<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:06:50"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g58470" ref_strand="+" ref_description="C2_At3g58470">
      <seq>caaacactacactttttacactaaaatggagacagcgaaagacaccgtacagcacgacgccgttttgccggccggcgacgatgatactccgacgttaagctctcacgctctagaagcactgaaagagttcctcgccgagcagagccgagcagttgaggaagcttcgtcagctgcggcggaggatgacgtggcgctggtatcggaggattggcggctaagccagttctggtataaccgcgaaacagctgaaactatcgctaatgaagtcctcaatctctgccggtcgattgattcgccggcgattgcctgcattgcttgccccacactttatgcttatctcaagaaaattgaccctaatgcacctgcacaaattctcgagtatgacaaacggtttgaacagtatggaagtgagttcacattctacgactacaacctaccagaagatctcccttcttcaatgaaacactcatatccaataattgttgcagatcctccttacctgagtcaggaatgcttagagaaagtttctaaaacaatttcttttctcacgagaccaggacaagcctacttgcttttactcacaggtgaagtgcaaagtggtagggcttccgagctcttgggtttacgtccatgtgcttttaggccagatcactccagcaaactaggcaatgaatttcgactgtttacaaattatgaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="7357" stop="11189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7657" g_stop="7999" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9053" g_stop="9211" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="502" r_length="159" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068">
            <donor d_prob="0.559" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10280" g_stop="10361" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="584" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10775" g_stop="10889" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="585" r_stop="699" r_length="115" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="C2_At3g58470" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g58470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7657" e_stop="7999"/>
          <exon e_start="9053" e_stop="9211"/>
          <exon e_start="10280" e_stop="10361"/>
          <exon e_start="10775" e_stop="10889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAGGTAAGGTGCTTTAATCTAGCAAAAATGAGTTGTTGAAGCTTTACCTTTACCATTTCAGATTAAATTAATTGTTGAAATACAGCCACTGATATATGCTTAACTGATTGAATGATGAGTCTATGCGAGTTTAATAGAATTTTTGTATGATGGATGGTAAAAATAAGCTTGATTTTTAGTATGAGAAAAAAGATGTTAACTAAGAAAAATCTTGACGAGAAGAGATAGTTTGGTACTTGTATATTTAGCATCAGAGGTATTGAGGAAGGGAGTTTATTAATATATGTAGTACCAGAGCTAGTTCATTATCTTCGTTTGCCGATTTCTTTTCCAGAAAGGAGGCATGCTAGGTGGAGCTGTCATGTCGTATATAAATGTCCTATGTCGTGTCTTTCATTCTCTCGGTTTGGATTTGTGCATTTGTTTTTTGAGTTTAGCTGGTTCCAAAAGCAGTTGGTTTGATTTTAAAACCAAACACGGATGATAAATTATTTCACCGTTGCGGGGAGGTTGCATGCAAAAGTAATAAACACGTGAGAAACAAAAATTCTTTTCAAAAGCTTACGTTTAATTGTTCTGTGTACATTCGTCTATATTCCCTTGAGGTTCTATTTAATCTTTATATTTGTCTGTAAAGTATTTGCAAGTTCATTTGTGGATTGTATAAGAAATTTATATTTTGTGTCACGTTCTTTCAAGCATGATATTGTACTATTTAAAGTACTTGTGAAGCAACATTTTTCTTACATTTTCCTCTCCTCTAGGGCTACTTATAGTAACTTTTATTTGTTCTGATAAAGTATTTTTAGTACCTTAACTTGGAAAGTTGGCAAGACTAAAGCATAATACAATGCATCACTTTTCTTTAATGTAGCTTCTGTATCCAATTATATGTTATTCTTCTTTTTCGAAGTTAGTAGGTTCATAGCCCCATTGCCAGATTGTCGCTTTAGTTTGGAACTTGAGTGTAGTCAATTGTTTATCTGATCTTTAGTTATTCATGGTGAACTATATTTTTCCTACATCTTATGCTTTGTTTTATGCATGCGGTCTCAGAAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTGGTGAGAGCTGATATATGCTGTACACTGAAGTGGTTCTATGATAAATAAAGAGTAAACTTTTTTTTACTGTATTTCATTTTTATTTGCGACTAATTTGATTTCTGAAGTTCCCTATATACTTTAGAGATATCTAAAAATAGATTGTCCTCTTATATTCAGAATTGCCTACAGTCGAATAGCATCCATTGCTTAATTACGGGTTTCTCACCTTTGGATGGGATGGTATATGAAAAAAATGCATAGTTTGCATGAAAGTATCCCAAATCTTGACTGTTTCATAGTCTAGCATGCAAGTTTAAGTCAACCTTATTCTTTCCCTTTTCTTTCCTTCTCGCAATTTGTTCATCTTAATTTCAAATGTCTTCTATCATGAAAATTCACCTTTTAATCTCATGCTTCTTTTCAATTTCTATATTAATGAGAAAATTCAGAGCTTGCCTTGATTGTTCATTTTTCTGATTTGTTATTTTCGGTGCGATAGGGATATCTTAATGTTTAGTTGGAAAATACTCATCAAAATTGTTTATAAAAAAATGTTCATAAACATTGCTTTTATCTTTATGTCTCCTTCTTTTGTTTTCTTTGTCTGCATTGTCTTTACCTTTTATTGATCTACATTTCAAAGGTCAGCATGGATTACTTCTAAACCTCAAGGTCCCTTTCCCTCTCTCTCTTATGTGAGGATTCAGCTTAAAAAGAACCTGAAGATAGGCTTGTCTGCAATGGACCTTTAGAGCATCTTCAGCTATATTAGAAGGCTGTTTTTAACGTAGAATTGATAGATACCTCTCGTTCAGTTAACCTCTTTAATCTCTGTTAGGAAACTATCTCCTTATGCTCTGTCGTGGCAATGAAGATGATTTATTCCCATTACTTTGTCTTGTGCAAGTTTGACATTCATCTGATGATTCGTCCAATACCTTTTTTCTTTTATGATTCAGAGTGAGGAATGCTATGAAAGTGAATAGATCACATCATTGTCATTACTCATTAGTTGTCTTGTGCAATTTTGACATTTATGCAATGATTTATTTAAATATCTTCTCTTTTTCTTTTTTAAAATTTCAGAGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAGGTACATACTGAATTTTATGCAGTGTTTTACGACTTGGTCTCCCGTTGGCTGTCGTTCATCATGTTAATGGTCATTGAATCTAGTTATTGTTTTTTAAGGATCCTTAAACAATGAATCCAGTTATCTCTGCCTGTGTTCATTCTTCATGGTTGTCATCAAACTGTTCACTAATTTTATTAGTTGCAAACATTATGTTGATGAAAAAGTTGAAACTATCAAATGAGTTAGCATCAAGGTTTATCGATTTTCAGACGCCTCCTAAGCAAAAAGAGGAACTTTTTTTGAAGCAGAAATTACTGAAGAAAAGAAAGGAGAAAGAGTGGAGAAAATGAAGAAGGATATCCTGTCTTTAAAATAACCAGAGTAAATATGCCTCAAATGTTATCACTTCTCTTTCTCTTTTGGACATGCAGGTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCC</genome_strand>
        <mrna_strand>CAAACACTACACTTTTTACACTAAAATGGAGACAGCGAAAGACACCGTACAGCACGACGCCGTTTTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAAGAGTTCCTCGCCGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGCGAAACAGCTGAAACTATCGCTAATGAAGTCCTCAATCTCTGCCGGTCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGCCCCACACTTTATGCTTATCTCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTCCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCAGGAATGCTTAGAGAAAGTTTCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGTGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAATTATGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g58460" ref_strand="+" ref_description="C2_At3g58460">
      <seq>caaatattgtttctgaggcgggattacagacaaggatgggacagtggtgggaaggaattcctatccttacatctgcagtagtggttgtttgtgggataatatacttggtttgccttctggttgggtatgactcatttgctgaagtatgcttctggccatctgctgtaatttctcgatttcaagtttacaggatttttacctcaattctgtttcatggttctctactgcatgttctgtttaatatgttagctttggtccctttgggttcagagctggagaggattatgggatcagtgcgcctgttatatataattgttctgttggccgttagcaatgccttactccatcttcttatagcattgttggttgcccatattccccttcatccttatccatactttatggacgagtgtgctataggtttctcaaggatcttattttcaatgattgtgatggagacaagtctaagtggggcccaaactagaagtgtgtttggggcttttaatgtgcctgctaaatggtatgcattgatcttactgggtggtatttcagcttgttatgactaatgtctncttacttggacatcttttgtgtattttgtctggatttgcatatacatatggattgttcaatgtcttaatacctgngacttctttcttctcggctattgaatcttccacttggctatcaacttgtgtgaggagaccaaagtttattatgtgtactgggtggtaatggtgcaggatacctacccacacattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="15065" stop="18365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15380" g_stop="15545" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="183" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16369" g_stop="16672" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="487" r_length="304" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16928" g_stop="16960" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="520" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92">
            <donor d_prob="0.444" d_score="0.00"/>
            <acceptor a_prob="0.968" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17053" g_stop="17144" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="613" r_length="93" r_score="0.913"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160">
            <donor d_prob="0.837" d_score="0.90"/>
            <acceptor a_prob="0.966" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17305" g_stop="17378" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="687" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17379" i_stop="17988" i_length="610">
            <donor d_prob="0.874" d_score="0.96"/>
            <acceptor a_prob="0.880" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17989" g_stop="18065" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="688" r_stop="765" r_length="78" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="C2_At3g58460" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g58460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15380" e_stop="15545"/>
          <exon e_start="16369" e_stop="16672"/>
          <exon e_start="16928" e_stop="16960"/>
          <exon e_start="17053" e_stop="17144"/>
          <exon e_start="17305" e_stop="17378"/>
          <exon e_start="17989" e_stop="18065"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAGGTAGGTTCACTTATAGTGCTGTTTTTCCTTCCTTAAAAAAACAAGGTGTACATATATAGTGCTGCTGATACATTAAAATGTGCCTTTTAAAAAGAAATTCTGCCTGCACTCAAATTACTCTATTCTTAGTGGAAAGACTAATTTGATGGAATCTTGTCAACTATTTGAGGATAATTATACATTGCTATTGCTTAGTGATCATTGATGAGTTGTTTGGGGGGTGGTTTCACTTAGAGTGCTGTTTTTCCTTCCTAAAAAAACAAGGTTTGCATATATAGTGCTGCTCATACATCAAAATGTGCCTGCACTGAAATTGCTCTATTCTTAGCTGAAAGATAAATTTGATGAAACTTGTCAACGATTAGGATAATTATACAATGCTATTGCTTAGTAATCATTGATGAGTTGTTTGGGGGGGTGGGGGGAGCAATGTGGCTGAGGTGGTTATTTGAGTAGGACTACTTTCTGCCTATCAATTGATCAATTTCTTTAGTTGTTCACTTTCTTTTGAAGACTTTGTAACCTTACTCTTTCATGTAATTTTACTCATCTCTTCTCATGCATTTGCCACGCGTGGCTATGAATTGATCAATTTCTTTAGTGGACCTATGAATGAGCTATCTTTCTTGCTTAGTTTCGAACTCATGATACATAGCCATTTTAATAATTTTCGTATTTGTCATCCACTACTGATGAATCACGTAATTCAACTTTGATTTGCTGGCTTGGTAGTGCATGCAAATCTTTTTGTGGAGCTATAATTTTGATGTCATTTCTTCCCTTTGTCATATGTATTGATTTTAATTTTGTGTTTCTGTTGCAGTTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAGGTTTGTTGCTTTCCTGTTTTTGGATCAGATTCTTCTTAAATCATTAAATTATTATTTTTCCTTCTTCCCTTCCCTTTGTACAAGTTTGGAATTCCTTTTATAAATCAGTGATCTTGTATATGCATGTCATATATGAGAATAGATAGATACACAAAAAATTATTCGACATTAGATGTGAATGGTTACATTAGATCAATTATTACTTATTGGAATCATGAGTTTGCTAATGTGAGTGTGCCTTTTGTCTTTTTGCAGTGTGTTTGGGCTTTTTAATGTGCCAGCTAAATGGTAACTAGTTTACTTACCGATAATTGTAAGTTTGTTTTATTTTTTTTACTGTGTGCGTCTTATGCTATAATGTTTGATTATTTTTTCACTAGGTATGCATTGATCTTACT-GGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTGGATTTGCATGTAAGTTACTTCCATTATGCTGGACCCTCTTCAAGTTTTTCAAATTCTATTCTATGTTATTTTTGGTATCATGATAATTATATGAACAATCTTTATATATTTGTGGTCGCTTAACTTATAATTTTTTTTCTTTTTTCCTTCTTTTTCTTGATGGTACCAGATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGCTAGTAAGTTCCTAAGAAACGATATCAAGATATTCCAATATTTCTTATTGGACCACTTGCGTGTTCAACTATGCTGATTCTGCTTCTTTTAAGTCCTTATGCTGATGCTATATGTTCTCTACTATAAAATCCCAAAAACAAGTTTCTAAATAGGCCTTATTATTTCTCTTGTTCATTCTTTTCTCAATTGTTAAATGTAAAATCTGACTGGAATAACACTCAAAAGAGTGTAGAAGAGCCCAATAAGTTGATAAGCGAAGACCAGTAATTAACGAACTCCACGAGACTTATATTTTATAGCTGTAGAAAAGAATTAAAAATATAAGGCATTTACCTGTGCCCATTTTCACAAAAAAGTGAATGGGGTATCTTTGCTCCCTTTTGATTGTGAAACCAGTTATGTTCATTTGGGTTATGTACATTTAACTTGAACAAAAGAGAAATTGTTTTCTTATATTGAAAATTTGGATTATCATATAATACATTTTTAGTGGTTGAGCATGCTTTCTCCAAGGCATATCAAAACCCTTGCCCACCTTAAAATTTCATTTGTTTGGTTTCAATAGCATAATGAAATTTGCAAAATACTTATATATTTCTCTCTTCTCGGCAGTCAACTTGTGTGAGGAGACCAAAGTTTATTATGTGCACT-GGTGGTAATGGTGCAGGATACCTACCGACACATTCAAA</genome_strand>
        <mrna_strand>GCGGGATTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAGTAGTGGTTGTTTGTGGGATAATATACTTGGTTTGCCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACAGGATTTTTACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCGTTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATATTCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAAGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTAAGTGGGGCCCAAACTAGAAG...............................................................................................................................................................................................................................................................TGTGTTTGGGGCTTTTAATGTGCCTGCTAAATG............................................................................................GTATGCATTGATCTTACTGGGTGGTATTTCAGCTTGTTATGACTAATGTCTNCTTACTTGGACATCTTTTGTGTATTTTGTCTGGATTTGCAT................................................................................................................................................................ATACATATGGATTGTTCAATGTCTTAATACCTGNGACTTCTTTCTTCTCGGCTATTGAATCTTCCACTTGGCTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTTGTGTGAGGAGACCAAAGTTTATTATGTGTACTGGGTGGTAATGGTGCAGGATACCTACCCACACATTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT57-F" ref_strand="-" ref_description="CT57-F">
      <seq>caagtggatcacatgctttgttttatggagaagaaaagcacgcagatgcaagtccccatttggatcatcgaccaacaatccaggcttgctaatgcttttagccaagggacctcatgtggagcagtggagatgtctgatgagcacgcaggtgtaaaaaccagctccaagtagtccacatcgatcactgaagactgtaacataaacgtcagtacgaaagggattgtagtcagattgattgctttttcattttactttctttctcccccttgtatttcttgctgcagcaaattgtgggttcactttccactgtgttcttccccttaattcatggaattgtaacctttggttgaaccagtgtcatcgaaaatatagatgttccactgccagtttggaacttgtgaataattgtgatcaatatggcttgtttggtctctactcaagtttttatttttctttttacctgtatattacaacttgtgaatgaattttttctcttggtactttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="54597" stop="55884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54676" g_stop="54679" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54680" i_stop="54900" i_length="221">
            <donor d_prob="0.617" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54901" g_stop="54947" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="51" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54948" i_stop="55126" i_length="179">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55127" g_stop="55584" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="509" r_length="458" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="510" polyA_stop="524"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="CT57-F" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="CT57-F" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54676" e_stop="54679"/>
          <exon e_start="54901" e_stop="54947"/>
          <exon e_start="55127" e_stop="55584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGTAGACCTAAAGTCATGTTGTTAAGTTGTCTCAAATGACCTACAATCTCTAGAAACAATGTGGACCTAGCTTAGGATCATAGAAAATCAATTTGTTTTATTCTGACATCAATATTTCTCTCTCATCTCCGTCAATCCGCCTTTCTTATTTTGCCTTCCTGTTTCTGTGTTGTCTTCTGATTTATACTTAAGCTGATTTATCTTATTTTCTTTTTTATTCAGTGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAAGTGAGTTGATCATTGCGATTCTGTTTCTTTTCAATAAATTGTTTCTATACTCCTTCAACTTCCTACGATTCTCTTACCTTAGAAAAGAAAGCAACAACCTATTTCCCTTTCTGTCTGCTTGAGTTTAGTTGTTTGTTTGAGCAACTTTTAACATTCGATTAAATCTTGATACTTGTTAGGTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</genome_strand>
        <mrna_strand>CAAG.............................................................................................................................................................................................................................TGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAA...................................................................................................................................................................................GTCCCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGCCAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTTTCCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGTTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="CT57-R" ref_strand="-" ref_description="CT57-R">
      <seq>atcacatgctttgttttatggagaagaaaagcacgcagatgcaagtacccatttggatcatcgaccaacaatccaggcttgctaatgcttttagacaagggacctcatgtggagcagtggagatgtctgatgagcacgcaggtgtaaaaaccagctccaagtagtccacatcgatcactgaagactgtaacataaacgtcagtacgaaagggattgtagtcagattgattgctttttcattttactttctttctcccccttgtatttcttgctgcagcaaattgtgggttcactctgcactgtgttcttccccttaattcatggaattgtaacctttggctgaaccagtgtcatcgaaaatatagatgttccactgccagtttggaacttgtgaataattgtgatcaatatggcttgtttggtctctactcaagtttttatttttctttttacctgtatattacaacttgtgaatgaattttttctcttggtactttttcttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="54604" stop="55884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54904" g_stop="54947" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54948" i_stop="55126" i_length="179">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55127" g_stop="55584" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="502" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="517"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="CT57-R" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="CT57-R" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="54904" e_stop="54947"/>
          <exon e_start="55127" e_stop="55584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAAGTGAGTTGATCATTGCGATTCTGTTTCTTTTCAATAAATTGTTTCTATACTCCTTCAACTTCCTACGATTCTCTTACCTTAGAAAAGAAAGCAACAACCTATTTCCCTTTCTGTCTGCTTGAGTTTAGTTGTTTGTTTGAGCAACTTTTAACATTCGATTAAATCTTGATACTTGTTAGGTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</genome_strand>
        <mrna_strand>ATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAA...................................................................................................................................................................................GTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="T0997" ref_strand="+" ref_description="T0997">
      <seq>taacaagtgggatagaaagatagtaacagaggagacaagcaagtttcctgaactcagtctgcagtcagaaacagagcagcgaccacacaaagtcagtttctatgttcagaaagagaaagctcaagatataatgaaaactctttccaagcgcttgaaagaacgtgggctggatgtcaaaataatttacagtggagggatggatctagatatcttaccacaaggtgctggcaaaggacaagcacttgcatatctgcttaagaaactgaagagcgagggaaaattaccaagcaacacccttgcctgcggtgactccgggaatgacgctgagttattcagtatcccagatgtgtatggtgtaatggtagctaatgcgcaggaggaattactgcagtggcatgctgcaaatgcaaaaaataatcccaaagtaattcatgcatcaaagaggtgtgctgccggtatcatacaagccattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="73997" stop="75501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74297" g_stop="74360" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74529" g_stop="74630" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="166" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74797" g_stop="74991" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="361" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98">
            <donor d_prob="0.748" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75090" g_stop="75201" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="473" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="T0997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="T0997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74297" e_stop="74360"/>
          <exon e_start="74529" e_stop="74630"/>
          <exon e_start="74797" e_stop="74991"/>
          <exon e_start="75090" e_stop="75201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAGGTATGTTTATGGTTGACATCAGATCATATGCTAATTCAGTTTCAATTACCAAGATTGAAGTGAATTCTATTAACTTGAAAATGAAGTATGGTTTAAAAATAGTTTGTAAGCTGAAATATAACTTGAGCAATTGATATCTATAAAAGCAACTTCTTTTGATCCGTGCAGTCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGGGTATGATATAAATTTTTCACTTCAGATTTGGCATCAATATGACTAGGTTCATATAGGAAGATGAAATCATGTTGTTCTTGCTATGCTCCCAGTGAACACAATTCTTTTAGATTCGTGTTGAGCTTCATCTTTTTTTATCTCATTTATTTTCTGTCGTGATCATCAGCTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATGGTTGGTAGTTCAGCTATTATCCAACATATCTTTATAATCGGGTAATATATTCTCGTGTTTGTGATGAGAAGTACTCTGAAAATGTACACACTTTACAGGTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTG</genome_strand>
        <mrna_strand>TAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG........................................................................................................................................................................TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG......................................................................................................................................................................CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG..................................................................................................GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAAAGAGGTGTGCTGCCGGTATCATACAAGCCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_markers" ref_id="C2_At3g11690" ref_strand="+" ref_description="C2_At3g11690">
      <seq>ttaattctccagctattttcggagaggggtaatttttttccattttgaagatccaataaatcttcttcccccactccgaaaatatcatcatccttatgaaatcgaattttttcgaaaaaaattaaaattaaaaattttaaaaataaaaaattaaaattagggcatgacgagaccaataatcataccttcgcctccgttactgtctctggataaacggcagccgctattatcgagtaacgattcatcgcgcggcgtcgtacgcggtagcagcagcagcggcggcggcgggagtgttgttcggagagcgcgattagcggaggtcgccggcggtacgacggcggaatgtgcggcggtggcgtgttgttgtccttgcgggatagcgaatttgttggttctagcggtgtataaggttccggctggactttgtagaaaggctttgaggaaaaatcgccgggatcggttgatgaaaaaggggcttttgccggcgacgggaagtggacattgtagctgtgatgaaatggagcttcatgcttaccagatttctagtccgattgcgatggtcggcgccggcgccggaaacctagcaaccgataaggatgctttggagctggagaaggaaatgtgggataagttttacggtactgggttctggagaagcccatctcaacgaagtgaaatgtaacggcttgggatgaattaatgtgtataggtggttgaatgaagaagagggagaaattgttctattttctttcttttttaatattttaaactctctttgtaattaaaaactcttttaaactcttgtatccaccaaagcaatctttgtattatattcttcaatttctttgtcatattttcatttcaagaatcaaaatcaaagtatattgttcatttccaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0021O12-JtbQM/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C10HBa0021O12.1" temp_strand="+" temp_description="C10HBa0021O12.1  AC238919.5 htgs_phase:2 submitted_to_sgn_as:C10HBa0021O12 upload_account_name:manual">
        <position start="94577" stop="96454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94877" g_stop="95561" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95953" g_stop="96135" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="878" r_length="194" r_score="0.809"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="897" polyA_stop="910"/>
      <MATCH_line gen_id="C10HBa0021O12.1" gen_strand="+" ref_id="C2_At3g11690" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0021O12.1" gen_strand="+"/>
        <rDNA rDNA_id="C2_At3g11690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94877" e_stop="95561"/>
          <exon e_start="95953" e_stop="96135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATTCTCCAGCT-TTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACGGTAATTTATACGATTAATTTATAAAATAAGTTAATTCTATATATCAAAAATCAAAATTAGACTTTCAATTTATCATAATAATAATAGAGTGTTAAATAGTCACTCATTATGCTATTATCGAACTAAATTTATGATGAATTTCGGAAAATAAAGTGAAAACGCAACATCCTTTATCCATTACTTCGAAATCTTTCGTAAATTCATATCAATTCCTCTTTGTAGCTCGTAAAATGAATTAATTTCATAAATTCCATAATATTGGTATTTCATCATGCTTGTTTTAGGTAATTTTTTTAATTTATAAATATTATTTATCTTGTAAAATTAATCGAGGTATAATTTGCGATTATTATGATTATAATCAATTGTGTATGTTTGTTGTAATTTTCAGGCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATT---AA-------AAACTCTTGTATCCACC-AAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATCAA</genome_strand>
        <mrna_strand>TTAATTCTCCAGCTATTTTCGGAGAGGGGTAATTTTTTTCCATTTTGAAGATCCAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAA--TTTTAAAAATAAAAAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCGGCGGCGGCGGGAGTGTTGTTCGGAGAGCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGAAGCCCATCTCAACGAAGTGAAATGTAACG.......................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAATTGTTCTATTTTCTTTCTTTTTTAATATTTTAAACTCTCTTTGTAATTAAAAACTCTTTTAAACTCTTGTATCCACCAAAGCAATCTTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCAAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7657" PGL_stop="10889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7657" e_stop="7999"/>
            <exon e_start="9053" e_stop="9211"/>
            <exon e_start="10280" e_stop="10361"/>
            <exon e_start="10775" e_stop="10889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="0.965"/>
          <exon-intron don_prob="0.559" acc_prob="0.987" e_score="0.994"/>
          <exon-intron don_prob="0.986" acc_prob="0.983" e_score="0.988"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="7657" e_stop="7999" e_length="343"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="8000" i_stop="9052" i_length="1053"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="9053" e_stop="9211" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.559" acc_prob="0.987">
            <gDNA_intron_boundary i_start="9212" i_stop="10279" i_length="1068"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="10280" e_stop="10361" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.983">
            <gDNA_intron_boundary i_start="10362" i_stop="10774" i_length="413"/>
          </intron>
          <exon e_serial="4" e_score="0.983">
            <gDNA_exon_boundary e_start="10775" e_stop="10889" e_length="115"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7657" stop="7999"/>
              <exon start="9053" stop="9211"/>
              <exon start="10280" stop="10361"/>
              <exon start="10775" stop="10889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g58470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAACATTACACTTTTTACACTAAAATGGAGACAGCGAGAGACACCGTACAGCACGACGCCGTTCTGCCGGCCGGCGACGATGATACTCCGACGTTAAGCTCTCACGCTCTAGAAGCACTGAAGGAGTTCCTTGCTGAGCAGAGCCGAGCAGTTGAGGAAGCTTCGTCAGCTGCGGCGGAGGATGACGTGGCGCTGGTATCGGAGGATTGGCGGCTAAGCCAGTTCTGGTATAACCGTGAAACAGCTGAAACTGTCGCTAATGAAGTCCTTAATCTCTGTCGATCGATTGATTCGCCGGCGATTGCCTGCATTGCTTGTCCCACACTTTATGCTTATCTCAAG : AAAATTGACCCTAATGCACCTGCACAAATTCTCGAGTATGACAAACGGTTTGAACAGTATGGAAGTGAGTTCACATTCTACGACTACAACCTACCAGAAGATCTTCCTTCTTCAATGAAACACTCATATCCAATAATTGTTGCAGATCCTCCTTACCTG : AGTCAGGAATGCTTAGAGAAAGTTGCTAAAACAATTTCTTTTCTCACGAGACCAGGACAAGCCTACTTGCTTTTACTCACAG : GTGAAGTGCAAAGTGGTAGGGCTTCCGAGCTCTTGGGTTTACGTCCATGCGCTTTTAGGCCAGATCACTCCAGCAAACTAGGCAATGAATTTCGACTGTTTACAAACTATGACCC</gDNA_template>
            <first_frame> Q  T  L  H  F  L  H  *  N  G  D  S  E  R  H  R  T  A  R  R  R  S  A  G  R  R  R  *  Y  S  D  V  K  L  S  R  S  R  S  T  E  G  V  P  C  *  A  E  P  S  S  *  G  S  F  V  S  C  G  G  G  *  R  G  A  G  I  G  G  L  A  A  K  P  V  L  V  *  P  *  N  S  *  N  C  R  *  *  S  P  *  S  L  S  I  D  *  F  A  G  D  C  L  H  C  L  S  H  T  L  C  L  S  Q   : E  N  *  P  *  C  T  C  T  N  S  R  V  *  Q  T  V  *  T  V  W  K  *  V  H  I  L  R  L  Q  P  T  R  R  S  S  F  F  N  E  T  L  I  S  N  N  C  C  R  S  S  L  P   : E  S  G  M  L  R  E  S  C  *  N  N  F  F  S  H  E  T  R  T  S  L  L  A  F  T  H  R :   *  S  A  K  W  *  G  F  R  A  L  G  F  T  S  M  R  F  *  A  R  S  L  Q  Q  T  R  Q  *  I  S  T  V  Y  K  L  *  P </first_frame>
            <second_frame>  K  H  Y  T  F  Y  T  K  M  E  T  A  R  D  T  V  Q  H  D  A  V  L  P  A  G  D  D  D  T  P  T  L  S  S  H  A  L  E  A  L  K  E  F  L  A  E  Q  S  R  A  V  E  E  A  S  S  A  A  A  E  D  D  V  A  L  V  S  E  D  W  R  L  S  Q  F  W  Y  N  R  E  T  A  E  T  V  A  N  E  V  L  N  L  C  R  S  I  D  S  P  A  I  A  C  I  A  C  P  T  L  Y  A  Y  L  K  :  K  I  D  P  N  A  P  A  Q  I  L  E  Y  D  K  R  F  E  Q  Y  G  S  E  F  T  F  Y  D  Y  N  L  P  E  D  L  P  S  S  M  K  H  S  Y  P  I  I  V  A  D  P  P  Y  L  :  S  Q  E  C  L  E  K  V  A  K  T  I  S  F  L  T  R  P  G  Q  A  Y  L  L  L  L  T   : G  E  V  Q  S  G  R  A  S  E  L  L  G  L  R  P  C  A  F  R  P  D  H  S  S  K  L  G  N  E  F  R  L  F  T  N  Y  D   </second_frame>
            <third_frame>   N  I  T  L  F  T  L  K  W  R  Q  R  E  T  P  Y  S  T  T  P  F  C  R  P  A  T  M  I  L  R  R  *  A  L  T  L  *  K  H  *  R  S  S  L  L  S  R  A  E  Q  L  R  K  L  R  Q  L  R  R  R  M  T  W  R  W  Y  R  R  I  G  G  *  A  S  S  G  I  T  V  K  Q  L  K  L  S  L  M  K  S  L  I  S  V  D  R  L  I  R  R  R  L  P  A  L  L  V  P  H  F  M  L  I  S  R :   K  L  T  L  M  H  L  H  K  F  S  S  M  T  N  G  L  N  S  M  E  V  S  S  H  S  T  T  T  T  Y  Q  K  I  F  L  L  Q  *  N  T  H  I  Q  *  L  L  Q  I  L  L  T  * :   V  R  N  A  *  R  K  L  L  K  Q  F  L  F  S  R  D  Q  D  K  P  T  C  F  Y  S  Q  :  V  K  C  K  V  V  G  L  P  S  S  W  V  Y  V  H  A  L  L  G  Q  I  T  P  A  N  *  A  M  N  F  D  C  L  Q  T  M  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7658" stop="7999"/>
                    <exon start="9053" stop="9211"/>
                    <exon start="10280" stop="10361"/>
                    <exon start="10775" stop="10887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHYTFYTKMETARDTVQHDAVLPAGDDDTPTLSSHALEALKEFLAEQSRAVEEASSAAAEDDVALVSEDWRLSQFWYNRETAETVANEVLNLCRSIDSPAIACIACPTLYAYLKKIDPNAPAQILEYDKRFEQYGSEFTFYDYNLPEDLPSSMKHSYPIIVADPPYLSQECLEKVAKTISFLTRPGQAYLLLLTGEVQSGRASELLGLRPCAFRPDHSSKLGNEFRLFTNYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="15380" PGL_stop="18065"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15380" e_stop="15545"/>
            <exon e_start="16369" e_stop="16672"/>
            <exon e_start="16928" e_stop="16960"/>
            <exon e_start="17053" e_stop="17144"/>
            <exon e_start="17305" e_stop="17378"/>
            <exon e_start="17989" e_stop="18065"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.982" e_score="0.982"/>
          <exon-intron don_prob="0.993" acc_prob="0.983" e_score="0.984"/>
          <exon-intron don_prob="0.444" acc_prob="0.968" e_score="0.909"/>
          <exon-intron don_prob="0.837" acc_prob="0.966" e_score="0.913"/>
          <exon-intron don_prob="0.874" acc_prob="0.880" e_score="0.973"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="15380" e_stop="15545" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15546" i_stop="16368" i_length="823"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="16369" e_stop="16672" e_length="304"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.983">
            <gDNA_intron_boundary i_start="16673" i_stop="16927" i_length="255"/>
          </intron>
          <exon e_serial="3" e_score="0.909">
            <gDNA_exon_boundary e_start="16928" e_stop="16960" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.444" acc_prob="0.968">
            <gDNA_intron_boundary i_start="16961" i_stop="17052" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.913">
            <gDNA_exon_boundary e_start="17053" e_stop="17144" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.837" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17145" i_stop="17304" i_length="160"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="17305" e_stop="17378" e_length="74"/>
          </exon>
          <intron i_serial="5" don_prob="0.874" acc_prob="0.880">
            <gDNA_intron_boundary i_start="17379" i_stop="17988" i_length="610"/>
          </intron>
          <exon e_serial="6" e_score="0.948">
            <gDNA_exon_boundary e_start="17989" e_stop="18065" e_length="77"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15380" stop="15545"/>
              <exon start="16369" stop="16672"/>
              <exon start="16928" stop="16960"/>
              <exon start="17053" stop="17144"/>
              <exon start="17305" stop="17378"/>
              <exon start="17989" stop="18065"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g58460" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGGGACTACAGACAAGGATGGGACAGTGGTGGGAAGGAATTCCTATCCTTACATCTGCAATAGTGGTTGTTTGTGGGATAATATACTTGGTTTGTCTTCTGGTTGGGTATGACTCATTTGCTGAAGTATGCTTCTGGCCATCTGCTGTAATTTCTCGATTTCAAG : TTTACAGGATTTTCACCTCAATTCTGTTTCATGGTTCTCTACTGCATGTTCTGTTTAATATGTTAGCTTTGGTCCCTTTGGGTTCAGAGCTGGAGAGGATTATGGGATCAGTGCGCCTGTTATATATAATTGTTCTGTTGGCCATTAGCAATGCCTTACTCCATCTTCTTATAGCATTGTTGGTTGCCCATAATCCCCTTCATCCTTATCCATACTTTATGGACGAGTGTGCTATAGGTTTCTCAGGGATCTTATTTTCAATGATTGTGATGGAGACAAGTCTCAGTGGGGCCCAAACTAGAAG : TGTGTTTGGGCTTTTTAATGTGCCAGCTAAATG : GTATGCATTGATCTTACTGGTGGTTTTTCAGCTTGTTATGACTAATGTCTCTTTACTTGGACATCTTTGTGGTATTTTGTCTGGATTTGCAT : ATACATATGGATTGTTCAATGTCTTAATACCTGGGACATCTTTCTTCTCGGCTATTGAATCTTCCACTTGGCTA : TCAACTTGTGTGAGGAGACCAAAGTTTATTATGTGCACTGGTGGTAATGGTGCAGGATACCTACCGACACATTCAAA</gDNA_template>
            <first_frame> A  G  L  Q  T  R  M  G  Q  W  W  E  G  I  P  I  L  T  S  A  I  V  V  V  C  G  I  I  Y  L  V  C  L  L  V  G  Y  D  S  F  A  E  V  C  F  W  P  S  A  V  I  S  R  F  Q   : V  Y  R  I  F  T  S  I  L  F  H  G  S  L  L  H  V  L  F  N  M  L  A  L  V  P  L  G  S  E  L  E  R  I  M  G  S  V  R  L  L  Y  I  I  V  L  L  A  I  S  N  A  L  L  H  L  L  I  A  L  L  V  A  H  N  P  L  H  P  Y  P  Y  F  M  D  E  C  A  I  G  F  S  G  I  L  F  S  M  I  V  M  E  T  S  L  S  G  A  Q  T  R  S :   V  F  G  L  F  N  V  P  A  K  W :   Y  A  L  I  L  L  V  V  F  Q  L  V  M  T  N  V  S  L  L  G  H  L  C  G  I  L  S  G  F  A   : Y  T  Y  G  L  F  N  V  L  I  P  G  T  S  F  F  S  A  I  E  S  S  T  W  L  :  S  T  C  V  R  R  P  K  F  I  M  C  T  G  G  N  G  A  G  Y  L  P  T  H  S   </first_frame>
            <second_frame>  R  D  Y  R  Q  G  W  D  S  G  G  K  E  F  L  S  L  H  L  Q  *  W  L  F  V  G  *  Y  T  W  F  V  F  W  L  G  M  T  H  L  L  K  Y  A  S  G  H  L  L  *  F  L  D  F  K  :  F  T  G  F  S  P  Q  F  C  F  M  V  L  Y  C  M  F  C  L  I  C  *  L  W  S  L  W  V  Q  S  W  R  G  L  W  D  Q  C  A  C  Y  I  *  L  F  C  W  P  L  A  M  P  Y  S  I  F  L  *  H  C  W  L  P  I  I  P  F  I  L  I  H  T  L  W  T  S  V  L  *  V  S  Q  G  S  Y  F  Q  *  L  *  W  R  Q  V  S  V  G  P  K  L  E   : V  C  L  G  F  L  M  C  Q  L  N   : G  M  H  *  S  Y  W  W  F  F  S  L  L  *  L  M  S  L  Y  L  D  I  F  V  V  F  C  L  D  L  H  :  I  H  M  D  C  S  M  S  *  Y  L  G  H  L  S  S  R  L  L  N  L  P  L  G  Y :   Q  L  V  *  G  D  Q  S  L  L  C  A  L  V  V  M  V  Q  D  T  Y  R  H  I  Q  </second_frame>
            <third_frame>   G  T  T  D  K  D  G  T  V  V  G  R  N  S  Y  P  Y  I  C  N  S  G  C  L  W  D  N  I  L  G  L  S  S  G  W  V  *  L  I  C  *  S  M  L  L  A  I  C  C  N  F  S  I  S  S :   L  Q  D  F  H  L  N  S  V  S  W  F  S  T  A  C  S  V  *  Y  V  S  F  G  P  F  G  F  R  A  G  E  D  Y  G  I  S  A  P  V  I  Y  N  C  S  V  G  H  *  Q  C  L  T  P  S  S  Y  S  I  V  G  C  P  *  S  P  S  S  L  S  I  L  Y  G  R  V  C  Y  R  F  L  R  D  L  I  F  N  D  C  D  G  D  K  S  Q  W  G  P  N  *  K  :  C  V  W  A  F  *  C  A  S  *  M  :  V  C  I  D  L  T  G  G  F  S  A  C  Y  D  *  C  L  F  T  W  T  S  L  W  Y  F  V  W  I  C  I :   Y  I  W  I  V  Q  C  L  N  T  W  D  I  F  L  L  G  Y  *  I  F  H  L  A   : I  N  L  C  E  E  T  K  V  Y  Y  V  H  W  W  *  W  C  R  I  P  T  D  T  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15380" stop="15545"/>
                    <exon start="16369" stop="16672"/>
                    <exon start="16928" stop="16960"/>
                    <exon start="17053" stop="17144"/>
                    <exon start="17305" stop="17378"/>
                    <exon start="17989" stop="18063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>744</number_coding_nucleotides>
                  <number_encoded_amino_acids>248</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGLQTRMGQWWEGIPILTSAIVVVCGIIYLVCLLVGYDSFAEVCFWPSAVISRFQVYRIFTSILFHGSLLHVLFNMLALVPLGSELERIMGSVRLLYIIVLLAISNALLHLLIALLVAHNPLHPYPYFMDECAIGFSGILFSMIVMETSLSGAQTRSVFGLFNVPAKWYALILLVVFQLVMTNVSLLGHLCGILSGFAYTYGLFNVLIPGTSFFSAIESSTWLSTCVRRPKFIMCTGGNGAGYLPTHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="54676" PGL_stop="55584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="54676" e_stop="54679"/>
            <exon e_start="54901" e_stop="54947"/>
            <exon e_start="55127" e_stop="55584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.617" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="54676" e_stop="54679" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.617" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54680" i_stop="54900" i_length="221"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54901" e_stop="54947" e_length="47"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.983">
            <gDNA_intron_boundary i_start="54948" i_stop="55126" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55127" e_stop="55584" e_length="458"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54676" stop="54679"/>
              <exon start="54901" stop="54947"/>
              <exon start="55127" stop="55584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT57-F" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54904" stop="54947"/>
              <exon start="55127" stop="55584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="CT57-R" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAG : TGGATCACATGCTTTGTTTTATGGAGAAGAAAAGCACGCAGATGCAA : GTACCCATTTGGATCATCGACCAACAATCCAGGCTTGCTAATGCTTTTAGACAAGGGACCTCATGTGGAGCAGTGGAGATGTCTGATGAGCACGCAGGTGTAAAAACCAGCTCCAAGTAGTCCACATCGATCACTGAAGACTGTAACATAAACGTCAGTACGAAAGGGATTGTAGTCAGATTGATTGCTTTTTCATTTTACTTTCTTTCTCCCCCTTGTATTTCTTGCTGCAGCAAATTGTGGGTTCACTCTGCACTGTGTTCTTCCCCTTAATTCATGGAATTGTAACCTTTGGCTGAACCAGTGTCATCGAAAATATAGATGTTCCACTGCCAGTTTGGAACTTGTGAATAATTGTGATCAATATGGCTTGTTTGGTCTCTACTCAAGTTTTTATTTTTCTTTTTACCTGTATATTACAACTTGTGAATGAATTTTTTCTCTTGGTACTTTTTCTT</gDNA_template>
            <first_frame> Q   : V  D  H  M  L  C  F  M  E  K  K  S  T  Q  M  Q  :  V  P  I  W  I  I  D  Q  Q  S  R  L  A  N  A  F  R  Q  G  T  S  C  G  A  V  E  M  S  D  E  H  A  G  V  K  T  S  S  K  *  S  T  S  I  T  E  D  C  N  I  N  V  S  T  K  G  I  V  V  R  L  I  A  F  S  F  Y  F  L  S  P  P  C  I  S  C  C  S  K  L  W  V  H  S  A  L  C  S  S  P  *  F  M  E  L  *  P  L  A  E  P  V  S  S  K  I  *  M  F  H  C  Q  F  G  T  C  E  *  L  *  S  I  W  L  V  W  S  L  L  K  F  L  F  F  F  L  P  V  Y  Y  N  L  *  M  N  F  F  S  W  Y  F  F   </first_frame>
            <second_frame>  K  :  W  I  T  C  F  V  L  W  R  R  K  A  R  R  C  K :   Y  P  F  G  S  S  T  N  N  P  G  L  L  M  L  L  D  K  G  P  H  V  E  Q  W  R  C  L  M  S  T  Q  V  *  K  P  A  P  S  S  P  H  R  S  L  K  T  V  T  *  T  S  V  R  K  G  L  *  S  D  *  L  L  F  H  F  T  F  F  L  P  L  V  F  L  A  A  A  N  C  G  F  T  L  H  C  V  L  P  L  N  S  W  N  C  N  L  W  L  N  Q  C  H  R  K  Y  R  C  S  T  A  S  L  E  L  V  N  N  C  D  Q  Y  G  L  F  G  L  Y  S  S  F  Y  F  S  F  Y  L  Y  I  T  T  C  E  *  I  F  S  L  G  T  F  S  </second_frame>
            <third_frame>   S :   G  S  H  A  L  F  Y  G  E  E  K  H  A  D  A   : S  T  H  L  D  H  R  P  T  I  Q  A  C  *  C  F  *  T  R  D  L  M  W  S  S  G  D  V  *  *  A  R  R  C  K  N  Q  L  Q  V  V  H  I  D  H  *  R  L  *  H  K  R  Q  Y  E  R  D  C  S  Q  I  D  C  F  F  I  L  L  S  F  S  P  L  Y  F  L  L  Q  Q  I  V  G  S  L  C  T  V  F  F  P  L  I  H  G  I  V  T  F  G  *  T  S  V  I  E  N  I  D  V  P  L  P  V  W  N  L  *  I  I  V  I  N  M  A  C  L  V  S  T  Q  V  F  I  F  L  F  T  C  I  L  Q  L  V  N  E  F  F  L  L  V  L  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55311" stop="55559"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFHFTFFLPLVFLAAANCGFTLHCVLPLNSWNCNLWLNQCHRKYRCSTASLELVNNCDQYGLFGLYSSFYFSFYLYITTCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="74297" PGL_stop="75201"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74297" e_stop="74360"/>
            <exon e_start="74529" e_stop="74630"/>
            <exon e_start="74797" e_stop="74991"/>
            <exon e_start="75090" e_stop="75201"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.912" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.748" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="74297" e_stop="74360" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.912">
            <gDNA_intron_boundary i_start="74361" i_stop="74528" i_length="168"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74529" e_stop="74630" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.970" acc_prob="0.975">
            <gDNA_intron_boundary i_start="74631" i_stop="74796" i_length="166"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74797" e_stop="74991" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.748" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74992" i_stop="75089" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="75090" e_stop="75201" e_length="112"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74297" stop="74360"/>
              <exon start="74529" stop="74630"/>
              <exon start="74797" stop="74991"/>
              <exon start="75090" stop="75201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="T0997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAACAAGTGGGATAGAAAGATAGTAACAGAGGAGACAAGCAAGTTTCCTGAACTCAGTCTGCAG : TCAGAAACAGAGCAGCGACCACACAAAGTCAGTTTCTATGTTCAGAAAGAGAAAGCTCAAGATATAATGAAAACTCTTTCCAAGCGCTTGAAAGAACGTGGG : CTGGATGTCAAAATAATTTACAGTGGAGGGATGGATCTAGATATCTTACCACAAGGTGCTGGCAAAGGACAAGCACTTGCATATCTGCTTAAGAAACTGAAGAGCGAGGGAAAATTACCAAGCAACACCCTTGCCTGCGGTGACTCCGGGAATGACGCTGAGTTATTCAGTATCCCAGATGTGTATGGTGTAATG : GTAGCTAATGCGCAGGAGGAATTACTGCAGTGGCATGCTGCAAATGCAAAAAATAATCCCAAAGTAATTCATGCATCAGAGAGGTGTGCTGCCGGTATCATACAAGCCATTG</gDNA_template>
            <first_frame> *  Q  V  G  *  K  D  S  N  R  G  D  K  Q  V  S  *  T  Q  S  A   : V  R  N  R  A  A  T  T  Q  S  Q  F  L  C  S  E  R  E  S  S  R  Y  N  E  N  S  F  Q  A  L  E  R  T  W   : A  G  C  Q  N  N  L  Q  W  R  D  G  S  R  Y  L  T  T  R  C  W  Q  R  T  S  T  C  I  S  A  *  E  T  E  E  R  G  K  I  T  K  Q  H  P  C  L  R  *  L  R  E  *  R  *  V  I  Q  Y  P  R  C  V  W  C  N   : G  S  *  C  A  G  G  I  T  A  V  A  C  C  K  C  K  K  *  S  Q  S  N  S  C  I  R  E  V  C  C  R  Y  H  T  S  H   </first_frame>
            <second_frame>  N  K  W  D  R  K  I  V  T  E  E  T  S  K  F  P  E  L  S  L  Q  :  S  E  T  E  Q  R  P  H  K  V  S  F  Y  V  Q  K  E  K  A  Q  D  I  M  K  T  L  S  K  R  L  K  E  R  G  :  L  D  V  K  I  I  Y  S  G  G  M  D  L  D  I  L  P  Q  G  A  G  K  G  Q  A  L  A  Y  L  L  K  K  L  K  S  E  G  K  L  P  S  N  T  L  A  C  G  D  S  G  N  D  A  E  L  F  S  I  P  D  V  Y  G  V  M  :  V  A  N  A  Q  E  E  L  L  Q  W  H  A  A  N  A  K  N  N  P  K  V  I  H  A  S  E  R  C  A  A  G  I  I  Q  A  I  </second_frame>
            <third_frame>   T  S  G  I  E  R  *  *  Q  R  R  Q  A  S  F  L  N  S  V  C  S :   Q  K  Q  S  S  D  H  T  K  S  V  S  M  F  R  K  R  K  L  K  I  *  *  K  L  F  P  S  A  *  K  N  V  G :   W  M  S  K  *  F  T  V  E  G  W  I  *  I  S  Y  H  K  V  L  A  K  D  K  H  L  H  I  C  L  R  N  *  R  A  R  E  N  Y  Q  A  T  P  L  P  A  V  T  P  G  M  T  L  S  Y  S  V  S  Q  M  C  M  V  *  W :   *  L  M  R  R  R  N  Y  C  S  G  M  L  Q  M  Q  K  I  I  P  K  *  F  M  H  Q  R  G  V  L  P  V  S  Y  K  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74298" stop="74360"/>
                    <exon start="74529" stop="74630"/>
                    <exon start="74797" stop="74991"/>
                    <exon start="75090" stop="75200"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKWDRKIVTEETSKFPELSLQSETEQRPHKVSFYVQKEKAQDIMKTLSKRLKERGLDVKIIYSGGMDLDILPQGAGKGQALAYLLKKLKSEGKLPSNTLACGDSGNDAELFSIPDVYGVMVANAQEELLQWHAANAKNNPKVIHASERCAAGIIQAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="94877" PGL_stop="96135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94877" e_stop="95561"/>
            <exon e_start="95953" e_stop="96135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.980"/>
          <exon-only e_score="0.809"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="94877" e_stop="95561" e_length="685"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95562" i_stop="95952" i_length="391"/>
          </intron>
          <exon e_serial="2" e_score="0.809">
            <gDNA_exon_boundary e_start="95953" e_stop="96135" e_length="183"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94877" stop="95561"/>
              <exon start="95953" stop="96135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="C2_At3g11690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATTCTCCAGCTTTTTCGGAGAGGGGTAATTTATTTCCATTTTGAAGATCTAATAAATCTTCTTCCCCCACTCCGAAAATATCATCATCCTTATGAAATCGAATTTTTTCGAAAAAAATTAAAATTAAAAATTTTTTTAAAAAAATTAATTAAAATTAGGGCATGACGAGACCAATAATCATACCTTCGCCTCCGTTACTGTCTCTGGATAAACGGCAGCCGCTATTATCGAGTAACGATTCATCGCGCGGCGTCGTACGCGGTAGCAGCAGCAGCAGCGGCGGTGGGAGTGTTGTTCGGAGATCGCGATTAGCGGAGGTCGCCGGCGGTACGACGGCGGAATGTGCGGCGGTGGCGTGTTGTTGTCCTTGCGGGATAGCGAATTTGTTGGTTCTAGCGGTGTATAAGGTTCCGGCTGGACTTTGTAGAAAGGCTTTGAGGAAAAATCGCCGGGATCGGTTGATGAAAAAGGGGCTTTTGCCGGCGACGGGAAGTGGACATTGTAGCTGTGATGAAATGGAGCTTCATGCTTACCAGATTTCTAGTCCGATTGCGATGGTCGGCGCCGGCGCCGGAAACCTAGCAACCGATAAGGATGCTTTGGAGCTGGAGAAGGAAATGTGGGATAAGTTTTACGGTACTGGGTTCTGGAGGAGCCCATCTCAACGAAGTGAAATGTAACG : GCTTGGGATGAATTAATGTGTATAGGTGGTTGAATGAAGAAGAGGGAGAAGTTGTTCTATTTTTTTTAAAAAAAAATCTTGTAAACTCTCTTTGTAATTAAAAACTCTTGTATCCACCAAGCAATCCTTGTATTATATTCTTCAATTTCTTTGTCATATTTTCATTTCAAGAATCGAAATCAA</gDNA_template>
            <first_frame> L  I  L  Q  L  F  R  R  G  V  I  Y  F  H  F  E  D  L  I  N  L  L  P  P  L  R  K  Y  H  H  P  Y  E  I  E  F  F  R  K  K  L  K  L  K  I  F  L  K  K  L  I  K  I  R  A  *  R  D  Q  *  S  Y  L  R  L  R  Y  C  L  W  I  N  G  S  R  Y  Y  R  V  T  I  H  R  A  A  S  Y  A  V  A  A  A  A  A  A  V  G  V  L  F  G  D  R  D  *  R  R  S  P  A  V  R  R  R  N  V  R  R  W  R  V  V  V  L  A  G  *  R  I  C  W  F  *  R  C  I  R  F  R  L  D  F  V  E  R  L  *  G  K  I  A  G  I  G  *  *  K  R  G  F  C  R  R  R  E  V  D  I  V  A  V  M  K  W  S  F  M  L  T  R  F  L  V  R  L  R  W  S  A  P  A  P  E  T  *  Q  P  I  R  M  L  W  S  W  R  R  K  C  G  I  S  F  T  V  L  G  S  G  G  A  H  L  N  E  V  K  C  N   : G  L  G  *  I  N  V  Y  R  W  L  N  E  E  E  G  E  V  V  L  F  F  L  K  K  N  L  V  N  S  L  C  N  *  K  L  L  Y  P  P  S  N  P  C  I  I  F  F  N  F  F  V  I  F  S  F  Q  E  S  K  S  </first_frame>
            <second_frame>  *  F  S  S  F  F  G  E  G  *  F  I  S  I  L  K  I  *  *  I  F  F  P  H  S  E  N  I  I  I  L  M  K  S  N  F  F  E  K  N  *  N  *  K  F  F  *  K  N  *  L  K  L  G  H  D  E  T  N  N  H  T  F  A  S  V  T  V  S  G  *  T  A  A  A  I  I  E  *  R  F  I  A  R  R  R  T  R  *  Q  Q  Q  Q  R  R  W  E  C  C  S  E  I  A  I  S  G  G  R  R  R  Y  D  G  G  M  C  G  G  G  V  L  L  S  L  R  D  S  E  F  V  G  S  S  G  V  *  G  S  G  W  T  L  *  K  G  F  E  E  K  S  P  G  S  V  D  E  K  G  A  F  A  G  D  G  K  W  T  L  *  L  *  *  N  G  A  S  C  L  P  D  F  *  S  D  C  D  G  R  R  R  R  R  K  P  S  N  R  *  G  C  F  G  A  G  E  G  N  V  G  *  V  L  R  Y  W  V  L  E  E  P  I  S  T  K  *  N  V  T  :  A  W  D  E  L  M  C  I  G  G  *  M  K  K  R  E  K  L  F  Y  F  F  *  K  K  I  L  *  T  L  F  V  I  K  N  S  C  I  H  Q  A  I  L  V  L  Y  S  S  I  S  L  S  Y  F  H  F  K  N  R  N  Q </second_frame>
            <third_frame>   N  S  P  A  F  S  E  R  G  N  L  F  P  F  *  R  S  N  K  S  S  S  P  T  P  K  I  S  S  S  L  *  N  R  I  F  S  K  K  I  K  I  K  N  F  F  K  K  I  N  *  N  *  G  M  T  R  P  I  I  I  P  S  P  P  L  L  S  L  D  K  R  Q  P  L  L  S  S  N  D  S  S  R  G  V  V  R  G  S  S  S  S  S  G  G  G  S  V  V  R  R  S  R  L  A  E  V  A  G  G  T  T  A  E  C  A  A  V  A  C  C  C  P  C  G  I  A  N  L  L  V  L  A  V  Y  K  V  P  A  G  L  C  R  K  A  L  R  K  N  R  R  D  R  L  M  K  K  G  L  L  P  A  T  G  S  G  H  C  S  C  D  E  M  E  L  H  A  Y  Q  I  S  S  P  I  A  M  V  G  A  G  A  G  N  L  A  T  D  K  D  A  L  E  L  E  K  E  M  W  D  K  F  Y  G  T  G  F  W  R  S  P  S  Q  R  S  E  M  *  R :   L  G  M  N  *  C  V  *  V  V  E  *  R  R  G  R  S  C  S  I  F  F  K  K  K  S  C  K  L  S  L  *  L  K  T  L  V  S  T  K  Q  S  L  Y  Y  I  L  Q  F  L  C  H  I  F  I  S  R  I  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0021O12.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95038" stop="95559"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GMTRPIIIPSPPLLSLDKRQPLLSSNDSSRGVVRGSSSSSGGGSVVRRSRLAEVAGGTTAECAAVACCCPCGIANLLVLAVYKVPAGLCRKALRKNRRDRLMKKGLLPATGSGHCSCDEMELHAYQISSPIAMVGAGAGNLATDKDALELEKEMWDKFYGTGFWRSPSQRSEM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 114 chains have been computed
$ 
$ memory statistics:
$ 11376 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 1896 bytes was the average size of a spliced alignment
$ 10680 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2136 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 116 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:06:53
-->
