaaaatataaactatttttagaccgacctcaaatcaaaattgtttctatggtggaggagcgcgatcaacaatatcgtggcatcatccctacaaagaaacaaacattttgttaaaaataaaaaaatttcatattcaaaacttgctccattttcaaaactttactttctcacatattaattgtttaatattacaaattttgtctataacatagcctcgtatgttaaataaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="122165" stop="121112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121865" g_stop="121412" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E258838" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121865" e_stop="121412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGACATCATCCCTATAAAGAAACAAA-ATTTT-TTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAA</genome_strand>
        <mrna_strand>GACATTGTTTATTTTGAAAGTAAATTATAAGTACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAAGTATGAGGTCTAGTTCCAATTTTTTAAACCCGACGCATCCTCGGAAGTATCACCTACCCATGAATTTCAAAAGGAATTATGTGCATTTATATGTAAATGTTTATGTGCCTACATGTAAACTAGATCTTTTAAATCA-TTTTTTTCAAAAATATAAACTA-TTTTTAGACCGACCTCAAATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGGCATCATCCCTACAAAGAAACAAACATTTTGTTAAAAATAAAAAAATTTCATATTCAAAACTTGCTCCATTTTCA-AAACTTTACTTTCTCACATATTAATTGTTTAATA-TTACAAATTTTGTCTATAACATAGCCTCGTATGTT-AAATAAATAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239555" ref_strand="+" ref_description="SGN-E239555 [cLED-23-M11]">
      <seq>gtaatcccatttgttttccgcattcatgatgcaatattttttttcttaatactaatttagaatcatttcatgcatttaacttggctttaaaaatatttcatatcaaaaccttgtaacataattttcttaaaaagtcattattcaattttccttttaaactttggattgattttgaaattgtttattttgaaagtaaattataagcactatctcctaacctatcgttagtgagaaagtcaaaggaactacgaggtctagttccaactttttaaacccgacgcgtccccggaagtaccacctacctatgaatttcaaaagaaattatgtgcatctatatgtaaatgtttatgtgcctacgtgtaaactaaatcattttttttaaaaaaaacataaactattttttagaccgacctcaaaatcaaaattgtttctatggtggaagagcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="122337" stop="121286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122037" g_stop="121586" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E239555" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122037" e_stop="121586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCCTATTTGTTTTCCGCATTCATGATGCAATA-TTTTTTTAATAATACTAATTTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTC-AGATCAAAATTGTTTCTATGGTGGAGGAGCGCG</genome_strand>
        <mrna_strand>GTAATCCCATTTGTTTTCCGCATTCATGATGCAATATTTTTTTTCTTAATACTAATTTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTCTTAAAAAGTCATTATTCAATTTTCCTTTTAAACTTTGGATTGATTTTGAAATTGTTTATTTTGAAAGTAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGAGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAACTTTTTAAACCCGACGCGTCCCCGGAAGTACCACCTACCTATGAATTTCAAAAGAAATTATGTGCATCTATATGTAAATGTTTATGTGCCTACGTGTAAACTAAATC------AT-TTTTTTTAAAAAAAACATAAACTATTTTTTAGACCGACCTCAAAATCAAAATTGTTTCTATGGTGGAAGAGCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240953" ref_strand="+" ref_description="SGN-E240953 [cLED-24-M14]">
      <seq>gtaatcccatttgttttccgcattcatgatgcaatattttttttcttaatactaatttagaatcatttcatgcatttaacttggctttaaaaatatttcatatcaaaaccttgtaacataattttcttaaaaagtcattattcaattttccttttaaactttggattgattttgaaattgtttattttgaaagtaaattataagcactatctcctaacctatcgttagtgagaaagtcaaaggaactacgaggtctagttccaactttttaaacccgacgcgtccccggaagtaccacctacctatgaatttcaaaagaaattatgtgcatctatatgtaaatgtttatgtgcctacgtgtaaactaaatcattttttttaaaaaaaacataaactattttttagaccgacctcaaaatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0306E10-JCcni/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0306E10.1" temp_strand="-" temp_description="C10HBa0306E10.1  AC238925.7 htgs_phase:2 submitted_to_sgn_as:C10HBa0306E10 upload_account_name:manual">
        <position start="122337" stop="121310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122037" g_stop="121610" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0306E10.1" gen_strand="-" ref_id="SGN-E240953" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0306E10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122037" e_stop="121610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAATCCTATTTGTTTTCCGCATTCATGATGCAATA-TTTTTTTAATAATACTAATTTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAA-TTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTC-AGATCAAAA</genome_strand>
        <mrna_strand>GTAATCCCATTTGTTTTCCGCATTCATGATGCAATATTTTTTTTCTTAATACTAATTTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTCTTAAAAAGTCATTATTCAATTTTCCTTTTAAACTTTGGATTGATTTTGAAATTGTTTATTTTGAAAGTAAATTATAAGCACTATCTCCTAACCTATCGTTAGTGAGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAACTTTTTAAACCCGACGCGTCCCCGGAAGTACCACCTACCTATGAATTTCAAAAGAAATTATGTGCATCTATATGTAAATGTTTATGTGCCTACGTGTAAACTAAATCATTT-------TTTTTAAAAAAAACATAAACTATTTTTTAGACCGACCTCAAAATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="24148" PGL_stop="22760"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24148" e_stop="24128"/>
            <exon e_start="23420" e_stop="22760"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.571">
            <gDNA_exon_boundary e_start="24148" e_stop="24128" e_length="21"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="24127" i_stop="23421" i_length="707"/>
          </intron>
          <exon e_serial="2" e_score="0.922">
            <gDNA_exon_boundary e_start="23420" e_stop="22760" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24148" stop="24128"/>
              <exon start="23420" stop="22809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23248" stop="22760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGCAGAGGCTTACCAAAAA : GGAAAATGTTATTTGTAGTTTTGATGATTTGACAAACTTAGGGACCTCATGAAGGTACCGGGTTTTCTACTTGAGTATTGCAGGTGTCTTGTTTGAAGTATTGCAGATGAAACAAACCCTGGGACCTAGTAGAGGTACCAGGATCTCATGATGATGAGCCAGTCGACTGCCAGCTGGAGACGGTACAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAAGTGTGACCTTTCCAGCCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACATTTGTGACTTAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGTAAAAGCTACACAAAGCAAAGGCAGAATTATTCCAAGAACAACAGCAACATCTGGAGCTTATCGTCTAGTTGTTTAGGAATTTATTCTCTTGTTCTTAAATTGTAAACCACTCCTAACTCTATAAAGGAATTGGTGTGTTGTGTTAGAAGTTTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGACTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTGCTTTTGCTTGTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> K  A  E  A  Y  Q  K  :  G  K  C  Y  L  *  F  *  *  F  D  K  L  R  D  L  M  K  V  P  G  F  L  L  E  Y  C  R  C  L  V  *  S  I  A  D  E  T  N  P  G  T  *  *  R  Y  Q  D  L  M  M  M  S  Q  S  T  A  S  W  R  R  Y  R  K  *  V  H  T  S  R  W  R  Q  K  S  V  T  F  P  A  N  G  K  E  V  *  E  S  D  L  P  I  *  K  A  L  S  *  T  F  V  T  *  F  L  Q  L  D  K  N  F  S  R  T  L  V  K  A  T  Q  S  K  G  R  I  I  P  R  T  T  A  T  S  G  A  Y  R  L  V  V  *  E  F  I  L  L  F  L  N  C  K  P  L  L  T  L  *  R  N  W  C  V  V  L  E  V  *  V  V  Q  V  G  *  L  S  G  *  I  V  F  L  L  R  L  V  E  Q  *  R  T  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  C  F  C  L  *  R  L  V  K  T  I  E  </first_frame>
            <second_frame>  R  Q  R  L  T  K  K :   E  N  V  I  C  S  F  D  D  L  T  N  L  G  T  S  *  R  Y  R  V  F  Y  L  S  I  A  G  V  L  F  E  V  L  Q  M  K  Q  T  L  G  P  S  R  G  T  R  I  S  *  *  *  A  S  R  L  P  A  G  D  G  T  E  S  R  C  T  L  P  D  G  V  R  K  V  *  P  F  Q  P  M  A  K  K  F  R  K  V  T  C  P  Y  K  R  H  F  P  K  H  L  *  L  S  F  C  N  L  I  K  T  F  Q  E  L  L  *  K  L  H  K  A  K  A  E  L  F  Q  E  Q  Q  Q  H  L  E  L  I  V  *  L  F  R  N  L  F  S  C  S  *  I  V  N  H  S  *  L  Y  K  G  I  G  V  L  C  *  K  F  R  L  S  R  W  D  S  L  V  G  R  L  F  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  C  E  D  *  *  K  R  L  K </second_frame>
            <third_frame>   G  R  G  L  P  K   : R  K  M  L  F  V  V  L  M  I  *  Q  T  *  G  P  H  E  G  T  G  F  S  T  *  V  L  Q  V  S  C  L  K  Y  C  R  *  N  K  P  W  D  L  V  E  V  P  G  S  H  D  D  E  P  V  D  C  Q  L  E  T  V  Q  K  V  G  A  H  F  P  M  A  S  E  K  C  D  L  S  S  Q  W  Q  R  S  L  G  K  *  L  A  H  I  K  G  T  F  L  N  I  C  D  L  V  F  A  T  *  *  K  L  F  K  N  S  C  K  S  Y  T  K  Q  R  Q  N  Y  S  K  N  N  S  N  I  W  S  L  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  N  S  I  K  E  L  V  C  C  V  R  S  L  G  C  P  G  G  I  A  *  W  V  D  C  F  S  T  *  A  C  *  A  I  E  D  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  L  L  L  L  V  K  I  S  E  N  D  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0306E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="48564" PGL_stop="48403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48564" e_stop="48403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="48564" e_stop="48403" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48564" stop="48403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATTTACGAAAAGACTTAAAAAGAAATGCAATTATTAGTACAATAATTAATATTAAATACCTACATTATGTACTCTTTATCTATTTCTAATATTTGTATTGTACAATTTAATTATTTGAATAAATATACGGCTATTCGCCTTGATTTTCTTTTAAAATA</gDNA_template>
            <first_frame> Q  N  L  R  K  D  L  K  R  N  A  I  I  S  T  I  I  N  I  K  Y  L  H  Y  V  L  F  I  Y  F  *  Y  L  Y  C  T  I  *  L  F  E  *  I  Y  G  Y  S  P  *  F  S  F  K  I </first_frame>
            <second_frame>  K  I  Y  E  K  T  *  K  E  M  Q  L  L  V  Q  *  L  I  L  N  T  Y  I  M  Y  S  L  S  I  S  N  I  C  I  V  Q  F  N  Y  L  N  K  Y  T  A  I  R  L  D  F  L  L  K   </second_frame>
            <third_frame>   K  F  T  K  R  L  K  K  K  C  N  Y  *  Y  N  N  *  Y  *  I  P  T  L  C  T  L  Y  L  F  L  I  F  V  L  Y  N  L  I  I  *  I  N  I  R  L  F  A  L  I  F  F  *  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0306E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="70803" PGL_stop="68721"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70803" e_stop="70714"/>
            <exon e_start="70628" e_stop="70524"/>
            <exon e_start="70442" e_stop="70316"/>
            <exon e_start="70200" e_stop="70129"/>
            <exon e_start="69332" e_stop="69287"/>
            <exon e_start="69192" e_stop="68874"/>
            <exon e_start="68791" e_stop="68721"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70803" e_stop="70714" e_length="90"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="70713" i_stop="70629" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70628" e_stop="70524" e_length="105"/>
          </exon>
          <intron i_serial="2" don_prob="0.958" acc_prob="0.997">
            <gDNA_intron_boundary i_start="70523" i_stop="70443" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70442" e_stop="70316" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.975" acc_prob="0.983">
            <gDNA_intron_boundary i_start="70315" i_stop="70201" i_length="115"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70200" e_stop="70129" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.995">
            <gDNA_intron_boundary i_start="70128" i_stop="69333" i_length="796"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69332" e_stop="69287" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.806" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69286" i_stop="69193" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69192" e_stop="68874" e_length="319"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.991">
            <gDNA_intron_boundary i_start="68873" i_stop="68792" i_length="82"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="68791" e_stop="68721" e_length="71"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70803" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567215" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70791" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70784" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="69131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70783" stop="70714"/>
              <exon start="70628" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68874"/>
              <exon start="68791" stop="68721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70625" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70595" stop="70524"/>
              <exon start="70442" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70421" stop="70316"/>
              <exon start="70200" stop="70129"/>
              <exon start="69332" stop="69287"/>
              <exon start="69192" stop="68874"/>
              <exon start="68791" stop="68748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATTCCTCGTCATCGTTGTCTTCTTTCTTCTTCTACTTTCCATGTCGATAGCATATGGCATCCAAGGCCAACTCCTTGAAGTAACTG : TTGTTGCTTGTAATAAACTGAAGGATACTGAATGGATTTCAAGGCAAGATCCGTATGTTTGCCTTGAATACGGAAGTTCTAAATTCCGTACTCGTACATGTACAG : ATGGCGGTAAAAACCCTACGTTTCAAGAGAAATTTGTGTTTAAGCTAATTGAAGGGTTGCGAGAGATCAATGTTGTTGTGTGGAATAGCAATACTGTTAATTCAGATGATTTTATAGGGAGTGGAAA : GGTTCAACTACAGAAGGTTCTCTCACAGGGATTTGATGATACTGCTTGGCCACTTCAGAGGAAGAACGGCAG : GCATGCAGGAGAAGTTCGACTAATAATGCACTATGCAAATACCAAT : AAGCCAGCAACAAGCCATGCTCAATCAGGCCCTCCATTTGTTACACCAACTCCTGGATCATATCCATATTCAGTAGCTCCACCACATGTAGCTTCTCACCCAACACCTTCTGGCTATCCAGCACCATCTCCTTATTCCACAGCCTCGCCTCCTTCAGCATTTTATCCAGCTTCTCCTTATTCCACAGTCCCACCACCTCCAGCAGCATATCATTCAACATCTCTTTATCCCCCTCAATCGGCTGCTTATCCTTCACCTTACTCATCATCTGCGTATCTGCCTCAGCCTTATCCACCACAGGGTTACTCTTATCCCCCAG : GTCAATACCCTGGAGTCTATCCTCCACGATCGTATTGATGCTATGTTCTTAAATGCCTGGACAAGGATTGT</gDNA_template>
            <first_frame> P  N  S  S  S  S  L  S  S  F  F  F  Y  F  P  C  R  *  H  M  A  S  K  A  N  S  L  K  *  L  :  L  L  L  V  I  N  *  R  I  L  N  G  F  Q  G  K  I  R  M  F  A  L  N  T  E  V  L  N  S  V  L  V  H  V  Q  :  M  A  V  K  T  L  R  F  K  R  N  L  C  L  S  *  L  K  G  C  E  R  S  M  L  L  C  G  I  A  I  L  L  I  Q  M  I  L  *  G  V  E   : R  F  N  Y  R  R  F  S  H  R  D  L  M  I  L  L  G  H  F  R  G  R  T  A   : G  M  Q  E  K  F  D  *  *  C  T  M  Q  I  P  I :   S  Q  Q  Q  A  M  L  N  Q  A  L  H  L  L  H  Q  L  L  D  H  I  H  I  Q  *  L  H  H  M  *  L  L  T  Q  H  L  L  A  I  Q  H  H  L  L  I  P  Q  P  R  L  L  Q  H  F  I  Q  L  L  L  I  P  Q  S  H  H  L  Q  Q  H  I  I  Q  H  L  F  I  P  L  N  R  L  L  I  L  H  L  T  H  H  L  R  I  C  L  S  L  I  H  H  R  V  T  L  I  P  Q  :  V  N  T  L  E  S  I  L  H  D  R  I  D  A  M  F  L  N  A  W  T  R  I   </first_frame>
            <second_frame>  Q  I  P  R  H  R  C  L  L  S  S  S  T  F  H  V  D  S  I  W  H  P  R  P  T  P  *  S  N  C :   C  C  L  *  *  T  E  G  Y  *  M  D  F  K  A  R  S  V  C  L  P  *  I  R  K  F  *  I  P  Y  S  Y  M  Y  R :   W  R  *  K  P  Y  V  S  R  E  I  C  V  *  A  N  *  R  V  A  R  D  Q  C  C  C  V  E  *  Q  Y  C  *  F  R  *  F  Y  R  E  W  K  :  G  S  T  T  E  G  S  L  T  G  I  *  *  Y  C  L  A  T  S  E  E  E  R  Q  :  A  C  R  R  S  S  T  N  N  A  L  C  K  Y  Q   : *  A  S  N  K  P  C  S  I  R  P  S  I  C  Y  T  N  S  W  I  I  S  I  F  S  S  S  T  T  C  S  F  S  P  N  T  F  W  L  S  S  T  I  S  L  F  H  S  L  A  S  F  S  I  L  S  S  F  S  L  F  H  S  P  T  T  S  S  S  I  S  F  N  I  S  L  S  P  S  I  G  C  L  S  F  T  L  L  I  I  C  V  S  A  S  A  L  S  T  T  G  L  L  L  S  P  R :   S  I  P  W  S  L  S  S  T  I  V  L  M  L  C  S  *  M  P  G  Q  G  L  </second_frame>
            <third_frame>   K  F  L  V  I  V  V  F  F  L  L  L  L  S  M  S  I  A  Y  G  I  Q  G  Q  L  L  E  V  T   : V  V  A  C  N  K  L  K  D  T  E  W  I  S  R  Q  D  P  Y  V  C  L  E  Y  G  S  S  K  F  R  T  R  T  C  T   : D  G  G  K  N  P  T  F  Q  E  K  F  V  F  K  L  I  E  G  L  R  E  I  N  V  V  V  W  N  S  N  T  V  N  S  D  D  F  I  G  S  G  K :   V  Q  L  Q  K  V  L  S  Q  G  F  D  D  T  A  W  P  L  Q  R  K  N  G  R :   H  A  G  E  V  R  L  I  M  H  Y  A  N  T  N  :  K  P  A  T  S  H  A  Q  S  G  P  P  F  V  T  P  T  P  G  S  Y  P  Y  S  V  A  P  P  H  V  A  S  H  P  T  P  S  G  Y  P  A  P  S  P  Y  S  T  A  S  P  P  S  A  F  Y  P  A  S  P  Y  S  T  V  P  P  P  P  A  A  Y  H  S  T  S  L  Y  P  P  Q  S  A  A  Y  P  S  P  Y  S  S  S  A  Y  L  P  Q  P  Y  P  P  Q  G  Y  S  Y  P  P   : G  Q  Y  P  G  V  Y  P  P  R  S  Y  *  C  Y  V  L  K  C  L  D  K  D  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70801" stop="70714"/>
                    <exon start="70628" stop="70524"/>
                    <exon start="70442" stop="70316"/>
                    <exon start="70200" stop="70129"/>
                    <exon start="69332" stop="69287"/>
                    <exon start="69192" stop="68874"/>
                    <exon start="68791" stop="68754"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLVIVVFFLLLLSMSIAYGIQGQLLEVTVVACNKLKDTEWISRQDPYVCLEYGSSKFRTRTCTDGGKNPTFQEKFVFKLIEGLREINVVVWNSNTVNSDDFIGSGKVQLQKVLSQGFDDTAWPLQRKNGRHAGEVRLIMHYANTNKPATSHAQSGPPFVTPTPGSYPYSVAPPHVASHPTPSGYPAPSPYSTASPPSAFYPASPYSTVPPPPAAYHSTSLYPPQSAAYPSPYSSSAYLPQPYPPQGYSYPPGQYPGVYPPRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="96308" PGL_stop="93787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96308" e_stop="96237"/>
            <exon e_start="95644" e_stop="95552"/>
            <exon e_start="95456" e_stop="95359"/>
            <exon e_start="95276" e_stop="94898"/>
            <exon e_start="93960" e_stop="93787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.829" e_score="0.946"/>
          <exon-intron don_prob="0.680" acc_prob="0.000" e_score="0.908"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.955"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="96308" e_stop="96237" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="96236" i_stop="95645" i_length="592"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="95644" e_stop="95552" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.829">
            <gDNA_intron_boundary i_start="95551" i_stop="95457" i_length="95"/>
          </intron>
          <exon e_serial="3" e_score="0.908">
            <gDNA_exon_boundary e_start="95456" e_stop="95359" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.680" acc_prob="0.000">
            <gDNA_intron_boundary i_start="95358" i_stop="95277" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="95276" e_stop="94898" e_length="379"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94897" i_stop="93961" i_length="937"/>
          </intron>
          <exon e_serial="5" e_score="0.954">
            <gDNA_exon_boundary e_start="93960" e_stop="93787" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96308" stop="96237"/>
              <exon start="95644" stop="95552"/>
              <exon start="95456" stop="95359"/>
              <exon start="95276" stop="94898"/>
              <exon start="93960" stop="93787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAGCCTGGTCATATTCCAGAATGTCAATTTAGAGAGCTCCTCAAATATTGGAATTCTGAAAAATTCAAG : AAAATGTCTGAAACAAATGCAATGAATCGAAAAAAACTGATGAATCCACACACTGCTGGCAAAAAGAGTTTCGCTTTAGTTCGTAATAAGCTG : GAGAAAGATAATGAGATAGTATAATCTAAGGATCTTTGTGGTTACAAGAACAAGAAAACCTGGTCGTTTGTACAACGCCTCAAATGAAGATACTATTA : TAGCCTGAAATGGAGGAAATTCAAAAACAAATAAGCATAAATGATGAGTATGTTGATGCATTTTCAAGCGTCATGGGTCATGAACATCCAGGACGTCTAACACTATATGGCGCAGGAGTTACAAAGACTACTTTGAAAAAAAAAGTTGGAAATTTGGAATCAATTTTAAGTGCAACAACTGATGGAATGCAGCAAATGCAAGAGAAGATGCAGAAAATGGAGAAACAAATGGAGGAACAAAAGAAAATTGTGCGACAAGAAGTTATTGTAGATGTTATTGCACAACTTAAGCATGCAGGATTAATTTATCCTAACATATTGGAAGCATTGTCGACTCCTTCACCAAGAGAATCTACTTTTGTTCAAGGGGCTAAACAAG : GTGATGAAATCGAAGAAGGCGATGAAAGCAGTAGTGAAGACTTGACATAGGAGCTGAAGTATATATTGATGTAAACTTTATTGATGTTCTAGAAATCATATATTTTTGAAGATTGAAAATTCTATGGCATGTGTTTCACCTTTTTTTAATGCTATAAAAAGATTTGTATATTTT</gDNA_template>
            <first_frame> K  K  P  G  H  I  P  E  C  Q  F  R  E  L  L  K  Y  W  N  S  E  K  F  K  :  K  M  S  E  T  N  A  M  N  R  K  K  L  M  N  P  H  T  A  G  K  K  S  F  A  L  V  R  N  K  L  :  E  K  D  N  E  I  V  *  S  K  D  L  C  G  Y  K  N  K  K  T  W  S  F  V  Q  R  L  K  *  R  Y  Y  Y :   S  L  K  W  R  K  F  K  N  K  *  A  *  M  M  S  M  L  M  H  F  Q  A  S  W  V  M  N  I  Q  D  V  *  H  Y  M  A  Q  E  L  Q  R  L  L  *  K  K  K  L  E  I  W  N  Q  F  *  V  Q  Q  L  M  E  C  S  K  C  K  R  R  C  R  K  W  R  N  K  W  R  N  K  R  K  L  C  D  K  K  L  L  *  M  L  L  H  N  L  S  M  Q  D  *  F  I  L  T  Y  W  K  H  C  R  L  L  H  Q  E  N  L  L  L  F  K  G  L  N  K  :  V  M  K  S  K  K  A  M  K  A  V  V  K  T  *  H  R  S  *  S  I  Y  *  C  K  L  Y  *  C  S  R  N  H  I  F  L  K  I  E  N  S  M  A  C  V  S  P  F  F  N  A  I  K  R  F  V  Y  F </first_frame>
            <second_frame>  K  S  L  V  I  F  Q  N  V  N  L  E  S  S  S  N  I  G  I  L  K  N  S  R :   K  C  L  K  Q  M  Q  *  I  E  K  N  *  *  I  H  T  L  L  A  K  R  V  S  L  *  F  V  I  S  W :   R  K  I  M  R  *  Y  N  L  R  I  F  V  V  T  R  T  R  K  P  G  R  L  Y  N  A  S  N  E  D  T  I   : I  A  *  N  G  G  N  S  K  T  N  K  H  K  *  *  V  C  *  C  I  F  K  R  H  G  S  *  T  S  R  T  S  N  T  I  W  R  R  S  Y  K  D  Y  F  E  K  K  S  W  K  F  G  I  N  F  K  C  N  N  *  W  N  A  A  N  A  R  E  D  A  E  N  G  E  T  N  G  G  T  K  E  N  C  A  T  R  S  Y  C  R  C  Y  C  T  T  *  A  C  R  I  N  L  S  *  H  I  G  S  I  V  D  S  F  T  K  R  I  Y  F  C  S  R  G  *  T  R :   *  *  N  R  R  R  R  *  K  Q  *  *  R  L  D  I  G  A  E  V  Y  I  D  V  N  F  I  D  V  L  E  I  I  Y  F  *  R  L  K  I  L  W  H  V  F  H  L  F  L  M  L  *  K  D  L  Y  I   </second_frame>
            <third_frame>   K  A  W  S  Y  S  R  M  S  I  *  R  A  P  Q  I  L  E  F  *  K  I  Q   : E  N  V  *  N  K  C  N  E  S  K  K  T  D  E  S  T  H  C  W  Q  K  E  F  R  F  S  S  *  *  A   : G  E  R  *  *  D  S  I  I  *  G  S  L  W  L  Q  E  Q  E  N  L  V  V  C  T  T  P  Q  M  K  I  L  L  :  *  P  E  M  E  E  I  Q  K  Q  I  S  I  N  D  E  Y  V  D  A  F  S  S  V  M  G  H  E  H  P  G  R  L  T  L  Y  G  A  G  V  T  K  T  T  L  K  K  K  V  G  N  L  E  S  I  L  S  A  T  T  D  G  M  Q  Q  M  Q  E  K  M  Q  K  M  E  K  Q  M  E  E  Q  K  K  I  V  R  Q  E  V  I  V  D  V  I  A  Q  L  K  H  A  G  L  I  Y  P  N  I  L  E  A  L  S  T  P  S  P  R  E  S  T  F  V  Q  G  A  K  Q   : G  D  E  I  E  E  G  D  E  S  S  S  E  D  L  T  *  E  L  K  Y  I  L  M  *  T  L  L  M  F  *  K  S  Y  I  F  E  D  *  K  F  Y  G  M  C  F  T  F  F  *  C  Y  K  K  I  C  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0306E10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95273" stop="94898"/>
                    <exon start="93960" stop="93911"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>423</number_coding_nucleotides>
                  <number_encoded_amino_acids>141</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PEMEEIQKQISINDEYVDAFSSVMGHEHPGRLTLYGAGVTKTTLKKKVGNLESILSATTDGMQQMQEKMQKMEKQMEEQKKIVRQEVIVDVIAQLKHAGLIYPNILEALSTPSPRESTFVQGAKQGDEIEEGDESSSEDLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="122037" PGL_stop="121017"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="122037" e_stop="121017"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="122037" e_stop="121017" e_length="1021"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="121586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122037" stop="121610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121900" stop="121017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121865" stop="121182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121865" stop="121276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121865" stop="121412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121555" stop="121191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121454" stop="121113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTAATCCTATTTGTTTTCCGCATTCATGATGCAATATTTTTTTAATAATACTAATTTAGAATCATTTCATGCATTTAACTTGGCTTTAAAAATATTTCATATCAAAACCTTGTAACATAATTTTTTTAAAAAGTCATTATTCAATCTTCCTTTAAAACTTTGGATTGATTTTGACATTGTTTATTTTAAAAATAAATTATAAACACTATCTCCTAACCTATCGTTAGTGGGAAAGTCAAAGGAACTACGAGGTCTAGTTCCAATTTTTAAACCCGACGCATCCTCGGAAGTACCACCTACCCATGAATTTCAAAGAGAATTATGTGCATTTATGTGTAAATATTTATGTGCCTACATGTAAACTAAATCTTTTAAATCATTTTTTTTCAAAAACATAAACTATTTTTTAGACCGACCTCAGATCAAAATTGTTTCTATGGTGGAGGAGCGCGATCAACAATATCGTGACATCATCCCTATAAAGAAACAAAATTTTTTAAAAAAATAAAAATTTCATATTCAAAACTTGCTCCATTTTTACAAACTTTACTTTCGCACATATTAATTGCTTAATATTTGCCAATTTTTTCTATAACATAGCCTCGTATGTTAAAATAAAATAAAAATATAAAATAAACTTGATTGCTTATTATTGCTGTCATCTAGCCTCGCATGTTTAAATTAATAAAATAGCCTTAATTGCTTTATACTTGTTATCACTTAGCAAGCATATTAATGAATAATAATGAAGTGACCTTGATTGCTACTTGTAACCCCCACATATATTGAATGAGATACGGCCGGGACCCATGCTTGTGGACCTCGAGGGATGCCTAACACCTTCCCCTCGAGGTAATTTGAACCCTTACCCTAATCTCTGTCTCGTTGACCTTAGTTAGACTTATTTAGGTTATATAGGTGCCCTAACGCGCCTTAATTCATTAGGTTGCAACTCCAAACCCGAAAATCCCAAAAGAGTTGTTAGGTCGCGCACAAAACCCGTTTTCTGCGAAAATGGAGC</gDNA_template>
            <first_frame> V  I  L  F  V  F  R  I  H  D  A  I  F  F  *  *  Y  *  F  R  I  I  S  C  I  *  L  G  F  K  N  I  S  Y  Q  N  L  V  T  *  F  F  *  K  V  I  I  Q  S  S  F  K  T  L  D  *  F  *  H  C  L  F  *  K  *  I  I  N  T  I  S  *  P  I  V  S  G  K  V  K  G  T  T  R  S  S  S  N  F  *  T  R  R  I  L  G  S  T  T  Y  P  *  I  S  K  R  I  M  C  I  Y  V  *  I  F  M  C  L  H  V  N  *  I  F  *  I  I  F  F  Q  K  H  K  L  F  F  R  P  T  S  D  Q  N  C  F  Y  G  G  G  A  R  S  T  I  S  *  H  H  P  Y  K  E  T  K  F  F  K  K  I  K  I  S  Y  S  K  L  A  P  F  L  Q  T  L  L  S  H  I  L  I  A  *  Y  L  P  I  F  S  I  T  *  P  R  M  L  K  *  N  K  N  I  K  *  T  *  L  L  I  I  A  V  I  *  P  R  M  F  K  L  I  K  *  P  *  L  L  Y  T  C  Y  H  L  A  S  I  L  M  N  N  N  E  V  T  L  I  A  T  C  N  P  H  I  Y  *  M  R  Y  G  R  D  P  C  L  W  T  S  R  D  A  *  H  L  P  L  E  V  I  *  T  L  T  L  I  S  V  S  L  T  L  V  R  L  I  *  V  I  *  V  P  *  R  A  L  I  H  *  V  A  T  P  N  P  K  I  P  K  E  L  L  G  R  A  Q  N  P  F  S  A  K  M  E  </first_frame>
            <second_frame>  *  S  Y  L  F  S  A  F  M  M  Q  Y  F  F  N  N  T  N  L  E  S  F  H  A  F  N  L  A  L  K  I  F  H  I  K  T  L  *  H  N  F  F  K  K  S  L  F  N  L  P  L  K  L  W  I  D  F  D  I  V  Y  F  K  N  K  L  *  T  L  S  P  N  L  S  L  V  G  K  S  K  E  L  R  G  L  V  P  I  F  K  P  D  A  S  S  E  V  P  P  T  H  E  F  Q  R  E  L  C  A  F  M  C  K  Y  L  C  A  Y  M  *  T  K  S  F  K  S  F  F  F  K  N  I  N  Y  F  L  D  R  P  Q  I  K  I  V  S  M  V  E  E  R  D  Q  Q  Y  R  D  I  I  P  I  K  K  Q  N  F  L  K  K  *  K  F  H  I  Q  N  L  L  H  F  Y  K  L  Y  F  R  T  Y  *  L  L  N  I  C  Q  F  F  L  *  H  S  L  V  C  *  N  K  I  K  I  *  N  K  L  D  C  L  L  L  L  S  S  S  L  A  C  L  N  *  *  N  S  L  N  C  F  I  L  V  I  T  *  Q  A  Y  *  *  I  I  M  K  *  P  *  L  L  L  V  T  P  T  Y  I  E  *  D  T  A  G  T  H  A  C  G  P  R  G  M  P  N  T  F  P  S  R  *  F  E  P  L  P  *  S  L  S  R  *  P  *  L  D  L  F  R  L  Y  R  C  P  N  A  P  *  F  I  R  L  Q  L  Q  T  R  K  S  Q  K  S  C  *  V  A  H  K  T  R  F  L  R  K  W  S </second_frame>
            <third_frame>   N  P  I  C  F  P  H  S  *  C  N  I  F  L  I  I  L  I  *  N  H  F  M  H  L  T  W  L  *  K  Y  F  I  S  K  P  C  N  I  I  F  L  K  S  H  Y  S  I  F  L  *  N  F  G  L  I  L  T  L  F  I  L  K  I  N  Y  K  H  Y  L  L  T  Y  R  *  W  E  S  Q  R  N  Y  E  V  *  F  Q  F  L  N  P  T  H  P  R  K  Y  H  L  P  M  N  F  K  E  N  Y  V  H  L  C  V  N  I  Y  V  P  T  C  K  L  N  L  L  N  H  F  F  S  K  T  *  T  I  F  *  T  D  L  R  S  K  L  F  L  W  W  R  S  A  I  N  N  I  V  T  S  S  L  *  R  N  K  I  F  *  K  N  K  N  F  I  F  K  T  C  S  I  F  T  N  F  T  F  A  H  I  N  C  L  I  F  A  N  F  F  Y  N  I  A  S  Y  V  K  I  K  *  K  Y  K  I  N  L  I  A  Y  Y  C  C  H  L  A  S  H  V  *  I  N  K  I  A  L  I  A  L  Y  L  L  S  L  S  K  H  I  N  E  *  *  *  S  D  L  D  C  Y  L  *  P  P  H  I  L  N  E  I  R  P  G  P  M  L  V  D  L  E  G  C  L  T  P  S  P  R  G  N  L  N  P  Y  P  N  L  C  L  V  D  L  S  *  T  Y  L  G  Y  I  G  A  L  T  R  L  N  S  L  G  C  N  S  K  P  E  N  P  K  R  V  V  R  S  R  T  K  P  V  F  C  E  N  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0306E10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 242 chains have been computed
$ 
$ memory statistics:
$ 157144 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 8270 bytes was the average size of a spliced alignment
$ 10584 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2116 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 317 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:34:47
-->
