<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:01:31"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="17498" stop="16218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17235" g_stop="16518" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17235" e_stop="16518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>NNNNNNNNTTCGTTTCAAAAACACTTAAACTCTTGAAAATATGGGTACTGGGATCACTTCTCTGAACTTCATGACGAACCTGCAAGATGGACCGTCATAGACATAACAGACCGTCACAAGCTTCATAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGATCGTCACAATCACGACGGACCGTCATAAGTTCCATAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTGCGCATTCAGCTTTGGACAGATTTCATGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAAGAAAAAGTATTAATAATATCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGTGACGCACTATGACTCAATACATTATCTTTGTACAATAGTATCCATGTTTCATTCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAACTATGTGGGATCGGAACATGACACAGACTCCCCATGCACTAACACCTATCCTCTTCAATTTCTCACTAAGGTGCTAATAATTCCGATATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACATGATGATTTCAATTTGAGTATAAGGATTAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTG-TTCTAATACACTTCAACTCTTG-GAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="31738" stop="16544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17522" g_stop="17490" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.515"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17489" i_stop="17335" i_length="155">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.871" a_score="0.43"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17334" g_stop="16852" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="515" r_length="481" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17522" e_stop="17490"/>
          <exon e_start="17334" e_stop="16852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTAGGTCC-TCGTGAGCTTGAGGATGCTACATTTATTATTCTAGCTTAGTACATTAGATATAGCTAGTGGTTGCTGTCCCTAGCATTTCATTTTCAAACATTTGTTCAAGCTTGTGTAATAAGGCCGATTTGGCAAACTATTATTATTTTTATGATCCAATGTTTCATTGTTTAATCAATTGATAGTTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTTCAAAAACACTTAAACTCTTGAAAATATGGGTACTGGGATCACTTCTCTGAACTTCATGACGAACCTGCAAGATGGACCGTCATAGACATAACAGACCGTCACAAGCTTCATAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGATCGTCACAATCACGACGGACCGTCATAAGTTCCATAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTGCGCATTCAGCTTTGGACAGATTTCATGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAAGAAAAAGTATTAATAATATCGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGAGGTCCGTCATGGTCACGACGGACCGTCA...........................................................................................................................................................TGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCG-TTCCAAAACACTTTAACTCTTGGA-ATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354383" ref_strand="+" ref_description="SGN-E354383 [cTOS-17-A14]">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="32406" stop="31045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32107" g_stop="31345" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E354383" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32107" e_stop="31345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCGATGGAAAAAGTGAA-TCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGAGTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAAGTGCAATGGAAGAATCGACC-GTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGAAGAAAAATACCCACATTTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGATGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGGAGCAGTAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGAACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGG-GTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCT</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGC-AAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTT-GAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGCCCGTCGAAGGTGCATCGTTTCAGCATACTTAGAATTTCTGAATTTGGATA-TGAAAATCGACTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33348" stop="34660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33648" g_stop="34360" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33648" e_stop="34360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33348" stop="34543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33648" g_stop="34243" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33648" e_stop="34243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33348" stop="34473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33648" g_stop="34173" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33648" e_stop="34173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33419" stop="34698"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33719" g_stop="34398" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33719" e_stop="34398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTG</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33419" stop="34377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33719" g_stop="34077" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33719" e_stop="34077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33868" stop="35126"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34168" g_stop="34826" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34168" e_stop="34826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATTAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="35965" stop="33956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35665" g_stop="35493" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35492" i_stop="34748" i_length="745">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34747" g_stop="34220" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="35665" e_stop="35493"/>
          <exon e_start="34747" e_stop="34220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAATTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCATCAAAACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTGCTTACACTAGAGGACAGGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCCGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAGAAATTGTCCCAAACAGAGTTACAGACCCCCAATATCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAATGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAATGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTTTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAACTTTACATTGTGAATTACTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTGTATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTAATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTAAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33937" stop="35298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34237" g_stop="34998" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34237" e_stop="34998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATTAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="33937" stop="35197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34237" g_stop="34897" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34237" e_stop="34897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATTAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355026" ref_strand="+" ref_description="SGN-E355026 [cTOS-19-F16]">
      <seq>gaacacatccaaaaattctcaaactaccaaaactaattcaattgagggtacttggatagtgtcatccttgagatgtgccaagaaggatagacaacccttactaaccatcttctgagcacaaagaaaggagataatacgcaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaattgggagaaagccaagtcatacccagaattacatcaaagtcacccatttctaaagtaaccaaatctagataagtgttgctccccacgaaattcaccaaacaagacctatgtaccttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagtaattcacaatgcaattttagaccattagcaaatgatgaagatacatatgaaaacgtggagccagggtcaaataatacagatgccatgcaatcacaaaccaagagattacctgtgataacagcatcagacgcctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34164" stop="35306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34464" g_stop="35006" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E355026" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34464" e_stop="35006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGC</genome_strand>
        <mrna_strand>GAACACATCCAAAAATTCTCAAACTACCAAAACTAATTCAATTGAGGGTACTTGGATAGTGTCATCCTTGAGATGTGCCAAGAAGGATAGACAACCCTTACTAACCATCTTCTGAGCACAAAGAAAGGAGATAATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTGGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAGTCACCCATTTCTAAAGTAACCAAATCTAGATAAGTGTTGCTCCCCACGAAATTCACCAAACAAGACCTATGTACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGTAATTCACAATGCAATTTTAGACCATTAGCAAATGATGAAGATACATATGAAAACGTGGAGCCAGGGTCAAATAATACAGATGCCATGCAATCACAAACCAAGAGATTACCTGTGATAACAGCATCAGACGCCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34340" stop="35270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34640" g_stop="34970" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34640" e_stop="34970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34547" stop="35706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34847" g_stop="35406" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34847" e_stop="35406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTC-TGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34551" stop="35915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34851" g_stop="35615" g_length="765"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34851" e_stop="35615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTTTTGATGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTG-TGGACTGAAACATAATTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAG-TCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34631" stop="36020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34931" g_stop="35720" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34931" e_stop="35720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTTTTGATGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAATTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATC-CTTTTCCTATCCCTCAAAGTTCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTC-TGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34633" stop="35767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34933" g_stop="35467" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34933" e_stop="35467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTTTTGATGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTC-TGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="34707" stop="36004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35007" g_stop="35704" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35007" e_stop="35704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTTTTGATGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAATTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCAT-CCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTC-TGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="35269" stop="36586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35569" g_stop="36286" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35569" e_stop="36286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATTCGCTCTTGTGGACTGAAACATAATTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCAT-CCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAAC-AACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTACTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTTATTTTGCACTTGTTCATTTTCCCC-TTCCTCCCCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="35272" stop="36533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35572" g_stop="36233" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35572" e_stop="36233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGCTCTTGTGGACTGAAACATAATTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCAT-CCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAAC-AACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTACTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTTATTTTGCACTTGTTCATTTTCCCCTTCCTCCCCCTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="36590" stop="35437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36290" g_stop="35737" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36290" e_stop="35737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGGGAGGAAGGGGAAAATGAACAAGTGCAAAATAAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGTACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGTATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="35625" stop="36657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35925" g_stop="36357" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35925" e_stop="36357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTACTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTTATTTTGCACTTGTTCATTTTCCCCTTCCTCCCCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACTTCTTCCACGGCCTCTTGCCACTACTCCTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="37620" stop="36786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37321" g_stop="37086" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37321" e_stop="37086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTT-TCTTCTTTGTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTC-TTGTTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="38106" stop="36877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37806" g_stop="37696" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37695" i_stop="37585" i_length="111">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37584" g_stop="37177" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="515" r_length="404" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37806" e_stop="37696"/>
          <exon e_start="37584" e_stop="37177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGACGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCAACGTTCCGGTACAAGGATAGAATATGGATCAGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATCGATCGGGTGCCACGTTCCGGTACAAGGATAAAATATTGATCGGGTGTCACGTTGCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCAGGTGTCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCCAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGG...............................................................................................................ATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGG-GTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E731946" ref_strand="+" ref_description="SGN-E731946 [LA28CF02]">
      <seq>cggttttccgaccttggcgtatgcctatgcgtggctcccatgccccttggggtcgtagagtgccatatagtcgttctatccgagggactagagttagtacgcgtatgcctcccgtagttagtcgtggtttcaaacgacctacagcattgagagatagacatgcagagatggctttgtctcctaggggcagatccatggcttcaccacccaggaggtcatatgactggagaccacctgtttcctcatatccaaagagtaacttcaagagggactatggacggcgcgaggaaatctctccttctagaagcagagcaatacctgagtatccttcgagggttcattctgacagacgtatatcctatagggatgagtattcttcgcgtggctctggttaccctgaattacctagaggtactcactctgcagcaaggagatcttatgtcgatgatggatatgggcaacggtttgaaagaccccctccatcttcgcgtgagggacgtggtcgtgaatatgattctgtctctggttcgaaacgtccatacatggcagtggatgatgttcatccacactacgctatggcaggagtgcggcattcgcgtgctcgtttggattatgaactaggcagtgcaagtggctcccattatggagatgcatatggtgacagtagactcgggagatcaaatcttggatatggcggcaacaggagctccatttctaggcaagattctcatgggatatacagcagtcgtcagggtatggactatggtggaggttcctatggtggaagtgatgtaggtggattgtattcgtccagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="43020" stop="41251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42725" g_stop="42489" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42488" i_stop="42400" i_length="89">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42399" g_stop="42086" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="551" r_length="314" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42085" i_stop="41995" i_length="91">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41994" g_stop="41882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="664" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41881" i_stop="41791" i_length="91">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41790" g_stop="41684" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="771" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41683" i_stop="41596" i_length="88">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41595" g_stop="41551" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="816" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E731946" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42725" e_stop="42489"/>
          <exon e_start="42399" e_stop="42086"/>
          <exon e_start="41994" e_stop="41882"/>
          <exon e_start="41790" e_stop="41684"/>
          <exon e_start="41595" e_stop="41551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGTTCCGACCTTGGCGTATGCCTATGCATGGTTCCCATGCCCCTTGGGGTCGTACAGTGCCATATAGTCGTTCTATCCGAGGGACTAGAGTTAGTACGCGTATGCCTCCCGTAGTTAGTCGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTGGTATGATGTGATTCTGTCTTCTGTTATAATCTTCTGGTTCCACTCTACTTATTTTATAAATGACCAGATGATTAATGACCAAATTGCAGTTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTGGTGAGTTATCTTCACCATATACTATGCTTAGATATTTTCCTTATTTGCCCTAGAAGATATGAACTAATTAAGCGTCTCCTGTACATGCCAGGATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAGGTGCCTTCTAATTATTGTTCAGTCATTTTTTTTCTTCCTTTTTCGCAATCTTTGGTATTATATTGATTGACTTGACTGATTTACATATTAGTAGACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGACTATGGTGGAGGTATGTTTCGTTCCTTGTAAAATCTTGTTATATCTCTTAACATTTGTTTGTATAGAGAAATCTGTCTATATTCTGTTTTGGTTTGTAGGTTCCTATGGTGGAAGTGATGTAGGTGGATTGTATTCGTCCAGCT</genome_strand>
        <mrna_strand>CGGTTTTCCGACCTTGGCGTATGCCTATGCGTGGCTCCCATGCCCCTTGGGGTCGTAGAGTGCCATATAGTCGTTCTATCCGAGGGACTAGAGTTAGTACGCGTATGCCTCCCGTAGTTAGTCGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACTGGAGACCACCTG.........................................................................................TTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTCGCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTG...........................................................................................GATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAG...........................................................................................TAGACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGACTATGGTGGAG........................................................................................GTTCCTATGGTGGAAGTGATGTAGGTGGATTGTATTCGTCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E477641" ref_strand="+" ref_description="SGN-E477641 [cSTD-1-C8]">
      <seq>cgtggtttcaaacgacctgcagcattgagagatagacatgcagagatggctttgtctcctaggggaagatccatggcttcaccacccaggaggtcatatgaccggagaccacctgtttcctcatatccaaagagtaacttcaagagggagtatggacggcgcgaggaaatctctccttctagaagcagagcaatagctgagtatccttcgagggttcattctgacagacgtatatcctatagggatgaatattcttcgcgtggctctggttaccctgaattacctagaggtactcactctgcagcaaggagagcttatgttgatgatggatatgggcaacggtttgaaagaccccctccatcttaccgtgagggacgtggtcgtgaatatgattctgtctctggttcgaaacgtccatacactgcagtggatgatgttcatccacactacgctgaggcaggaatgcggcattcgcgtgctcgtttggattatgaattaggcagtggaagtggctcccattatggagatgcatatggtgacagactcgggagatcaaatcttggatatggcggcaacaggagctccatttctaggcaagattctcatgggatatacagcagtcgtcagggtatgggctatggtgggaggttcctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="42903" stop="41382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42603" g_stop="42489" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42488" i_stop="42400" i_length="89">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42399" g_stop="42086" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="429" r_length="314" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42085" i_stop="41995" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41994" g_stop="41882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="542" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41881" i_stop="41788" i_length="94">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41787" g_stop="41684" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="647" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41683" i_stop="41596" i_length="88">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41595" g_stop="41588" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="655" r_length="8" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E477641" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42603" e_stop="42489"/>
          <exon e_start="42399" e_stop="42086"/>
          <exon e_start="41994" e_stop="41882"/>
          <exon e_start="41787" e_stop="41684"/>
          <exon e_start="41595" e_stop="41588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTGGTATGATGTGATTCTGTCTTCTGTTATAATCTTCTGGTTCCACTCTACTTATTTTATAAATGACCAGATGATTAATGACCAAATTGCAGTTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTGGTGAGTTATCTTCACCATATACTATGCTTAGATATTTTCCTTATTTGCCCTAGAAGATATGAACTAATTAAGCGTCTCCTGTACATGCCAGGATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAGGTGCCTTCTAATTATTGTTCAGTCATTTTTTTTCTTCCTTTTTCGCAATCTTTGGTATTATATTGATTGACTTGACTGATTTACATATTAGTAGACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGACTATGGT-GGAGGTATGTTTCGTTCCTTGTAAAATCTTGTTATATCTCTTAACATTTGTTTGTATAGAGAAATCTGTCTATATTCTGTTTTGGTTTGTAGGTTCCTAT</genome_strand>
        <mrna_strand>CGTGGTTTCAAACGACCTGCAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGAAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTG.........................................................................................TTTCCTCATATCCAAAGAGTAACTTCAAGAGGGAGTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATAGCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAATATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGAGCTTATGTTGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACACTGCAGTG...........................................................................................GATGATGTTCATCCACACTACGCTGAGGCAGGAATGCGGCATTCGCGTGCTCGTTTGGATTATGAATTAGGCAGTGGAAGTGGCTCCCATTATGGAGATGCATATGGTGACAG..............................................................................................ACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGGCTATGGTGGGAG........................................................................................GTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427752" ref_strand="+" ref_description="SGN-E427752 [STM-49-E13]">
      <seq>cgtggtttcaaacgacctgcagcattgagagatagacatgcagagatggctttgtctcctaggggaagatccatggcttcaccacccaggaggtcatatgaccggagaccacctgtttcctcatatccaaagagtaacttcaagagggagtatggacggcgcgaggaaatctctccttctagaagcagagcaatagctgagtatccttcgagggttcattctgacagacgtatatcctatagggatgaatattcttcgcgtggctctggttaccctgaattacctagaggtactcactctgcagcaaggagagcttatgttgatgatggatatgggcaacggtttgaaagaccccctccatcttaccgtgagggacgtggtcgtgaatatgattctgtctctggttcgaaacgtccatacactgcagtggatgatgttcatccacactacgctgaggcaggaatgcggcattcgcgtgctcgtttggattatgaattaggcagtggaagtggctcccattatggagatgcatatggtgacagactcgggagatcaaatcttggatatggcggcaacaggagctccatttctaggcaagattctcatgggatatacagcagtcgtcagggtatgggcttatggtggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="42903" stop="41384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42603" g_stop="42489" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42488" i_stop="42400" i_length="89">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42399" g_stop="42086" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="429" r_length="314" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42085" i_stop="41995" i_length="91">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.986" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41994" g_stop="41882" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="542" r_length="113" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41881" i_stop="41788" i_length="94">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.907" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41787" g_stop="41684" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="647" r_length="105" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E427752" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42603" e_stop="42489"/>
          <exon e_start="42399" e_stop="42086"/>
          <exon e_start="41994" e_stop="41882"/>
          <exon e_start="41787" e_stop="41684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTGGTATGATGTGATTCTGTCTTCTGTTATAATCTTCTGGTTCCACTCTACTTATTTTATAAATGACCAGATGATTAATGACCAAATTGCAGTTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTGGTGAGTTATCTTCACCATATACTATGCTTAGATATTTTCCTTATTTGCCCTAGAAGATATGAACTAATTAAGCGTCTCCTGTACATGCCAGGATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAGGTGCCTTCTAATTATTGTTCAGTCATTTTTTTTCTTCCTTTTTCGCAATCTTTGGTATTATATTGATTGACTTGACTGATTTACATATTAGTAGACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGAC-TATGGTGGAG</genome_strand>
        <mrna_strand>CGTGGTTTCAAACGACCTGCAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGAAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTG.........................................................................................TTTCCTCATATCCAAAGAGTAACTTCAAGAGGGAGTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATAGCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAATATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGAGCTTATGTTGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACACTGCAGTG...........................................................................................GATGATGTTCATCCACACTACGCTGAGGCAGGAATGCGGCATTCGCGTGCTCGTTTGGATTATGAATTAGGCAGTGGAAGTGGCTCCCATTATGGAGATGCATATGGTGACAG..............................................................................................ACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGGCTTATGGTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E480010" ref_strand="+" ref_description="SGN-E480010 [cSTD-12-O17]">
      <seq>ttcttaaagatatgggaagattgaaaaagttgagcttgccagaaatatgccttcagccaagagaaaggacttcggatttgtcaccttcgacacccatgaggctgcagttacttgtgctaaaagtattaataatgaggaattgggtgaaggagataacaaggttaaagttagggccagattatcaagaccccttgagaggggcagagggaaatatggtggacgaggagatttgcgaccttggcgtatgtccatgcatggtccccgtgccccttggggtcgtatagtgccacatagtcatgctattcgagggactagagttagtacacgcatgcctcctgtagttggtcgtggtttcaaacgacctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="43325" stop="42284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43025" g_stop="42865" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42864" i_stop="42790" i_length="75">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42789" g_stop="42584" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="366" r_length="206" r_score="0.883"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E480010" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43025" e_stop="42865"/>
          <exon e_start="42789" e_stop="42584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTAAAGAATATGGAAAGATAAGAAAAGTTGAGCTTGCCAGAAATAGGCCTTCAGCCAAGAGAAAGGACTTTGGATTTGTCACCTTTGACACTCATGAGGCTGCAGTTACATGTGCTAAAAGCATTAATAATGAGGAATTTGGTGAAGGAGATAACAAGGTTCGTTCTCTGTATCTAAGTGTCCCCCAATATATGTGAATCTTTGTGAGTTGTTCTTATTGTTGTATATTTCAGGTTAAAGTAAGGGCCAGACTATCGAGACCCCTGCATATGGGTAGAGGGAAATATGGTGGACGAGGAGAGTTCCGACCTTGGCGTATGCCTATGCATGGTTCCCATGCCCCTTGGGGTCGTACAGTGCCATATAGTCGTTCTATCCGAGGGACTAGAGTTAGTACGCGTATGCCTCCCGTAGTTAGTCGTGGTTTCAAACGACCTAC</genome_strand>
        <mrna_strand>TTCTTAAAG-ATATGGGAAGATTGAAAAAGTTGAGCTTGCCAGAAATATGCCTTCAGCCAAGAGAAAGGACTTCGGATTTGTCACCTTCGACACCCATGAGGCTGCAGTTACTTGTGCTAAAAGTATTAATAATGAGGAATTGGGTGAAGGAGATAACAAG...........................................................................GTTAAAGTTAGGGCCAGATTATCAAGACCCCTTGAGAGGGGCAGAGGGAAATATGGTGGACGAGGAGATTTGCGACCTTGGCGTATGTCCATGCATGGTCCCCGTGCCCCTTGGGGTCGTATAGTGCCACATAGTCATGCTATTCGAGGGACTAGAGTTAGTACACGCATGCCTCCTGTAGTTGGTCGTGGTTTCAAACGACCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365794" ref_strand="+" ref_description="SGN-E365794 [cLPT-8-K15]">
      <seq>cgaggcttgaaactatgccttcaaaatcagtgagaaagacggcttcaggttctggatccaaaagaggtggccgtacacctcgtggtacgccaaagtctcaggcaaagcctgttaaggtagaggaaccaatggaagtacaggacaaagataaggcggtggaggaggtatctgaagaaaagcctgagcttaaaatcatgcaatcggagcctgaggaaccggctgaaactgcattgaatgtgaatgctgtgggaaagggggcggtttcagagaagagttaaaacagtgtttattgatggtcttgctgtatcctggaacgaggaccatgtgcgggagcttcttaaagaatatggaaaaataagaaaagttgagcttgccagaaataggccttcagccaagagaaaggactttggatttgtcacctttgacactcatgaggctgcagttacatgtgctaaaagcattaataatgaggaattgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="48032" stop="42580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47732" g_stop="47460" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47459" i_stop="43087" i_length="4373">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43086" g_stop="42880" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="480" r_length="207" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E365794" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47732" e_stop="47460"/>
          <exon e_start="43086" e_stop="42880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGAGTAAGTATTCATTTTGCAAAATTGGTATTTTCTTGAATTAATACTTTGTACAGTGTTGCTTATGTCAATTTTGATAAGAGTAGTGATAAGAAAAAAGATTAACTTTATAGGTCATGTTAGTTGTTAATGGTATTGCAAGAGCTATGCAAATTGTGTTTATGCATTAATACCTGTTCTCTTTAAACACAATTTATTGAATTAATACCTCCCATGTTGCTTAAACTCTTCAAAATATCCTGTCTGGGAGAATCCGACACGTGTGCAGATTCAAAAGAATCCAAACAACTTAGATTAATACCTGTTCAATTATTCACGTAACTGCTGACAATTGCTATGTTAATTGTTATATAATTTCAGTTCTTTAGCTTAATTAAGAGCAATGTCAGAAAATACTTATGGGTCCAAATAGAGATGGAATTTCAGAGAACGGCTTATAACATATCCCTCCCTTGTGGTTTCAAATAAGACATATACCTCCCTTCTTTCATAATACGTGTAACAAAACTATTTATCATCTGAAATGGATAAGTTTACCCCTTTTACGTCAACTTTTAGTTTCTTTCTTGTTCTTTTTCCCAGAATGTAAATATTAAAGCAAAATCACAATATTAGTTTGACAAGATAGATGATAGATGGAAGTTACGGAATGTTAGTACAATGTTACCGGTTTGTCTTTTGTTACACTTCTTCATGTATATATATTGCTGCATGACAAATTAAATACTCCCTCCGTATAAATACTTTTTATGATCTTTTTACTTTTTTGGCTACACATTAATTTCAACTTTTCACGTGGCATGTTTAAAGCTACAAGATTAAAGGAAATTTTTGTACTTTTGACATAACTATTATTTAGGATCACCAAATTGAAAAGTCTTTTTTGTAAACTCTGCATCAAGTCAAACTATGTCATTCTTTTTGAAATTGAGGGAGTAACTTTTAAAATTTTAATGTGAACTTAAATCAATTTGAACTATTATTGAGTATTCTATGGATGAAAAACACTATATTTCATTTGATGTTTCTTTTACCCAATCACGGGAAGGAAACAGAAAAAGGTTTTGATAACATTACATAGAGAAAAAAAGTATAATTGTCTTATTATTTCCTCTTCCGTTATCGTCTTAAAAGCAAAACAATGTTCTCTTGCAATATTGAAAAGTCACACTGCAATATCATGAGTTTGACTTCAATATCTTTACTCTAGCTGATCATTTAGTGCTTCATCAATTAGATTTTAGATTATCAATTATAAAATTAAATATGATCAATCATCCGTATTGAAGTTATTTTGAAGGATAAAATAAACCCGAATAAAATAAGGTACTTATTATAAAAGAAGACATAAAACTTTGACATAGAAAGGGTAAGTTTGTCTACTTCAGAATATAAAATACTTTTGCTACACACATTGGTCAAAGAAGGGAAGTATATGTAATATTTGATACCACAAGGGAGGGATGTGTTATAAAACAATTACTTAGATTGTTCAGTGAGATAAGCAGACTTGATTTCGTTCCGAAATGTCCGAGTTTTAGATTTTGAAGATCAATAAAATAAAAGCTTTTAGATTTTGAAGATCAATAATATAAGAGGAAGGAGTGATAAAATAAATACGAATAGAAAAGGAAAGGGAGGAAATGCAAAAAAATTAGAAGAGAAAAATCATACAAATCACTGCACCCTTTTTTGCATCCCTTAAATGAATTTCAGTTGATTAGGACGAGTTTGTTAAAAACTATGCTGAACAGTTTCTGTAGGTTGAACTTGGCCAAACCCTCAAGGGAGGTCTCTGAAATTATTCCTTAAAAATATTATCTCTAGAGAACGAGTTATGATAGGATACTTATAATAATATCTTTGTTGGTGAGGGCGAGCTGTGAGCATCACTTAAATCTTATGGTCTGCTAACGTTAAGTTAATTAAATATATGTGTGTGTATGCGGTTTCAAGCTTCAATCGATTAAGAAACATATAGAAAGTTAGGCATCTCCAAGATGATGGTTGAGGCATATGCCTTTACATCGAGACAGCTCACATGTTGGTCTCAAGACAACCTTTGTGGGTAAAACACTCAAAATAATGACAAAAGGTGAGGCTTAACTGGGATGGATGAAGGGTCCCTTATTCTTCAATTTGAGATGAAGGAAGAAGGAAAGCTTACAGTTGCTGGCACATATTCTGTTCTGCCAAATCTTGTAACTTTAATCTCTCTCCTGATGATCAGTTAAGTCTCTATGGAGTTGGACATTGTTGACAGCTTACACAACTTGCAAGAGATTATGTTATTCTTGGATAAGAACATTTATTTTCACCATTTACTGGGAGGTTAATTTTTTTCTCATGGCAGAGAAGGACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTGGTATTTTCTTTATTTTATAGTTTTTATGTGACTGATTTTAATTCCTCATAGAAGGTATTTCCTGATGATGGAATTTCCAGATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCTGTAAGTAGGCTAGGCATATCATATTGTCAACATACATGATTCTCAGTTTTGAGGAGCTGCTTAACTAGTCATTGATGTTTGCTTTACTCTCCCAGTTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCCTGGGGATGAAATCATGTCACAGGTAAACTCTCTGAACCTATATCTATGTTTTAATAGAAGGGAAAATGGTTCTGGTTAAGTATAGTTATAGTATATTGCCAAATGAAGGCTTTTGCTTTGGTGCTCGTCAGCTTATCTGGAGGTAACCAAATATTTCACAGTTGACTTCAGAGTTATATTATGTTCTTCAACATAATCAGTGATTTGCTTTTTATCCCTGCTTACGTTGTCCTTTAATTCTTTGCTTTTTATCCCTACTGCAAAGAAAAGAAGAATGAGGACAGTATGTATTTTAGTTTTTCCTTTTTCAATCAGTTAGATTTATGGATAGGTGCTAGCTGTTCAAATTTTGTCTCTCCCCTTTAATTAATTTTTGGTCTGGCTAGTTCGGTTATTTTCTTTCTGTGGTTGTTCTTTTCTGATGTCTTTGCTGCTTGCTTTTGGAGTCTTTTTGGTCAATTGCTAGACAACCCTTTTTTATTTGACTGTGGATGAGGTGTGAGAGGTTGGCCATGGTGGGGTGGTATGAAGAGAGTCAAAGGTAGGCCAACAAGAATCAGGGAGAAGTGATTAGACAGAACATGATACACATGTTAGTATGGAGGTCAGGGATTAGGGGTGAAGGTTAGGTAGTACAGCATTTAGTTTTTCCTTGTAGTATTACTTTCTATTATTTTATTCTGCCATTTTTTACTGCATCTGTTGTTTTTCATGGCTTCAGTTTGTGTTGTTTGCTGTTACTATTTTTTCTCTATTATTTTTATCATGGTTTCTTCACCACTGTATTTCCTTTCTATAACTGCTTAGAACAGTTGTACTTGAGCGAGGCTTTTGGAAATAACCTCTCTGCCTTCACAAGGCAGGGGTAAGGTCTTCATACACGCCATGCTCCTCAGACCCCACTTGTGGCTGTGGGATTACCCTGGGTATTTTTTTTGTGTTTCTTTGTTTCTTGATCAATCAAGACATGACTGTGGGGGAGTATTTCTTGAGTTCAGGTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCCTGGAACGAGGACCATGTGCGGGAGCTTCTTAAAGAATATGGAAAGATAAGAAAAGTTGAGCTTGCCAGAAATAGGCCTTCAGCCAAGAGAAAGGACTTTGGATTTGTCACCTTTGACACTCATGAGGCTGCAGTTACATGTGCTAAAAGCATTAATAATGAGGAATTTGGT</genome_strand>
        <mrna_strand>CGAGGCTTGAAACTATGCCTTCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGCCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCATGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCCTGGAACGAGGACCATGTGCGGGAGCTTCTTAAAGAATATGGAAAAATAAGAAAAGTTGAGCTTGCCAGAAATAGGCCTTCAGCCAAGAGAAAGGACTTTGGATTTGTCACCTTTGACACTCATGAGGCTGCAGTTACATGTGCTAAAAGCATTAATAATGAGGAATTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738479" ref_strand="+" ref_description="SGN-E738479 [LC13DC02]">
      <seq>cggttataggaccctgaatatgaacctgaagagtatggcacacttgattatgatgagaatgggattgaacacgacggtgttcaggaagagggaaatgaaatagaggaagaacctgaagaggcagatgttggtgaagaggaagagggtgacatggcggaagaggatgttgaagatgttcatgaggaaaatgagggtgatgaagaagatgagcatgctgagatggctgatgcagcagaggaggaagaacatcatgaagttgttgacgaaaggcgtaagcggaaggaatttgaaatatttgttggtggccttgacaaggatgctaccgaggaggatctcagaaaggtcttcagtaaagttggcgagattactgaagtgaggcttctgatgaattctcagacaaagaaaaataaaggatttgcattcctgcgatttgccactgttgaacaagcaaaaagagcttgtactgagctgaaaaccccagtgatcaatggaaaacagtgtggtgtctctccaagtcaagacaatgatactctgtttttgggtaacatatgcaagacctggacaaaagaagctttaaaagagaagctgaagcattatggtgttcacaatatagaggatttgacgttggtcgaagacactaataatgagggaatgaatcgaggatttgctttcttggagttctcttcacgttcagaggccatggatgcttttaagcggttacagaagagagatattgtatttggagttgataggcccgcaaaggtttcttttgaggattcattcattgatcctggggatgaaatcatgtcacaggttaaaacagtgtttattgatggtcttgctgtatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="45348" stop="42751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45051" g_stop="44568" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44567" i_stop="44488" i_length="80">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44487" g_stop="44398" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="573" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44397" i_stop="44303" i_length="95">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.268" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44302" g_stop="44063" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="813" r_length="240" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44062" i_stop="43087" i_length="976">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43086" g_stop="43051" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="814" r_stop="849" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E738479" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45051" e_stop="44568"/>
          <exon e_start="44487" e_stop="44398"/>
          <exon e_start="44302" e_stop="44063"/>
          <exon e_start="43086" e_stop="43051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTGGTATTTTCTTTATTTTATAGTTTTTATGTGACTGATTTTAATTCCTCATAGAAGGTATTTCCTGATGATGGAATTTCCAGATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCTGTAAGTAGGCTAGGCATATCATATTGTCAACATACATGATTCTCAGTTTTGAGGAGCTGCTTAACTAGTCATTGATGTTTGCTTTACTCTCCCAGTTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCCTGGGGATGAAATCATGTCACAGGTAAACTCTCTGAACCTATATCTATGTTTTAATAGAAGGGAAAATGGTTCTGGTTAAGTATAGTTATAGTATATTGCCAAATGAAGGCTTTTGCTTTGGTGCTCGTCAGCTTATCTGGAGGTAACCAAATATTTCACAGTTGACTTCAGAGTTATATTATGTTCTTCAACATAATCAGTGATTTGCTTTTTATCCCTGCTTACGTTGTCCTTTAATTCTTTGCTTTTTATCCCTACTGCAAAGAAAAGAAGAATGAGGACAGTATGTATTTTAGTTTTTCCTTTTTCAATCAGTTAGATTTATGGATAGGTGCTAGCTGTTCAAATTTTGTCTCTCCCCTTTAATTAATTTTTGGTCTGGCTAGTTCGGTTATTTTCTTTCTGTGGTTGTTCTTTTCTGATGTCTTTGCTGCTTGCTTTTGGAGTCTTTTTGGTCAATTGCTAGACAACCCTTTTTTATTTGACTGTGGATGAGGTGTGAGAGGTTGGCCATGGTGGGGTGGTATGAAGAGAGTCAAAGGTAGGCCAACAAGAATCAGGGAGAAGTGATTAGACAGAACATGATACACATGTTAGTATGGAGGTCAGGGATTAGGGGTGAAGGTTAGGTAGTACAGCATTTAGTTTTTCCTTGTAGTATTACTTTCTATTATTTTATTCTGCCATTTTTTACTGCATCTGTTGTTTTTCATGGCTTCAGTTTGTGTTGTTTGCTGTTACTATTTTTTCTCTATTATTTTTATCATGGTTTCTTCACCACTGTATTTCCTTTCTATAACTGCTTAGAACAGTTGTACTTGAGCGAGGCTTTTGGAAATAACCTCTCTGCCTTCACAAGGCAGGGGTAAGGTCTTCATACACGCCATGCTCCTCAGACCCCACTTGTGGCTGTGGGATTACCCTGGGTATTTTTTTTGTGTTTCTTTGTTTCTTGATCAATCAAGACATGACTGTGGGGGAGTATTTCTTGAGTTCAGGTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCC</genome_strand>
        <mrna_strand>CGGTTATA-GGACCCTGAATATGAACCTGAAGAGTATGGCACACTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTG................................................................................ATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCT...............................................................................................TTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCCTGGGGATGAAATCATGTCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E738452" ref_strand="+" ref_description="SGN-E738452 [LC13CG12]">
      <seq>cggttataggaccctgaatatgaacctgaagagtatggcacagttgattatgatgagaatgggattgaacacgacggtgttcaggaagagggaaatgaaatagaggaagaacctgaagaggcagatgttggtgaagaggaagagggtgacatggcggaagaggatgttgaagatgttcatgaggaaaatgagggtgatgaagaagatgagcatgctgagatggctgatgcagcagaggaggaagaacatcatgaagttgttgacgaaaggcgtaagcggaaggaatttgaaatatttgttggtggccttgacaaggatgctaccgaggaggatctcagaaaggtcttcagtaaagttggcgagattactgaagtgaggcttctgatgaattctcagacaaagaaaaataaaggatttgcattcctgcgatttgccactgttgaacaagcaaaaagagcttgtactgagctgaaaaccccagtgatcaatggaaaacagtgtggtgtctctccaagtcaagacaatgatactctgtttttgggtaacatatgcaagacctggacaaaagaagctttaaaagagaagctgaagcattatggtgttcacaatatagaggatttgacgttggtcgaagacactaataatgagggaatgaatcgaggatttgctttcttggagttctcttcacgttcagaggccatggatgcttttaagcggttacagaagagagatattgtatttggagttgataggcccgcaaaggtttcttttgaggattcattcattgatccttggggatgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="45348" stop="43774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45051" g_stop="44568" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44567" i_stop="44488" i_length="80">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44487" g_stop="44398" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="573" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44397" i_stop="44303" i_length="95">
            <donor d_prob="0.823" d_score="1.00"/>
            <acceptor a_prob="0.268" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44302" g_stop="44072" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="805" r_length="232" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E738452" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45051" e_stop="44568"/>
          <exon e_start="44487" e_stop="44398"/>
          <exon e_start="44302" e_stop="44072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTGGTATTTTCTTTATTTTATAGTTTTTATGTGACTGATTTTAATTCCTCATAGAAGGTATTTCCTGATGATGGAATTTCCAGATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCTGTAAGTAGGCTAGGCATATCATATTGTCAACATACATGATTCTCAGTTTTGAGGAGCTGCTTAACTAGTCATTGATGTTTGCTTTACTCTCCCAGTTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCC-TGGGGATGAAATC</genome_strand>
        <mrna_strand>CGGTTATA-GGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTG................................................................................ATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCT...............................................................................................TTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCCTTGGGGATGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271196" ref_strand="+" ref_description="SGN-E271196 [cLEM-5-M11]">
      <seq>acaatttgaaagaatcagtcgatcactatgaaaagggggagcgattagatttgggggataatgaccctgaatatgaacctgaagagtatggcacagttgattatgatgagaatgggattgaacacgacggtgttcaggaagagggaaatgaaatagaggaagaacctgaagaggcagatgttggtgaagaggaagagggtgacatggcggaagaggatgttgaagatgttcatgaggaaaatgagggtgatgaagaagatgagcatgctgagatggctgatgcagcagaggaggaagaacatcatgaagttgttgacgaaaggcgtaagcggaaggaatttgaaatatttgttggtggccttgacaaggatgctaccgaggaggatctcagaaaggtcttcagtaaagttggcgagattactgaagtgaggcttctgatgaattctcagacaaagaaaaataaaggatttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="45403" stop="44331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45103" g_stop="44631" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E271196" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45103" e_stop="44631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCA</genome_strand>
        <mrna_strand>ACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E322085" ref_strand="+" ref_description="SGN-E322085 [cTOB-29-J17]">
      <seq>agaaaaatagagtatttatttgttcttgttgtgttttttcattcatctcgaaaacattggtttatcaattcttgaaactatgcctccaaaatcagtgagaaagacggcttcaggttctggatccaaaagaggtggccgtacacctcgtggtacgccaaagtctcaggcaaagtctgttaaggtagaggaaccaatggaagtacaggacaaagataaggcggtggaggaggtatctgaagaaaagcctgagcttaaaatcacgcaatcggagcctgaggaaccggctgaaactgcattgaatgtgaatgctgtgggaaagggggcggtttcagagaagaagaaggacaatttgaaagaatcagtcgatcactatgaaaagggggagcgattagatttgggggataatgaccctgaatatgaacctgaagagtatggcacagttgattatgatgagaatgggattgaacacgacggtgttcaggaagagggaaatgatatagaggaagaacctgaagaggcagatgttggtgaaaaggaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="48097" stop="44607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47797" g_stop="47460" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47459" i_stop="45110" i_length="2350">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45109" g_stop="44907" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="541" r_length="203" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E322085" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47797" e_stop="47460"/>
          <exon e_start="45109" e_stop="44907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAATAGAGTATTTATTTGTTCTTGTTGTGTTTTTTCATTCATCTCGAAAACATTGGTTTATCAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGAGTAAGTATTCATTTTGCAAAATTGGTATTTTCTTGAATTAATACTTTGTACAGTGTTGCTTATGTCAATTTTGATAAGAGTAGTGATAAGAAAAAAGATTAACTTTATAGGTCATGTTAGTTGTTAATGGTATTGCAAGAGCTATGCAAATTGTGTTTATGCATTAATACCTGTTCTCTTTAAACACAATTTATTGAATTAATACCTCCCATGTTGCTTAAACTCTTCAAAATATCCTGTCTGGGAGAATCCGACACGTGTGCAGATTCAAAAGAATCCAAACAACTTAGATTAATACCTGTTCAATTATTCACGTAACTGCTGACAATTGCTATGTTAATTGTTATATAATTTCAGTTCTTTAGCTTAATTAAGAGCAATGTCAGAAAATACTTATGGGTCCAAATAGAGATGGAATTTCAGAGAACGGCTTATAACATATCCCTCCCTTGTGGTTTCAAATAAGACATATACCTCCCTTCTTTCATAATACGTGTAACAAAACTATTTATCATCTGAAATGGATAAGTTTACCCCTTTTACGTCAACTTTTAGTTTCTTTCTTGTTCTTTTTCCCAGAATGTAAATATTAAAGCAAAATCACAATATTAGTTTGACAAGATAGATGATAGATGGAAGTTACGGAATGTTAGTACAATGTTACCGGTTTGTCTTTTGTTACACTTCTTCATGTATATATATTGCTGCATGACAAATTAAATACTCCCTCCGTATAAATACTTTTTATGATCTTTTTACTTTTTTGGCTACACATTAATTTCAACTTTTCACGTGGCATGTTTAAAGCTACAAGATTAAAGGAAATTTTTGTACTTTTGACATAACTATTATTTAGGATCACCAAATTGAAAAGTCTTTTTTGTAAACTCTGCATCAAGTCAAACTATGTCATTCTTTTTGAAATTGAGGGAGTAACTTTTAAAATTTTAATGTGAACTTAAATCAATTTGAACTATTATTGAGTATTCTATGGATGAAAAACACTATATTTCATTTGATGTTTCTTTTACCCAATCACGGGAAGGAAACAGAAAAAGGTTTTGATAACATTACATAGAGAAAAAAAGTATAATTGTCTTATTATTTCCTCTTCCGTTATCGTCTTAAAAGCAAAACAATGTTCTCTTGCAATATTGAAAAGTCACACTGCAATATCATGAGTTTGACTTCAATATCTTTACTCTAGCTGATCATTTAGTGCTTCATCAATTAGATTTTAGATTATCAATTATAAAATTAAATATGATCAATCATCCGTATTGAAGTTATTTTGAAGGATAAAATAAACCCGAATAAAATAAGGTACTTATTATAAAAGAAGACATAAAACTTTGACATAGAAAGGGTAAGTTTGTCTACTTCAGAATATAAAATACTTTTGCTACACACATTGGTCAAAGAAGGGAAGTATATGTAATATTTGATACCACAAGGGAGGGATGTGTTATAAAACAATTACTTAGATTGTTCAGTGAGATAAGCAGACTTGATTTCGTTCCGAAATGTCCGAGTTTTAGATTTTGAAGATCAATAAAATAAAAGCTTTTAGATTTTGAAGATCAATAATATAAGAGGAAGGAGTGATAAAATAAATACGAATAGAAAAGGAAAGGGAGGAAATGCAAAAAAATTAGAAGAGAAAAATCATACAAATCACTGCACCCTTTTTTGCATCCCTTAAATGAATTTCAGTTGATTAGGACGAGTTTGTTAAAAACTATGCTGAACAGTTTCTGTAGGTTGAACTTGGCCAAACCCTCAAGGGAGGTCTCTGAAATTATTCCTTAAAAATATTATCTCTAGAGAACGAGTTATGATAGGATACTTATAATAATATCTTTGTTGGTGAGGGCGAGCTGTGAGCATCACTTAAATCTTATGGTCTGCTAACGTTAAGTTAATTAAATATATGTGTGTGTATGCGGTTTCAAGCTTCAATCGATTAAGAAACATATAGAAAGTTAGGCATCTCCAAGATGATGGTTGAGGCATATGCCTTTACATCGAGACAGCTCACATGTTGGTCTCAAGACAACCTTTGTGGGTAAAACACTCAAAATAATGACAAAAGGTGAGGCTTAACTGGGATGGATGAAGGGTCCCTTATTCTTCAATTTGAGATGAAGGAAGAAGGAAAGCTTACAGTTGCTGGCACATATTCTGTTCTGCCAAATCTTGTAACTTTAATCTCTCTCCTGATGATCAGTTAAGTCTCTATGGAGTTGGACATTGTTGACAGCTTACACAACTTGCAAGAGATTATGTTATTCTTGGATAAGAACATTTATTTTCACCATTTACTGGGAGGTTAATTTTTTTCTCATGGCAGAGAAGGACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAG</genome_strand>
        <mrna_strand>AGAAAAATAGAGTATTTATTTGTTCTTGTTGTGTTTTTTCATTCATCTCGAAAACATTGGTTTATCAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGATATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAAAGGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E331699" ref_strand="+" ref_description="SGN-E331699 [cTOD-7-L11]">
      <seq>tttaccccttttacgtcaacttttagtttctttcttgttctttttcccagaatgtaaatattaaagcaaaatcacaatattagtttgacaagatagatgatagatggaagttacggaatgttagtacaatgttaccggtttgtcttttgttacacttcttcatgtatatatattgctgcatgacaaattaaatactccctccgtataaatactttttatgatctttttacttttttggctacacattaatttcaacttttcacgtggcatgtttaaagctacaagattaaaggaaatttttgtacttttgacataactattatttaggatcaccaaattgaaaagtcttttttgtaaactctgcatcaagtcaaactatgtcattctttttgaaattgagggagtaacttttaaaattttaatgtgaacttaaatcaatttgaactattattgagtattctatggatgaaaaacactatatttcatttgatgtttcttttacccaatcacgggaaggaaacagaaaaaggttttgataacattacatagagaaaaaaagtataattgtcttattatttcctcttccgctatcgtcttaaaagcaaaacaatgttctcttgcaatattgaaaagtcacactgcaatatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="47230" stop="45980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46930" g_stop="46280" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E331699" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46930" e_stop="46280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACCCCTTTTACGTCAACTTTTAGTTTCTTTCTTGTTCTTTTTCCCAGAATGTAAATATTAAAGCAAAATCACAATATTAGTTTGACAAGATAGATGATAGATGGAAGTTACGGAATGTTAGTACAATGTTACCGGTTTGTCTTTTGTTACACTTCTTCATGTATATATATTGCTGCATGACAAATTAAATACTCCCTCCGTATAAATACTTTTTATGATCTTTTTACTTTTTTGGCTACACATTAATTTCAACTTTTCACGTGGCATGTTTAAAGCTACAAGATTAAAGGAAATTTTTGTACTTTTGACATAACTATTATTTAGGATCACCAAATTGAAAAGTCTTTTTTGTAAACTCTGCATCAAGTCAAACTATGTCATTCTTTTTGAAATTGAGGGAGTAACTTTTAAAATTTTAATGTGAACTTAAATCAATTTGAACTATTATTGAGTATTCTATGGATGAAAAACACTATATTTCATTTGATGTTTCTTTTACCCAATCACGGGAAGGAAACAGAAAAAGGTTTTGATAACATTACATAGAGAAAAAAAGTATAATTGTCTTATTATTTCCTCTTCCGTTATCGTCTTAAAAGCAAAACAATGTTCTCTTGCAATATTGAAAAGTCACACTGCAATATCATG</genome_strand>
        <mrna_strand>TTTACCCCTTTTACGTCAACTTTTAGTTTCTTTCTTGTTCTTTTTCCCAGAATGTAAATATTAAAGCAAAATCACAATATTAGTTTGACAAGATAGATGATAGATGGAAGTTACGGAATGTTAGTACAATGTTACCGGTTTGTCTTTTGTTACACTTCTTCATGTATATATATTGCTGCATGACAAATTAAATACTCCCTCCGTATAAATACTTTTTATGATCTTTTTACTTTTTTGGCTACACATTAATTTCAACTTTTCACGTGGCATGTTTAAAGCTACAAGATTAAAGGAAATTTTTGTACTTTTGACATAACTATTATTTAGGATCACCAAATTGAAAAGTCTTTTTTGTAAACTCTGCATCAAGTCAAACTATGTCATTCTTTTTGAAATTGAGGGAGTAACTTTTAAAATTTTAATGTGAACTTAAATCAATTTGAACTATTATTGAGTATTCTATGGATGAAAAACACTATATTTCATTTGATGTTTCTTTTACCCAATCACGGGAAGGAAACAGAAAAAGGTTTTGATAACATTACATAGAGAAAAAAAGTATAATTGTCTTATTATTTCCTCTTCCGCTATCGTCTTAAAAGCAAAACAATGTTCTCTTGCAATATTGAAAAGTCACACTGCAATATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="+" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="52761" stop="53890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53061" g_stop="53583" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53061" e_stop="53583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCGTCATGGTCACGATGGACCATCATGGACTCCGTCGTCCCATACTTATGCAATTTCATCAGCTGCTCTTCTTCATT-CCCTCGACGGCAATTATGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTTCAAAACACTTAAACTCTTGAAATATGGGTACTGGGATCACTTCTCTGAACTTCATGACGAACCTGCAAGATGGACCGTCATAGACATAACAGACCGTCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAATCACGACGGACCATCATAAGTTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTGCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAATAAACTTATATAAAAATTAGCACAAAAAGGGTTTTGGACACACTAATCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCA</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="61727" stop="60650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61427" g_stop="60950" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61427" e_stop="60950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTACATTTAGGAGAACGGAGTGTCACGTACCGACACAAGAGAATTAATGAATA-TGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCTATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTATTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGA-TTTATGATATTACTT-GT-TATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTTGTCTTCAACCCAACAGTAATTCTAGCCAGTCTTCGTCACACCAGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="61728" stop="60893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61428" g_stop="61191" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61428" e_stop="61191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTACATTTAGGAGAACGGAGTGTCACGTACCGACACAAGAGAATTAATGAATA-TGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCTATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTATTAATGATATAGTACTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0057G01-2ToRM/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C10HBa0057G01.2" temp_strand="-" temp_description="C10HBa0057G01.2  AC233134.4 htgs_phase:1 submitted_to_sgn_as:C10HBa0057G01 upload_account_name:manual">
        <position start="61868" stop="61078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61783" g_stop="61378" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0057G01.2" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0057G01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61783" e_stop="61378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTTCGGTGGAGGTAGGTTATGGTTTTTCTCTTATGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTTTATGCTTGCATGAATGTAATTATATAATTGTGATGAAATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTGTTATTGATGATGCATTGGTATAAAAGAAGGCTTGATGAACTAAAGTAATGAGATTAATGATGCCTTGGTATAAGAGAAGGCTTGATGAATAGATAGAATGAGATTAGGGAATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTACATTTAGGAGAACGGAGTGTCACGTACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGT--TTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGATTAAGG-GATCAG-GTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17522" PGL_stop="16518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17522" e_stop="17490"/>
            <exon e_start="17334" e_stop="16518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.871" e_score="0.515"/>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.515">
            <gDNA_exon_boundary e_start="17522" e_stop="17490" e_length="33"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.871">
            <gDNA_intron_boundary i_start="17489" i_stop="17335" i_length="155"/>
          </intron>
          <exon e_serial="2" e_score="0.908">
            <gDNA_exon_boundary e_start="17334" e_stop="16518" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17522" stop="17490"/>
              <exon start="17334" stop="16852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17235" stop="16518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTAGGTCCTCGTGAGCTTGAGGATGCTACA : TTGGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTTCAAAAACACTTAAACTCTTGAAAATATGGGTACTGGGATCACTTCTCTGAACTTCATGACGAACCTGCAAGATGGACCGTCATAGACATAACAGACCGTCACAAGCTTCATAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGATCGTCACAATCACGACGGACCGTCATAAGTTCCATAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTGCGCATTCAGCTTTGGACAGATTTCATGCAAAATAAAAAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAAGAAAAAGTATTAATAATATCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTCGTTGTTTGTCCTCAAGTGACGCACTATGACTCAATACATTATCTTTGTACAATAGTATCCATGTTTCATTCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGCTTGAACTATGTGGGATCGGAACATGACACAGACTCCCCATGCACTAACACCTATCCTCTTCAATTTCTCACTAAGGTGCTAATAATTCCGATATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACATGATGATTTCAATTTGAGTATAAGGATTAC</gDNA_template>
            <first_frame> L  V  G  P  R  E  L  E  D  A  T  :  L  V  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  S  F  Q  K  H  L  N  S  *  K  Y  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  R  W  T  V  I  D  I  T  D  R  H  K  L  H  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  H  N  H  D  G  P  S  *  V  P  *  V  V  S  S  A  F  F  R  S  K  S  A  H  S  A  L  D  R  F  H  A  K  *  K  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  K  K  K  Y  *  *  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  V  C  P  Q  V  T  H  Y  D  S  I  H  Y  L  C  T  I  V  S  M  F  H  S  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  S  L  L  G  L  N  Y  V  G  S  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  K  V  L  I  I  P  I  L  Q  L  V  S  S  L  Q  N  K  I  L  I  F  H  M  M  I  S  I  *  V  *  G  L  </first_frame>
            <second_frame>  W  *  V  L  V  S  L  R  M  L  H :   W  L  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  R  F  K  N  T  *  T  L  E  N  M  G  T  G  I  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  T  *  Q  T  V  T  S  F  I  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  I  V  T  I  T  T  D  R  H  K  F  H  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  M  Q  N  K  K  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  R  K  S  I  N  N  I  V  K  P  R  Y  I  N  T  L  N  L  N  S  L  F  V  L  K  *  R  T  M  T  Q  Y  I  I  F  V  Q  *  Y  P  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  H  Y  *  A  *  T  M  W  D  R  N  M  T  Q  T  P  H  A  L  T  P  I  L  F  N  F  S  L  R  C  *  *  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  *  *  F  Q  F  E  Y  K  D  Y </second_frame>
            <third_frame>   G  R  S  S  *  A  *  G  C  Y   : I  G  C  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  V  S  K  T  L  K  L  L  K  I  W  V  L  G  S  L  L  *  T  S  *  R  T  C  K  M  D  R  H  R  H  N  R  P  S  Q  A  S  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  S  S  Q  S  R  R  T  V  I  S  S  I  G  G  L  F  C  I  F  S  L  K  I  C  A  F  S  F  G  Q  I  S  C  K  I  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  S  *  N  H  G  I  S  T  P  S  T  *  I  R  C  L  S  S  S  D  A  L  *  L  N  T  L  S  L  Y  N  S  I  H  V  S  F  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  L  C  G  I  G  T  *  H  R  L  P  M  H  *  H  L  S  S  S  I  S  H  *  G  A  N  N  S  D  I  A  T  S  V  L  T  S  K  Q  N  P  H  F  S  H  D  D  F  N  L  S  I  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16866" stop="16531"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRETTVYQHPQLKFVVCPQVTHYDSIHYLCTIVSMFHSLQSFGYQSRLISSNLCMLSLLGLNYVGSEHDTDSPCTNTYPLQFLTKVLIIPILQLVSSLQNKILIFHMMISI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17129" stop="16923"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTVTSFITPHLVRLPHLPSAAALRCHLRIVTITTDRHKFHRWSLLHFFAQNLRIQLWTDFMQNKKKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32107" PGL_stop="31345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32107" e_stop="31345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="32107" e_stop="31345" e_length="763"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32107" stop="31345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354383" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCGATGGAAAAAGTGAATCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGAGTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTGGGGGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTTCGCAAGTTGAGGTCAAGAGAGATTGCATCCATCAAAGTGCAATGGAAGAATCGACCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGAAGAAAAATACCCACATTTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGATGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGGAGCAGTAGATTTTATTTCTGGAAAAATAGGCTGAGGCGACGAACCCCACGACGGACCGTCATGGGCACGACGGACCGTCGCAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCT</gDNA_template>
            <first_frame> G  F  D  G  K  S  E  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  E  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  P  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  G  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  V  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  V  R  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  L  K  K  P  L  G  R  R  R  Q  I  C  E  E  K  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  C  D  R  S  G  M  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  G  A  V  D  F  I  S  G  K  I  G  *  G  D  E  P  H  D  G  P  S  W  A  R  R  T  V  A  G  S  R  F  K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  </first_frame>
            <second_frame>  D  S  M  E  K  V  N  L  F  K  K  S  F  *  R  R  K  V  D  K  K  N  M  Q  I  E  R  L  E  S  *  S  S  W  R  V  N  K  S  C  *  K  F  H  Q  *  K  G  *  C  G  L  V  K  G  V  N  *  V  Q  G  T  L  D  H  L  K  Y  L  S  E  W  G  R  W  L  M  S  *  P  C  L  Q  G  C  P  E  Y  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  T  C  L  M  R  R  S  L  L  L  F  *  I  E  K  F  A  S  *  G  Q  E  R  L  H  P  S  K  C  N  G  R  I  D  R  *  R  S  H  L  G  E  G  G  R  Y  A  K  K  N  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  V  I  V  R  G  *  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  E  Q  *  I  L  F  L  E  K  *  A  E  A  T  N  P  T  T  D  R  H  G  H  D  G  P  S  Q  G  L  V  S  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S </second_frame>
            <third_frame>   I  R  W  K  K  *  I  Y  S  R  K  A  S  S  G  A  K  *  T  K  R  I  C  R  S  K  G  *  R  V  R  V  H  G  G  *  T  S  L  V  E  S  F  T  N  E  R  G  D  A  V  W  *  K  G  *  T  K  S  K  V  H  W  T  I  *  S  T  *  A  S  G  G  G  G  L  *  V  S  L  A  S  R  A  V  R  S  T  S  G  I  P  C  V  D  V  E  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  S  F  A  *  *  E  L  V  L  *  G  G  A  C  C  Y  F  R  *  R  S  S  Q  V  E  V  K  R  D  C  I  H  Q  S  A  M  E  E  S  T  V  E  E  A  T  W  E  K  E  A  D  M  R  R  K  I  P  T  F  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  W  S  S  R  F  Y  F  W  K  N  R  L  R  R  R  T  P  R  R  T  V  M  G  T  T  D  R  R  R  V  S  F  Q  N  T  *  K  I  *  N  W  V  L  K  I  D  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32107" stop="31523"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFDGKSESIQEKLLAAQSRQKEYADRKVRELEFMEGEQVLLKVSPMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPGLSGVHPVFHVSMLKRYHGDGNYIIRWDSVLLDENLSYEEEPVAILDREVRKLRSREIASIKVQWKNRPLKKPLGRRRQICEEKYPHLFTDSGTPFRPCFPSCDRSGMNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="33648" PGL_stop="36357"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33648" e_stop="36357"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.950"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="33648" e_stop="36357" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33648" stop="34360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33648" stop="34243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33648" stop="34173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33719" stop="34398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33719" stop="34077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34168" stop="34826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34237" stop="34998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34237" stop="34897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34464" stop="35006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34640" stop="34970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34847" stop="35406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34851" stop="35615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34931" stop="35720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34933" stop="35467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35007" stop="35704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35569" stop="36286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35572" stop="36233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35925" stop="36357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAACTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTTCAATAACTCTTTAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATTAATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGGACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGATATTGGGGGTCTGTAACTCTGTTTGGGACAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCGGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACCTCCCTTTCGAAACCTTTTTGATGTCGATGTTTTGATGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATTCGCTCTTGTGGACTGAAACATAATTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCTTTTCCTATCCCTCAAAGTTCGGGGGATATACTTCTCCATAAACAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCATTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATACATGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGGAGCCTGAGGTACTGGTGCAGAAAACACTGGAGGTGTCTGGCCCTGATCAGACAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGTAATTCCTTATTTTGCACTTGTTCATTTTCCCCTTCCTCCCCCTCTCTTACCACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACTTCTTCCACGGCCTCTTGCCACTACTCCTC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  T  H  E  R  S  R  G  I  R  K  T  K  G  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  F  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  C  A  R  F  K  I  N  T  E  V  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  S  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  I  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  R  Y  W  G  S  V  T  L  F  G  T  I  S  P  N  M  S  N  L  P  T  S  I  T  F  S  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  F  P  N  P  V  L  *  C  K  H  H  *  T  H  L  P  F  E  T  F  L  M  S  M  F  *  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  F  A  L  V  D  *  N  I  I  E  W  H  I  W  I  V  H  E  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  P  I  P  Q  S  S  G  D  I  L  L  H  K  Q  L  E  N  E  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  Y  M  R  G  A  I  V  A  A  C  C  T  S  G  A  *  G  T  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  L  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  V  T  A  L  V  P  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  L  L  P  R  P  L  A  T  T  P  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  F  N  N  S  L  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  L  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  V  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  K  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  D  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  F  M  H  R  S  L  R  E  V  L  T  G  R  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  S  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  F  D  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  S  L  L  W  T  E  T  *  L  S  G  I  S  G  *  C  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  Q  E  L  I  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  H  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  S  C  V  V  A  R  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  T  C  G  E  P  *  *  P  H  V  V  P  P  E  P  E  V  L  V  Q  K  T  L  E  V  S  G  P  D  Q  T  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  V  I  P  Y  F  A  L  V  H  F  P  L  P  P  P  L  L  P  L  P  Q  S  V  E  E  S  P  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  F  F  H  G  L  L  P  L  L  L </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  N  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  *  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  V  C  P  V  Q  D  *  Y  R  S  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  G  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  K  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  K  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  H  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  I  L  G  V  C  N  S  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  L  G  S  C  I  G  L  S  E  K  C  *  P  V  G  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  A  P  L  N  S  P  P  F  R  N  L  F  D  V  D  V  L  M  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  R  S  C  G  L  K  H  N  *  V  A  Y  L  D  S  A  R  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  F  S  Y  P  S  K  F  G  G  Y  T  S  P  *  T  T  R  E  *  G  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  I  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  L  V  *  *  L  V  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  Y  W  C  R  K  H  W  R  C  L  A  L  I  R  Q  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  *  F  L  I  L  H  L  F  I  F  P  F  L  P  L  S  Y  H  F  L  S  R  W  R  S  H  R  P  S  T  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  S  T  A  S  C  H  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35879" stop="36190"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIVSILRFSTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRYWCRKHWRCLALIRQPAKISQNLIDHLWGRLGW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34375" stop="34620"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRLIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33912" stop="34151"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNPVHQTHERSRGIRKTKGHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35390" stop="35602"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APLNSPPFRNLFDVDVLMKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRIRSCGLKHN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35079" stop="35279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAILVTTITSTTTSSRITASTMTTSTSRYWGSVTLFGTISPNMSNLPTSITFSWVHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36159" stop="36356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSLFCTCSFSPSSPSLTTSSVGGGVTALVPDGLGARPLPLEDVLPRLLPRPLATTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="35665" PGL_stop="34220"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35665" e_stop="35493"/>
            <exon e_start="34747" e_stop="34220"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="35665" e_stop="35493" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35492" i_stop="34748" i_length="745"/>
          </intron>
          <exon e_serial="2" e_score="0.934">
            <gDNA_exon_boundary e_start="34747" e_stop="34220" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35665" stop="35493"/>
              <exon start="34747" stop="34220"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAATTATGTTTCAGTCCACAAGAGCGAATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTCCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCAGATAGGGATATTGACTTCTGTATTAATCTTGAACCGGGCACACGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTAAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  S  C  T  I  Q  I  C  H  S  I  M  F  Q  S  T  R  A  N  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  G  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  P  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  R  *  G  Y  *  L  L  Y  *  S  *  T  G  H  T  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  *  R  V  I  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  N  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  K  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  Y  V  S  V  H  K  S  E  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  W  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  Q  I  G  I  L  T  S  V  L  I  L  N  R  A  H  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  L  K  S  Y  *  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35664" stop="35493"/>
                    <exon start="34747" stop="34221"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCINLEPGTRPISIPPYRMAPAELRELKAQLKELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="36290" PGL_stop="35737"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36290" e_stop="35737"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="36290" e_stop="35737" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36290" stop="35737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGGTACTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTGGTAAGAGAGGGGGAGGAAGGGGAAAATGAACAAGTGCAAAATAAGGAATTACCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTGTCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGTACCTCAGGCTCCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCATGTATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAATGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  I  W  Y  *  G  G  D  S  S  T  D  *  G  S  G  K  R  G  G  G  R  G  K  *  T  S  A  K  *  G  I  T  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  V  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  T  T  C  G  Y  Y  G  S  P  H  V  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  I  *  G  C  L  R  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  C  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  S  G  T  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  K  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  V  P  Q  A  P  E  V  Q  H  A  A  T  M  A  P  R  M  Y  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  L  V  L  G  R  *  L  L  H  R  L  R  K  W  *  E  R  G  R  K  G  K  M  N  K  C  K  I  R  N  Y  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  C  L  I  R  A  R  H  L  Q  C  F  L  H  Q  Y  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  C  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  L  R  M  L  T  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  M  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36289" stop="35738"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSGTRAVTPPPTEEVVREGEEGENEQVQNKELPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPVPQAPEVQHAATMAPRMYVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="37806" PGL_stop="37086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37806" e_stop="37696"/>
            <exon e_start="37584" e_stop="37086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.964"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="37806" e_stop="37696" e_length="111"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37695" i_stop="37585" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="37584" e_stop="37086" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37806" stop="37696"/>
              <exon start="37584" stop="37177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37321" stop="37086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGACGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCAACGTTCCGGTACAAGGATAGAATATGG : ATCGGGTGTCACGTTGCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCAGGTGTCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGTTAATATATCCAATCCAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  T  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  K  D  R  I  W  :  I  G  C  H  V  A  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  R  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  F  V  I  C  </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  R  T  K  V  V  R  L  G  D  R  V  Q  R  S  G  T  R  I  E  Y  G :   S  G  V  T  L  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  V  N  I  S  N  P  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  L  L  F  V </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  N  V  P  V  Q  G  *  N  M   : D  R  V  S  R  C  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  Q  V  S  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  L  I  Y  P  I  Q  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  N  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  C  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0057G01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="47797" PGL_stop="41551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47797" e_stop="47460"/>
            <exon e_start="45109" e_stop="44568"/>
            <exon e_start="44487" e_stop="44398"/>
            <exon e_start="44302" e_stop="44063"/>
            <exon e_start="43086" e_stop="43051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.695" e_score="1.000"/>
          <exon-intron don_prob="0.823" acc_prob="0.268" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47797" e_stop="47460" e_length="338"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.986">
            <gDNA_intron_boundary i_start="47459" i_stop="45110" i_length="2350"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45109" e_stop="44568" e_length="542"/>
          </exon>
          <intron i_serial="2" don_prob="0.984" acc_prob="0.695">
            <gDNA_intron_boundary i_start="44567" i_stop="44488" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44487" e_stop="44398" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.823" acc_prob="0.268">
            <gDNA_intron_boundary i_start="44397" i_stop="44303" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44302" e_stop="44063" e_length="240"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.854">
            <gDNA_intron_boundary i_start="44062" i_stop="43087" i_length="976"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="43086" e_stop="43051" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47797" stop="47460"/>
              <exon start="45109" stop="44907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45103" stop="44631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45051" stop="44568"/>
              <exon start="44487" stop="44398"/>
              <exon start="44302" stop="44063"/>
              <exon start="43086" stop="43051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45051" stop="44568"/>
              <exon start="44487" stop="44398"/>
              <exon start="44302" stop="44072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAAATAGAGTATTTATTTGTTCTTGTTGTGTTTTTTCATTCATCTCGAAAACATTGGTTTATCAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGA : AGAAGGACAATTTGAAAGAATCAGTCGATCACTATGAAAAGGGGGAGCGATTAGATTTGGGGGATAATGACCCTGAATATGAACCTGAAGAGTATGGCACAGTTGATTATGATGAGAATGGGATTGAACACGACGGTGTTCAGGAAGAGGGAAATGAAATAGAGGAAGAACCTGAAGAGGCAGATGTTGGTGAAGAGGAAGAGGGTGACATGGCGGAAGAGGATGTTGAAGATGTTCATGAGGAAAATGAGGGTGATGAAGAAGATGAGCATGCTGAGATGGCTGATGCAGCAGAGGAGGAAGAACATCATGAAGTTGTTGACGAAAGGCGTAAGCGGAAGGAATTTGAAATATTTGTTGGTGGCCTTGACAAGGATGCTACCGAGGAGGATCTCAGAAAGGTCTTCAGTAAAGTTGGCGAGATTACTGAAGTGAGGCTTCTGATGAATTCTCAGACAAAGAAAAATAAAGGATTTGCATTCCTGCGATTTGCCACTGTTGAACAAGCAAAAAGAGCTTGTACTGAGCTGAAAACCCCAGTG : ATCAATGGAAAACAGTGTGGTGTCTCTCCAAGTCAAGACAATGATACTCTGTTTTTGGGTAACATATGCAAGACCTGGACAAAAGAAGCT : TTAAAAGAGAAGCTGAAGCATTATGGTGTTCACAATATAGAGGATTTGACGTTGGTCGAAGACACTAATAATGAGGGAATGAATCGAGGATTTGCTTTCTTGGAGTTCTCTTCACGTTCAGAGGCCATGGATGCTTTTAAGCGGTTACAGAAGAGAGATATTGTATTTGGAGTTGATAGGCCCGCAAAGGTTTCTTTTGAGGATTCATTCATTGATCCTGGGGATGAAATCATGTCACAG : GTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCC</gDNA_template>
            <first_frame> R  K  I  E  Y  L  F  V  L  V  V  F  F  H  S  S  R  K  H  W  F  I  N  S  *  N  Y  A  S  K  I  S  E  K  D  G  F  R  F  W  I  Q  K  R  W  P  Y  T  S  W  Y  A  K  V  S  G  K  V  C  *  G  R  G  T  N  G  S  T  G  Q  R  *  G  G  G  G  G  I  *  R  K  A  *  A  *  N  H  A  I  G  A  *  G  T  G  *  N  C  I  E  C  E  C  C  G  K  G  G  G  F  R  E  E :   E  G  Q  F  E  R  I  S  R  S  L  *  K  G  G  A  I  R  F  G  G  *  *  P  *  I  *  T  *  R  V  W  H  S  *  L  *  *  E  W  D  *  T  R  R  C  S  G  R  G  K  *  N  R  G  R  T  *  R  G  R  C  W  *  R  G  R  G  *  H  G  G  R  G  C  *  R  C  S  *  G  K  *  G  *  *  R  R  *  A  C  *  D  G  *  C  S  R  G  G  R  T  S  *  S  C  *  R  K  A  *  A  E  G  I  *  N  I  C  W  W  P  *  Q  G  C  Y  R  G  G  S  Q  K  G  L  Q  *  S  W  R  D  Y  *  S  E  A  S  D  E  F  S  D  K  E  K  *  R  I  C  I  P  A  I  C  H  C  *  T  S  K  K  S  L  Y  *  A  E  N  P  S   : D  Q  W  K  T  V  W  C  L  S  K  S  R  Q  *  Y  S  V  F  G  *  H  M  Q  D  L  D  K  R  S   : F  K  R  E  A  E  A  L  W  C  S  Q  Y  R  G  F  D  V  G  R  R  H  *  *  *  G  N  E  S  R  I  C  F  L  G  V  L  F  T  F  R  G  H  G  C  F  *  A  V  T  E  E  R  Y  C  I  W  S  *  *  A  R  K  G  F  F  *  G  F  I  H  *  S  W  G  *  N  H  V  T   : G  *  N  S  V  Y  *  W  S  C  C  I  </first_frame>
            <second_frame>  E  K  *  S  I  Y  L  F  L  L  C  F  F  I  H  L  E  N  I  G  L  S  I  L  E  T  M  P  P  K  S  V  R  K  T  A  S  G  S  G  S  K  R  G  G  R  T  P  R  G  T  P  K  S  Q  A  K  S  V  K  V  E  E  P  M  E  V  Q  D  K  D  K  A  V  E  E  V  S  E  E  K  P  E  L  K  I  T  Q  S  E  P  E  E  P  A  E  T  A  L  N  V  N  A  V  G  K  G  A  V  S  E  K   : K  K  D  N  L  K  E  S  V  D  H  Y  E  K  G  E  R  L  D  L  G  D  N  D  P  E  Y  E  P  E  E  Y  G  T  V  D  Y  D  E  N  G  I  E  H  D  G  V  Q  E  E  G  N  E  I  E  E  E  P  E  E  A  D  V  G  E  E  E  E  G  D  M  A  E  E  D  V  E  D  V  H  E  E  N  E  G  D  E  E  D  E  H  A  E  M  A  D  A  A  E  E  E  E  H  H  E  V  V  D  E  R  R  K  R  K  E  F  E  I  F  V  G  G  L  D  K  D  A  T  E  E  D  L  R  K  V  F  S  K  V  G  E  I  T  E  V  R  L  L  M  N  S  Q  T  K  K  N  K  G  F  A  F  L  R  F  A  T  V  E  Q  A  K  R  A  C  T  E  L  K  T  P  V  :  I  N  G  K  Q  C  G  V  S  P  S  Q  D  N  D  T  L  F  L  G  N  I  C  K  T  W  T  K  E  A  :  L  K  E  K  L  K  H  Y  G  V  H  N  I  E  D  L  T  L  V  E  D  T  N  N  E  G  M  N  R  G  F  A  F  L  E  F  S  S  R  S  E  A  M  D  A  F  K  R  L  Q  K  R  D  I  V  F  G  V  D  R  P  A  K  V  S  F  E  D  S  F  I  D  P  G  D  E  I  M  S  Q  :  V  K  T  V  F  I  D  G  L  A  V  S </second_frame>
            <third_frame>   K  N  R  V  F  I  C  S  C  C  V  F  S  F  I  S  K  T  L  V  Y  Q  F  L  K  L  C  L  Q  N  Q  *  E  R  R  L  Q  V  L  D  P  K  E  V  A  V  H  L  V  V  R  Q  S  L  R  Q  S  L  L  R  *  R  N  Q  W  K  Y  R  T  K  I  R  R  W  R  R  Y  L  K  K  S  L  S  L  K  S  R  N  R  S  L  R  N  R  L  K  L  H  *  M  *  M  L  W  E  R  G  R  F  Q  R  R  :  R  R  T  I  *  K  N  Q  S  I  T  M  K  R  G  S  D  *  I  W  G  I  M  T  L  N  M  N  L  K  S  M  A  Q  L  I  M  M  R  M  G  L  N  T  T  V  F  R  K  R  E  M  K  *  R  K  N  L  K  R  Q  M  L  V  K  R  K  R  V  T  W  R  K  R  M  L  K  M  F  M  R  K  M  R  V  M  K  K  M  S  M  L  R  W  L  M  Q  Q  R  R  K  N  I  M  K  L  L  T  K  G  V  S  G  R  N  L  K  Y  L  L  V  A  L  T  R  M  L  P  R  R  I  S  E  R  S  S  V  K  L  A  R  L  L  K  *  G  F  *  *  I  L  R  Q  R  K  I  K  D  L  H  S  C  D  L  P  L  L  N  K  Q  K  E  L  V  L  S  *  K  P  Q  * :   S  M  E  N  S  V  V  S  L  Q  V  K  T  M  I  L  C  F  W  V  T  Y  A  R  P  G  Q  K  K  L :   *  K  R  S  *  S  I  M  V  F  T  I  *  R  I  *  R  W  S  K  T  L  I  M  R  E  *  I  E  D  L  L  S  W  S  S  L  H  V  Q  R  P  W  M  L  L  S  G  Y  R  R  E  I  L  Y  L  E  L  I  G  P  Q  R  F  L  L  R  I  H  S  L  I  L  G  M  K  S  C  H  R :   L  K  Q  C  L  L  M  V  L  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47787" stop="47460"/>
                    <exon start="45109" stop="44568"/>
                    <exon start="44487" stop="44398"/>
                    <exon start="44302" stop="44063"/>
                    <exon start="43086" stop="43051"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1236</number_coding_nucleotides>
                  <number_encoded_amino_acids>412</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIYLFLLCFFIHLENIGLSILETMPPKSVRKTASGSGSKRGGRTPRGTPKSQAKSVKVEEPMEVQDKDKAVEEVSEEKPELKITQSEPEEPAETALNVNAVGKGAVSEKKKDNLKESVDHYEKGERLDLGDNDPEYEPEEYGTVDYDENGIEHDGVQEEGNEIEEEPEEADVGEEEEGDMAEEDVEDVHEENEGDEEDEHAEMADAAEEEEHHEVVDERRKRKEFEIFVGGLDKDATEEDLRKVFSKVGEITEVRLLMNSQTKKNKGFAFLRFATVEQAKRACTELKTPVINGKQCGVSPSQDNDTLFLGNICKTWTKEALKEKLKHYGVHNIEDLTLVEDTNNEGMNRGFAFLEFSSRSEAMDAFKRLQKRDIVFGVDRPAKVSFEDSFIDPGDEIMSQVKTVFIDGLAVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="47732" e_stop="47460"/>
            <exon e_start="43086" e_stop="42865"/>
            <exon e_start="42789" e_stop="42489"/>
            <exon e_start="42399" e_stop="42086"/>
            <exon e_start="41994" e_stop="41882"/>
            <exon e_start="41787" e_stop="41684"/>
            <exon e_start="41595" e_stop="41588"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.854" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="0.883"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.978"/>
          <exon-intron don_prob="0.990" acc_prob="0.907" e_score="0.956"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.971"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="47732" e_stop="47460" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.854">
            <gDNA_intron_boundary i_start="47459" i_stop="43087" i_length="4373"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="43086" e_stop="42865" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42864" i_stop="42790" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.883">
            <gDNA_exon_boundary e_start="42789" e_stop="42489" e_length="301"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="42488" i_stop="42400" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.978">
            <gDNA_exon_boundary e_start="42399" e_stop="42086" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42085" i_stop="41995" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="0.956">
            <gDNA_exon_boundary e_start="41994" e_stop="41882" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.907">
            <gDNA_intron_boundary i_start="41881" i_stop="41788" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="0.971">
            <gDNA_exon_boundary e_start="41787" e_stop="41684" e_length="104"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41683" i_stop="41596" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41595" e_stop="41588" e_length="8"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47732" stop="47460"/>
              <exon start="43086" stop="42880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43025" stop="42865"/>
              <exon start="42789" stop="42584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42603" stop="42489"/>
              <exon start="42399" stop="42086"/>
              <exon start="41994" stop="41882"/>
              <exon start="41787" stop="41684"/>
              <exon start="41595" stop="41588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42603" stop="42489"/>
              <exon start="42399" stop="42086"/>
              <exon start="41994" stop="41882"/>
              <exon start="41787" stop="41684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427752" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGA : GTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCCTGGAACGAGGACCATGTGCGGGAGCTTCTTAAAGAATATGGAAAGATAAGAAAAGTTGAGCTTGCCAGAAATAGGCCTTCAGCCAAGAGAAAGGACTTTGGATTTGTCACCTTTGACACTCATGAGGCTGCAGTTACATGTGCTAAAAGCATTAATAATGAGGAATTTGGTGAAGGAGATAACAAG : GTTAAAGTAAGGGCCAGACTATCGAGACCCCTGCATATGGGTAGAGGGAAATATGGTGGACGAGGAGAGTTCCGACCTTGGCGTATGCCTATGCATGGTTCCCATGCCCCTTGGGGTCGTACAGTGCCATATAGTCGTTCTATCCGAGGGACTAGAGTTAGTACGCGTATGCCTCCCGTAGTTAGTCGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTG : TTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTG : GATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAG : ACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGACTATGGTGGAG : GTTCCTAT</gDNA_template>
            <first_frame> Q  F  L  K  L  C  L  Q  N  Q  *  E  R  R  L  Q  V  L  D  P  K  E  V  A  V  H  L  V  V  R  Q  S  L  R  Q  S  L  L  R  *  R  N  Q  W  K  Y  R  T  K  I  R  R  W  R  R  Y  L  K  K  S  L  S  L  K  S  R  N  R  S  L  R  N  R  L  K  L  H  *  M  *  M  L  W  E  R  G  R  F  Q  R  R  :  V  K  T  V  F  I  D  G  L  A  V  S  W  N  E  D  H  V  R  E  L  L  K  E  Y  G  K  I  R  K  V  E  L  A  R  N  R  P  S  A  K  R  K  D  F  G  F  V  T  F  D  T  H  E  A  A  V  T  C  A  K  S  I  N  N  E  E  F  G  E  G  D  N  K  :  V  K  V  R  A  R  L  S  R  P  L  H  M  G  R  G  K  Y  G  G  R  G  E  F  R  P  W  R  M  P  M  H  G  S  H  A  P  W  G  R  T  V  P  Y  S  R  S  I  R  G  T  R  V  S  T  R  M  P  P  V  V  S  R  G  F  K  R  P  T  A  L  R  D  R  H  A  E  M  A  L  S  P  R  G  R  S  M  A  S  P  P  R  R  S  Y  D  R  R  P  P   : V  S  S  Y  P  K  S  N  F  K  R  D  Y  G  R  R  E  E  I  S  P  S  R  S  R  A  I  P  E  Y  P  S  R  V  H  S  D  R  R  I  S  Y  R  D  E  Y  S  S  R  G  S  G  Y  P  E  L  P  R  G  T  H  S  A  A  R  R  S  Y  V  D  D  G  Y  G  Q  R  F  E  R  P  P  P  S  Y  R  E  G  R  G  R  E  Y  D  S  V  S  G  S  K  R  P  Y  M  A  V  :  D  D  V  H  P  H  Y  A  M  A  G  V  R  H  S  R  A  R  L  D  Y  E  L  G  S  A  S  G  S  H  Y  G  D  A  Y  G  D  R :   L  G  R  S  N  L  G  Y  G  G  N  R  S  S  I  S  R  Q  D  S  H  G  I  Y  S  S  R  Q  G  M  D  Y  G  G   : G  S  Y </first_frame>
            <second_frame>  N  S  *  N  Y  A  S  K  I  S  E  K  D  G  F  R  F  W  I  Q  K  R  W  P  Y  T  S  W  Y  A  K  V  S  G  K  V  C  *  G  R  G  T  N  G  S  T  G  Q  R  *  G  G  G  G  G  I  *  R  K  A  *  A  *  N  H  A  I  G  A  *  G  T  G  *  N  C  I  E  C  E  C  C  G  K  G  G  G  F  R  E  E :   L  K  Q  C  L  L  M  V  L  L  Y  P  G  T  R  T  M  C  G  S  F  L  K  N  M  E  R  *  E  K  L  S  L  P  E  I  G  L  Q  P  R  E  R  T  L  D  L  S  P  L  T  L  M  R  L  Q  L  H  V  L  K  A  L  I  M  R  N  L  V  K  E  I  T  R :   L  K  *  G  P  D  Y  R  D  P  C  I  W  V  E  G  N  M  V  D  E  E  S  S  D  L  G  V  C  L  C  M  V  P  M  P  L  G  V  V  Q  C  H  I  V  V  L  S  E  G  L  E  L  V  R  V  C  L  P  *  L  V  V  V  S  N  D  L  Q  H  *  E  I  D  M  Q  R  W  L  C  L  L  G  A  D  P  W  L  H  H  P  G  G  H  M  T  G  D  H  L  :  F  P  H  I  Q  R  V  T  S  R  G  T  M  D  G  A  R  K  S  L  L  L  E  A  E  Q  Y  L  S  I  L  R  G  F  I  L  T  D  V  Y  P  I  G  M  S  I  L  R  V  A  L  V  T  L  N  Y  L  E  V  L  T  L  Q  Q  G  D  L  M  S  M  M  D  M  G  N  G  L  K  D  P  L  H  L  T  V  R  D  V  V  V  N  M  I  L  S  L  V  R  N  V  H  T  W  Q  W :   M  M  F  I  H  T  T  L  W  Q  E  C  G  I  R  V  L  V  W  I  M  N  *  A  V  Q  V  A  P  I  M  E  M  H  M  V  T   : D  S  G  D  Q  I  L  D  M  A  A  T  G  A  P  F  L  G  K  I  L  M  G  Y  T  A  V  V  R  V  W  T  M  V  E  :  V  P   </second_frame>
            <third_frame>   I  L  E  T  M  P  P  K  S  V  R  K  T  A  S  G  S  G  S  K  R  G  G  R  T  P  R  G  T  P  K  S  Q  A  K  S  V  K  V  E  E  P  M  E  V  Q  D  K  D  K  A  V  E  E  V  S  E  E  K  P  E  L  K  I  T  Q  S  E  P  E  E  P  A  E  T  A  L  N  V  N  A  V  G  K  G  A  V  S  E  K   : S  *  N  S  V  Y  *  W  S  C  C  I  L  E  R  G  P  C  A  G  A  S  *  R  I  W  K  D  K  K  S  *  A  C  Q  K  *  A  F  S  Q  E  K  G  L  W  I  C  H  L  *  H  S  *  G  C  S  Y  M  C  *  K  H  *  *  *  G  I  W  *  R  R  *  Q   : G  *  S  K  G  Q  T  I  E  T  P  A  Y  G  *  R  E  I  W  W  T  R  R  V  P  T  L  A  Y  A  Y  A  W  F  P  C  P  L  G  S  Y  S  A  I  *  S  F  Y  P  R  D  *  S  *  Y  A  Y  A  S  R  S  *  S  W  F  Q  T  T  Y  S  I  E  R  *  T  C  R  D  G  F  V  S  *  G  Q  I  H  G  F  T  T  Q  E  V  I  *  P  E  T  T  C :   F  L  I  S  K  E  *  L  Q  E  G  L  W  T  A  R  G  N  L  S  F  *  K  Q  S  N  T  *  V  S  F  E  G  S  F  *  Q  T  Y  I  L  *  G  *  V  F  F  A  W  L  W  L  P  *  I  T  *  R  Y  S  L  C  S  K  E  I  L  C  R  *  W  I  W  A  T  V  *  K  T  P  S  I  L  P  *  G  T  W  S  *  I  *  F  C  L  W  F  E  T  S  I  H  G  S   : G  *  C  S  S  T  L  R  Y  G  R  S  A  A  F  A  C  S  F  G  L  *  T  R  Q  C  K  W  L  P  L  W  R  C  I  W  *  Q  :  T  R  E  I  K  S  W  I  W  R  Q  Q  E  L  H  F  *  A  R  F  S  W  D  I  Q  Q  S  S  G  Y  G  L  W  W  R :   F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47492" stop="47460"/>
                    <exon start="43086" stop="42865"/>
                    <exon start="42789" stop="42489"/>
                    <exon start="42399" stop="42086"/>
                    <exon start="41994" stop="41882"/>
                    <exon start="41787" stop="41684"/>
                    <exon start="41595" stop="41588"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLWERGRFQRRVKTVFIDGLAVSWNEDHVRELLKEYGKIRKVELARNRPSAKRKDFGFVTFDTHEAAVTCAKSINNEEFGEGDNKVKVRARLSRPLHMGRGKYGGRGEFRPWRMPMHGSHAPWGRTVPYSRSIRGTRVSTRMPPVVSRGFKRPTALRDRHAEMALSPRGRSMASPPRRSYDRRPPVSSYPKSNFKRDYGRREEISPSRSRAIPEYPSRVHSDRRISYRDEYSSRGSGYPELPRGTHSAARRSYVDDGYGQRFERPPPSYREGRGREYDSVSGSKRPYMAVDDVHPHYAMAGVRHSRARLDYELGSASGSHYGDAYGDRLGRSNLGYGGNRSSISRQDSHGIYSSRQGMDYGGGSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="47732" e_stop="47460"/>
            <exon e_start="43086" e_stop="42865"/>
            <exon e_start="42789" e_stop="42489"/>
            <exon e_start="42399" e_stop="42086"/>
            <exon e_start="41994" e_stop="41882"/>
            <exon e_start="41790" e_stop="41684"/>
            <exon e_start="41595" e_stop="41551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.854" e_score="0.978"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.994" acc_prob="0.957" e_score="0.966"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.994"/>
          <exon-intron don_prob="0.990" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="47732" e_stop="47460" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.854">
            <gDNA_intron_boundary i_start="47459" i_stop="43087" i_length="4373"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="43086" e_stop="42865" e_length="222"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42864" i_stop="42790" i_length="75"/>
          </intron>
          <exon e_serial="3" e_score="0.966">
            <gDNA_exon_boundary e_start="42789" e_stop="42489" e_length="301"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.957">
            <gDNA_intron_boundary i_start="42488" i_stop="42400" i_length="89"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="42399" e_stop="42086" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="42085" i_stop="41995" i_length="91"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41994" e_stop="41882" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.933">
            <gDNA_intron_boundary i_start="41881" i_stop="41791" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41790" e_stop="41684" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41683" i_stop="41596" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="41595" e_stop="41551" e_length="45"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47732" stop="47460"/>
              <exon start="43086" stop="42880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43025" stop="42865"/>
              <exon start="42789" stop="42584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42725" stop="42489"/>
              <exon start="42399" stop="42086"/>
              <exon start="41994" stop="41882"/>
              <exon start="41790" stop="41684"/>
              <exon start="41595" stop="41551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAATTCTTGAAACTATGCCTCCAAAATCAGTGAGAAAGACGGCTTCAGGTTCTGGATCCAAAAGAGGTGGCCGTACACCTCGTGGTACGCCAAAGTCTCAGGCAAAGTCTGTTAAGGTAGAGGAACCAATGGAAGTACAGGACAAAGATAAGGCGGTGGAGGAGGTATCTGAAGAAAAGCCTGAGCTTAAAATCACGCAATCGGAGCCTGAGGAACCGGCTGAAACTGCATTGAATGTGAATGCTGTGGGAAAGGGGGCGGTTTCAGAGAAGA : GTTAAAACAGTGTTTATTGATGGTCTTGCTGTATCCTGGAACGAGGACCATGTGCGGGAGCTTCTTAAAGAATATGGAAAGATAAGAAAAGTTGAGCTTGCCAGAAATAGGCCTTCAGCCAAGAGAAAGGACTTTGGATTTGTCACCTTTGACACTCATGAGGCTGCAGTTACATGTGCTAAAAGCATTAATAATGAGGAATTTGGTGAAGGAGATAACAAG : GTTAAAGTAAGGGCCAGACTATCGAGACCCCTGCATATGGGTAGAGGGAAATATGGTGGACGAGGAGAGTTCCGACCTTGGCGTATGCCTATGCATGGTTCCCATGCCCCTTGGGGTCGTACAGTGCCATATAGTCGTTCTATCCGAGGGACTAGAGTTAGTACGCGTATGCCTCCCGTAGTTAGTCGTGGTTTCAAACGACCTACAGCATTGAGAGATAGACATGCAGAGATGGCTTTGTCTCCTAGGGGCAGATCCATGGCTTCACCACCCAGGAGGTCATATGACCGGAGACCACCTG : TTTCCTCATATCCAAAGAGTAACTTCAAGAGGGACTATGGACGGCGCGAGGAAATCTCTCCTTCTAGAAGCAGAGCAATACCTGAGTATCCTTCGAGGGTTCATTCTGACAGACGTATATCCTATAGGGATGAGTATTCTTCGCGTGGCTCTGGTTACCCTGAATTACCTAGAGGTACTCACTCTGCAGCAAGGAGATCTTATGTCGATGATGGATATGGGCAACGGTTTGAAAGACCCCCTCCATCTTACCGTGAGGGACGTGGTCGTGAATATGATTCTGTCTCTGGTTCGAAACGTCCATACATGGCAGTG : GATGATGTTCATCCACACTACGCTATGGCAGGAGTGCGGCATTCGCGTGCTCGTTTGGATTATGAACTAGGCAGTGCAAGTGGCTCCCATTATGGAGATGCATATGGTGACAG : TAGACTCGGGAGATCAAATCTTGGATATGGCGGCAACAGGAGCTCCATTTCTAGGCAAGATTCTCATGGGATATACAGCAGTCGTCAGGGTATGGACTATGGTGGAG : GTTCCTATGGTGGAAGTGATGTAGGTGGATTGTATTCGTCCAGCT</gDNA_template>
            <first_frame> Q  F  L  K  L  C  L  Q  N  Q  *  E  R  R  L  Q  V  L  D  P  K  E  V  A  V  H  L  V  V  R  Q  S  L  R  Q  S  L  L  R  *  R  N  Q  W  K  Y  R  T  K  I  R  R  W  R  R  Y  L  K  K  S  L  S  L  K  S  R  N  R  S  L  R  N  R  L  K  L  H  *  M  *  M  L  W  E  R  G  R  F  Q  R  R  :  V  K  T  V  F  I  D  G  L  A  V  S  W  N  E  D  H  V  R  E  L  L  K  E  Y  G  K  I  R  K  V  E  L  A  R  N  R  P  S  A  K  R  K  D  F  G  F  V  T  F  D  T  H  E  A  A  V  T  C  A  K  S  I  N  N  E  E  F  G  E  G  D  N  K  :  V  K  V  R  A  R  L  S  R  P  L  H  M  G  R  G  K  Y  G  G  R  G  E  F  R  P  W  R  M  P  M  H  G  S  H  A  P  W  G  R  T  V  P  Y  S  R  S  I  R  G  T  R  V  S  T  R  M  P  P  V  V  S  R  G  F  K  R  P  T  A  L  R  D  R  H  A  E  M  A  L  S  P  R  G  R  S  M  A  S  P  P  R  R  S  Y  D  R  R  P  P   : V  S  S  Y  P  K  S  N  F  K  R  D  Y  G  R  R  E  E  I  S  P  S  R  S  R  A  I  P  E  Y  P  S  R  V  H  S  D  R  R  I  S  Y  R  D  E  Y  S  S  R  G  S  G  Y  P  E  L  P  R  G  T  H  S  A  A  R  R  S  Y  V  D  D  G  Y  G  Q  R  F  E  R  P  P  P  S  Y  R  E  G  R  G  R  E  Y  D  S  V  S  G  S  K  R  P  Y  M  A  V  :  D  D  V  H  P  H  Y  A  M  A  G  V  R  H  S  R  A  R  L  D  Y  E  L  G  S  A  S  G  S  H  Y  G  D  A  Y  G  D  S :   R  L  G  R  S  N  L  G  Y  G  G  N  R  S  S  I  S  R  Q  D  S  H  G  I  Y  S  S  R  Q  G  M  D  Y  G  G   : G  S  Y  G  G  S  D  V  G  G  L  Y  S  S  S  </first_frame>
            <second_frame>  N  S  *  N  Y  A  S  K  I  S  E  K  D  G  F  R  F  W  I  Q  K  R  W  P  Y  T  S  W  Y  A  K  V  S  G  K  V  C  *  G  R  G  T  N  G  S  T  G  Q  R  *  G  G  G  G  G  I  *  R  K  A  *  A  *  N  H  A  I  G  A  *  G  T  G  *  N  C  I  E  C  E  C  C  G  K  G  G  G  F  R  E  E :   L  K  Q  C  L  L  M  V  L  L  Y  P  G  T  R  T  M  C  G  S  F  L  K  N  M  E  R  *  E  K  L  S  L  P  E  I  G  L  Q  P  R  E  R  T  L  D  L  S  P  L  T  L  M  R  L  Q  L  H  V  L  K  A  L  I  M  R  N  L  V  K  E  I  T  R :   L  K  *  G  P  D  Y  R  D  P  C  I  W  V  E  G  N  M  V  D  E  E  S  S  D  L  G  V  C  L  C  M  V  P  M  P  L  G  V  V  Q  C  H  I  V  V  L  S  E  G  L  E  L  V  R  V  C  L  P  *  L  V  V  V  S  N  D  L  Q  H  *  E  I  D  M  Q  R  W  L  C  L  L  G  A  D  P  W  L  H  H  P  G  G  H  M  T  G  D  H  L  :  F  P  H  I  Q  R  V  T  S  R  G  T  M  D  G  A  R  K  S  L  L  L  E  A  E  Q  Y  L  S  I  L  R  G  F  I  L  T  D  V  Y  P  I  G  M  S  I  L  R  V  A  L  V  T  L  N  Y  L  E  V  L  T  L  Q  Q  G  D  L  M  S  M  M  D  M  G  N  G  L  K  D  P  L  H  L  T  V  R  D  V  V  V  N  M  I  L  S  L  V  R  N  V  H  T  W  Q  W :   M  M  F  I  H  T  T  L  W  Q  E  C  G  I  R  V  L  V  W  I  M  N  *  A  V  Q  V  A  P  I  M  E  M  H  M  V  T   : V  D  S  G  D  Q  I  L  D  M  A  A  T  G  A  P  F  L  G  K  I  L  M  G  Y  T  A  V  V  R  V  W  T  M  V  E  :  V  P  M  V  E  V  M  *  V  D  C  I  R  P  A </second_frame>
            <third_frame>   I  L  E  T  M  P  P  K  S  V  R  K  T  A  S  G  S  G  S  K  R  G  G  R  T  P  R  G  T  P  K  S  Q  A  K  S  V  K  V  E  E  P  M  E  V  Q  D  K  D  K  A  V  E  E  V  S  E  E  K  P  E  L  K  I  T  Q  S  E  P  E  E  P  A  E  T  A  L  N  V  N  A  V  G  K  G  A  V  S  E  K   : S  *  N  S  V  Y  *  W  S  C  C  I  L  E  R  G  P  C  A  G  A  S  *  R  I  W  K  D  K  K  S  *  A  C  Q  K  *  A  F  S  Q  E  K  G  L  W  I  C  H  L  *  H  S  *  G  C  S  Y  M  C  *  K  H  *  *  *  G  I  W  *  R  R  *  Q   : G  *  S  K  G  Q  T  I  E  T  P  A  Y  G  *  R  E  I  W  W  T  R  R  V  P  T  L  A  Y  A  Y  A  W  F  P  C  P  L  G  S  Y  S  A  I  *  S  F  Y  P  R  D  *  S  *  Y  A  Y  A  S  R  S  *  S  W  F  Q  T  T  Y  S  I  E  R  *  T  C  R  D  G  F  V  S  *  G  Q  I  H  G  F  T  T  Q  E  V  I  *  P  E  T  T  C :   F  L  I  S  K  E  *  L  Q  E  G  L  W  T  A  R  G  N  L  S  F  *  K  Q  S  N  T  *  V  S  F  E  G  S  F  *  Q  T  Y  I  L  *  G  *  V  F  F  A  W  L  W  L  P  *  I  T  *  R  Y  S  L  C  S  K  E  I  L  C  R  *  W  I  W  A  T  V  *  K  T  P  S  I  L  P  *  G  T  W  S  *  I  *  F  C  L  W  F  E  T  S  I  H  G  S   : G  *  C  S  S  T  L  R  Y  G  R  S  A  A  F  A  C  S  F  G  L  *  T  R  Q  C  K  W  L  P  L  W  R  C  I  W  *  Q  :  *  T  R  E  I  K  S  W  I  W  R  Q  Q  E  L  H  F  *  A  R  F  S  W  D  I  Q  Q  S  S  G  Y  G  L  W  W  R :   F  L  W  W  K  *  C  R  W  I  V  F  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47492" stop="47460"/>
                    <exon start="43086" stop="42865"/>
                    <exon start="42789" stop="42489"/>
                    <exon start="42399" stop="42086"/>
                    <exon start="41994" stop="41882"/>
                    <exon start="41790" stop="41684"/>
                    <exon start="41595" stop="41552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLWERGRFQRRVKTVFIDGLAVSWNEDHVRELLKEYGKIRKVELARNRPSAKRKDFGFVTFDTHEAAVTCAKSINNEEFGEGDNKVKVRARLSRPLHMGRGKYGGRGEFRPWRMPMHGSHAPWGRTVPYSRSIRGTRVSTRMPPVVSRGFKRPTALRDRHAEMALSPRGRSMASPPRRSYDRRPPVSSYPKSNFKRDYGRREEISPSRSRAIPEYPSRVHSDRRISYRDEYSSRGSGYPELPRGTHSAARRSYVDDGYGQRFERPPPSYREGRGREYDSVSGSKRPYMAVDDVHPHYAMAGVRHSRARLDYELGSASGSHYGDAYGDSRLGRSNLGYGGNRSSISRQDSHGIYSSRQGMDYGGGSYGGSDVGGLYSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="46930" e_stop="46280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="46930" e_stop="46280" e_length="651"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46930" stop="46280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331699" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTACCCCTTTTACGTCAACTTTTAGTTTCTTTCTTGTTCTTTTTCCCAGAATGTAAATATTAAAGCAAAATCACAATATTAGTTTGACAAGATAGATGATAGATGGAAGTTACGGAATGTTAGTACAATGTTACCGGTTTGTCTTTTGTTACACTTCTTCATGTATATATATTGCTGCATGACAAATTAAATACTCCCTCCGTATAAATACTTTTTATGATCTTTTTACTTTTTTGGCTACACATTAATTTCAACTTTTCACGTGGCATGTTTAAAGCTACAAGATTAAAGGAAATTTTTGTACTTTTGACATAACTATTATTTAGGATCACCAAATTGAAAAGTCTTTTTTGTAAACTCTGCATCAAGTCAAACTATGTCATTCTTTTTGAAATTGAGGGAGTAACTTTTAAAATTTTAATGTGAACTTAAATCAATTTGAACTATTATTGAGTATTCTATGGATGAAAAACACTATATTTCATTTGATGTTTCTTTTACCCAATCACGGGAAGGAAACAGAAAAAGGTTTTGATAACATTACATAGAGAAAAAAAGTATAATTGTCTTATTATTTCCTCTTCCGTTATCGTCTTAAAAGCAAAACAATGTTCTCTTGCAATATTGAAAAGTCACACTGCAATATCATG</gDNA_template>
            <first_frame> F  T  P  F  T  S  T  F  S  F  F  L  V  L  F  P  R  M  *  I  L  K  Q  N  H  N  I  S  L  T  R  *  M  I  D  G  S  Y  G  M  L  V  Q  C  Y  R  F  V  F  C  Y  T  S  S  C  I  Y  I  A  A  *  Q  I  K  Y  S  L  R  I  N  T  F  Y  D  L  F  T  F  L  A  T  H  *  F  Q  L  F  T  W  H  V  *  S  Y  K  I  K  G  N  F  C  T  F  D  I  T  I  I  *  D  H  Q  I  E  K  S  F  L  *  T  L  H  Q  V  K  L  C  H  S  F  *  N  *  G  S  N  F  *  N  F  N  V  N  L  N  Q  F  E  L  L  L  S  I  L  W  M  K  N  T  I  F  H  L  M  F  L  L  P  N  H  G  K  E  T  E  K  G  F  D  N  I  T  *  R  K  K  V  *  L  S  Y  Y  F  L  F  R  Y  R  L  K  S  K  T  M  F  S  C  N  I  E  K  S  H  C  N  I  M </first_frame>
            <second_frame>  L  P  L  L  R  Q  L  L  V  S  F  L  F  F  F  P  E  C  K  Y  *  S  K  I  T  I  L  V  *  Q  D  R  *  *  M  E  V  T  E  C  *  Y  N  V  T  G  L  S  F  V  T  L  L  H  V  Y  I  L  L  H  D  K  L  N  T  P  S  V  *  I  L  F  M  I  F  L  L  F  W  L  H  I  N  F  N  F  S  R  G  M  F  K  A  T  R  L  K  E  I  F  V  L  L  T  *  L  L  F  R  I  T  K  L  K  S  L  F  C  K  L  C  I  K  S  N  Y  V  I  L  F  E  I  E  G  V  T  F  K  I  L  M  *  T  *  I  N  L  N  Y  Y  *  V  F  Y  G  *  K  T  L  Y  F  I  *  C  F  F  Y  P  I  T  G  R  K  Q  K  K  V  L  I  T  L  H  R  E  K  K  Y  N  C  L  I  I  S  S  S  V  I  V  L  K  A  K  Q  C  S  L  A  I  L  K  S  H  T  A  I  S   </second_frame>
            <third_frame>   Y  P  F  Y  V  N  F  *  F  L  S  C  S  F  S  Q  N  V  N  I  K  A  K  S  Q  Y  *  F  D  K  I  D  D  R  W  K  L  R  N  V  S  T  M  L  P  V  C  L  L  L  H  F  F  M  Y  I  Y  C  C  M  T  N  *  I  L  P  P  Y  K  Y  F  L  *  S  F  Y  F  F  G  Y  T  L  I  S  T  F  H  V  A  C  L  K  L  Q  D  *  R  K  F  L  Y  F  *  H  N  Y  Y  L  G  S  P  N  *  K  V  F  F  V  N  S  A  S  S  Q  T  M  S  F  F  L  K  L  R  E  *  L  L  K  F  *  C  E  L  K  S  I  *  T  I  I  E  Y  S  M  D  E  K  H  Y  I  S  F  D  V  S  F  T  Q  S  R  E  G  N  R  K  R  F  *  *  H  Y  I  E  K  K  S  I  I  V  L  L  F  P  L  P  L  S  S  *  K  Q  N  N  V  L  L  Q  Y  *  K  V  T  L  Q  Y  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0057G01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="53061" PGL_stop="53583"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53061" e_stop="53583"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="53061" e_stop="53583" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53061" stop="53583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCGACGGATCGTCATGGTCACGATGGACCATCATGGACTCCGTCGTCCCATACTTATGCAATTTCATCAGCTGCTCTTCTTCATTCCCTCGACGGCAATTATGACGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTTCAAAACACTTAAACTCTTGAAATATGGGTACTGGGATCACTTCTCTGAACTTCATGACGAACCTGCAAGATGGACCGTCATAGACATAACAGACCGTCACAAGCTTCGTAACCCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAATCACGACGGACCATCATAAGTTCCGTAGGTGGTCTCTTCTGCATTTTTTCGCTCAAAATCTGCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAATAAACTTATATAAAAATTAGCACAAAAAGGGTTTTGGACACACTAATCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCA</gDNA_template>
            <first_frame> S  R  R  I  V  M  V  T  M  D  H  H  G  L  R  R  P  I  L  M  Q  F  H  Q  L  L  F  F  I  P  S  T  A  I  M  T  D  R  H  R  H  N  G  P  S  R  A  F  V  S  K  H  L  N  S  *  N  M  G  T  G  I  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  *  T  *  Q  T  V  T  S  F  V  T  P  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  I  T  I  T  T  D  H  H  K  F  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  N  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  S  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  </first_frame>
            <second_frame>  R  D  G  S  S  W  S  R  W  T  I  M  D  S  V  V  P  Y  L  C  N  F  I  S  C  S  S  S  F  P  R  R  Q  L  *  R  T  V  I  G  T  T  V  R  R  G  P  S  F  Q  N  T  *  T  L  E  I  W  V  L  G  S  L  L  *  T  S  *  R  T  C  K  M  D  R  H  R  H  N  R  P  S  Q  A  S  *  P  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  S  R  R  T  I  I  S  S  V  G  G  L  F  C  I  F  S  L  K  I  C  A  F  S  F  G  Q  I  S  C  K  I  K  I  N  L  Y  K  N  *  H  K  K  G  F  G  H  T  N  L  K  E  K  V  L  I  I  P  *  N  H  G  I  S </second_frame>
            <third_frame>   A  T  D  R  H  G  H  D  G  P  S  W  T  P  S  S  H  T  Y  A  I  S  S  A  A  L  L  H  S  L  D  G  N  Y  D  G  P  S  *  A  Q  R  S  V  E  G  L  R  F  K  T  L  K  L  L  K  Y  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  R  W  T  V  I  D  I  T  D  R  H  K  L  R  N  P  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  H  H  N  H  D  G  P  S  *  V  P  *  V  V  S  S  A  F  F  R  S  K  S  A  H  S  A  L  D  R  F  P  A  K  *  K  *  T  Y  I  K  I  S  T  K  R  V  L  D  T  L  I  L  R  K  K  Y  *  *  Y  R  E  T  T  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53180" stop="53410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRFKTLKLLKYGYWDHFSELHDEPARWTVIDITDRHKLRNPTLGQTSPSSFSSCTTLPPTDHHNHDGPS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53298" stop="53504"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTVTSFVTPHLVRLPHLPSAAALRCHLRTITITTDHHKFRRWSLLHFFAQNLRIQLWTDFLQNKNKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="61783" PGL_stop="60950"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61783" e_stop="60950"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.923">
            <gDNA_exon_boundary e_start="61783" e_stop="60950" e_length="834"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61783" stop="61378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61428" stop="61191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61427" stop="60950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATCTTCGGTGGAGGTAGGTTATGGTTTTTCTCTTATGATATTCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTTTATGCTTGCATGAATGTAATTATATAATTGTGATGAAATAAGCATGATGAAGTTATTGAATCCCAAATCTTGCAAAATCCTAATCTCTTGTTATTGATGATGCATTGGTATAAAAGAAGGCTTGATGAACTAAAGTAATGAGATTAATGATGCCTTGGTATAAGAGAAGGCTTGATGAATAGATAGAATGAGATTAGGGAATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTACATTTAGGAGAACGGAGTGTCACGTACCGACACAAGAGAATTAATGAATATGAGGGAGCGGAGTGTCACGTGCCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCTATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTATTAATGATATAGTACTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTATGATATTACTTGTTATATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCTTCTTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTTGTCTTCAACCCAACAGTAATTCTAGCCAGTCTTCGTCACACCAGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> *  S  S  V  E  V  G  Y  G  F  S  L  M  I  F  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  L  C  L  H  E  C  N  Y  I  I  V  M  K  *  A  *  *  S  Y  *  I  P  N  L  A  K  S  *  S  L  V  I  D  D  A  L  V  *  K  K  A  *  *  T  K  V  M  R  L  M  M  P  W  Y  K  R  R  L  D  E  *  I  E  *  D  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  R  H  V  H  L  G  E  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  Y  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  M  I  L  L  V  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  C  F  L  L  C  Y  L  W  S  A  A  N  V  P  L  S  S  T  Q  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  L  M  L  L  A  W  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  L  L  *  Y  S  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  F  Y  A  C  M  N  V  I  I  *  L  *  *  N  K  H  D  E  V  I  E  S  Q  I  L  Q  N  P  N  L  L  L  L  M  M  H  W  Y  K  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  I  R  E  G  L  M  N  R  *  N  E  I  R  E  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  Y  I  *  E  N  G  V  S  R  T  D  T  R  E  L  M  N  M  R  E  R  S  V  T  C  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  Y  *  *  Y  S  T  C  C  C  Y  M  L  S  I  I  V  D  L  *  Y  Y  L  L  Y  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  F  F  V  I  C  G  V  Q  Q  T  C  R  C  L  Q  P  N  S  N  S  S  Q  S  S  S  H  Q  I  F  R  V  S  *  C  F  *  L  G   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  F  M  L  A  *  M  *  L  Y  N  C  D  E  I  S  M  M  K  L  L  N  P  K  S  C  K  I  L  I  S  C  Y  *  *  C  I  G  I  K  E  G  L  M  N  *  S  N  E  I  N  D  A  L  V  *  E  K  A  *  *  I  D  R  M  R  L  G  N  R  V  S  R  T  D  M  *  I  *  G  I  G  C  H  E  P  T  R  T  F  R  R  T  E  C  H  V  P  T  Q  E  N  *  *  I  *  G  S  G  V  S  R  A  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  L  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  I  N  D  I  V  L  V  V  A  T  C  *  V  S  *  L  I  Y  D  I  T  C  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  M  F  S  S  L  L  F  V  E  C  S  K  R  A  V  V  F  N  P  T  V  I  L  A  S  L  R  H  T  R  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0057G01.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61169" stop="60972"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIYDITCYILFSILSWPMISTQYPCFVLTPTFMFSSLLFVECSKRAVVFNPTVILASLRHTRSSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 190 chains have been computed
$ 
$ memory statistics:
$ 115736 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 2967 bytes was the average size of a spliced alignment
$ 15936 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1770 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 228 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:03:54
-->
