<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-03 21:06:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E556741" ref_strand="-" ref_description="SGN-E556741 [cTSD-4-H15]">
      <seq>attcactccttcaactccattggaccccaantcaccaccttcgggcgggtactatctctcccctccaactttccctacacctagtacccccggtatacccacatttttcccaccaactactcctatcatcaacccgggcatcccaggcacccccggtatctacatacctccacctctattcgatcctaactcaccacctttctcaatcgattactggaggactaacccggctttaatatgggccttgtgtggctggtgggcaactattggtagtgcatttggtgtagctcctgctccggggctcggatcaaacttcaacctcctacaagcacttacaaacactcgttccgatggtgttggtgaactctacagggaaggcacagcttctttactgaactcaatggtgaacaagaagtttccttatactacaaaacaagttagggaaaattttgttgcagcacttagttcaaacaaggctgctgcagctcaggcagcgcgatttaagttagcaaacgagggtagattcaagcgtagagcttgaaatgaaggctcgtatcaataattctgattctacgtatggacattttctcatcactacttcgttcattcgcaatagtaaatgtatgcaactaaggtatcctaacagatcagtagagcttgaactttggttcatgtttcaaaaatcaccttaaaaatcttgcaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="1" stop="1212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128" g_stop="337" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="338" i_stop="414" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="415" g_stop="912" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="708" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E556741" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556741" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="128" e_stop="337"/>
          <exon e_start="415" e_stop="912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACTCCTTCAACTCCATTTGACCCCAATTCACCACCTTCGGGCGGGTACTATCTCTCCCCTCCAACTTTCCCTACACCTAGTACCCCCGGTATACCCACATTTTTCCCACCAACTACTCCTATCATCAACCCGGGCATCCCAGGCACCCCCGGTATCTACATACCTCCACCTCTATTCGATCCTAACTCACCACCTTTCTCAATCGAGTAAGTAAATCACATTACACAACTCCCTTCAGGTACATTCGATAACATATTAACACGAACCATGAATTTTTTTGTAGTTACTGGAGGACTAACCCGGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACATTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAACAGATCAGTAGAGCTTGAACTTTGGTTCATGTTTCAAAAATCACCTTAAAAATCTTGCAAGTATG</genome_strand>
        <mrna_strand>ATTCACTCCTTCAACTCCATTGGACCCCAANTCACCACCTTCGGGCGGGTACTATCTCTCCCCTCCAACTTTCCCTACACCTAGTACCCCCGGTATACCCACATTTTTCCCACCAACTACTCCTATCATCAACCCGGGCATCCCAGGCACCCCCGGTATCTACATACCTCCACCTCTATTCGATCCTAACTCACCACCTTTCTCAATCGA.............................................................................TTACTGGAGGACTAACCCGGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACATTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAACAGATCAGTAGAGCTTGAACTTTGGTTCATGTTTCAAAAATCACCTTAAAAATCTTGCAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319731" ref_strand="+" ref_description="SGN-E319731 [cTOB-12-A4]">
      <seq>ggctttaatatgggccttgtgtggctggtgggcaactattggtagtgcatttggtgtagctcctgctccggggctcggatcaaacttcaacctcctacaagcacttacaaacactcgttccgatggtgttggtgaactctacagggaaggcacagcttctttactgaactcaatggtgaacaagaagtttccttatactacaaaacaagttagggaaaattttgttgcagcacttagttcaaacaaggctgctgcagctcaggcagcgcgatttaagttagcaaacgagggtagattcaagcgtagagcttgaaatgaaggctcgtatcaataattctgattctacgtatggacattttctcatcactacttcgttcattcgcaatagtaaatgtatgcaactaaggtatcctaacagatcagtagagcttgaactttggttcatgtttcaaaaatcaccttaaaaatcttgcaagtatgttaagtttcattatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="133" stop="1228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="433" g_stop="928" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E319731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="433" e_stop="928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACATTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAACAGATCAGTAGAGCTTGAACTTTGGTTCATGTTTCAAAAATCACCTTAAAAATCTTGCAAGTATGTTAAGTTTCATTATGA</genome_strand>
        <mrna_strand>GGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACATTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAACAGATCAGTAGAGCTTGAACTTTGGTTCATGTTTCAAAAATCACCTTAAAAATCTTGCAAGTATGTTAAGTTTCATTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542457" ref_strand="+" ref_description="SGN-E542457 [TUS-63-M11](-)">
      <seq>gttaagggaaaatattaaaggattttgtagggctgttgcttctgatatctactttgaacccatataatatatagtctctaatttcagtttttgaatttttttttttatatactggcaaataggataagaatggtgaattggtaacaatatttacagcttaatgactttgaacttatagaatctacacaattgaagaatttcaatttatctttataaaagtatgtccaaacaggaaaaatataacagattcgggttaaacgtcacttttggttcctcgattattgataaattcgatttaacttttgatctcattgcttatgaatattcacgaatttttggaattgattataggtccacctttaaaattttaaaaatctatttgttactacacatttttcataaatcttgatacttgaggttttgatcactatttactctaggtaattcaattttcgaactaatatatacataatatcaaacttttgtattatcaaaaaaacttgatatgttagaaatgataatctatttttgataacgtagataagtaaaattaaatagaggaaataatgattttttcttgactattacatcaattttcaacttgtttgagactcatttgaaggacttgtaacttaagttcgagccatatgcatgcgaactaagcttggtatttaagcgtaaaagggtagagaggcgagcccattatcctcaagttttgaaggttgcggttagttctaagaagtgactccgagatgaatttctctattataaaaaaaaaagcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="2411" stop="1019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2111" g_stop="1320" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="791" r_length="791" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E542457" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2111" e_stop="1320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAGGGAAAATATTAAAGGAATTTTGTAGGGCTGTTGCTTCTGATATCTTACTTTGAA-CCATATAATATATAGTCTCTAATTTCAGTTTTTGAATTTTTTTTTTTTATATACTGGCAAATAGGATAAGAATGGTGAATTGGTAACAATATTTACAGCTTAATGACTTTGAACTTATAGAATCTACACAATTGAAGAATTTCAATTTATCTTTATAAAAGTATGTCCAAACAGGAAAAATATAACAGATTCGGGTTAAACGTCACTTTTGGTTCCTCGATTATTGATAAATTCGATTTAACTTTTGATCTCATTGCTTATGAATATTCACGAATTTTTGGAATTGATTATAGGTCCACCTTTAAAATTTTAAAAATCTATTTGTTACTACACATTTTTCATAAATCTTGATACTTGAGGTTTTGATCACTATTTACTCTAGGTAATTCAATTTTCGAACTAATATATACATAATATCAAACTTTTGTATTATCAAAAAAACTTGATATGTTAGAAATGATAATCTATTTTTGATAACGTAGATAAGTAAAATTAAATAGAGGAAATAATGATTTTTTCTTGACTATTACATCAATTTTCAACTTGTTTGAGACTCATTTGAAGGACTTGTAACTTAAGTTCGAGCCATATGCATGCGAACTAAGCTTGGTATTTAAGCGTAAAAGGGTAGAGAGGCGAGCCCATTATCCTCAAGTTTTGAAGGTTGCGGTTAGTTCTAAGAAGTGACTCC-AGATGAATTTCTCTATTATAAAAAAAAAAGCAAAAAGAAAA</genome_strand>
        <mrna_strand>GTTAAGGGAAAATATTAAAGG-ATTTTGTAGGGCTGTTGCTTCTGATATC-TACTTTGAACCCATATAATATATAGTCTCTAATTTCAGTTTTTGAA-TTTTTTTTTTTATATACTGGCAAATAGGATAAGAATGGTGAATTGGTAACAATATTTACAGCTTAATGACTTTGAACTTATAGAATCTACACAATTGAAGAATTTCAATTTATCTTTATAAAAGTATGTCCAAACAGGAAAAATATAACAGATTCGGGTTAAACGTCACTTTTGGTTCCTCGATTATTGATAAATTCGATTTAACTTTTGATCTCATTGCTTATGAATATTCACGAATTTTTGGAATTGATTATAGGTCCACCTTTAAAATTTTAAAAATCTATTTGTTACTACACATTTTTCATAAATCTTGATACTTGAGGTTTTGATCACTATTTACTCTAGGTAATTCAATTTTCGAACTAATATATACATAATATCAAACTTTTGTATTATCAAAAAAACTTGATATGTTAGAAATGATAATCTATTTTTGATAACGTAGATAAGTAAAATTAAATAGAGGAAATAATGATTTTTTCTTGACTATTACATCAATTTTCAACTTGTTTGAGACTCATTTGAAGGACTTGTAACTTAAGTTCGAGCCATATGCATGCGAACTAAGCTTGGTATTTAAGCGTAAAAGGGTAGAGAGGCGAGCCCATTATCCTCAAGTTTTGAAGGTTGCGGTTAGTTCTAAGAAGTGACTCCGAGATGAATTTCTCTATTATAAAAAAAAAAGCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E542459" ref_strand="+" ref_description="SGN-E542459 [TUS-63-M11]">
      <seq>gtatcctattctgtccatgatggcacgcaatattctaggaatgccaatgtcaaaagcttcactagagtatgtgttcaacactggtaataaggctcttgaaccatatcgcagttcgctaagatcagataccttgcaagctttgatgtgtgcccaggattggatgcgtgatgaatttgaagattcgaaggcttcatcaagcaccgtcactctggccttgtgctatgatgcaaaataagagcaagtctttggtaagcttaggttgtcattcttttgcgtttatctgtgtatattagcacctaccaaacagtccccctctctctatccttgtgttaagattttgtagaaattagttcatttgcagattttgcttttccagagctcccataaattagttcaagacgagttcttttgttcaagaatctaacagcttattgccatctttagcctccatcaattgactaacttatctgtatctacttctcttttctgttctgtccattctcgtttgaggttctttacggtattgatctgtcaaggatcattccgaattagtgttaactcatatgatcattatggtcttggtttgttcatctgagccagatgaaagaaaaaatttcgaggtattcttggatttttgcagctttcatgcccacgccccagccctaccgcgatatggtattgtctgctgtttagtatttctcagcctcttgagttgtggacattacagcctaatatggttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3255" stop="1831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2955" g_stop="2777" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2776" i_stop="2695" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2694" g_stop="2131" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="741" r_length="562" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E542459" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E542459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2955" e_stop="2777"/>
          <exon e_start="2694" e_stop="2131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCCTATTCTGTCCATGATGGCACGCAATATTCTAGGAATGCCAATGTCAAAAGCTTCACTAGAGTATGTGTTCAACACTGGTAATAAGGCTCTTGAACCATATCGCAGTTCGCTAAGATCAGATACCTTGCAAGCTTTGATGTGTGCCCAGGATTGGATGCGTGATGAATTTGAAGGTGAATATATAATTGATTAGTTCACAATTTTGACATATTCCATATTAGCTATAAAGAATAACTCTGAATCTTTCTTCAACAGATTCGAAGGCTTCATCAAGCACCGTCACTCTGGCCTTGTGCTATGATGCAAAATAAGAGCAAGTCTTTGGTAAGCTTAGGTTGTCATTCTTTTGCGTTTATCTGTGTATATTAGCACCTACCAAACAGTCCCCCTCTCTCTATCCTTGTGTTAAGATTTTGTAGAAATTAGTTCATTTGCAGATTTTGCTTTTCCAGAGCTCCCATAAATTAGTTCAAGACGAGTTCTTTTGTTCAAGAATCTAACAGCTTATTGCCATCTTTAGCCTCCATCAATTGACTAACTTATCTGTATCTACTTCTCTTTTCTGTTCTGTCCATTCTCGTTTGAGGTTCTTTACGGTATTGATCTGTCAAGGATCATTCCGAATTAGTGTTAACTCATATGATCATTATGGTCTTGGTTTGTTCATCTGAGCCAGATGAAAGAAAAAATTTCGAGGTATTCTTGGATTTTTGCAGCTTTCATGCCCACGCCCCAGCCCTACCGCGATATGGTATTGTCTGCTGTTTAGTATTTCTCAGCCTCTTGAGTTGTGGACCATTACAGCCTAATAATGGTTGA</genome_strand>
        <mrna_strand>GTATCCTATTCTGTCCATGATGGCACGCAATATTCTAGGAATGCCAATGTCAAAAGCTTCACTAGAGTATGTGTTCAACACTGGTAATAAGGCTCTTGAACCATATCGCAGTTCGCTAAGATCAGATACCTTGCAAGCTTTGATGTGTGCCCAGGATTGGATGCGTGATGAATTTGAAG..................................................................................ATTCGAAGGCTTCATCAAGCACCGTCACTCTGGCCTTGTGCTATGATGCAAAATAAGAGCAAGTCTTTGGTAAGCTTAGGTTGTCATTCTTTTGCGTTTATCTGTGTATATTAGCACCTACCAAACAGTCCCCCTCTCTCTATCCTTGTGTTAAGATTTTGTAGAAATTAGTTCATTTGCAGATTTTGCTTTTCCAGAGCTCCCATAAATTAGTTCAAGACGAGTTCTTTTGTTCAAGAATCTAACAGCTTATTGCCATCTTTAGCCTCCATCAATTGACTAACTTATCTGTATCTACTTCTCTTTTCTGTTCTGTCCATTCTCGTTTGAGGTTCTTTACGGTATTGATCTGTCAAGGATCATTCCGAATTAGTGTTAACTCATATGATCATTATGGTCTTGGTTTGTTCATCTGAGCCAGATGAAAGAAAAAATTTCGAGGTATTCTTGGATTTTTGCAGCTTTCATGCCCACGCCCCAGCCCTACCGCGATATGGTATTGTCTGCTGTTTAGTATTTCTCAGCCTCTTGAGTTGTGGA-CATTACAGCCTAAT-ATGGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E302326" ref_strand="+" ref_description="SGN-E302326 [cLEW-19-L20]">
      <seq>tatcctattctgtccatgatggcacgcaatattctaggaatgccaatgtcaaaagcttcactagagtatgtgttcaacactggtaataaggctcttgaaccatatcgcagttcgctaagatcagataccttgcaagctttgatgtgtgcccaggattggatgcgtgatgaatttgaagattcgaaggcttcatcaagcaccgtcactctggccttgtgctatgatgcaaaataagagcaagtctttggtaagcttaggttgtcattcttttgcgtttatctgtgtatattagcacctaccaaacagtccccctctctctatccttgtgttaagattttgtagaaattagttcatttgcagattttgcttttccagagctcccataaattagttcaagacgagttcttttgttcaagaatctaacagcttattgccatctttagcctccatcaattgactaacttatctgtatctacttctcttttctgttctgtccattctcgtttgaggttctttacggtattgatctgtcaaggatcattccgaattagtgttaactcatatgatcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3254" stop="2000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2954" g_stop="2777" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2776" i_stop="2695" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2694" g_stop="2300" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="573" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E302326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2954" e_stop="2777"/>
          <exon e_start="2694" e_stop="2300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCTATTCTGTCCATGATGGCACGCAATATTCTAGGAATGCCAATGTCAAAAGCTTCACTAGAGTATGTGTTCAACACTGGTAATAAGGCTCTTGAACCATATCGCAGTTCGCTAAGATCAGATACCTTGCAAGCTTTGATGTGTGCCCAGGATTGGATGCGTGATGAATTTGAAGGTGAATATATAATTGATTAGTTCACAATTTTGACATATTCCATATTAGCTATAAAGAATAACTCTGAATCTTTCTTCAACAGATTCGAAGGCTTCATCAAGCACCGTCACTCTGGCCTTGTGCTATGATGCAAAATAAGAGCAAGTCTTTGGTAAGCTTAGGTTGTCATTCTTTTGCGTTTATCTGTGTATATTAGCACCTACCAAACAGTCCCCCTCTCTCTATCCTTGTGTTAAGATTTTGTAGAAATTAGTTCATTTGCAGATTTTGCTTTTCCAGAGCTCCCATAAATTAGTTCAAGACGAGTTCTTTTGTTCAAGAATCTAACAGCTTATTGCCATCTTTAGCCTCCATCAATTGACTAACTTATCTGTATCTACTTCTCTTTTCTGTTCTGTCCATTCTCGTTTGAGGTTCTTTACGGTATTGATCTGTCAAGGATCATTCCGAATTAGTGTTAACTCATATGATCATTAT</genome_strand>
        <mrna_strand>TATCCTATTCTGTCCATGATGGCACGCAATATTCTAGGAATGCCAATGTCAAAAGCTTCACTAGAGTATGTGTTCAACACTGGTAATAAGGCTCTTGAACCATATCGCAGTTCGCTAAGATCAGATACCTTGCAAGCTTTGATGTGTGCCCAGGATTGGATGCGTGATGAATTTGAAG..................................................................................ATTCGAAGGCTTCATCAAGCACCGTCACTCTGGCCTTGTGCTATGATGCAAAATAAGAGCAAGTCTTTGGTAAGCTTAGGTTGTCATTCTTTTGCGTTTATCTGTGTATATTAGCACCTACCAAACAGTCCCCCTCTCTCTATCCTTGTGTTAAGATTTTGTAGAAATTAGTTCATTTGCAGATTTTGCTTTTCCAGAGCTCCCATAAATTAGTTCAAGACGAGTTCTTTTGTTCAAGAATCTAACAGCTTATTGCCATCTTTAGCCTCCATCAATTGACTAACTTATCTGTATCTACTTCTCTTTTCTGTTCTGTCCATTCTCGTTTGAGGTTCTTTACGGTATTGATCTGTCAAGGATCATTCCGAATTAGTGTTAACTCATATGATCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E392990" ref_strand="+" ref_description="SGN-E392990 [TUS-37-I5]">
      <seq>cccggaagtgtctgaatcttgataattcattttattggaactcaacttatatcatggttgaaactgctttggagtacaaagacgcatttcctcttttgcaagaacaagattctcggtatgcaatgtgtccaactgtgacagagtgggataggataagtgccattgctagcttcctaaagctctttgttgaggtttccaatgtttttgcgggaagcaagtatcctacggcaaatacatatttcccagatatctgtgatattcacttgcagttgattgagtggtgtcaaaactcagatgattttgttaattctttggctctaaagttgaaaagcagatttgatgagtactggaaaaaatgtagcttggctttggcgattgcagctatcttagacccgagatttaagatgcaattggttaaatattattatccacaaatatacggtgatagtgctccagactgcattaatattgtttcagattgtatgaaggctctgtataatggccatgctatttattcaccattaacccctaatggtcagcctgaaacatctcaagttggtggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3976" stop="2812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3676" g_stop="3112" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E392990" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3676" e_stop="3112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTATCCACAAATATACGGTGATAGTGCTCCAGACTGCATTAATATTGTTTCAGATTGTATGAAGGCTCTGTATAATGGCCATGCTATTTATTCACCATTAGCCCCTAATGGTCAAGCTGAAGCATCTCAAGTTGGTGGTGT</genome_strand>
        <mrna_strand>CCCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTATCCACAAATATACGGTGATAGTGCTCCAGACTGCATTAATATTGTTTCAGATTGTATGAAGGCTCTGTATAATGGCCATGCTATTTATTCACCATTAACCCCTAATGGTCAGCCTGAAACATCTCAAGTTGGTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239695" ref_strand="+" ref_description="SGN-E239695 [cLED-33-G6]">
      <seq>ccggaagtgtctgaatcttgataattcattttattggaactcaacttatatcatggttgaaactgctttggagtacaaagacgcatttcctcttttgcaagaacaagattctcggtatgcaatgtgtccaactgtgacagagtgggataggataagtgccattgctagcttcctaaagctctttgttgaggtttccaatgtttttgcgggaagcaagtatcctacggcaaatacatatttcccagatatctgtgatattcacttgcagttgattgagtggtgtcaaaactcagatgattttgttaattctttggctctaaagttgaaaagcagatttgatgagtactggaaaaaatgtagcttggctttggcgattgcagctatcttagacccgagatttaagatgcaattggttaaatattattatccacaaatatacggtgatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3975" stop="2928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3675" g_stop="3228" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E239695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3675" e_stop="3228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTATCCACAAATATACGGTGATAGT</genome_strand>
        <mrna_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTATCCACAAATATACGGTGATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231726" ref_strand="+" ref_description="SGN-E231726 [cLED-4-P13]">
      <seq>ccggaagtgtctgaatcttgataattcattttattggaactcaacttatatcatggttgaaactgctttggagtacaaagacgcatttcctcttttgcaagaacaagattctcggtatgcaatgtgtccaactgtgacagagtgggataggataagtgccattgctagcttcctaaagctctttgttgaggtttccaatgtttttgcgggaagcaagtatcctacggcaaatacatatttcccagatatctgtgatattcacttgcagttgattgagtggtgtcaaaactcagatgattttgttaattctttggctctaaagttgaaaagcagatttgatgagtactggaaaaaatgtagcttggctttggcgattgcagctatcttagacccgagatttaagatgcaattggttaaatattatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3975" stop="2950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3675" g_stop="3250" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="426" r_length="426" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E231726" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3675" e_stop="3250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTA</genome_strand>
        <mrna_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396083" ref_strand="+" ref_description="SGN-E396083 [TUS-19-C7]">
      <seq>cccggaagtgtcggaatcttgataattcattttattggaactcaacttatatcatggttgaaactgctttggagggcaaagacgcatttcctcttttgcaagaacaagattctcggtatgcaatgtgtccaactgtgacagagtgggataggataagtgccattgctagcttcctaaagctctttgttgaggtttccaatgtttttgcgggaagcaagtatcctacggcaaatacatatttcccagatatctgtgatattcacttgcaggtgagtgagtggtgtctaaactcttatgagtgggggggggggctttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3976" stop="3077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3676" g_stop="3380" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E396083" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3676" e_stop="3380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATG</genome_strand>
        <mrna_strand>CCCGGAAGTGTCGGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGGGCAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGGTGAGTGAGTGGTGTCTAAACTCTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237629" ref_strand="+" ref_description="SGN-E237629 [cLED-19-K5]">
      <seq>ccggaagtgtctgaatcttgataattcattttattggaactcaacttatatcatggttgaaactgctttggagtacaaagacgcatttcctcttttgcaagaacaagattctcggtatgcaatgtgtccaactgtgacagagtgggataggataagtgccattgctagcttcctaaagctctttgttgaggtttccaatgtttttgcgggaagcaagtatcctacggcaaatacatatttcccagatatctgtgatattcacttgcagttgattgagtggtgtcaaaactcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="3975" stop="3080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3675" g_stop="3380" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E237629" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>296</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3675" e_stop="3380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATG</genome_strand>
        <mrna_strand>CCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324655" ref_strand="+" ref_description="SGN-E324655 [cTOC-9-F17]">
      <seq>aacaacgccggaaaaggtcttcaattctcgggtggctacaatactggaagcaatggaaatagaggaagaagcagtcatagtcaattctagtaggctaaaatctgttgtgtggaatgactttgatagagtaaaaaaaggtgatacttttgtggctatctgtagacactgtaaaaggaaacttagtgggtctagtaccagtgggacttcacatttgagaaatcatttgatcagatgtcgtaggagatcaaaccatgatataagtcagttactgacacggggaaagaaaaaggagggacctcttgccatctcgaattttagttttgatcaagagcagagaaatggtgatgcagtcagcgttgtgaggactaagtttgaacaaagacacacaagagatgggttattcaacaatggaattgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="7591" stop="4065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7291" g_stop="7263" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7262" i_stop="4754" i_length="2509">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.709" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4753" g_stop="4365" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="418" r_length="389" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E324655" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7291" e_stop="7263"/>
          <exon e_start="4753" e_stop="4365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAACGCCGGAAAAGTTCTTCAATTCTCGTAAGTTTCTCTCTCTTACAGAGTTTCTCTCTCCTGTTTACGCCATAGATGGTTGTGTTGTTGTTTAGAATTGGAACTGTCGATATATATGTTGAAAAACCCGAAGTCCGAATGAATTTTGGGTTGTATGTATGTGTTCTCGATCCGATGTCTATAGGGTTTTAATTATTCTGCTTCTTCGACCCGACTTTTTTCCTTTTTTTTTTAATCTGTAACCTAATATGGATCGGATATGGGTTCGGGTTACTGGGTCGTGGTGACCCGGTTTGGGGAGTGTAGAATTGGGTAGTGGGTATTGGGTTGAGCTTTTTACTCTTTGAATTTTGAATTTGGAGCATTAATTTGTGCTTAAAGTTTTTGATTTGCGTGTAATGTTGTGCTTTGGAAGTATTGCACTTGAGCAGAGGGTGTTTGGTAAAAAGACTCTCTGTGTAGACTGTACCATCTCTGGGCTGCACTTGTGGGATTATTACTAAGTATGTTGTTGTTGTTGTTGTTGTGCTTTGTGAATTAATGAGTAATTTTGGTGTTTTGTTGGTTAGAATTTCGTTAGTGGGTAGTTTAATTATGTATTTCTTTTTGTTGTCTTTAGTGGTTTTGAGTATTCATATGAAGCATAATGTATTAGATAACTTTGTCTACCGAGGCTTTTATAACATACTTGTTGAATTTTGCCGTTTAATATCTAATTTGTGGTTGAAGTTTCCATCTTTGGTTTGCAAACAATGTTGTGCTTTGTAAATTCACGAGTAAGTTTGGTGTTCTGTTGGCTAGAATTGCGCGAGTGCATAGTTTTATAAATTAATTCTTGTTGTCTTTCATGGTATTGAGGATTCATATGAAGCAGAATGTACTTGGTTTACAACATACTTGTTGAATTTTGCCATTCAACCTTCTAATTGTGGTTAATGTTTCCTTCTTTGGTTTGTGAACAATGTTGTGCTTTGTAAATTAACGAGTAATTATGGTGTGTTCTGTTGACTAGAATTTCAGGGGTGTGAAGTTTTATTAAAATTTTCTTCTTCTCGTCTTTGGTGTGATTAAGGATTCATATGGGGTCGAATGTACACGGTAACTACATTCACCAAGGATTTTACAAATTGTTGAATTATGCCTTTCAACATCTAATTTGTGGTTTAAGTTTCCGTCTTTGGTTTGTAAAACGATCTTGTGCTTTATAAATTGAAGAGGAATTTCAGTGATATGTTTGGCTTAGAATTTCTTAATCATAAATGTCTATCTTATTGTCTTATGTGGGTTTGAGGAATCATATGGAGCAAAGTGGATATTGATGTTCATATTGCTGACCCCAACTAGTTTGGATTAAAGTTATAGTTGCCTTGTATGGCCTTAGGTGGGTAATTTGAAACTCAAGGGTTATATATAGCAGCTTAATACACCCTCAGAAAAGCATTTGATAAAGCTGTATATTTTTTTGTAATGTGTGCATATTTGATAGTGTTATTTTGTAATGTAAATGGTACAGAAGTCTGATTTGATGTGATGTGTGCAAATGGGAGTTTTTCCGATGTAAATGGAAGAGAAGTTGGGTCTAGATTTATTGGTAGAATTAAAGTGTTTCTGTACTGTAAATGGTAGAGAAGTCTGGTTTGATGTGATGCGTGTGAATTTGATCTGTTTTTTTTGTAATGTAAATGGTAAAGAAGTCCGGTTTGATGTGATACATGTGAATTTGATCTGTTTTTTTGTAATGTAAATGGTACAAAAGTCCAGTTTGATGTGACGAATATGATCAGTATTTTTCGTAATGTAAATGGTAGAGAAGTCCGGTTTGATGTGATGTTTGCGAATTGGATAAGTGTAACTTAAATGATAGAGAACCAGGCTAGGCTTTTTGGTATCTTATATATACTGTGCCTCGCCCAAAAATTAGTAATATGTACCTATATTCTTTTTGACTATCCTAGCTTGAGGAATGGGCCTTAGTCATCTGTTTAGGTATGTGTCTAGAGTAACAGCTTAAAAGAACTAACTGCAGAAGTCACATAGCTAATGCAACATTGAAATATTTGAAGTTTTGAAAACTTTTGGCAACTAAAAAGAAAGCTCTGTCAATTAGTGAATTTTTTTTGTCACATTAGCACACCAGACTTGGTTTAACAGGCAGGTTTTGAACTTGTGACATTTGTATTTTGTTGGACTACGCTGGATATGTTTTTGTTGTTGTTCTTGTTGTATGCTTAGTATAGTTTTCGGGCTAAGGTGATTGAATTGAGTCCCTTCATGCAATATAGATGTACTTCCTTTTTCTCCCAAGTATTACTTATTATTTCTTTATTCAGACTTTTATAGAGGTTGGTTTTATGTGCAAGATATATGGCGTCTTTGTGCTTCTGTGATTGACACTATATTATCCCAATTGATAATTTGAAGAACTGTATGATTTTAATTAGTCTGTGTTATTGAAGCTTTGTTGTTTCTTCATTATTCTGGTTTAGATTTAATAAATTGTCTGTCATTTTCCTCACGTCACCTGAAAATATCCCAGGTATTGCTACAATACTGGAAGCAATGGAAATAGAGGAAGAAGCAGTCATAGTCAATTCTAGTAGGCTAAAATCTGTTGTGTGGAATGACTTTGATAGAGTAAAAAAAGGTGATACTTTTGTGGCTATCTGTAGACACTGTAAAAGGAAACTTAGTGGGTCTAGTACCAGTGGGACTTCACATTTGAGAAATCATTTGATCAGATGTCGTAGGAGATCAAACCATGATATAAGTCAGTTACTGACACGGGGAAAGAAAAAGGAGGGACCTCTTGCCATCTCGAATTTTAGTTTTGATCAAGAGCAGAGAAATGGTGATGCAGTCAGCGTTGTGAGGACTAAGTTTGAACAAGGACACACAAGAGATGGGTTATTCAACAATGGAATTGTT</genome_strand>
        <mrna_strand>AACAACGCCGGAAAAGGTCTTCAATTCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTGGCTACAATACTGGAAGCAATGGAAATAGAGGAAGAAGCAGTCATAGTCAATTCTAGTAGGCTAAAATCTGTTGTGTGGAATGACTTTGATAGAGTAAAAAAAGGTGATACTTTTGTGGCTATCTGTAGACACTGTAAAAGGAAACTTAGTGGGTCTAGTACCAGTGGGACTTCACATTTGAGAAATCATTTGATCAGATGTCGTAGGAGATCAAACCATGATATAAGTCAGTTACTGACACGGGGAAAGAAAAAGGAGGGACCTCTTGCCATCTCGAATTTTAGTTTTGATCAAGAGCAGAGAAATGGTGATGCAGTCAGCGTTGTGAGGACTAAGTTTGAACAAAGACACACAAGAGATGGGTTATTCAACAATGGAATTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344508" ref_strand="+" ref_description="SGN-E344508 [cTOF-14-P3]">
      <seq>ttcagggcagcattagatgagaacgatattttgatttctcctgctgcaccatcagcagcttacaaaattggtgaaaagaagaacgatccgttgtcaatgtatgctggtgatattatgactgtcaatgtgaacttggctggtcttccagcattagttctcccgtgtggatttgttgatagcagttctgtggcccttcccgttggtgttcagatgattagtgctgcatttgaagaggagaaattgcttaaagtaggccatatctttgagcagacactgcaaggctgctcttttattcctcctctagttgctgatgaattgggatgctagtcgtgaattcttgcgcgcagttatgttccagttaatcaatgcaacgatttcacgcaaagtgactgcaaaatagcgccatggtgcaaagctctgtgctgacaagaagacgacaggttcgtctatctagtatcaaatgatccaccaatccttccaggctcgtgccactgtttccaaacgaatcgttacgttcagaaaactttcttgtgctggattttttttgtaggattggcgtgtaaagatacgcgccaatcgaaaattcataagaactctcaatatctgagatacttgtagcttattgcaagcaaattctttttgtaaatagcatgcatcaatttttgaaactttgatgtatacatttgtcatctttattttctgcaaagttgatttcagttttttgccccttgatgctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="22538" stop="20449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22238" g_stop="22169" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22168" i_stop="22022" i_length="147">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22021" g_stop="21972" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="120" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21971" i_stop="21865" i_length="107">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21864" g_stop="21751" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="234" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21750" i_stop="21254" i_length="497">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21253" g_stop="20739" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="748" r_length="514" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E344508" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22238" e_stop="22169"/>
          <exon e_start="22021" e_stop="21972"/>
          <exon e_start="21864" e_stop="21751"/>
          <exon e_start="21253" e_stop="20739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGGGCAGCATTAGATGAGAACGATATTTTGATTTCTCCTGCTGCACCATCAGCAGCTTACAAAATTGGTACACTTCTTTTACCTTTTGCATTTACTGATGAAACTACTTTTCGATCTTGCTTAAATACATTTTTGTTTTCTTTTCTTTTTGTCCCATGATCCCCTTCCCTTGAAAGGCAACACTAACTCTCACTACGACATGTGGAATTTACAGGTGAAAAGAAGAACGATCCGTTGTCAATGTATGCTGGTGATATTATGACTGTAAGTAGTTTTTTTTCCTATTTTAACCCCTCTAGTCAGATGATGACGTAACTTGTTCAGTCTAGTTTATGTTCTCTTCAATTAATGATTATTTTCATTATTGGCAGGTCAATGTGAACTTGGCTGGTCTTCCAGCATTAGTTCTCCCGTGTGGATTTGTTGATAGCAGTTCTGTGGCCCTTCCCGTTGGTGTTCAGATGATTAGTGCTGCATTTGAAGAGGTGAGTTTCAGTACTCCAACTATTTCCAGTTGATATTCCAGTGTTAAGAATGATATTTGAGCACGGGGATAGTTCATGTTATCTAGATCTCTCTTTTGAGAAAGTTGAAAAGGTCGGTAAAAGAGGGATAACATACTTACTTCGCTTGAAAATGTAACCGAGTTGAACTTGAGCTTCTTAAATAGATGTATTGAATACATTCACTTTTTGTACGACCGTAGAGATGAAAAGTGTGGATACTATGAAAGCATAAATGCTCAAGTTTAATGCAAGCAAACCTGAAGAAGTAGAATATGATTAGAAAAGAAATAAAAACACCTAGTAGTTTAGACTTTTATAACCATTTTGAACCTTATCTCACACGGTTCTGAGCTATGTTGCTCGGACTCTCCAAAATGAACTACTTATATGCCTTCACTTCTTGCTTTTCTTTTAGCATGCTTGCTTGTATGCATCTAAAAGTTCGTCATATTTTACGCGTACTAAAATGAATGCAGGAGAAATTGCTTAAAGTAGGCCATATCTTTGAGCAGACACTGCAAGGCTGCTCTTTTATTCCTCCTCTAGTTGCTGATGAATTGGGATGCTAGTCGTGAATTCTTGCGCGCAGTTATGTTCCAGTTAATCAATGCAACGATTTCACGCAAAGTGACTGCAAAATAGCGCCATGGTGCAAAGCTCTGTGCTGACAAGAAGACGACAGGTTCGTCTATCTAGTATCAAATGATCCACCAATCCTTCCAGGCTCGTGCCACTGTTTCCAAACGAATCGTTACGTTCAGAAAACTTTCTTGTGCTGGATTTTTTTTTGTAGGATTGGCGTGTAAAGATACGCGCCAATCGAAAATTCATAAGAACTCTCAATATCTGAGATACTTGTAGCTTATTGCAAGCAAATTCTTTTTGTAAATTAGCATGCATCAATTTTGAAAACTTTGATGTATACATTTGTCATCTTTATTTTCTGCAAAGTTGATTTCAAGTTTTTG-CCCTTGATGCTCATTTGATGAAA</genome_strand>
        <mrna_strand>TTCAGGGCAGCATTAGATGAGAACGATATTTTGATTTCTCCTGCTGCACCATCAGCAGCTTACAAAATTG...................................................................................................................................................GTGAAAAGAAGAACGATCCGTTGTCAATGTATGCTGGTGATATTATGACT...........................................................................................................GTCAATGTGAACTTGGCTGGTCTTCCAGCATTAGTTCTCCCGTGTGGATTTGTTGATAGCAGTTCTGTGGCCCTTCCCGTTGGTGTTCAGATGATTAGTGCTGCATTTGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAATTGCTTAAAGTAGGCCATATCTTTGAGCAGACACTGCAAGGCTGCTCTTTTATTCCTCCTCTAGTTGCTGATGAATTGGGATGCTAGTCGTGAATTCTTGCGCGCAGTTATGTTCCAGTTAATCAATGCAACGATTTCACGCAAAGTGACTGCAAAATAGCGCCATGGTGCAAAGCTCTGTGCTGACAAGAAGACGACAGGTTCGTCTATCTAGTATCAAATGATCCACCAATCCTTCCAGGCTCGTGCCACTGTTTCCAAACGAATCGTTACGTTCAGAAAACTTTCTTGTGCTGGA-TTTTTTTTGTAGGATTGGCGTGTAAAGATACGCGCCAATCGAAAATTCATAAGAACTCTCAATATCTGAGATACTTGTAGCTTATTGCAAGCAAATTCTTTTTGTAAA-TAGCATGCATCAATTTTTGAAACTTTGATGTATACATTTGTCATCTTTATTTTCTGCAAAGTTGATTTCAGTTTTTTGCCCCTTGATGCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370469" ref_strand="+" ref_description="SGN-E370469 [TUS-29-O21](-)">
      <seq>tcaagttcttgactatggctgtgatgttactacatttttctggcaggtggtttttaactcaagaaaggttagatagagaagtaggagtagagcttgcttcagaagtgtcgacgtgttcaactgttaaaccaggttgaatctcttctgttccttgtgtttttcctggaacatgtgaacttttacaagtacattgttcctccttaagtacggaatgaagccatcggtccgcgaagcatatcaagctttgtatcatattttgacaaatactagcaattattcatagtggatgaagtaatattttttcttgcatatataagctactcaggtttatattttctgagttttgaccaatctgttaccattcaatgaaaatctaatgctctcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="27793" stop="24537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27493" g_stop="27427" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27426" i_stop="25160" i_length="2267">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25159" g_stop="24837" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="390" r_length="323" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E370469" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27493" e_stop="27427"/>
          <exon e_start="25159" e_stop="24837"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTTCTTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAGGTATGGCATTGAGCACCCTTTTTCTCATTTTGTAGTAATTTGTGTTAGTTTCTTTCAGTTTTTTGTGCCTGTTGTTTGTTGAGCTTCTGAAAATGGATAGGAACTGGAAAAAAATCATTTCTTGATGTTGTATGGACTTGTTGTGTAACCCCTTTTATTCTTTTGGTGTGTTGTTTTGTTTATTTTGTCAAATGGGAAGTTTGAGTAGGTTCTGTTGGTACTTTGTTGATTACCAGGCTCTGTATATTCTTGTATCTGCTGTATATACTTGAAGCTATGCTCTTGTTGGCTGAAAGATTGAATCTTTTTAACATTTTATTGCTCAGAGCTGTCATTTACATGATGAATAGAACTCCTAGTAGATATATTAGTTTGCTGATATTGTTGTGTTGTTGCTCGGACTCTTTGAAAATGTCAATGGGTGTATTTTGGATTCTCCAAAAGTAGTGTATTTTTTTTGGAGATTCTTACATGGGTGCGGCATCGGTAGTGAAGAGTCTGCGCAACTTGGGTTACTTCTTTCTGTCCTGTTGTGTTCATTTTGTCAGTTTCATCAAGTTCTATTACTGAAGGGGAATTTAAGGAGCTTCTGTTCTAGCGTTTAACATCTGTTTTCGTTTATGTTGTAGCGCTTTTTCCAATTAGAGCTGTCTATTTATCCCTGTATCTGCTGTATATACTTGAACCCACTCTCTTGTAGGCTGAAAGATTGAATTTCTTTTACAGCGTTTAACATTTGTTTTCGTTCATGTTGTAGCACTTTTTTCAATTAGAGCTGTCTATTTATCCCTGTATCTGCTGTATATACTTGAACCCACTCTCTTGTAGGCTGAAAGATTGAATTTCTTTTACGTATTTTTGCTCAGAGCTGCCGTTTATTAGTGAATGGAACTCTTAAATAGATGTATAAGCTGAATGATTTGAAGGTGTAACTTTGATCAGTATAAAAGCTGGATGATTTGAAGGTGTACTTTTGATTAGGATATGAGCTGAATGATTTAAAGGTCTTCTTTGTGGACCGAACCCATCATTTCACAATTTTGTATCAACTTATTGTTTACCCTGTATATACTTGAATGTGCATATTTTGCTCAAAGCAGCACCTTATGTACTGAATGGCACTCTTATATAATCTGACTGATGTAAAGCTCATTTCTTATTTTTTATCAACTTATCGTGTAACCCTTTTTTCTTTTGAGGTGTTGTTTTGTTCTTTCTTAGTTCTAACCTGGTGAGCTTATGTTAGTTCTGGCATTTTATTTTTCTGACATGTTATGGCACTTCTCCAATTAGAATTCTCTATTTGTCCCGGTATCTGCTGTATGTACTTCAAGTTACTCTCGTGTGCAAAAGATTGAAGTTCTTTACATAATTTGCGCAGAAAAGCCACTTATGTAATGACTGGAACTCTTGATAAATATATAAGCTGAATGATGTTAAAAGATAATGATTCTGAGGTAGGATATCTTCTTTCCCGACCCCATCCCTTCCCAGAGGAACCAAGAGATCTGTTATAAAATTGAGCAACTTTGGAGCAGTAAGATCATAATAGGAGGAAAGTTGATATCTTTACCAAAAGTTGGAAGAATTTTCGCGTTTTACTTATTTGGATATTCACTCATTAACGAATTCAAAGAAGGTTCTTACAGCTTTTACACCAAGGTATTGGGTTCATTCAAAGATCTTGATTATACTACTACTCTCAATTTCACTTGAAGATATAAGAGTGCTCGATGATATTAATTACTACAGTAGAGATCATGTTTGAGGTTAAAAGTTTCTCTTGCTGAGGTCGAAGTTCTTCTGATGCATATGACCTTCAGCTGCAAAGGACTTCCAATTTTCTTTATCTGCAAGTCTAATGACATACTGGTAGTTGGAGGGATAGACAGTTGAATAATCTAGTATTCATAATCTTCCAGATTTTTCTGGGAAATGGAAACAAGAGTTGAAAGGCAAGACTCGAGAGATGAGGCGCAACATAGCATTCCTTTGCTCTTAGTAGGAAGAAGTTGGATAATCTGTAAAAGGCTCCGAGTTACTAGAGGTTTTCGATAGAACATAAATGCCAAAGGCAGAAACCTCATATTAGGCATAGAGTTGGAGAAAGGGTGTTTGGATTTGTTGAGACTTGTTACTTTCTTGATTTTTTCTTATTGAAGACAAAGCGTTAATCCGTTTTCAACTGTTTAATTGCTATGGCTATGTGACCCCATGCTGTGTTCCTTTTGTCGATTCACAACTGTTTCTTGACTTATATATCGCAGGTTAGATAGAGAAGTAGGAGTAGAGCTTGCTTCAGAAGTGTCGACGTGTTCAACTGTTAAACCAGGTTGAATCTCTTCTGTTCCTTGTGTTTTTCCTGGAACATGTGAACTTTTACAAGTACATTGTTCCTCCTTAAGTACGGAATGAAGCCATCGGTCCGCGAAGCATATCAAGCTTTGTATCATATTTTGACAAATACTAGCAATTATTCATAGTGGATGAAGTAATATTTTTTCTTGCATATATAAGCTACTCAGGTTTATATTTTCTGAGTTTTGACCAATCTGTTACCATTCAATGAAAATCTAATGCTCTCAATTTA</genome_strand>
        <mrna_strand>TCAAGTTCTTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGATAGAGAAGTAGGAGTAGAGCTTGCTTCAGAAGTGTCGACGTGTTCAACTGTTAAACCAGGTTGAATCTCTTCTGTTCCTTGTGTTTTTCCTGGAACATGTGAACTTTTACAAGTACATTGTTCCTCCTTAAGTACGGAATGAAGCCATCGGTCCGCGAAGCATATCAAGCTTTGTATCATATTTTGACAAATACTAGCAATTATTCATAGTGGATGAAGTAATATTTTTTCTTGCATATATAAGCTACTCAGGTTTATATTTTCTGAGTTTTGACCAATCTGTTACCATTCAATGAAAATCTAATGCTCTCAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282772" ref_strand="+" ref_description="SGN-E282772 [cLER-15-E17]">
      <seq>ttacgagctctgttgctgctgctgctgtgctgtgctgtgtgtagccgtttcgaagttattccctatgcattttggcccccttcatctcttttcttcctcgtatttcgtgcacctagggaaaaccccacttcttaaaccctcacaaaaatcttcaaaacaaagaaatagtcttcactgtttgaaaactcagtgtctttaatggtagtacaagacaaataaagaagaaagaacaaagcttttacctttttttttcttttcaagaagagagagagagtgtgtgttaaaatcagtttgactgattagggtttgtttggaccaaccttcaagttcttgactatggctgtgatgttactacatttttctggcaggtggtttttaactcaagaaaggttagatagagaagtaggagtagagcttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="28115" stop="24829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27815" g_stop="27427" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27426" i_stop="25160" i_length="2267">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25159" g_stop="25129" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="420" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E282772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27815" e_stop="27427"/>
          <exon e_start="25159" e_stop="25129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGAGCTCTGTTGCTGCTGCTGCTGTGCTGTGCTGTGTGTAGCCGTTTCGAAGTTATTCCCTATGCATTTTGGCCCCCTTCATCTCTTTTCTTCCTCGTATTTCGTGCACCTAGGGAAAACCCCACTTCTTAAACCCTCACAAAAATCTTCAAAACAAAGAAATAGTCTTCACTGTTTGAAAACTCAGTGTCTTTAATGGTAGTACAAGACAAATAAAGAAGAAAGAACAAAGCTTTTACCTTTTTTTTTCTTTTCAAGAAGAGAGAGAGAGTGTGTGTTAAAATCAGTTTGACTGATTAGGGTTTGTTTGGACCAACCTTCAAGTTCTTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAGGTATGGCATTGAGCACCCTTTTTCTCATTTTGTAGTAATTTGTGTTAGTTTCTTTCAGTTTTTTGTGCCTGTTGTTTGTTGAGCTTCTGAAAATGGATAGGAACTGGAAAAAAATCATTTCTTGATGTTGTATGGACTTGTTGTGTAACCCCTTTTATTCTTTTGGTGTGTTGTTTTGTTTATTTTGTCAAATGGGAAGTTTGAGTAGGTTCTGTTGGTACTTTGTTGATTACCAGGCTCTGTATATTCTTGTATCTGCTGTATATACTTGAAGCTATGCTCTTGTTGGCTGAAAGATTGAATCTTTTTAACATTTTATTGCTCAGAGCTGTCATTTACATGATGAATAGAACTCCTAGTAGATATATTAGTTTGCTGATATTGTTGTGTTGTTGCTCGGACTCTTTGAAAATGTCAATGGGTGTATTTTGGATTCTCCAAAAGTAGTGTATTTTTTTTGGAGATTCTTACATGGGTGCGGCATCGGTAGTGAAGAGTCTGCGCAACTTGGGTTACTTCTTTCTGTCCTGTTGTGTTCATTTTGTCAGTTTCATCAAGTTCTATTACTGAAGGGGAATTTAAGGAGCTTCTGTTCTAGCGTTTAACATCTGTTTTCGTTTATGTTGTAGCGCTTTTTCCAATTAGAGCTGTCTATTTATCCCTGTATCTGCTGTATATACTTGAACCCACTCTCTTGTAGGCTGAAAGATTGAATTTCTTTTACAGCGTTTAACATTTGTTTTCGTTCATGTTGTAGCACTTTTTTCAATTAGAGCTGTCTATTTATCCCTGTATCTGCTGTATATACTTGAACCCACTCTCTTGTAGGCTGAAAGATTGAATTTCTTTTACGTATTTTTGCTCAGAGCTGCCGTTTATTAGTGAATGGAACTCTTAAATAGATGTATAAGCTGAATGATTTGAAGGTGTAACTTTGATCAGTATAAAAGCTGGATGATTTGAAGGTGTACTTTTGATTAGGATATGAGCTGAATGATTTAAAGGTCTTCTTTGTGGACCGAACCCATCATTTCACAATTTTGTATCAACTTATTGTTTACCCTGTATATACTTGAATGTGCATATTTTGCTCAAAGCAGCACCTTATGTACTGAATGGCACTCTTATATAATCTGACTGATGTAAAGCTCATTTCTTATTTTTTATCAACTTATCGTGTAACCCTTTTTTCTTTTGAGGTGTTGTTTTGTTCTTTCTTAGTTCTAACCTGGTGAGCTTATGTTAGTTCTGGCATTTTATTTTTCTGACATGTTATGGCACTTCTCCAATTAGAATTCTCTATTTGTCCCGGTATCTGCTGTATGTACTTCAAGTTACTCTCGTGTGCAAAAGATTGAAGTTCTTTACATAATTTGCGCAGAAAAGCCACTTATGTAATGACTGGAACTCTTGATAAATATATAAGCTGAATGATGTTAAAAGATAATGATTCTGAGGTAGGATATCTTCTTTCCCGACCCCATCCCTTCCCAGAGGAACCAAGAGATCTGTTATAAAATTGAGCAACTTTGGAGCAGTAAGATCATAATAGGAGGAAAGTTGATATCTTTACCAAAAGTTGGAAGAATTTTCGCGTTTTACTTATTTGGATATTCACTCATTAACGAATTCAAAGAAGGTTCTTACAGCTTTTACACCAAGGTATTGGGTTCATTCAAAGATCTTGATTATACTACTACTCTCAATTTCACTTGAAGATATAAGAGTGCTCGATGATATTAATTACTACAGTAGAGATCATGTTTGAGGTTAAAAGTTTCTCTTGCTGAGGTCGAAGTTCTTCTGATGCATATGACCTTCAGCTGCAAAGGACTTCCAATTTTCTTTATCTGCAAGTCTAATGACATACTGGTAGTTGGAGGGATAGACAGTTGAATAATCTAGTATTCATAATCTTCCAGATTTTTCTGGGAAATGGAAACAAGAGTTGAAAGGCAAGACTCGAGAGATGAGGCGCAACATAGCATTCCTTTGCTCTTAGTAGGAAGAAGTTGGATAATCTGTAAAAGGCTCCGAGTTACTAGAGGTTTTCGATAGAACATAAATGCCAAAGGCAGAAACCTCATATTAGGCATAGAGTTGGAGAAAGGGTGTTTGGATTTGTTGAGACTTGTTACTTTCTTGATTTTTTCTTATTGAAGACAAAGCGTTAATCCGTTTTCAACTGTTTAATTGCTATGGCTATGTGACCCCATGCTGTGTTCCTTTTGTCGATTCACAACTGTTTCTTGACTTATATATCGCAGGTTAGATAGAGAAGTAGGAGTAGAGCTTGCT</genome_strand>
        <mrna_strand>TTACGAGCTCTGTTGCTGCTGCTGCTGTGCTGTGCTGTGTGTAGCCGTTTCGAAGTTATTCCCTATGCATTTTGGCCCCCTTCATCTCTTTTCTTCCTCGTATTTCGTGCACCTAGGGAAAACCCCACTTCTTAAACCCTCACAAAAATCTTCAAAACAAAGAAATAGTCTTCACTGTTTGAAAACTCAGTGTCTTTAATGGTAGTACAAGACAAATAAAGAAGAAAGAACAAAGCTTTTACCTTTTTTTTTCTTTTCAAGAAGAGAGAGAGAGTGTGTGTTAAAATCAGTTTGACTGATTAGGGTTTGTTTGGACCAACCTTCAAGTTCTTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGATAGAGAAGTAGGAGTAGAGCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E321888" ref_strand="+" ref_description="SGN-E321888 [cTOB-29-F15]">
      <seq>ttgactatggctgtgatgttactacatttttctggcaggtggtttttaactcaagaaaggtatggcattgagcaccctttttctcattttgtagtaatttgtgttagtttctttcagttttttgtgcctgttgtttgttgagcttctgaaaatggataggaactggaaaaaaatcatttcttgatgttgtatggacttgttgtgtaaccccttttattcttttggtgtgttgttttgtttattttgtcaaatgggaagtttgagtaggttctgttggtactttgttgattaccaggctctgtatattcttgtatctgctgtatatacttgaagctatgctcttgttggctgaaagattgaatctttttaacattttattgctcagagctgtcatttacatgatgaatagaactcctagtagatatattagtttgctgatattgttgtgttgttgctcggactctttgaaaatgtcagtgggtgtattttggattctccaaaagtagtgtattttttttggagattcttacatgggtgcggcatcggtagtgaagagtctgcgcaacttgggttacttctttctgtcctgttgtgttcattttgtcagtttcatcaagttctattactgaaggggaatttaaggagcttctgttctagcgtttaacatctgttttcgtttatgttgtagcgcttttttcaattagagctgtctatttatccctgtatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="27785" stop="26455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27485" g_stop="26755" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E321888" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27485" e_stop="26755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAGGTATGGCATTGAGCACCCTTTTTCTCATTTTGTAGTAATTTGTGTTAGTTTCTTTCAGTTTTTTGTGCCTGTTGTTTGTTGAGCTTCTGAAAATGGATAGGAACTGGAAAAAAATCATTTCTTGATGTTGTATGGACTTGTTGTGTAACCCCTTTTATTCTTTTGGTGTGTTGTTTTGTTTATTTTGTCAAATGGGAAGTTTGAGTAGGTTCTGTTGGTACTTTGTTGATTACCAGGCTCTGTATATTCTTGTATCTGCTGTATATACTTGAAGCTATGCTCTTGTTGGCTGAAAGATTGAATCTTTTTAACATTTTATTGCTCAGAGCTGTCATTTACATGATGAATAGAACTCCTAGTAGATATATTAGTTTGCTGATATTGTTGTGTTGTTGCTCGGACTCTTTGAAAATGTCAATGGGTGTATTTTGGATTCTCCAAAAGTAGTGTATTTTTTTTGGAGATTCTTACATGGGTGCGGCATCGGTAGTGAAGAGTCTGCGCAACTTGGGTTACTTCTTTCTGTCCTGTTGTGTTCATTTTGTCAGTTTCATCAAGTTCTATTACTGAAGGGGAATTTAAGGAGCTTCTGTTCTAGCGTTTAACATCTGTTTTCGTTTATGTTGTAGCGCTTTTTCCAATTAGAGCTGTCTATTTATCCCTGTATCTGCT</genome_strand>
        <mrna_strand>TTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAGGTATGGCATTGAGCACCCTTTTTCTCATTTTGTAGTAATTTGTGTTAGTTTCTTTCAGTTTTTTGTGCCTGTTGTTTGTTGAGCTTCTGAAAATGGATAGGAACTGGAAAAAAATCATTTCTTGATGTTGTATGGACTTGTTGTGTAACCCCTTTTATTCTTTTGGTGTGTTGTTTTGTTTATTTTGTCAAATGGGAAGTTTGAGTAGGTTCTGTTGGTACTTTGTTGATTACCAGGCTCTGTATATTCTTGTATCTGCTGTATATACTTGAAGCTATGCTCTTGTTGGCTGAAAGATTGAATCTTTTTAACATTTTATTGCTCAGAGCTGTCATTTACATGATGAATAGAACTCCTAGTAGATATATTAGTTTGCTGATATTGTTGTGTTGTTGCTCGGACTCTTTGAAAATGTCAGTGGGTGTATTTTGGATTCTCCAAAAGTAGTGTATTTTTTTTGGAGATTCTTACATGGGTGCGGCATCGGTAGTGAAGAGTCTGCGCAACTTGGGTTACTTCTTTCTGTCCTGTTGTGTTCATTTTGTCAGTTTCATCAAGTTCTATTACTGAAGGGGAATTTAAGGAGCTTCTGTTCTAGCGTTTAACATCTGTTTTCGTTTATGTTGTAGCGCTTTTTTCAATTAGAGCTGTCTATTTATCCCTGTATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E370470" ref_strand="+" ref_description="SGN-E370470 [TUS-29-O21]">
      <seq>ttacgagctctgttgctgctgctgctgtgctgtgctgtgtgtagccgtttcgaagttattccctatgcattttggcccccttcatctcttttcttcctcgtatttcgtgcacctagggaaaaccccacttcttaaaccctcacaaaaatcttcaaaacaaagaaatagtcttcactgtttgaaaactcagtgtctttaatggtagtacaagacaaataaagaagaaagaacaaagcttttaccttttttttttcttttcagaagagagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="28115" stop="27244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27815" g_stop="27544" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E370470" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27815" e_stop="27544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGAGCTCTGTTGCTGCTGCTGCTGTGCTGTGCTGTGTGTAGCCGTTTCGAAGTTATTCCCTATGCATTTTGGCCCCCTTCATCTCTTTTCTTCCTCGTATTTCGTGCACCTAGGGAAAACCCCACTTCTTAAACCCTCACAAAAATCTTCAAAACAAAGAAATAGTCTTCACTGTTTGAAAACTCAGTGTCTTTAATGGTAGTACAAGACAAATAAAGAAGAAAGAACAAAGCTTTTACCTTTTTTTTTCTTTTCAAGAAGAGAGAGAG</genome_strand>
        <mrna_strand>TTACGAGCTCTGTTGCTGCTGCTGCTGTGCTGTGCTGTGTGTAGCCGTTTCGAAGTTATTCCCTATGCATTTTGGCCCCCTTCATCTCTTTTCTTCCTCGTATTTCGTGCACCTAGGGAAAACCCCACTTCTTAAACCCTCACAAAAATCTTCAAAACAAAGAAATAGTCTTCACTGTTTGAAAACTCAGTGTCTTTAATGGTAGTACAAGACAAATAAAGAAGAAAGAACAAAGCTTTTACCTTTTTTTTTTCTTTTCAGAAGAGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537647" ref_strand="+" ref_description="SGN-E537647 [TUS-56-F19](-)">
      <seq>aggattaaagagtagtgataatgagaagagggtgaaattggaaaccgttgagactgaaaggaacttgttattggtgaaacttaacaagttggaagtgagtgaaaaagatcatcgagctgaaggagaagtaaaggagaaagaaataaggggcttgaagaatcaactcgaggatttaaaagcaactgtgaagaagaacgaggcgtggagaagggagaaggaggcacttcattcggtgaaaaacgagttagagaaaagggtaatagaaatgatgagtaaagtgactgagttggagaaaaagttggaggagaaggaaacgttgattactgaaagaggcgtcgacaacaatgttaatggcgtttcagctgaggataaagttaaagctcccggtggcaatgtagacttactaatggcggctgcatcttcagttgctgcagttgctctggtaggtattttgtgctttcttcgatttgcaagaaaatcataaactcagagcttgttgtttatcttgacttgctagttccatgaaccataggagtttttagcaaccatttttttcgccttctaaacaagtttgttagtgtaatcacttcaaagaaagctttttgtattgcagtgaagcactgaattcatagtaaaaaaaaccaaaaatagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="31844" stop="30610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31544" g_stop="30914" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E537647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31544" e_stop="30914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGCGTCGACAACAATGTTAATGGCGTTTCAGCTGAGGATAAAGTTAAAGCTCCCGGTGGCAATGTAGACTTACTAATGGCGGCTGCATCTTCAGTTGCTGCAGTTGCTCTGGTAGGTATTTTGTGCTTTCTTCGATTTGCAAGAAAATCATAAACTCAGAGCTTGTTGTTTATCTTGACTTGCTAGTTCCATGAACCATAGGAGTTTTTAGCAACCATTTTTTTCGCCTTCTAAACAAGTTTGTTAGTGTAATCACTTCAAAGAAAGCTTTTTGTATTGCAGTGAAGCACTGAATTCATA</genome_strand>
        <mrna_strand>AGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGCGTCGACAACAATGTTAATGGCGTTTCAGCTGAGGATAAAGTTAAAGCTCCCGGTGGCAATGTAGACTTACTAATGGCGGCTGCATCTTCAGTTGCTGCAGTTGCTCTGGTAGGTATTTTGTGCTTTCTTCGATTTGCAAGAAAATCATAAACTCAGAGCTTGTTGTTTATCTTGACTTGCTAGTTCCATGAACCATAGGAGTTTTTAGCAACCATTTTTTTCGCCTTCTAAACAAGTTTGTTAGTGTAATCACTTCAAAGAAAGCTTTTTGTATTGCAGTGAAGCACTGAATTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700901" ref_strand="+" ref_description="SGN-E700901 [FA14BH11]">
      <seq>atgctgccaatggagatgtttttgatgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagagaataatcaactttttcgcgagaatcaagtgatcaaagagaagatggagaaatctaagcactcgattgaggaaatccagaacgaaaaagtggagttacagaagaaggcgaagaagtttgagtcggacaataaggctctaggaccggtagctggccgagcagcagagctcgagggtgaacagtctcggctgcagcatgatctcataacttcattgaacgatctggaagaatcgaattctgagctatcgaaactgaagttggatctagaaggattaaagagtagtgataatgagaagagggtgaaattggaaaccgttgagactgaaaggaacttgttattggtgaaacttaacaagttggaagcgagtgaaaaagatcatcgagctgaaggagaagtaaaggagaaagaaataaggggcttgaagaatcaactcgaggatttaaaagcaactgtgaagaagaacgaggcgtggagaagggagaaggaggcacttcattcggtgaaaaacgagttagagaaaagggtaatagaaatgatgagtaaagtgactgagttggagaaaaagttggaggagaaggaaacgttgattactgaaagaggcgtcgacaacaatgttaatggcgtttcagctgaggataaagttaaagctcccggtggcaatgtagacttactaatggcggctgcatcttcagttgctgcagttgctctggtaggtattttgtgctttcttcgatttgcaagaaaatcataaactccgagcttgttgtttatcttgacttgctaattccatgaaccataggagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="32226" stop="30707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31926" g_stop="31007" g_length="920"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="920" r_length="920" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E700901" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>920</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31926" e_stop="31007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGCGTCGACAACAATGTTAATGGCGTTTCAGCTGAGGATAAAGTTAAAGCTCCCGGTGGCAATGTAGACTTACTAATGGCGGCTGCATCTTCAGTTGCTGCAGTTGCTCTGGTAGGTATTTTGTGCTTTCTTCGATTTGCAAGAAAATCATAAACTCAGAGCTTGTTGTTTATCTTGACTTGCTAGTTCCATGAACCATAGGAGTTT</genome_strand>
        <mrna_strand>ATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAAGGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGCGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGCGTCGACAACAATGTTAATGGCGTTTCAGCTGAGGATAAAGTTAAAGCTCCCGGTGGCAATGTAGACTTACTAATGGCGGCTGCATCTTCAGTTGCTGCAGTTGCTCTGGTAGGTATTTTGTGCTTTCTTCGATTTGCAAGAAAATCATAAACTCCGAGCTTGTTGTTTATCTTGACTTGCTAATTCCATGAACCATAGGAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E689249" ref_strand="+" ref_description="SGN-E689249 [t3_tus_80_L19]">
      <seq>cgattcgaataagaacaaaaatttgatcttttggaatcaaatgcagtaacaaagcaaaaccctaatccaaatcaaattcacattcttcatttctcaggttaactatggcggacgagaatgctgccaatggagatgtttttgatgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagagaataatcaactttttcgcgagaatcaagtgatcaaagagaagatggagaaatctaagcactcgattgaggaaatccagaacgaaaaagtggagttacagaagaaggcgaagaagtttgagtcggacaataatgctctaggaccggtagctggccgagcagcagagctcgagggtgaacagtctcggctgcagcatgatctcataacttcattgaacgatctggaagaatcgaattctgagctatcgaaactgaagttggatctagaaggattaaagagtagtgataatgagaagagggtgaaattggaaaccgttgagactgaaaggaacttgttattggtgaaacttaacaagttggaagtgagtgaaaaagatcatcgagctgaaggagaagtaaaggagaaagaaataaggggcttgaagaatcaactcgaggatttaaaagcaactgtgaagaagaacgaggcgtggagaagggagaaggaggcacttcattcggtgagaaacgagttagagaaaagggtaatagaaatgatgagtaaagtgactgagttggagaaaaagttggaggagaaggaaacgttgattactgaaagaggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="33320" stop="30911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33022" g_stop="32926" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32925" i_stop="31948" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31947" g_stop="31211" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="833" r_length="736" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E689249" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33022" e_stop="32926"/>
          <exon e_start="31947" e_stop="31211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAGGTAAGTTTTCACATTCCCAATTTTTATTCTTTTTTACTTGTTAATAATTTTTTTTAATATGAAATTGCAGAATTTGAGTATATATATATATATATATGAAAATGGATATTGAGGATCTTGTTAGTTTGGGGTTGAAGGGTAGATGTTGTTTTTGGTTGAATAAGGGAAATGCTGTATTTGTAATTCGAATTCTATGGTGATTTAGAAAATTTTTTTTGATGATTTCTGGGTCAGTGAAGTGTTTTTTTTTTGTTTTTTTTTTCCAGATTTTTTGATTTGTTTGAGTTTTTTCATGTTGGGTTATTTTTGAAAGAATTGGGTGTTATTCAGATTTTCTGATTAATTTTAGTATTTTCATTGTTGGGTGATTTTGAAAATTTTTCATTTTTGGATCACTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTCATCATTGGGTGATTTTGAAAAAAATTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTTTATCTATGGGTGATTTTGAAAATTTTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTTATTTTTGTTTTTTCATCATTGGGTGATTTTGAAATTTTCATTTTTGGATCAGTGAATAATTGAGTGTTCTTCAAAATTTTCGATTAAATTTAGTTTTTTCATCATTGGGTGATTTTGAAAATTTTCATTTCTGGGTCAGTGTATTGGGTGTTTTTTTCTCGGAAACAGCCTTTATATCTGTACGAATTAGTGGTAACGTTTGTGCACACTCAACCCTCCCTAGACCCCATTTAGTGGTATCTTATCGGATATGATGATGATGTGGTTGCTGTTGTTGAAAGAGGGTGTTTTTGATCTTCTTAAAGTTTTTGTTTTTTTGGATTTATTGATTGGTATGAATATTCTCGGATTTCCAGTTTATTTGGGACTGAGGCGTAGTCGTTGTTGGATTAATTTCAGGTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGC</genome_strand>
        <mrna_strand>CGATTCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAGAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E537650" ref_strand="+" ref_description="SGN-E537650 [TUS-56-F19]">
      <seq>tttttcttttgctcaatcaaaaatcacaatcgaataagaacaaaaatttgatcttttggaatcaaatgcagtaacaaagcaaaaccctaatccaaatcaaattcacattcttcatttctcaggtttaactatggcggacgagaatgctgccaatggagatgtttttgatgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagagaataatcaactttttcgcgagaatcaagtgatcaaagagaagatggagaaatctaagcactcgattgaggaaatccagaacgaaaaagtggagttacagaagaaggcgaagaagtttgagtcggacaataatgctctaggaccggtagctggccgagcagcagagctcgagggtgaacagtctcggctgcagcatgatctcataacttcattgaacgatctggaagaatcgaattctgagctatcgaaactgaagttggatctagaaggattaaagagtagtgataatgagaagagggtgaaattggaaaccgttgagactgaaaggaacttgttattggtgaaacttaacaagttggaagtgagtgaaaaagatcatcgagctgaaggagaagtaaaggagaaagaaataaggggcttgaagaatcaactcgaggatttaaaagcaactgtgaagaagaacgaggcgtggagaagggagaaggaggcacttcattcggtgaaaaacgagttagagaaaagggtaatagaaatgatgagtaaagtgactgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="33347" stop="30957"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33047" g_stop="32926" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32925" i_stop="31948" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31947" g_stop="31257" g_length="691"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="813" r_length="691" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E537650" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537650" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33047" e_stop="32926"/>
          <exon e_start="31947" e_stop="31257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTTTTGCTCAATCAAAAATCACAATCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAGGTAAGTTTTCACATTCCCAATTTTTATTCTTTTTTACTTGTTAATAATTTTTTTTAATATGAAATTGCAGAATTTGAGTATATATATATATATATATGAAAATGGATATTGAGGATCTTGTTAGTTTGGGGTTGAAGGGTAGATGTTGTTTTTGGTTGAATAAGGGAAATGCTGTATTTGTAATTCGAATTCTATGGTGATTTAGAAAATTTTTTTTGATGATTTCTGGGTCAGTGAAGTGTTTTTTTTTTGTTTTTTTTTTCCAGATTTTTTGATTTGTTTGAGTTTTTTCATGTTGGGTTATTTTTGAAAGAATTGGGTGTTATTCAGATTTTCTGATTAATTTTAGTATTTTCATTGTTGGGTGATTTTGAAAATTTTTCATTTTTGGATCACTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTCATCATTGGGTGATTTTGAAAAAAATTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTTTATCTATGGGTGATTTTGAAAATTTTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTTATTTTTGTTTTTTCATCATTGGGTGATTTTGAAATTTTCATTTTTGGATCAGTGAATAATTGAGTGTTCTTCAAAATTTTCGATTAAATTTAGTTTTTTCATCATTGGGTGATTTTGAAAATTTTCATTTCTGGGTCAGTGTATTGGGTGTTTTTTTCTCGGAAACAGCCTTTATATCTGTACGAATTAGTGGTAACGTTTGTGCACACTCAACCCTCCCTAGACCCCATTTAGTGGTATCTTATCGGATATGATGATGATGTGGTTGCTGTTGTTGAAAGAGGGTGTTTTTGATCTTCTTAAAGTTTTTGTTTTTTTGGATTTATTGATTGGTATGAATATTCTCGGATTTCCAGTTTATTTGGGACTGAGGCGTAGTCGTTGTTGGATTAATTTCAGGTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTT</genome_strand>
        <mrna_strand>TTTTTCTTTTGCTCAATCAAAAATCACAATCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710711" ref_strand="+" ref_description="SGN-E710711 [FA56BG01]">
      <seq>tgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagagaataatcaactttttcgcgagaatcaagtgatcaaagagaagatggagaaatctaagcactcgattgaggaaatccagaacgaaaaagtggagttacagaagaaggcgaagaagtttgagtcggacaataaggctctaggaccggtagctggccgagcagcagagctcgagggtgaacagtctcggctgcagcatgatctcataacttcattgaacgatctggaagaatcgaattctgagctatcgaaactgaagttggatctagaaggattaaagagtagtgataatgagaagagggtgaaattggaaaccgttgagactgaaaggaacttgttattggtgaaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="32201" stop="31163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31901" g_stop="31463" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E710711" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31901" e_stop="31463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTT</genome_strand>
        <mrna_strand>TGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAAGGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710996" ref_strand="+" ref_description="SGN-E710996 [FA57CE12]">
      <seq>atggcggacgagaatgctgcccacggagatgtttttgatgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagacaataatcacctttttcccgagaatcaagtgatcaaagagaacatggagaaatctaagcactcgattgaggaaatccccaacgaaaaagtcggagttcccgaagaaggcgaacaagtttgagtcggaccataaggctctaggaccggtagctggccgagcagcagagctcgagggtgaacagtctcggctgcagcatgatctcataacttcatcgaacgatctggaagaatcgaattctgagcctatcgaaactgaagttggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="32239" stop="31249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31939" g_stop="31549" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E710996" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31939" e_stop="31549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGT-GGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAG-CTATCGAAACTGAAGTTGGATC</genome_strand>
        <mrna_strand>ATGGCGGACGAGAATGCTGCCCACGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGACAATAATCACCTTTTTCCCGAGAATCAAGTGATCAAAGAGAACATGGAGAAATCTAAGCACTCGATTGAGGAAATCCCCAACGAAAAAGTCGGAGTTCCCGAAGAAGGCGAACAAGTTTGAGTCGGACCATAAGGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATCGAACGATCTGGAAGAATCGAATTCTGAGCCTATCGAAACTGAAGTTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266626" ref_strand="+" ref_description="SGN-E266626 [cLEI-5-M21]">
      <seq>ttttcttttgctcaatcaaaagggacaatcgaatgagaacaaaaatttgatcttttggaatcaaatgcagtaacaaagcaaaaccctaatccaaatcaaattcacattcttcatttctcaggtttaactatggcggacgagaatgctgccaatggagatgtttttgatgatgctgtggagatcgaaggagaggaagattcggatgctgcattgaaaactgctccgctgacacacaagatagcggcgttagagcaagagaataatcaactttttcgcgagaatcaagtgatcaaagagaagatggagaaatctaagcactcgattgaggaaatccagaacgaaaaagtggagttacagaagaaggcgaagaagtttgagtcggacaataatgctctatgaccggtagctggccgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="33346" stop="31353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33046" g_stop="32926" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32925" i_stop="31948" i_length="978">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31947" g_stop="31653" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="416" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E266626" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33046" e_stop="32926"/>
          <exon e_start="31947" e_stop="31653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTTTTGCTCAATCAAAAATCACAATCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAGGTAAGTTTTCACATTCCCAATTTTTATTCTTTTTTACTTGTTAATAATTTTTTTTAATATGAAATTGCAGAATTTGAGTATATATATATATATATATGAAAATGGATATTGAGGATCTTGTTAGTTTGGGGTTGAAGGGTAGATGTTGTTTTTGGTTGAATAAGGGAAATGCTGTATTTGTAATTCGAATTCTATGGTGATTTAGAAAATTTTTTTTGATGATTTCTGGGTCAGTGAAGTGTTTTTTTTTTGTTTTTTTTTTCCAGATTTTTTGATTTGTTTGAGTTTTTTCATGTTGGGTTATTTTTGAAAGAATTGGGTGTTATTCAGATTTTCTGATTAATTTTAGTATTTTCATTGTTGGGTGATTTTGAAAATTTTTCATTTTTGGATCACTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTCATCATTGGGTGATTTTGAAAAAAATTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTAATTTTAGTTTTTTTTATCTATGGGTGATTTTGAAAATTTTCATTTTTGGATCAGTGAATTGATTCAATTTTTTCGATTTATTTTTGTTTTTTCATCATTGGGTGATTTTGAAATTTTCATTTTTGGATCAGTGAATAATTGAGTGTTCTTCAAAATTTTCGATTAAATTTAGTTTTTTCATCATTGGGTGATTTTGAAAATTTTCATTTCTGGGTCAGTGTATTGGGTGTTTTTTTCTCGGAAACAGCCTTTATATCTGTACGAATTAGTGGTAACGTTTGTGCACACTCAACCCTCCCTAGACCCCATTTAGTGGTATCTTATCGGATATGATGATGATGTGGTTGCTGTTGTTGAAAGAGGGTGTTTTTGATCTTCTTAAAGTTTTTGTTTTTTTGGATTTATTGATTGGTATGAATATTCTCGGATTTCCAGTTTATTTGGGACTGAGGCGTAGTCGTTGTTGGATTAATTTCAGGTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGC</genome_strand>
        <mrna_strand>TTTTCTTTTGCTCAATCAAAAGGGACAATCGAATGAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTATGACCGGTAGCTGGCCGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E248472" ref_strand="+" ref_description="SGN-E248472 [cLEF-59-F10]">
      <seq>gcataggggctttgtgatgatatcttactatgacatccgagctgctcgaactgcaatgcgtgctctacaaaataagcccttgagacgaagaaagctcgacattcatttttccattcccaaggaaaatccgtcagagaaagatattaaccaaggaactcttgtcgtgttcaacttggatccatcggtatccaatgaggatcttcggcaaatctttggagtgtatggggaagtcaaggagattagagaaacaccacataaacgccatcacaaattcatcgaattctacgatgtcagagcagctgatgcagctcttaaagcattaaatcgtagtgacattgctggaaagcggataaaacttgaacccagccgacctggtggagcccgtcgaaatttgatgcagcaactaactcaagaattggaacacgatgaaattcgatcatttaggcactcagttggatcaccggtagccagctctcctccaggcagctggtcaaacttcggcagtccagttgaacccaacccgttgcgaggttatagtcaatcacctggtctgagaaatctcagccctgtaaatggtaatcttatgccagggctggcctctattcttcctggacacctttcaagtccgaagattgcacccattggtaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="42064" stop="44772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42364" g_stop="42484" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42485" i_stop="42556" i_length="72">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42557" g_stop="42673" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="238" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42674" i_stop="42789" i_length="116">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42790" g_stop="42941" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="390" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42942" i_stop="44080" i_length="1139">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44081" g_stop="44172" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="482" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44173" i_stop="44303" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44304" g_stop="44472" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="651" r_length="169" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E248472" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42364" e_stop="42484"/>
          <exon e_start="42557" e_stop="42673"/>
          <exon e_start="42790" e_stop="42941"/>
          <exon e_start="44081" e_stop="44172"/>
          <exon e_start="44304" e_stop="44472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATAGGGGCTTTGTGATGATATCTTACTATGACATCCGAGCTGCTCGAACTGCAATGCGTGCTCTACAAAATAAGCCCTTGAGACGAAGAAAGCTCGACATTCATTTTTCCATTCCCAAGGTTTGAATCCACTAAGACATATGCTAACTTGGAAAGACAATTCTAACTAATGTCCTTTGTTGTAATATCCAGGAAAATCCGTCAGAGAAAGATATTAACCAAGGAACTCTTGTCGTGTTCAACTTGGATCCATCGGTATCCAATGAGGATCTTCGGCAAATCTTTGGAGTGTATGGGGAAGTCAAGGAGGTATCAAGTTTACTTGATTGTTCACTGTTACTGCTATATTATTTTGTTGTTCTTGTGTTTATCCATAATTCTTGAACTTTTAAGCTTCACTAAATCATGTTGTATGCAAAATACAGATTAGAGAAACACCACATAAACGCCATCACAAATTCATCGAATTCTACGATGTCAGAGCAGCTGATGCAGCTCTTAAAGCATTAAATCGTAGTGACATTGCTGGAAAGCGGATAAAACTTGAACCCAGCCGACCTGGTGGAGCCCGTCGAAAGTACGTTCTGGCTCTGCTATAAAAAAATTGCATTTCTTTTCACTTTCCGGTGTAATTTCGCGATGAAATTTATAAGCTAGCATTTTTGCCCTAATTTACAAGTGCTTATGGACAGACATGCATGAGAAAAAGGAAGATAACTTAATGCAAAAGAAAGAAAGTGAAGCGAAAAGTAATCCCTTTAGTGTTTAGCATGCTAGCATTTCTTGGATCTTTTTGCATGTTGATCAGTGATGAATGCTCTGTTAGGAGCCTACAACCTCATTACTCCATTTGAGCGTAACTATTGACTGTCAAATTGTATCACTGAAAGTTGACTGGTGATAAGAGTTACTTTCTTTTTGGGTATTATCTTCAGTTAGTAGCCTGCAACACCATTGATCCGGTAATAAAAGAACACCACTGCTCCACTAATATGGATTTTGGACTTGACTTACTGTCAAAATATAGCTGCAAAAGTGCAATTCTGTTACAAATATGCTTGGTTATGTTATACTTGCGTTTCTGTTTCAAGTATTACAGGGTTTTTAACTGCCTCCTTCACATCTTTAGCCTAATAATTCTATGGATGAATTATGACAGATGGCAATGTTGCAGCCACATATTTTACTATGCCTTATCAGTTATATGTATTACTATGGTGCTATGATAATTTTTCTACTTTGTAATGTATCTGATGTTCGAATTTCTCTAGTGACTTCTCTGAGTTTAGTTCTTAAGGGTGAATTTTTATTTATTTTCACTTGTTGAATGTACTATAGACTGTTGGCCATGATTTTACTCATTCTATGTTTTTTATAGCATTGGTAATTTAGGCAGGTCTCTGTTACTTGTATCACGCTTGCATTTCCATGTGAAGATATTTGGCTGCAGGCCTTGTTCTAGGGTGATATTTGGACTCTTCCAGCACTCCCCTCGCCTTTCAAAAAATTTGCTTTGAATGTTACAAACAGCTGATGAGTATGAATCAAATACATATAAAGAACGTCTCAAAGACGCATTAGTGTATTCTCCAGCCTTCTCCTTTTCCCAAGAAATCTGTTATAATCACTCTCCTTCTGCAGAGGCTTATTGTTTTTGGTATATTATGCAAGTTGTTAACCAGTTAGGAAGAAACTTAATTTTCTTTTCATGTCTAGTTTGATGCAGCAACTAACTCAAGAATTGGAACACGATGAAATTCGATCATTTAGGCACTCAGTTGGATCACCGGTAGCCAGCTCTCCTCCAGGTATTTCCATTATCGTAATTGATGCTGTTTTTAATATTTCTTTAATTGTTGATTTAGTAGCATAACTGCTGATGTCAACCTGGGAGAGTCTGACCTGATAAATGATGTGATAATGGTGTTATATCTAACAGGCAGCTGGTCAAACTTCGGCAGTCCAGTTGAACCCAACCCGTTGCGAGGTTATAGTCAATCACCTGGTCTGAGAAATCTCAGCCCTGTAAATGGTAATCTTATGCCAGGGCTGGCCTCTATTCTTCCTGGACACCTTTCAAGTCCGAAGATTGCACCCATTGGTAAAGA</genome_strand>
        <mrna_strand>GCATAGGGGCTTTGTGATGATATCTTACTATGACATCCGAGCTGCTCGAACTGCAATGCGTGCTCTACAAAATAAGCCCTTGAGACGAAGAAAGCTCGACATTCATTTTTCCATTCCCAAG........................................................................GAAAATCCGTCAGAGAAAGATATTAACCAAGGAACTCTTGTCGTGTTCAACTTGGATCCATCGGTATCCAATGAGGATCTTCGGCAAATCTTTGGAGTGTATGGGGAAGTCAAGGAG....................................................................................................................ATTAGAGAAACACCACATAAACGCCATCACAAATTCATCGAATTCTACGATGTCAGAGCAGCTGATGCAGCTCTTAAAGCATTAAATCGTAGTGACATTGCTGGAAAGCGGATAAAACTTGAACCCAGCCGACCTGGTGGAGCCCGTCGAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGCAGCAACTAACTCAAGAATTGGAACACGATGAAATTCGATCATTTAGGCACTCAGTTGGATCACCGGTAGCCAGCTCTCCTCCAG...................................................................................................................................GCAGCTGGTCAAACTTCGGCAGTCCAGTTGAACCCAACCCGTTGCGAGGTTATAGTCAATCACCTGGTCTGAGAAATCTCAGCCCTGTAAATGGTAATCTTATGCCAGGGCTGGCCTCTATTCTTCCTGGACACCTTTCAAGTCCGAAGATTGCACCCATTGGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327052" ref_strand="+" ref_description="SGN-E327052 [cTOC-18-J19]">
      <seq>aagaattggaacacgatgaaattcgatcatttaggcactcagttggatcaccggtagccagctctcctccaggcagctggtcaaacttcggcagtccagttgaacccaacccgttgcgaggttatagtcaatcacctggtctgagaaatctcagccctgtaaatggtaatcttatgccagggctggcctctattcttcctggacacctttcaagtccgaagattgcacccattggtaaagatcctgcaagggttggccatttgaatcaggtaacttctagtccaaagtcatctcaaggaatgggttatcagcattctttttcagtccctgagcagaaaccggctttaagcataggatctgtgccatttggtaactctaaggcatccggtactggaacgctttctggtccacagtttctttggggtagtccccctattcactcagagcgatccgactctcctatctggccagcttcatcaatggcacgtccattcgcatcaaatggacaaggacagggctatctccattcccgtaggcaaagctctttccttggatcacatcacgtggggtctgctccatctggaaatcctttggataggcattttggttttttcccagaatctcctcaaacatcatatatgaacccacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="43801" stop="45182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44101" g_stop="44172" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44173" i_stop="44303" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44304" g_stop="44882" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="651" r_length="579" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E327052" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44101" e_stop="44172"/>
          <exon e_start="44304" e_stop="44882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGGAACACGATGAAATTCGATCATTTAGGCACTCAGTTGGATCACCGGTAGCCAGCTCTCCTCCAGGTATTTCCATTATCGTAATTGATGCTGTTTTTAATATTTCTTTAATTGTTGATTTAGTAGCATAACTGCTGATGTCAACCTGGGAGAGTCTGACCTGATAAATGATGTGATAATGGTGTTATATCTAACAGGCAGCTGGTCAAACTTCGGCAGTCCAGTTGAACCCAACCCGTTGCGAGGTTATAGTCAATCACCTGGTCTGAGAAATCTCAGCCCTGTAAATGGTAATCTTATGCCAGGGCTGGCCTCTATTCTTCCTGGACACCTTTCAAGTCCGAAGATTGCACCCATTGGTAAAGATCCTGCAAGGGTTGGCCATTTGAATCAGGTAACTTCTAGTCCAAAGTCATCTCAAGGAATGGGTTATCAGCATTCTTTTTCAGTCCCTGAGCAGAAACCGGCTTTAAGCATAGGATCTGTGCCATTTGGTAACTCTAAGGCATCCGGTACTGGAACGCTTTCTGGTCCACAGTTTCTTTGGGGTAGTCCCCCTATTCACTCAGAGCGATCCGACTCTCCTATCTGGCCAGCTTCATCAATGGCACGTCCATTCGCATCAAATGGACAAGGACAGGGCTATCTCCATTCCCGTAGGCAAAGCTCTTTCCTTGGATCACATCACGTGGGGTCTGCTCCATCTGGAAATCCTTTGGATAGGCATTTTGGTTTTTTCCCAGAATCTCCTCAAACATCATATATGAACCCACATG</genome_strand>
        <mrna_strand>AAGAATTGGAACACGATGAAATTCGATCATTTAGGCACTCAGTTGGATCACCGGTAGCCAGCTCTCCTCCAG...................................................................................................................................GCAGCTGGTCAAACTTCGGCAGTCCAGTTGAACCCAACCCGTTGCGAGGTTATAGTCAATCACCTGGTCTGAGAAATCTCAGCCCTGTAAATGGTAATCTTATGCCAGGGCTGGCCTCTATTCTTCCTGGACACCTTTCAAGTCCGAAGATTGCACCCATTGGTAAAGATCCTGCAAGGGTTGGCCATTTGAATCAGGTAACTTCTAGTCCAAAGTCATCTCAAGGAATGGGTTATCAGCATTCTTTTTCAGTCCCTGAGCAGAAACCGGCTTTAAGCATAGGATCTGTGCCATTTGGTAACTCTAAGGCATCCGGTACTGGAACGCTTTCTGGTCCACAGTTTCTTTGGGGTAGTCCCCCTATTCACTCAGAGCGATCCGACTCTCCTATCTGGCCAGCTTCATCAATGGCACGTCCATTCGCATCAAATGGACAAGGACAGGGCTATCTCCATTCCCGTAGGCAAAGCTCTTTCCTTGGATCACATCACGTGGGGTCTGCTCCATCTGGAAATCCTTTGGATAGGCATTTTGGTTTTTTCCCAGAATCTCCTCAAACATCATATATGAACCCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543714" ref_strand="+" ref_description="SGN-E543714 [TUS-65-K19]">
      <seq>attaacatgggtgtctcctgcacatatcgtctccttttacgaggcattcaatgggaaagaagtgggaaaagtttaacagtgaaaaagttgcatcattggcttacgcacgtatccagggaaaggtagctctggttactcacttccaaaactcaagcttgatgaatgaagacaaaagatgccgaccaattcttttccagtcagagggccaagaggcagctgatgaggaaacgttgccatccagcaatctgaatatttgtatccgtcggcctgatgggtcatattcaggagattctcttgatagcccaacaagcgatatagatgggagaccagagctattcactggaagcagctgaccctcaaccgtggcaatgggtgttctaactgtgaatagaaattcaagtacataatttgtcaatgaaaccaggaaactgcatatagttacttatgtgagctagttgtgtctgctttttggatggaggacactctagagcatgtaggacgaattgttacagaggccgcgagcattttgtttatatgtagaatgatgacaattgatctatttaacagtgggggaaagtaaaataaggttttaagcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="45303" stop="47133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45603" g_stop="45644" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45645" i_stop="46089" i_length="445">
            <donor d_prob="0.969" d_score="0.95"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46090" g_stop="46269" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="224" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46270" i_stop="46457" i_length="188">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46458" g_stop="46841" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="608" r_length="384" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543714" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45603" e_stop="45644"/>
          <exon e_start="46090" e_stop="46269"/>
          <exon e_start="46458" e_stop="46841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACAT-GGTGTCTCCTGCACATATCGTCTCCTTTTACGAGGTTGAGTTCTTTCCCAATTCCTTTTGGTGGTTTTTTTCTGGCGTGTAGCAAGCATAAACTTGTAATAACCACATGGTCCCTCCATCCCAGTTTATGTTGCAGTGTTTGACTAGACGCGGAGTATAAGAAAAAAAGGAAGACTTGTGGTGTAAAATAGGCCATAGACATCTCTGAGACTCAAACTCATCTAAGTGTAAATGAGAAGTTTAAAGTAAAATTGTTTTTAAATAAGGAAGTATGGCATTCTTTTGAAACAGGCTAAAAAAGGAGAATATGATGCATAAATTGGGACATAGGGAGTATTTATTTGGTGAAGATTTTGCAGCCATTGAATGTGGTGTATTTCTCTCTTTCAGGAAAATTTTGCATGTATATGTTTGTCTCCATAACTAATCTGGATGTTCTGTATATTCTAGAATGGCTATAATCTTAGAAACTTGTGCAGGCATTCAAT-GGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAGGTACTGAATTAGTCATAGAGTAGAGTGTAACTGAATAACTCCCTTTGTGGTGAATTAGCCTTGTTAGGCTTACGGAAACATCTAGATTGTCTGAAAAACAAGTCTATCCTCCATAACTGTTGTCCGCTAGCAGAAATAACATGGTGTTCATATGCTTATAAACTGATTGCTTTTTTGTTTTTTTCCAGGAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTCAGCCAACTT</genome_strand>
        <mrna_strand>ATTAACATGGGTGTCTCCTGCACATATCGTCTCCTTTTACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCAATGGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAG............................................................................................................................................................................................GAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543713" ref_strand="+" ref_description="SGN-E543713 [TUS-65-K19](-)">
      <seq>attaacatggtgtctcctgcacatatcgtctccttttacgaggcattcaatggaaagaagtgggaaaagtttaacagtgaaaaagttgcatcattggcttacgcacgtatccagggaaaggtagctctggttactcacttccaaaactcaagcttgatgaatgaagacaaaagatgccgaccaattcttttccagtcagagggccaagaggcagctgatgaggaaacgttgccatccagcaatctgaatatttgtatccgtcggcctgatgggtcatattcaggagattctcttgatagcccaacaagcgatatagatgggagaccagagctattcactggaagcagctgaccctcaaccgtggcaatgggtgttctaactgtgaatagaaattcaagtacataatttgtcaatgaaaccaggaaactgcatatagttacttatgtgagctagttgtgtctgctttttggatggaggacactctagagcatgtaggacgaattgttacagaggccgcgagcattttgtttatatgtagaatgatgacaattgatctatttaacagtgggggaaagtaaaataaggttttaagcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="45303" stop="47133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45603" g_stop="45644" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45645" i_stop="46089" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46090" g_stop="46269" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="222" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46270" i_stop="46457" i_length="188">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46458" g_stop="46841" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="606" r_length="384" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543713" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45603" e_stop="45644"/>
          <exon e_start="46090" e_stop="46269"/>
          <exon e_start="46458" e_stop="46841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACATGGTGTCTCCTGCACATATCGTCTCCTTTTACGAGGTTGAGTTCTTTCCCAATTCCTTTTGGTGGTTTTTTTCTGGCGTGTAGCAAGCATAAACTTGTAATAACCACATGGTCCCTCCATCCCAGTTTATGTTGCAGTGTTTGACTAGACGCGGAGTATAAGAAAAAAAGGAAGACTTGTGGTGTAAAATAGGCCATAGACATCTCTGAGACTCAAACTCATCTAAGTGTAAATGAGAAGTTTAAAGTAAAATTGTTTTTAAATAAGGAAGTATGGCATTCTTTTGAAACAGGCTAAAAAAGGAGAATATGATGCATAAATTGGGACATAGGGAGTATTTATTTGGTGAAGATTTTGCAGCCATTGAATGTGGTGTATTTCTCTCTTTCAGGAAAATTTTGCATGTATATGTTTGTCTCCATAACTAATCTGGATGTTCTGTATATTCTAGAATGGCTATAATCTTAGAAACTTGTGCAGGCATTCAATGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAGGTACTGAATTAGTCATAGAGTAGAGTGTAACTGAATAACTCCCTTTGTGGTGAATTAGCCTTGTTAGGCTTACGGAAACATCTAGATTGTCTGAAAAACAAGTCTATCCTCCATAACTGTTGTCCGCTAGCAGAAATAACATGGTGTTCATATGCTTATAAACTGATTGCTTTTTTGTTTTTTTCCAGGAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTCAGCCAACTT</genome_strand>
        <mrna_strand>ATTAACATGGTGTCTCCTGCACATATCGTCTCCTTTTACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCAATGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAG............................................................................................................................................................................................GAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304294" ref_strand="+" ref_description="SGN-E304294 [cLEX-12-I3]">
      <seq>ttaacatggtgtctcctgcacatatcgtctccttttacgaggcattcaatggaaagaagtgggaaaagtttaacagtgaaaaagttgcatcattggcttacgcacgtatccagggaaaggtagctctggttactcacttccaaaactcaagcttgatgaatgaagacaaaagatgccgaccaattcttttccagtcagagggccaagaggcagctgatgaggaaacgttgccatccagcaatctgaatatttgtatccgtcggcctgatgggtcatattcaggagattctcttgatagcccaacaagcgatatagatgggagaccagagctattcactggaagcagctgaccctcaaccgtggcaatgggtgttctaactgtgaatagaaattcaagtacataatttgtcaatgaaaccaggaaactgcatatagttacttatgtgagctagttgtgtctgctttttggatggaggacactctatagcatgtaggacgaattgttacagaggccgcgagcattttgtttatatgtagaatgatgacaattgatctatttaacagtgggggaaagtaaaataaggttttaagcattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="45304" stop="47133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45604" g_stop="45644" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45645" i_stop="46089" i_length="445">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46090" g_stop="46269" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="221" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46270" i_stop="46457" i_length="188">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46458" g_stop="46841" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="605" r_length="384" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E304294" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45604" e_stop="45644"/>
          <exon e_start="46090" e_stop="46269"/>
          <exon e_start="46458" e_stop="46841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGTGTCTCCTGCACATATCGTCTCCTTTTACGAGGTTGAGTTCTTTCCCAATTCCTTTTGGTGGTTTTTTTCTGGCGTGTAGCAAGCATAAACTTGTAATAACCACATGGTCCCTCCATCCCAGTTTATGTTGCAGTGTTTGACTAGACGCGGAGTATAAGAAAAAAAGGAAGACTTGTGGTGTAAAATAGGCCATAGACATCTCTGAGACTCAAACTCATCTAAGTGTAAATGAGAAGTTTAAAGTAAAATTGTTTTTAAATAAGGAAGTATGGCATTCTTTTGAAACAGGCTAAAAAAGGAGAATATGATGCATAAATTGGGACATAGGGAGTATTTATTTGGTGAAGATTTTGCAGCCATTGAATGTGGTGTATTTCTCTCTTTCAGGAAAATTTTGCATGTATATGTTTGTCTCCATAACTAATCTGGATGTTCTGTATATTCTAGAATGGCTATAATCTTAGAAACTTGTGCAGGCATTCAATGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAGGTACTGAATTAGTCATAGAGTAGAGTGTAACTGAATAACTCCCTTTGTGGTGAATTAGCCTTGTTAGGCTTACGGAAACATCTAGATTGTCTGAAAAACAAGTCTATCCTCCATAACTGTTGTCCGCTAGCAGAAATAACATGGTGTTCATATGCTTATAAACTGATTGCTTTTTTGTTTTTTTCCAGGAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTCAGCCAACTT</genome_strand>
        <mrna_strand>TTAACATGGTGTCTCCTGCACATATCGTCTCCTTTTACGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCAATGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAG............................................................................................................................................................................................GAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTATAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231683" ref_strand="+" ref_description="SGN-E231683 [cLED-4-K18]">
      <seq>atcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcacgtctgttctctataacaatatttcacgtatttcatgttatgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="50101" stop="47062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49801" g_stop="49709" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="193" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47693" g_stop="47359" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="528" r_length="335" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E231683" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49801" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTTATATAATATGT</genome_strand>
        <mrna_strand>ATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395962" ref_strand="+" ref_description="SGN-E395962 [TUS-18-P5]">
      <seq>aatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgtggcgcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcacgtctgttctctataaccatatttcacgtatttcatgtttatgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="50102" stop="47064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49802" g_stop="49709" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="194" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47693" g_stop="47366" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="523" r_length="329" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E395962" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49802" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATG-TTATGTTATAT</genome_strand>
        <mrna_strand>AATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTGGCGCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACCATATTTCACGTATTTCATGTTTATGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226758" ref_strand="+" ref_description="SGN-E226758 [cLEL-26-N7](-)">
      <seq>tgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcacgtctgttctctataacaatatttcacgtatttcatgttatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="50068" stop="47062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49768" g_stop="49709" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="160" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47693" g_stop="47370" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="484" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E226758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49768" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</genome_strand>
        <mrna_strand>TGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218374" ref_strand="+" ref_description="SGN-E218374 [cLEL-18-H2](-)">
      <seq>aatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggaccaaaagttaagctcctccaattttaaagaccataaattaagaccggtaatagtgaaacgagtgttgaaaataatgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcacgtctgttctctataacaatatttcacgtatttcatgttatgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="48197" stop="47062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47897" g_stop="47790" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47693" g_stop="47370" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="433" r_length="325" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="451"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E218374" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47897" e_stop="47790"/>
          <exon e_start="47693" e_stop="47370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCT-CTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAAT-TTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</genome_strand>
        <mrna_strand>AATGCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGACCAAAAG-TTAAGCTCCTCCAATTTTAAAGACCATAAATTAAGACCGGTAATAGTGAAACGAGTGTTGAAAATAATGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E226864" ref_strand="+" ref_description="SGN-E226864 [cLEL-26-N7](-)">
      <seq>ctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcacgtctgttctctataacaatatttcacgtatttcatgttatgttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="48178" stop="47062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47878" g_stop="47790" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47693" g_stop="47370" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="413" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="430"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E226864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47878" e_stop="47790"/>
          <exon e_start="47693" e_stop="47370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</genome_strand>
        <mrna_strand>CTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E715202" ref_strand="+" ref_description="SGN-E715202 [FB13CE08]">
      <seq>cccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtaacccatggaattttcccaaatcggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacctttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaagaacattagataggatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattacacgtccgttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="50893" stop="47101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50593" g_stop="50455" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="235" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="304" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="433" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="533" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47693" g_stop="47401" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="825" r_length="292" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E715202" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>826</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50593" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTA</genome_strand>
        <mrna_strand>CCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTAACCCATGGAATTTTCCCAAATCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACCTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCT-AAGAACATTAGATAGGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTACACGTCCGTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E746241" ref_strand="+" ref_description="SGN-E746241 [GI|47104813]">
      <seq>ctttcgccggtaaggcggtgaaactctcaccatcttcttctgaaatcagtggaaatgggagaattacaaggaggcaggcttgggcttggcagcagtcttcccagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttgttgctcaactctgtgacagtcattgtgagctctatttaacggaactcttatcaaattgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52274" stop="47114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51963" g_stop="51812" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="256" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="572" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="668" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="669" r_stop="737" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="866" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="966" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47693" g_stop="47417" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="967" r_stop="1243" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1246" polyA_stop="1263"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E746241" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1139</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51963" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATT</genome_strand>
        <mrna_strand>AGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379216" ref_strand="+" ref_description="SGN-E379216 [TUS-3-A6](-)">
      <seq>aagcaacgtcttcagcaacttcctaactgtgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttagttaaaaattataattttctactttggtttctgcctgttacccaatcttgaacttttgtgtaatcagcagattatgtcatttaggttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatggaattttcccaaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttggacgacagattcatgtcctcatactgtgaaagccgtcgccaataaggctccatttgaagttattagtttggcaggatcaatagctgatgctcttcaaatctaaagaacattagataagatcagttatagtgaaacgagtgttgaaaatttgttcactggcatgatttgctgttgtaacggaaacttgtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="50422" stop="47174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50122" g_stop="50087" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49994" g_stop="49709" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="322" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="422" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47693" g_stop="47474" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="642" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E379216" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50122" e_stop="50087"/>
          <exon e_start="49994" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTG</genome_strand>
        <mrna_strand>AAGCAACGTCTTCAGCAACTTCCTAACTGTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261861" ref_strand="+" ref_description="SGN-E261861 [cLEG-61-L11]">
      <seq>tctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaagtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaaagtagtgcttatgtgacccatggaattttcccaaccggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttacttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52140" stop="47365"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51840" g_stop="51812" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="345" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="441" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="510" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="639" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.783" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="738" r_length="99" r_score="0.970"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47693" g_stop="47665" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="767" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E261861" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51840" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTACTTTTGG</genome_strand>
        <mrna_strand>TCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAAGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAAGTAGTGCTTATGTGACCCATGGAATTTTCCC-AACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTACTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E704352" ref_strand="+" ref_description="SGN-E704352 [FA24AC02]">
      <seq>ctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtaacccatggaaaattttccaatcggtcatgggagcgttttcttcacaagaatgatggctctgagaaagcattcacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52255" stop="47371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51955" g_stop="51812" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="460" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="556" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="625" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="754" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47889" g_stop="47790" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="854" r_length="100" r_score="0.930"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96">
            <donor d_prob="0.987" d_score="0.88"/>
            <acceptor a_prob="0.960" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47693" g_stop="47671" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="855" r_stop="877" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E704352" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>877</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51955" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47790"/>
          <exon e_start="47693" e_stop="47671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATGGTAAGTAACTCTCTGAAACTACATCCACCTTCCTTTCAGTTTCAGCATCTCCTTATCATCCGAGTTTCTGACATCGCCCATGTTTTTCTTGTGTAGGCTCTGAGAAAGCATTCACTTAC</genome_strand>
        <mrna_strand>CTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTAACCCATGGAAAATTTTCCAATCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG................................................................................................GCTCTGAGAAAGCATTCACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E720182" ref_strand="+" ref_description="SGN-E720182 [FC10AC03]">
      <seq>gggcgattggcggccaatcggccgaattgctcggcttgtttctcacagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtaacccatggaattttcccaaatcggtcatgggagcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52282" stop="47507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51992" g_stop="51812" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="200" r_length="181" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="516" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="612" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="681" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="810" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47889" g_stop="47807" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="811" r_stop="893" r_length="83" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E720182" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51992" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTAAAACCCTCGGCTTGTTTCTCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTT</genome_strand>
        <mrna_strand>GGCCGAATTGCTCGGCTTGTTTCTCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTAACCCATGGAATTTTCCCAAATCGGTCATGGGAGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E261065" ref_strand="+" ref_description="SGN-E261065 [cLEG-65-A15]">
      <seq>tctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtgaaggtgataagagaatcgtcaggctaaaagagggtaatcctgctggctgtcatgtggtcattgttgacgatttggtccagtctggaggtaccctaattgaatgccagaaagttttggcctctcatggtgcatcaaaagttagtgcttatgtgacccatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52140" stop="47536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51840" g_stop="51812" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="345" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="441" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="510" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49709" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="639" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.783" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47889" g_stop="47836" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="693" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E261065" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51840" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49709"/>
          <exon e_start="47889" e_stop="47836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAGGTACTACTGCCTCTTTAGATCTGATAAGGGTTTGTAATATATTTGTCAAGTGTACTTAAATATGTCTACTCCCCAGATGTGACAATAATTTGAAACTTTTTAACACCTCTTGGTCCAGCTGGTCTCATGGAACTCTGGTTTTACCGTGTTCTTTACTCTTATTTATATACTAGTTCTCGAACACTTACGTTGCACGTGTATCCCATGTTATTTAATACCAAAACATTTCAAATGATATAATTATTTTAGAATAATTGATGCATTATACAATGTTTAAAGGGTAAAAATGATGTTTCTGGTAAAACATTCAACTAAGGTTGCAACTTGCAAAGATCAATAGAATCTGAAGAATTTCTGATTGTATTGATAAAAACTTTTTCTTTTAATCATGTGGGATACACTATATTATTGGTTAAAAAAAAGATTACTACTTCAATTATATGATTTGTCAAGATTGCCAAATATCTAACACTATATTACCATACAAAATGAAAAAAAAAAAGACCAATCAATAAAAGATTACATAAGAACTATAAGATGTGAAAATATAAAGTGTAATGGACTAATATTTTCTATTCAATTTATAAAGAGAGAAATTGTGTATATGAAAGGTTGTGAATGAATGTATTTAATTGTAGAAGCTAAAAAGTTTAGCAATTAAAGTCATTAAGAAGTGAAAAATAATAAATTGTGACATCTAACCATGTATTCTCTTCAATTAAATATTGATATTGTATGAATCTCTCCATATGCTCTAACCTCTCTCTTCATATGCTCTAATGTTTAAGTTTTTTTAATCTAAAACAGTAATTGTTTTAAGTGCTCAAAATTCAGCAATTAAGAAGAAAAACTGTTAATGCAACTCAATCATAATGGCAAAAGGAATACTCATAAATGCACTTCAAATTATTACAGTAACATTTTAGTGGTATGTAAAAAGTTTTCTGTTATGGAACTTAAATTACTATTTAATAATAATAATAATAATAATCAATAATAATAATATAATGGTATTATTGTAGTAACTCAACTATATAGGGTTATTTTGGTATTTCAACTTTCAATTTTTTTGTTCCCACTTATAATAATGGCATAATACATATATTGAAACCCTAAACTTGGCTTCAAATTTTAACTTTGATATCTAACTTTCATAATGCACAAACAAACAATTTAACTATTCAACTTTTAAACAAATAAACACATGAGTCCTACATGGAAAAATACACGTAAGACACCACATAAGACAAAAAATGACATGTAGGACGTGTGTGTCTATTTGTTCAATTTTATAAAGTTTAAGTGTCTACTTGTGCAAACTCAAAATTGAAGGGCATATATGTGATTCGAAGCCAAGTTAAAGGGTATATTTATGTATTATGCCTATAATAATATATGATTTTTAGTTTTAATGGGGGTGTAAGACGGATCTGTCTTTGGTTGGTCGAGTAATTGTTCTGATTGCTCTGTGTCATTATTTACCTTCTTGCCTTCAGCAATGAGGAGATTTCGGGGGTTTATACCTTCTAACTGGGTGAGGCAAACTTAAGGATCCCAACAATCCATGTCAAATTGGACTATTGAATTAGAAAACCAAGAAAAGAAGGGAAAGGAGTTAGGAAGTTAGAGAATGCACAGTAAGAGTCAATTCACTTTAAAACTAGCAGCATTCTTAAAGTCACAGAAATCTCCTTTTAAGGTCCACCTCTACCTTCTAATGCACTGTTGTCTAAAGGCGCGGTGCCACTCAACTTTGATGAGTTCGTTCATATGACAAGTTGCTAATACTGTACTAATTTGATGCTATGGTTAACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGA</genome_strand>
        <mrna_strand>TCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237827" ref_strand="+" ref_description="SGN-E237827 [cLED-18-D13]">
      <seq>aagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcactaaagtgcgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52205" stop="49515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51905" g_stop="51812" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="410" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="506" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="575" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49815" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="598" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E237827" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51905" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGA</genome_strand>
        <mrna_strand>AAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCACTAAAGTGCGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E271785" ref_strand="+" ref_description="SGN-E271785 [cLEM-8-K21]">
      <seq>tcacagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttatctgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52269" stop="49622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51969" g_stop="51812" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="474" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="570" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="639" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.726" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49827" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="650" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E271785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51969" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49827"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCAC</genome_strand>
        <mrna_strand>TCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327487" ref_strand="+" ref_description="SGN-E327487 [cTOC-19-F16]">
      <seq>acagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaaagaggtttcacagcaactagttcattatcccactgttatctgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52267" stop="49622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51967" g_stop="51812" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="472" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="568" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49926" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="637" r_length="69" r_score="0.957"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88">
            <donor d_prob="0.978" d_score="0.94"/>
            <acceptor a_prob="0.726" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="49837" g_stop="49828" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="647" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E327487" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51967" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49926"/>
          <exon e_start="49837" e_stop="49828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGG-AAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCA</genome_strand>
        <mrna_strand>ACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAAGAGGTTTCAC-AGCAACTAGTTCATTATCCCACT........................................................................................GTTATCTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E379496" ref_strand="+" ref_description="SGN-E379496 [TUS-3-A6]">
      <seq>tgtcattacaacaataacatactcattatagttccactatggggagagtgggttgtacacagccattatcgctacctttgaagcttccttcatttgttggtgttgtgaatagtcttatgactaaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttagttaaaaattataattttctactttggtttctgcctgttacccatcttgaacttttgtgtaatcagcagattatgtcatttangttatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="51580" stop="49529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51280" g_stop="51156" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51155" i_stop="50771" i_length="385">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="441" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="537" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49829" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="702" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E379496" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51280" e_stop="51156"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGC</genome_strand>
        <mrna_strand>TGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAG.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCC-ATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTANGTTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395754" ref_strand="+" ref_description="SGN-E395754 [TUS-17-F10]">
      <seq>ttttcattacaacaataacatactcattatagttccactatggggagagtgggttgtacacagccattatcgctacctttgaagcttccttcatttgttggtgttgtgaatagtcttatgactaaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttctttatcccactgttagttaaaaattataattttctactttgggtttctgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="51581" stop="49587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51281" g_stop="51156" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51155" i_stop="50771" i_length="385">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="442" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="538" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49887" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="647" r_length="109" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E395754" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51281" e_stop="51156"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTT-GGTTTCTGCC</genome_strand>
        <mrna_strand>TTTTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAG.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCTTTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGGTTTCTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E210452" ref_strand="+" ref_description="SGN-E210452 [cLEC-35-C4]">
      <seq>tgtcattacaacaataacatactcattatagttccactatggggagagtgggttgtacacagccattatcgctacctttgaagcttccttcatttgttggtgttgtgaatagtcttatgactaaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcctaactctgaaaagatagttatagcctttcctgatgatggagcttggaagaggtttcacaagcaactagttcattatcccactgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="51580" stop="49621"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51280" g_stop="51156" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51155" i_stop="50771" i_length="385">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="441" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50087" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="537" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49994" g_stop="49921" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="611" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E210452" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51280" e_stop="51156"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50087"/>
          <exon e_start="49994" e_stop="49921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAGGTGGGCTGGAGTCCTACTGGGCTTTTTTGTATGTGTTTTTTCAATAAATTATCTTGATTGTAGTGACATTCTAATGTCATTTTATTTTCCAGATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAG</genome_strand>
        <mrna_strand>TGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAG.................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG............................................................................................ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687706" ref_strand="+" ref_description="SGN-E687706 [T3_tus_79_I15]">
      <seq>tttacgcatagactttattttctagtagggtgtgaaacagatgcttggtactaaagttcaattgaggaaagactacaattagccagttattatactttaatctgggattagtttcttcagtttagtggtaaaaaaggtgattgttttcaacaatagccagggtaaacaagaaggcttataagttataacatcatttttgcattggttacacaaagttcgattatttagttcctgcatattatgtaattggccaaataatcaggctttcaattgacaatttgtatgctaatagctttgaaatgatgctattattgtaccgttgttagcattgaatcttacatgcggcaaatgcttatcaatatgtggattcatgtaccaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaagggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactggaattccactgctgaagcaacgtcttcagcaacttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="51446" stop="49799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51149" g_stop="50455" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50182" g_stop="50099" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="780" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E687706" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51149" e_stop="50455"/>
          <exon e_start="50182" e_stop="50099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAA-GGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCT</genome_strand>
        <mrna_strand>TTTACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254185" ref_strand="+" ref_description="SGN-E254185 [cLEG-34-B17]">
      <seq>atccccggggctgcatgctactgtggggttttgatggagaattcagctatgaagaagatgaaggggcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52269" stop="49835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51963" g_stop="51812" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="161" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="477" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50135" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="525" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E254185" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51963" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGA</genome_strand>
        <mrna_strand>GCTGCATGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGGGGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311249" ref_strand="+" ref_description="SGN-E311249 [cLEZ-16-J5]">
      <seq>tcacagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52269" stop="49837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51969" g_stop="51812" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="474" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50137" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="520" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E311249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51969" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTG</genome_strand>
        <mrna_strand>TCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310240" ref_strand="+" ref_description="SGN-E310240 [cTOA-1-E19]">
      <seq>tctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgctgcctctgtttgagactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52261" stop="49837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51812" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="466" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50137" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="512" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E310240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTG</genome_strand>
        <mrna_strand>TCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E240290" ref_strand="+" ref_description="SGN-E240290 [cLED-25-N8]">
      <seq>aagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctattttggagataatgtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52205" stop="49854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51905" g_stop="51812" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="410" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50154" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="439" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E240290" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51905" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAGATAATGTGCT</genome_strand>
        <mrna_strand>AAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATTTTGGAGATAATGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E319020" ref_strand="+" ref_description="SGN-E319020 [cTOB-14-P4]">
      <seq>gagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgcttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggtccaaccagcttagttatctatgacatacatgcattgcaggagaggttctatcttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52264" stop="50154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51964" g_stop="51812" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50455" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="469" r_length="316" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50182" g_stop="50164" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="488" r_length="19" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E319020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51964" e_stop="51812"/>
          <exon e_start="50770" e_stop="50455"/>
          <exon e_start="50182" e_stop="50164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAGGTTGATTTAGTTGTACATTTTGTATTCACGTTACGCTCTTATTTGATGTGATTGTCGCTTTGGCTATTTGTATCCTAGATTCTTTAGTTTGATTGGTAATTGGAGTTTGCGATCTTTTGGAAGCATGACTTCTTTTTCTTTCACATAATCATGTTAGATATCCTATTTTAGCTTTTAGGCTATGCTCTTTTTGTGTGTGTTCCCAGAGAAGTCCATAGTTATACTGCAAATTTCATCTTTCTAATGGTGAAATACTTCTCTCTGTTCTGTAGGAGAGGTTCTATTTTGGAG</genome_strand>
        <mrna_strand>GAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGCTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG................................................................................................................................................................................................................................................................................GAGAGGTTCTATCTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282479" ref_strand="+" ref_description="SGN-E282479 [cLER-18-C2]">
      <seq>ttgctcgcaaaatcgcttcggaatccgatcctattaccctccattctatccactggaggagcttcgcttgtggttacccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatattccaatatcaaggggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52169" stop="50194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51869" g_stop="51812" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50494" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="335" r_length="277" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E282479" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51869" e_stop="51812"/>
          <exon e_start="50770" e_stop="50494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGT</genome_strand>
        <mrna_strand>TTGCTCGCAAAATCGCTTCGGAATCCGATCCTATTACCCTCCATTCTATCCACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTCGCTTGTGGTTACCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E310276" ref_strand="+" ref_description="SGN-E310276 [cTOA-1-G6]">
      <seq>tctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgcgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaagaaggagatgtggccactgcatttaccatggccagaataatatcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52261" stop="50213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51961" g_stop="51812" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50513" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="408" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E310276" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51961" e_stop="51812"/>
          <exon e_start="50770" e_stop="50513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATAT</genome_strand>
        <mrna_strand>TCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGCGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E246898" ref_strand="+" ref_description="SGN-E246898 [cLEF-41-L17]">
      <seq>tactgtggggttttgatggagaattcagctatgaagaagaagaagaagcaagtgcttctctattactgtgttgagaatggaagaatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaagatggaggaagaaagagatgtggccactgcatttaccatggccagaataatatcaaatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52254" stop="50213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51954" g_stop="51812" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50513" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="403" r_length="258" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E246898" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51954" e_stop="51812"/>
          <exon e_start="50770" e_stop="50513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAG-ATGGAAG-ATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATAT</genome_strand>
        <mrna_strand>TACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGAAGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGAATGGAAGAATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAAGATGGAGGAAGAAAGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E303785" ref_strand="+" ref_description="SGN-E303785 [cLEX-4-K8]">
      <seq>acagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttgagaggatggaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52267" stop="50262"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51967" g_stop="51812" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50562" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="365" r_length="209" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E303785" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51967" e_stop="51812"/>
          <exon e_start="50770" e_stop="50562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAG</genome_strand>
        <mrna_strand>ACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237696" ref_strand="+" ref_description="SGN-E237696 [cLED-19-F17]">
      <seq>tattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcacttccaaggctgtttgtcgcctcatttacgcttgtgttacctttcttcccaactggtacctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52194" stop="50277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51894" g_stop="51812" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50577" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="277" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E237696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51894" e_stop="51812"/>
          <exon e_start="50770" e_stop="50577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTG</genome_strand>
        <mrna_strand>TATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313452" ref_strand="+" ref_description="SGN-E313452 [cTOA-13-D3]">
      <seq>tttctcacagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgcgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcactttcaaagctgtttgtcgcctcatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52273" stop="50312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51973" g_stop="51812" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50612" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="321" r_length="159" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E313452" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51973" e_stop="51812"/>
          <exon e_start="50770" e_stop="50612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTAC</genome_strand>
        <mrna_strand>TTTCTCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGCGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTTCAAAGCTGTTTGTCGCCTCATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279361" ref_strand="-" ref_description="SGN-E279361 [cLEL-4-L22](-)">
      <seq>gcacgagctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgcgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttctgtgatattcgcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52268" stop="50340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51969" g_stop="51812" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50640" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="287" r_length="131" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E279361" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279361" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="51969" e_stop="51812"/>
          <exon e_start="50770" e_stop="50640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCAC</genome_strand>
        <mrna_strand>GCAC-GAG-CTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGCGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311913" ref_strand="+" ref_description="SGN-E311913 [cTOA-15-B16]">
      <seq>cagagtctctgctactgtggggttttgatggagaattcagctatgaagaagatgaagaagcaagtgcttctctattactgtgttgagatggaagatgttgctcgcaaaatcgcttcggaatccgattctattaccctccattctattaactggaggagttttgctgatggtttcccaaatctctttataaacaatgcacatgatatccgcgggcagcatgttgcttttctagcatctttcagctcacctgcagtcatctttgaacagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="52266" stop="50354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51966" g_stop="51812" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50770" g_stop="50654" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="272" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E311913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51966" e_stop="51812"/>
          <exon e_start="50770" e_stop="50654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAGGTTTTTTTTTAAAAAAAAAATCCTCTTTGCATCTCTTGTTATTGTATTTGTATCATCTGCTTGCTATATACGCAAATTTGTGGTCTTTACTTGAATTTCATGTAGAAAAAATAAGTGGGTCGAATTCGAAATCGAATAAAGGTACCTCCTTTACTTGTTAGGATTTGGGGGTGATTCGGATTGTGTATTGGGGATGGGTGATGTTTCATGTTTAAAGGGTTAAAATGGGGGAATTATGATTTGGGTCGAATTCAAAATGAGTTAATAGAGGCGGAGCTAGGATTTTGAGTTTTGGAAATTGCAGATTGGTAAGGTTCTCGATTAATTATTTTTACAAATTAAGTGGATTTTTCAAATGCAAATACATGGTTTGAGGTGAAGTTGTTGGGTTCTGTTGAACGGTAGGTGAAGCTGTAGCTCCACTCCTGCCAAAATAGAATCAAGGTTCCTCCTTTTTATTGTAGAAAGCTTTTCTTTTGGTGAGGGGGTAAGGGTGGGGGGGTTAAAGTTCTATATTGTGGTTGACAATGTTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAGGTAAAGCAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTC</genome_strand>
        <mrna_strand>CAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322786" ref_strand="+" ref_description="SGN-E322786 [cTOB-30-K5]">
      <seq>agacgcatagactttattttctagtagggtgtgaaacagatgcttggtactaaagttcaattgaggaaagactacaattagcccagtattatactttaatctgggattagtttcttcagtttagtgggtaaaaaggtgattgttttcaacaatagccagggtaaacaagaaggcttataagttataacatcatttttgcattggttacacaaagttcgattatttagttcctgcatattatgtaattggccaaataatcaggctttcaattgacaatttgtatgctaatagctttgaaatgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="51448" stop="50543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51148" g_stop="50843" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E322786" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>306</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51148" e_stop="50843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCT</genome_strand>
        <mrna_strand>AGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCCAGTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGGTAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E312246" ref_strand="+" ref_description="SGN-E312246 [cTOA-5-F9]">
      <seq>gggacaccacagtttgggggaagtgcaaaggcgaaggatgcattatggcaaaggatgagtggttgtatggaccaattgcattccattgtggttgctgtttggcatttgcagagggttttatcgaagaaaagagacccctttacgcatgtcttgctgcttgatgaggtcatgcaggaaggtgatccgatattgacggatcgtgtttgggaggcactgggtaaatcttttgctaaccaaatgaagtccactttcagcacatcaagttttgttaaggagatattcactcttggatatccaaaactcttctctatgttagaaaacctgcttgaaagaatttcacgtgatacagacgtcaaaggagttccaccagctctcagttcagaagcaaaggaccaaatgttatcttccattgaaatattccagactgctttcctaaccctctgtctgagccgtctttcagaacttgttaatactgtatttccagtgtccggtcgtggaactgttccttcaaaagatcacatagcaaggattatatcacgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="72887" stop="76478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73187" g_stop="73360" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73361" i_stop="75810" i_length="2450">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75811" g_stop="76178" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="542" r_length="368" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E312246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73187" e_stop="73360"/>
          <exon e_start="75811" e_stop="76178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACACCACAGTTTGGGGGAAGTGCAAAGGCGAAGGATGCATTATGGCAAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAGGTGTGTGAATGCATCTTTAGTTGATATGAATTGTTTCTAAGAAGTTATATATGATGCTTTTCTTATATTGAGTTATTTGTAGTCTAAAATGGCATGATCACATTAAGCCTGAATATGTTGCCTTGTGTTGGAAATATGGAATTGGTTAAGCTGCAAAATAACTTTATAGCTAGATAGAAACCGAAGACCTGGTTTGAGCCAGCTTAAGCGTGTTATCAGGATCTTTGCTAGAAAGGTTGGTTCCAAATGAAATATATATAATCCTAGGTAGTTACATTCAGGATATCTAAAAGAATACTCTATGGAAAACAATGAAATCATGGGAAGTACCGATAGACTGTCTTCACTACTCACCATTATGTAGTTGTGTTATTGATAATGCGGATATCCTTTTTCAGGGTCCTGATCCTGTGTTTAAGGGTGATTAGTGAGGCAATTAATAGGGAAAAAGTGGTCAGTATAAGTTTCGCAGAAAAAAGTACAGTATGGTGAGTACTGCTTGAGGAATAGTGAATTCTGATAGCAAGTAGTTTCTTCTTTTGGCTACTCCCAGGGAGCCCCCAAGTTTCATGACTTGTGGTAGCATTGAGCTTGAATCTGTTGCTCCGATTTGGTAACTTAGGTTTAGTTAACCTTGTTATGACTTTAACCTTGGTATGACCCAAGCGGACCAACTATGAACAATCATTTTTGGGATTGCATCAACTCTCTACTTAGAGCTTCGATTTTTGTATACGAGCTGACTCAATCTGTCTTTTGTAATTTTTGCTTTTGTTTCTGTTTGCTGCTATTAATGAAATCTACTTCAACACGAAAAAGACCAACTTTGAGCAATTTTTAAGGGAGATTAGCTGATTGTGTCCATAGGGTAAAAGAATTTTCATTCCAAAAGAAATGTATATAACCTTATGCAGTTACATTTAGGTATCCGAAAGCAATATTCTGTGGAAAATGATGAAATTAGCTGTAATCATGCGAGGTAGTGAGACACTGTCAACTCCTCATTATGTTGTTCTGTTCTCATAATGTGGGTCACAACAAGTCCTTTTGTCCCCAATTATAGCCCTGTGTTTGAGGGTGACTTATTTGACAATGAAAAGGAAACCATCGGTAATATTAAGTTAATCAGTCCATGAAATGGTTTCTGCTACCAAGGGTACAGTATGGTAAGTTCTTTTAAAGGAACGGTGAATCTGATAGAAAGTAAGGCTAACAAATCTGTAATGAAATGAGAAGTGTACTTGAGCTGATTCTATGATCCTATTTCCTAAAGATTTAAATCTTAGAAGAATAAAATTTTGAAATGAATTTTTGCTTGTCCCCCAAAAATCTTTCCTGCCATATAATCCCTGTGTAATATAACTCATGCATTGAGAGTGGGGCTGTCTTACTCCAACAATTGCTGCCTTCTCCTTTCACTGTGCAAAGGTCCACTGATCTATTAGAACAAATAATGCCCTCGTCCTACTAATTTACTTAATAATAGACTAAGAAACACAGTGAACTCTTATGTCTGGCTGTGTGACAATTTTCCGTATTTCTTAAATATCTACTCTGTTTTGATTGCAATTTGCATGTGATGAGACATGACCTAATTTAGAAATATTCCTCATTAAGTTCATTTAGTGTTTTATGATGAGGTTGGTAACAGAAAACACAAGGAAGCAAAGATGGCATCCCCTAAATATGACTGATTCAGAGATTTAATCTTCTGATGTGCCCAATTAGAAACTGAATATCTAACAATCCACCTTATTTTTCAATGGTGGACTCAACAACAGGCAATTTTATTCCTTTGCTTGTCCCTTTTTTTTTTACTCCATAAGTTAAGATTGTGCTATTGTAGTATACTAATAGGCTGTAGCTTATGGATCCGGCTGGTGAAAAATATTCAGAACAGAAAAAGTAAGGAAATATTTGTGGATTAAGTAAAGGTGACTAGCATACCTCAAGTTATTAGGATTAGTTTTCTGTGGTAGAAAGACATTCTCTTCCTTTTTTCATCTTTTAAGTCTTACCAATCAACATTAGCCAGTGCCGAAGGTATACCAGATAAACTAGTCTCCCATACTTTTCCACTCTATTTCCTCAAATTAATTGCATTGTTGAATATATATGAACTCATTGAATTTTAGATACTAGATTAGCCTTCGAACCTGTTTGGACTTCGGGACCATAGAATCATTGACACTCGCTGCTCGTTATGAGGTTCACTAAAATATAATCAGGTTATTTCTGGTCACATTACACTAAGATTAATCAAACCTAATTTATGGAATTTCATAAACGGTTAATGCTTATGCTCAATTGCAAATATATTTCTAAGAAAGACCAACCAAAGCTAAATGAAAAATTAAAGAGGGCAAGTAAGTTGTAAGATGATTAATGACACGAGGAAAAGCATGTTGTTGTTATTTCCATGGCTGCTTACATTGCTACATATTTTTCAGGAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACTGTATTTCCAGTGTCCGGTCGTGGAACTGTTCCTTCAAAAGATCACATAGCAAGGATTATATCACGAAT</genome_strand>
        <mrna_strand>GGGACACCACAGTTTGGGGGAAGTGCAAAGGCGAAGGATGCATTATGGCAAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACTGTATTTCCAGTGTCCGGTCGTGGAACTGTTCCTTCAAAAGATCACATAGCAAGGATTATATCACGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543632" ref_strand="+" ref_description="SGN-E543632 [TUS-65-I19]">
      <seq>caaaggatgagtggttgtatggaccaattgcattccattgtggttgctgtttggcatttgcagagggttttatcgaagaaaagagacccctttacgcatgtcttgctgcttgatgaggtcatgcaggaaggtgatccgatattgacggatcgtgtttgggaggcactgggtaaatcttttgctaaccaaatgaagtccactttcagcacatcaagttttgttaaggagatattcactcttggatatccaaaactcttctctatgttagaaaacctgcttgaaagaatttcacgtgatacagacgtcaaaggagttccaccagctctcagttcagaagcaaaggaccaaatgttatcttccattgaaatattccagactgctttcctaaccctctgtctgagccgtctttcagaacttgttaatactgtatttccagtgtccggtcgtggaactgttccttcaaaagatcacatagcaaggattatatcacgaattcaagaagaaatagaagccgtccagatggatgctcagttaactcttcttgtcttgcgtgagatcaacaaagttctgcttctgctttcagaaagaacagaataccagatatctgcaggtcccgaggcacgacagataacaggtcctgcaactccagcacaggtgaagaactttgcgttatgccagcatctgcaagaaattcatacccgcatatcgtctatggtggcaggattaccagctattgcaaccgatattttgtctcccgcactgggatctatctatggggttgcaggtgattcagtgacaccactattccannntcatgctgatcgactggagtcatgcatcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="72935" stop="78778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73235" g_stop="73360" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73361" i_stop="75810" i_length="2450">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75811" g_stop="76284" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="600" r_length="474" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76285" i_stop="78234" i_length="1950">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78235" g_stop="78478" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="844" r_length="244" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543632" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73235" e_stop="73360"/>
          <exon e_start="75811" e_stop="76284"/>
          <exon e_start="78235" e_stop="78478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAGGTGTGTGAATGCATCTTTAGTTGATATGAATTGTTTCTAAGAAGTTATATATGATGCTTTTCTTATATTGAGTTATTTGTAGTCTAAAATGGCATGATCACATTAAGCCTGAATATGTTGCCTTGTGTTGGAAATATGGAATTGGTTAAGCTGCAAAATAACTTTATAGCTAGATAGAAACCGAAGACCTGGTTTGAGCCAGCTTAAGCGTGTTATCAGGATCTTTGCTAGAAAGGTTGGTTCCAAATGAAATATATATAATCCTAGGTAGTTACATTCAGGATATCTAAAAGAATACTCTATGGAAAACAATGAAATCATGGGAAGTACCGATAGACTGTCTTCACTACTCACCATTATGTAGTTGTGTTATTGATAATGCGGATATCCTTTTTCAGGGTCCTGATCCTGTGTTTAAGGGTGATTAGTGAGGCAATTAATAGGGAAAAAGTGGTCAGTATAAGTTTCGCAGAAAAAAGTACAGTATGGTGAGTACTGCTTGAGGAATAGTGAATTCTGATAGCAAGTAGTTTCTTCTTTTGGCTACTCCCAGGGAGCCCCCAAGTTTCATGACTTGTGGTAGCATTGAGCTTGAATCTGTTGCTCCGATTTGGTAACTTAGGTTTAGTTAACCTTGTTATGACTTTAACCTTGGTATGACCCAAGCGGACCAACTATGAACAATCATTTTTGGGATTGCATCAACTCTCTACTTAGAGCTTCGATTTTTGTATACGAGCTGACTCAATCTGTCTTTTGTAATTTTTGCTTTTGTTTCTGTTTGCTGCTATTAATGAAATCTACTTCAACACGAAAAAGACCAACTTTGAGCAATTTTTAAGGGAGATTAGCTGATTGTGTCCATAGGGTAAAAGAATTTTCATTCCAAAAGAAATGTATATAACCTTATGCAGTTACATTTAGGTATCCGAAAGCAATATTCTGTGGAAAATGATGAAATTAGCTGTAATCATGCGAGGTAGTGAGACACTGTCAACTCCTCATTATGTTGTTCTGTTCTCATAATGTGGGTCACAACAAGTCCTTTTGTCCCCAATTATAGCCCTGTGTTTGAGGGTGACTTATTTGACAATGAAAAGGAAACCATCGGTAATATTAAGTTAATCAGTCCATGAAATGGTTTCTGCTACCAAGGGTACAGTATGGTAAGTTCTTTTAAAGGAACGGTGAATCTGATAGAAAGTAAGGCTAACAAATCTGTAATGAAATGAGAAGTGTACTTGAGCTGATTCTATGATCCTATTTCCTAAAGATTTAAATCTTAGAAGAATAAAATTTTGAAATGAATTTTTGCTTGTCCCCCAAAAATCTTTCCTGCCATATAATCCCTGTGTAATATAACTCATGCATTGAGAGTGGGGCTGTCTTACTCCAACAATTGCTGCCTTCTCCTTTCACTGTGCAAAGGTCCACTGATCTATTAGAACAAATAATGCCCTCGTCCTACTAATTTACTTAATAATAGACTAAGAAACACAGTGAACTCTTATGTCTGGCTGTGTGACAATTTTCCGTATTTCTTAAATATCTACTCTGTTTTGATTGCAATTTGCATGTGATGAGACATGACCTAATTTAGAAATATTCCTCATTAAGTTCATTTAGTGTTTTATGATGAGGTTGGTAACAGAAAACACAAGGAAGCAAAGATGGCATCCCCTAAATATGACTGATTCAGAGATTTAATCTTCTGATGTGCCCAATTAGAAACTGAATATCTAACAATCCACCTTATTTTTCAATGGTGGACTCAACAACAGGCAATTTTATTCCTTTGCTTGTCCCTTTTTTTTTTACTCCATAAGTTAAGATTGTGCTATTGTAGTATACTAATAGGCTGTAGCTTATGGATCCGGCTGGTGAAAAATATTCAGAACAGAAAAAGTAAGGAAATATTTGTGGATTAAGTAAAGGTGACTAGCATACCTCAAGTTATTAGGATTAGTTTTCTGTGGTAGAAAGACATTCTCTTCCTTTTTTCATCTTTTAAGTCTTACCAATCAACATTAGCCAGTGCCGAAGGTATACCAGATAAACTAGTCTCCCATACTTTTCCACTCTATTTCCTCAAATTAATTGCATTGTTGAATATATATGAACTCATTGAATTTTAGATACTAGATTAGCCTTCGAACCTGTTTGGACTTCGGGACCATAGAATCATTGACACTCGCTGCTCGTTATGAGGTTCACTAAAATATAATCAGGTTATTTCTGGTCACATTACACTAAGATTAATCAAACCTAATTTATGGAATTTCATAAACGGTTAATGCTTATGCTCAATTGCAAATATATTTCTAAGAAAGACCAACCAAAGCTAAATGAAAAATTAAAGAGGGCAAGTAAGTTGTAAGATGATTAATGACACGAGGAAAAGCATGTTGTTGTTATTTCCATGGCTGCTTACATTGCTACATATTTTTCAGGAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACTGTATTTCCAGTGTCCGGTCGTGGAACTGTTCCTTCAAAAGATCACATAGCAAGGATTATATCACGAATTCAAGAAGAAATAGAAGCCGTCCAGATGGATGCTCAGTTAACTCTTCTTGTCTTGCGTGAGATCAACAAAGTTCTGCTTCTGCTTTCAGAAAGAACAGAATACCAGGTACCTTTTTTAAATTTGTATGACAGAACGTTCTTGGGAGAAAACACTGTTTATAACTTTAAGAAGCAAAATTGTATATCACGAGCTCACTGCCTAGCTTCATGATTTATGTAATATCTGCAGTTTGGGTATGTTTAACATTTGAAGCAGCTGTTTTACACTTGAATAATACAATTGCTTTTATTTGTTGAGTGGAAATGAGGGAGAGTTGCCAGTTTGTATGTGAAGAATGTAGAGATAGGTCTGCATTTCCAGAAATTTAGAATCCAGTTCATTCATACATCAACCAGAAAGTGCTGCAATCAGGGGAAAGGAACAGGGGTTAATTTATAGGCCTAGGGGTGGAAGTTCCTCTAATTTAGCATGTCGTTATTTAGATTTTGGAGTAAGACCAGTATATTATAGCTAAGCTGAACAAAAAGTATCTAAAAGAGTTTGCTGCATGTTATAGAAAAAGAGAGTTTGCATTGATGCAAGTTCCTACAATTTACTGCAGATCATTTTCCACGAACCTCAAACGGAAGAATCTTTTTCTTTTTGTTTAAGAAACATTTTTTTTATCAAAATGATGCATCCAGTGGATGCAATATTGCAAAGCCAAGTTGACTTCTGCTAAAAACTTTTAAGATCCAACAAAGTCAAAAGATTGAATTACAAAGTCATCTGCTGATTTCCATTCCCATTCCATCGAGACTTTTTGGTTTAATTACCATATTCCATTTTATTAGATGGAATTTGTGGTGGTCACAGCCAAGAGTCTCCTTATCATGTCAGCCTGCTTTACCACTTTGTTAGAAATAGGAAACAAGGACAGGAAGTAATTTCTCAAACTGCCCAGCACACTATTTTTCTTTGTTAGTCTGCCTCCAATTGAGAGGAATAGCTTCTTCCAAGTAGCCAACCTCCTCTCAAACCTTTCTATAAACCCCTGCCAAACATTTTATTGATTTATGTTTCTACAACGTCAAAGAGAAGAATCTTGAACAATTTGTTCTCACCTACTAATGTTTTCATGAACTAACCTAAAAAAAATATCACACTTATCTATACAAAAAAAGAAATGAAGTTTATCCAAGGACCTACTACAATCACCCTAATTTGAATTAGTGCAGAGTACCGTTGTTTGATTTGATCACTTTCTCCTCGATGTACATTGGATGATATTTCGATTCAAAATGAAATGGAAAATAATTATTTATACTTTGCAGACAACTAGTTCATAATTATGGTGTGAACTGTGAAGAGGTAAATAAGTTTGCATAGTTATGTTTTTGAAACTTGAAAGGTATAGCGGAAGTTCTTGAAACAGAAATAGTTATAAGAAGCTGATTGCTAAGCAATGCTATTACACCACCCGAAACAAGGGAAAAAAGATATTGCACAAGCCTAAGATTTGTAAATGCTAACAGTGACCTAGAAACTTTACTTTTTTCTGTTTATATTTCTTCTTTCCATCTTGTTCTTGCTCTTTCTCGTACTATTCTGCATTTCGATAGAACTTGTTTTCTGTGGTCCTTGACAGTATTGAAAGTTAAATAGAGTAAACAGCTAGCAACTTCGAGTAGGTTAATCTTTGTAAGCTATTATTGATACTCTAAGCTTGATGTCTGGAATGAGTAGAACTACTTTGATTACTAGAATTAGAAATGGTTGTTATTCTTATTACTGAATTTTAGTAAGTACTACTACCTCTCGTCATTTTCTTTTCATTTGGGGAAAGGTGGAAGTTTGCTCTCTCTCTCTCTCTCTCTCTCCCTTTTCTTTGGCAACATATCGCAAATGATTTCCCTTGATTGTTTCTGTATTCTCCCAGTAGGAGGTGGATGGTAGGGTCCGGTAATATCAATAATCTTTCCATCAGAGTAATTGAGTTGATTAAAAATTTAGATAAATGAATTTAGTATCTATAGGCACATCTACTCGAATTTCATAGATTTACTTTATCTACAGATATCTGCAGGTCCCGAGGCACGACAGATAACAGGTCCTGCAACTCCAGCACAGGTGAAGAACTTTGCGTTATGCCAGCATCTGCAAGAAATTCATACCCGCATATCGTCTATGGTGGCAGGATTACCAGCTATTGCAACCGATATTTTGTCTCCCGCACTGGGATCTATCTATGGGGTTGCAGGTGATTCAGTGACACCACTATTCCAATC-AATGCTTGATCGACTGGAGTCATGCATCTTGC</genome_strand>
        <mrna_strand>CAAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACTGTATTTCCAGTGTCCGGTCGTGGAACTGTTCCTTCAAAAGATCACATAGCAAGGATTATATCACGAATTCAAGAAGAAATAGAAGCCGTCCAGATGGATGCTCAGTTAACTCTTCTTGTCTTGCGTGAGATCAACAAAGTTCTGCTTCTGCTTTCAGAAAGAACAGAATACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGCAGGTCCCGAGGCACGACAGATAACAGGTCCTGCAACTCCAGCACAGGTGAAGAACTTTGCGTTATGCCAGCATCTGCAAGAAATTCATACCCGCATATCGTCTATGGTGGCAGGATTACCAGCTATTGCAACCGATATTTTGTCTCCCGCACTGGGATCTATCTATGGGGTTGCAGGTGATTCAGTGACACCACTATTCCANNNTCATGC-TGATCGACTGGAGTCATGCATCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E304578" ref_strand="+" ref_description="SGN-E304578 [cLEX-11-L5]">
      <seq>aaaggatgagtggttgtatggaccaattgcattccattgtggttgctgtttggcatttgcagagggttttatcgaagaaaagagacccctttacgcatgtcttgctgcttgatgaggtcatgcatgaaggtgatccgatattgacggatcgtgtttgggaggcactgggtaaatcttttgctaaccaaatgaagtccactttcagcacatcaagttttgttaaggagatattcactcttggatatccaaaactcttctctatgttagaaaacctgcttgaaagaatttcacgtgatacagacgtcaaaggagttccaccagctctcagttcagaagcaaaggaccaaatgttatcttccattgaaatattccagactgctttcctaaccctctgtctgagccgtctttcagaacttgttaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="72936" stop="76410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73236" g_stop="73360" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73361" i_stop="75810" i_length="2450">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75811" g_stop="76110" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="425" r_length="300" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E304578" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73236" e_stop="73360"/>
          <exon e_start="75811" e_stop="76110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAGGTGTGTGAATGCATCTTTAGTTGATATGAATTGTTTCTAAGAAGTTATATATGATGCTTTTCTTATATTGAGTTATTTGTAGTCTAAAATGGCATGATCACATTAAGCCTGAATATGTTGCCTTGTGTTGGAAATATGGAATTGGTTAAGCTGCAAAATAACTTTATAGCTAGATAGAAACCGAAGACCTGGTTTGAGCCAGCTTAAGCGTGTTATCAGGATCTTTGCTAGAAAGGTTGGTTCCAAATGAAATATATATAATCCTAGGTAGTTACATTCAGGATATCTAAAAGAATACTCTATGGAAAACAATGAAATCATGGGAAGTACCGATAGACTGTCTTCACTACTCACCATTATGTAGTTGTGTTATTGATAATGCGGATATCCTTTTTCAGGGTCCTGATCCTGTGTTTAAGGGTGATTAGTGAGGCAATTAATAGGGAAAAAGTGGTCAGTATAAGTTTCGCAGAAAAAAGTACAGTATGGTGAGTACTGCTTGAGGAATAGTGAATTCTGATAGCAAGTAGTTTCTTCTTTTGGCTACTCCCAGGGAGCCCCCAAGTTTCATGACTTGTGGTAGCATTGAGCTTGAATCTGTTGCTCCGATTTGGTAACTTAGGTTTAGTTAACCTTGTTATGACTTTAACCTTGGTATGACCCAAGCGGACCAACTATGAACAATCATTTTTGGGATTGCATCAACTCTCTACTTAGAGCTTCGATTTTTGTATACGAGCTGACTCAATCTGTCTTTTGTAATTTTTGCTTTTGTTTCTGTTTGCTGCTATTAATGAAATCTACTTCAACACGAAAAAGACCAACTTTGAGCAATTTTTAAGGGAGATTAGCTGATTGTGTCCATAGGGTAAAAGAATTTTCATTCCAAAAGAAATGTATATAACCTTATGCAGTTACATTTAGGTATCCGAAAGCAATATTCTGTGGAAAATGATGAAATTAGCTGTAATCATGCGAGGTAGTGAGACACTGTCAACTCCTCATTATGTTGTTCTGTTCTCATAATGTGGGTCACAACAAGTCCTTTTGTCCCCAATTATAGCCCTGTGTTTGAGGGTGACTTATTTGACAATGAAAAGGAAACCATCGGTAATATTAAGTTAATCAGTCCATGAAATGGTTTCTGCTACCAAGGGTACAGTATGGTAAGTTCTTTTAAAGGAACGGTGAATCTGATAGAAAGTAAGGCTAACAAATCTGTAATGAAATGAGAAGTGTACTTGAGCTGATTCTATGATCCTATTTCCTAAAGATTTAAATCTTAGAAGAATAAAATTTTGAAATGAATTTTTGCTTGTCCCCCAAAAATCTTTCCTGCCATATAATCCCTGTGTAATATAACTCATGCATTGAGAGTGGGGCTGTCTTACTCCAACAATTGCTGCCTTCTCCTTTCACTGTGCAAAGGTCCACTGATCTATTAGAACAAATAATGCCCTCGTCCTACTAATTTACTTAATAATAGACTAAGAAACACAGTGAACTCTTATGTCTGGCTGTGTGACAATTTTCCGTATTTCTTAAATATCTACTCTGTTTTGATTGCAATTTGCATGTGATGAGACATGACCTAATTTAGAAATATTCCTCATTAAGTTCATTTAGTGTTTTATGATGAGGTTGGTAACAGAAAACACAAGGAAGCAAAGATGGCATCCCCTAAATATGACTGATTCAGAGATTTAATCTTCTGATGTGCCCAATTAGAAACTGAATATCTAACAATCCACCTTATTTTTCAATGGTGGACTCAACAACAGGCAATTTTATTCCTTTGCTTGTCCCTTTTTTTTTTACTCCATAAGTTAAGATTGTGCTATTGTAGTATACTAATAGGCTGTAGCTTATGGATCCGGCTGGTGAAAAATATTCAGAACAGAAAAAGTAAGGAAATATTTGTGGATTAAGTAAAGGTGACTAGCATACCTCAAGTTATTAGGATTAGTTTTCTGTGGTAGAAAGACATTCTCTTCCTTTTTTCATCTTTTAAGTCTTACCAATCAACATTAGCCAGTGCCGAAGGTATACCAGATAAACTAGTCTCCCATACTTTTCCACTCTATTTCCTCAAATTAATTGCATTGTTGAATATATATGAACTCATTGAATTTTAGATACTAGATTAGCCTTCGAACCTGTTTGGACTTCGGGACCATAGAATCATTGACACTCGCTGCTCGTTATGAGGTTCACTAAAATATAATCAGGTTATTTCTGGTCACATTACACTAAGATTAATCAAACCTAATTTATGGAATTTCATAAACGGTTAATGCTTATGCTCAATTGCAAATATATTTCTAAGAAAGACCAACCAAAGCTAAATGAAAAATTAAAGAGGGCAAGTAAGTTGTAAGATGATTAATGACACGAGGAAAAGCATGTTGTTGTTATTTCCATGGCTGCTTACATTGCTACATATTTTTCAGGAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACT</genome_strand>
        <mrna_strand>AAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543631" ref_strand="+" ref_description="SGN-E543631 [TUS-65-I19](-)">
      <seq>ggatgctgctatggacaataatgcatcacctaatatggaagagttgcagaagagcattctccatttccgtagtgagttcctgtccaggctgttgccttcttcggcaaatagcttgactacaggttcagaaactatttgtactaccctcgtgaggagcatggcgtctagagttttgatatttttcatcaggcatgcttcactcgttagacctctctcagaatcaggcaagttaagattagccagggacatggctgagctggaattggcagttggccaaaacttgtttccagttgaacagctcggtgccccatatcgagcacttagagcatttcgtcctgttatattcctggaaacatctcaacttgcttcatccccacttcgtcaagatctaccaccaagtgtcatactgcaccatctctactcacgcggtcctgaagaacttcaatcacccttgcaaagaaatagacttactccaatgcagtattcactatggatggattcacaaggcgaggaccagatatggaaaggcatcaaagctacactggacgactatgcttctaaggtacgttcaagaggagacaaagaattcagtcctgtctatcctttaatgatagaaattggttcttctttatccgggaatcgttagaggaactttgagaaatatgcacagctccaatcatcttttctttgtatacgccattcgtcacaatttttgtttgaataatgtttttatagattttgaactctcagaagaccatatattatgtttcatttccttagccatgatttaaatatttcacatttgtagtattgccctgatagtgcacagattcaaagagatggattatagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="78213" stop="79664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="79364" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="852" r_length="852" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="853" polyA_stop="870"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543631" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="79364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGCTGCTATGGACAATAATGCATCACCTTATATGGAAGAGTTGCAGAAGAGCATTCTCCATTTCCGTAGTGAGTTCCTGTCCAGGCTGTTGCCTTCTTCGGCAAATAGCTTGACTACAGGTTCAGAAACTATTTGTACTACCCTCGTGAGGAGCATGGCGTCTAGAGTTTTGATATTTTTCATCAGGCATGCTTCACTCGTTAGACCTCTCTCAGAATCAGGCAAGTTAAGATTAGCCAGGGACATGGCTGAGCTGGAATTGGCAGTTGGCCAAAACTTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTCATTTCCTTAGCCATGATTTAAATATTTCACATTTGTAGTATTGCCCTGATAGTGCACAGATTCAAAGAGATGGATTATAGTA</genome_strand>
        <mrna_strand>GGATGCTGCTATGGACAATAATGCATCACCTAATATGGAAGAGTTGCAGAAGAGCATTCTCCATTTCCGTAGTGAGTTCCTGTCCAGGCTGTTGCCTTCTTCGGCAAATAGCTTGACTACAGGTTCAGAAACTATTTGTACTACCCTCGTGAGGAGCATGGCGTCTAGAGTTTTGATATTTTTCATCAGGCATGCTTCACTCGTTAGACCTCTCTCAGAATCAGGCAAGTTAAGATTAGCCAGGGACATGGCTGAGCTGGAATTGGCAGTTGGCCAAAACTTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTCATTTCCTTAGCCATGATTTAAATATTTCACATTTGTAGTATTGCCCTGATAGTGCACAGATTCAAAGAGATGGATTATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349493" ref_strand="+" ref_description="SGN-E349493 [cTOS-1-I5]">
      <seq>ttgtttccagttgaacagctcggtgccccatatcgagcacttagagcatttcgtcctgttatattcctggaaacatctcaacttgcttcatccccacttcgtcaagatctaccaccaagtgtcatactgcaccatctctactcacgcggtcctgaagaacttcaatcacccttgcaaagaaatagacttactccaatgcagtattcactatggatggattcacaaggcgaggaccagatatggaaaggcatcaaagctacactggacgactatgcttctaaggtacgttcaagaggagacaaagaattcagtcctgtctatcctttaatgatagaaattggttcttctttatccgggaatcgttagaggaactttgagaaatatgcacagctccaatcatcttttctttgtatacgccattcgtcacaatttttgtttgaataatgtttttatagattttgaactctcagaagaccatatattatgtttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="78493" stop="79583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78793" g_stop="79282" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="503"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E349493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78793" e_stop="79282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTC</genome_strand>
        <mrna_strand>TTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E352804" ref_strand="+" ref_description="SGN-E352804 [cTOS-11-G19]">
      <seq>ttgtttccagttgaacagctcggtgccccatatcgagcacttagagcatttcgtcctgttatattcctggaaacatctcaacttgcttcatccccacttcgtcaagatctaccaccaagtgtcatactgcaccatctctactcacgcggtcctgaagaacttcaatcacccttgcaaagaaatagacttactccaatgcagtattcactatggatggattcacaaggcgaggaccagatatggaaaggcatcaaagctacactggacgactatgcttctaaggtacgttcaagaggagacaaagaattcagtcctgtctatcctttaatgatagaaattggttcttctttatccgggaatcgttagaggaactttgagaaatatgcacagctccaatcatcttttctttgtatacgccattcgtcacaatttttgtttgaataatgtttttatagattttgaactctcagaagaccatatattatgtttcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="78493" stop="79583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78793" g_stop="79282" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="490" r_length="490" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="503"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E352804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78793" e_stop="79282"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTC</genome_strand>
        <mrna_strand>TTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687980" ref_strand="+" ref_description="SGN-E687980 [T3_tus_81_O14]">
      <seq>gagatcgacagacaagaaaacaggactgaagaaaatgcactagctccaaaatggttgatacctttcaagtacaagttagtcgagaccttaaatgacgaaagagatggatctattttcggtgcaatcttagaatgggatagatctgcagcattgtctgatttcatgctcatcagaccgagtggtgcaccaagagctgtcgtagccttaagaggaacgcttctcaaaagccaaacaatgagaagggatatcgaagatgatctccgtttcttagcttgggaaagtctgaaaggttctgttagattcaatgcagccctcaatgcgctaaaatcaattgccaccaaatatggcagcaacaatgtgtgtatcgtaggccactcactcggagctggatttgctctccaagtaggaaaagcgttagcaaaagaaggcatacatgtagaagcacatttgttcaatccaccctcagtttcacttgctatgagcttaagaaacataggcgaaaaagctggtgtcgcatggaaaaggctcaaatcaatgctcccttcgaatcaagatacccaaactagcaacgagggaaatgatactcaatcatttcggataggcctaaaaccatgggtgccacatttgtacatcaacaatagcgattacatatgttgctcttacactgatcaagaaaagaatggactacgagataaccacgatgagtgtgataaagagaatgcaacaccaagaaatggacaacaagttgttgctgctgcaaagctttttctgtcatctaacaaagggaaacaaaagtttcttgaggcacatggattggagcaatggtggtctgataatttggaactacaaatggctattagtaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="83789" stop="82325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83489" g_stop="82625" g_length="865"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="865" r_length="865" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E687980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83489" e_stop="82625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCGACAGACAAGAAAACAGGACTGAAGAAAATGCACTAGCTCCAAAATGGTTGATACCTTTCAAGTACAAGTTAGTCGAGACCTTAAATGACGAAAGAGATGGATCTATTTTCGGTGCAATCTTAGAATGGGATAGATCTGCAGCATTGTCTGATTTCATGCTCATCAGACCGAGTGGTGCACCAAGAGCTGTCGTAGCCTTAAGAGGAACGCTTCTCAAAAGCCAAACAATGAGAAGGGATATCGAAGATGATCTCCGTTTCTTAGCTTGGGAAAGTCTGAAAGGTTCTGTTAGATTCAATGCAGCCCTCAATGCGCTAAAATCAATTGCCACCAAATATGGCAGCAACAATGTGTGTATCGTAGGCCACTCACTCGGAGCTGGATTTGCTCTCCAAGTAGGAAAAGCGTTAGCAAAAGAAGGCATACATGTAGAAGCACATTTGTTCAATCCACCCTCAGTTTCACTTGCTATGAGCTTAAGAAACATAGGCGAAAAAGCTGGTGTCGCATGGAAAAGGCTCAAATCAATGCTCCCTTCGAATCAAGATACCCAAACTAGCAACGAGGGAAATGATACTCAATCATTTCGGATAGGCCTAAAACCATGGGTGCCACATTTGTACATCAACAATAGCGATTACATATGTTGCTCTTACACTGATCAAGAAAAGAATGGACTACGAGATAACCACGATGAGTGTGATAAAGAGAATGCAACACCAAGAAATGGACAACAAGTTGTTGCTGCTGCAAAGCTTTTTCTGTCATCTAACAAAGGGAAACAAAAGTTTCTTGAGGCACATGGATTGGAGCAATGGTGGTCTGATAATTTGGAACTACAAATGGCTATTAGTAACA</genome_strand>
        <mrna_strand>GAGATCGACAGACAAGAAAACAGGACTGAAGAAAATGCACTAGCTCCAAAATGGTTGATACCTTTCAAGTACAAGTTAGTCGAGACCTTAAATGACGAAAGAGATGGATCTATTTTCGGTGCAATCTTAGAATGGGATAGATCTGCAGCATTGTCTGATTTCATGCTCATCAGACCGAGTGGTGCACCAAGAGCTGTCGTAGCCTTAAGAGGAACGCTTCTCAAAAGCCAAACAATGAGAAGGGATATCGAAGATGATCTCCGTTTCTTAGCTTGGGAAAGTCTGAAAGGTTCTGTTAGATTCAATGCAGCCCTCAATGCGCTAAAATCAATTGCCACCAAATATGGCAGCAACAATGTGTGTATCGTAGGCCACTCACTCGGAGCTGGATTTGCTCTCCAAGTAGGAAAAGCGTTAGCAAAAGAAGGCATACATGTAGAAGCACATTTGTTCAATCCACCCTCAGTTTCACTTGCTATGAGCTTAAGAAACATAGGCGAAAAAGCTGGTGTCGCATGGAAAAGGCTCAAATCAATGCTCCCTTCGAATCAAGATACCCAAACTAGCAACGAGGGAAATGATACTCAATCATTTCGGATAGGCCTAAAACCATGGGTGCCACATTTGTACATCAACAATAGCGATTACATATGTTGCTCTTACACTGATCAAGAAAAGAATGGACTACGAGATAACCACGATGAGTGTGATAAAGAGAATGCAACACCAAGAAATGGACAACAAGTTGTTGCTGCTGCAAAGCTTTTTCTGTCATCTAACAAAGGGAAACAAAAGTTTCTTGAGGCACATGGATTGGAGCAATGGTGGTCTGATAATTTGGAACTACAAATGGCTATTAGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328532" ref_strand="+" ref_description="SGN-E328532 [cTOC-23-G4]">
      <seq>agatcgacagacaagaaaacaggactgaagaaaatgcactagctccaaaatggttgatacctttcaagtacaagttagtcgagaccttaaatgacgaaagagatggatctattttcggtgcaatcttagaatgggatagatctgcagcattgtctgatttcatgctcatcagaccgagtggtgcaccaagagctgtcgtagccttaagaggaacgcttctcaaaagccaaacaatgagaagggatatcgaagatgatctccgtttcttagcttgggaaagtctgaaaggttctgttagattcaatgcagccctcaatgcgctaaaatcaattgccaccaaatatggcagcaacaatgtgtgtatcgtaggccactcactcggagctggatttgctctccaagtaggaaaagcgttagcaaaagaaggcatacatgtagaagcacatttgttcaatccaccctcagtttcacttgctatgagcttaagaaacatagggcgaaaagctggtgtcgcatggaaaaggctcaaatcaatgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="83788" stop="82648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83488" g_stop="82948" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E328532" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83488" e_stop="82948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCGACAGACAAGAAAACAGGACTGAAGAAAATGCACTAGCTCCAAAATGGTTGATACCTTTCAAGTACAAGTTAGTCGAGACCTTAAATGACGAAAGAGATGGATCTATTTTCGGTGCAATCTTAGAATGGGATAGATCTGCAGCATTGTCTGATTTCATGCTCATCAGACCGAGTGGTGCACCAAGAGCTGTCGTAGCCTTAAGAGGAACGCTTCTCAAAAGCCAAACAATGAGAAGGGATATCGAAGATGATCTCCGTTTCTTAGCTTGGGAAAGTCTGAAAGGTTCTGTTAGATTCAATGCAGCCCTCAATGCGCTAAAATCAATTGCCACCAAATATGGCAGCAACAATGTGTGTATCGTAGGCCACTCACTCGGAGCTGGATTTGCTCTCCAAGTAGGAAAAGCGTTAGCAAAAGAAGGCATACATGTAGAAGCACATTTGTTCAATCCACCCTCAGTTTCACTTGCTATGAGCTTAAGAAACATAGGCGAAAAAGCTGGTGTCGCATGGAAAAGGCTCAAATCAATGCTCCC</genome_strand>
        <mrna_strand>AGATCGACAGACAAGAAAACAGGACTGAAGAAAATGCACTAGCTCCAAAATGGTTGATACCTTTCAAGTACAAGTTAGTCGAGACCTTAAATGACGAAAGAGATGGATCTATTTTCGGTGCAATCTTAGAATGGGATAGATCTGCAGCATTGTCTGATTTCATGCTCATCAGACCGAGTGGTGCACCAAGAGCTGTCGTAGCCTTAAGAGGAACGCTTCTCAAAAGCCAAACAATGAGAAGGGATATCGAAGATGATCTCCGTTTCTTAGCTTGGGAAAGTCTGAAAGGTTCTGTTAGATTCAATGCAGCCCTCAATGCGCTAAAATCAATTGCCACCAAATATGGCAGCAACAATGTGTGTATCGTAGGCCACTCACTCGGAGCTGGATTTGCTCTCCAAGTAGGAAAAGCGTTAGCAAAAGAAGGCATACATGTAGAAGCACATTTGTTCAATCCACCCTCAGTTTCACTTGCTATGAGCTTAAGAAACATAGGGCGAAAAGCTGGTGTCGCATGGAAAAGGCTCAAATCAATGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E218149" ref_strand="+" ref_description="SGN-E218149 [cLEL-23-H7](-)">
      <seq>agtgggttgtttgtagatgtcgaaaaggggagtaaaagagatgaggaatgaaatggtggcagctgaaggagagataaaaatggagaattttgaaaagggtgctgttgaatctcatcccttatgcatttcatgtttctggaccaagaaatgttgcttctccaaattggagagatcttattaattcaagttggttagtgttcttttcttgatttgctgttaaaagtttcaagcttttattagtcttgtagctgatgatgtagagtgtgcttgtttttcagtgtttgtgaattttgagttgtggatttaagaccctttttcttgatttcagatttcgatttgttaaggtttaactgatatctagctaaagctaattctagtttgttagtgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="86389" stop="85397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86089" g_stop="85700" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="407"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E218149" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86089" e_stop="85700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGGTTGTTTGTAGATGTCGAAAAGGGGAGTAGAAGAGATGAGGAATGAAATGGTGGCAGCTGAAGGAGAGATAAAAATGGAGAATTTTGAAAAGGGTGCTGTTGAATCTCAT-CCTTATGCATTTCATGTTTCTGGACCAAGAAATGTTGCTTCTCCAAATTGGAGAGATCTTATTAATTCAAGTTGGTTAGTGTTCTTTTCTTGATTTGCTGTTAAAAGTTTCAAGCTTTTATTAGTCTTGTAGCTGATGATGTAGAGTGTGCTTGTTTTTCAGTGTTTGTGAATTTTGAGTTGTGGATTTAAGACCCTTTTTCTTGATTTCAGATTTCGATTTGTTAAGGTTTAACTGATATCTAGCTAAAGCTAATTCTAGTTTGTTAGTGTTCT</genome_strand>
        <mrna_strand>AGTGGGTTGTTTGTAGATGTCGAAAAGGGGAGTAAAAGAGATGAGGAATGAAATGGTGGCAGCTGAAGGAGAGATAAAAATGGAGAATTTTGAAAAGGGTGCTGTTGAATCTCATCCCTTATGCATTTCATGTTTCTGGACCAAGAAATGTTGCTTCTCCAAATTGGAGAGATCTTATTAATTCAAGTTGGTTAGTGTTCTTTTCTTGATTTGCTGTTAAAAGTTTCAAGCTTTTATTAGTCTTGTAGCTGATGATGTAGAGTGTGCTTGTTTTTCAGTGTTTGTGAATTTTGAGTTGTGGATTTAAGACCCTTTTTCTTGATTTCAGATTTCGATTTGTTAAGGTTTAACTGATATCTAGCTAAAGCTAATTCTAGTTTGTTAGTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217929" ref_strand="+" ref_description="SGN-E217929 [cLEL-23-H7](-)">
      <seq>tgggttgtttgtagatgtcgaaaaggggagtagaagagatgaggaatgaaatggtggcagctgaaggagagataaaaatggagaattttgaaaagggtgctgttgaatctcatccttatgcatttcatgtttctggaccaagaaatgttgcttctccaaattggagagatcttattaattcaagttggttagtgttcttttcttgatttgctgttaaaagtttcaagcttttattagtcttgtagctgatgatgtagagtgtgcttgtttttcagtgtttgtgaattttgagttgtggatttaagaccctttttcttgatttcagatttcgatttgttaaggtttaactgatatctagctaaagctaattctagtttgttagtgttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="86387" stop="85397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86087" g_stop="85700" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="389" polyA_stop="404"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E217929" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86087" e_stop="85700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGTTGTTTGTAGATGTCGAAAAGGGGAGTAGAAGAGATGAGGAATGAAATGGTGGCAGCTGAAGGAGAGATAAAAATGGAGAATTTTGAAAAGGGTGCTGTTGAATCTCATCCTTATGCATTTCATGTTTCTGGACCAAGAAATGTTGCTTCTCCAAATTGGAGAGATCTTATTAATTCAAGTTGGTTAGTGTTCTTTTCTTGATTTGCTGTTAAAAGTTTCAAGCTTTTATTAGTCTTGTAGCTGATGATGTAGAGTGTGCTTGTTTTTCAGTGTTTGTGAATTTTGAGTTGTGGATTTAAGACCCTTTTTCTTGATTTCAGATTTCGATTTGTTAAGGTTTAACTGATATCTAGCTAAAGCTAATTCTAGTTTGTTAGTGTTCT</genome_strand>
        <mrna_strand>TGGGTTGTTTGTAGATGTCGAAAAGGGGAGTAGAAGAGATGAGGAATGAAATGGTGGCAGCTGAAGGAGAGATAAAAATGGAGAATTTTGAAAAGGGTGCTGTTGAATCTCATCCTTATGCATTTCATGTTTCTGGACCAAGAAATGTTGCTTCTCCAAATTGGAGAGATCTTATTAATTCAAGTTGGTTAGTGTTCTTTTCTTGATTTGCTGTTAAAAGTTTCAAGCTTTTATTAGTCTTGTAGCTGATGATGTAGAGTGTGCTTGTTTTTCAGTGTTTGTGAATTTTGAGTTGTGGATTTAAGACCCTTTTTCTTGATTTCAGATTTCGATTTGTTAAGGTTTAACTGATATCTAGCTAAAGCTAATTCTAGTTTGTTAGTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543470" ref_strand="+" ref_description="SGN-E543470 [TUS-65-E21]">
      <seq>ccagctcacctgcaaattttttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcagaatgttgaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaagatggagtgtttgatgtatcgaatgagtcttatggtataaaagttggatatggaggcattccaggaccatcaggtggaagagatggagctgcttctcaaggagggggttgttgtacttgaaancttgaaatcattcttcaaacttgatcatggtctcatcatctctatgccagccatcatcacgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87676" stop="92940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87976" g_stop="88097" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="262" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="345" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91260" i_length="665">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.250" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91261" g_stop="91438" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="523" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="592" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92482" g_stop="92639" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="750" r_length="158" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543470" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87976" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91261" e_stop="91438"/>
          <exon e_start="91555" e_stop="91623"/>
          <exon e_start="92482" e_stop="92639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCTCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAGGTATGCCACACCTTGATCGCTGATTTTGAGTATGCTCGATATGTTTTTTGATGGTCATGATTAGTTGATGTCATTATCTGTCTGAGATGAAGTACTTTTGCAATTGGCTATTTATGCCCAGAAAAAGACATCTCTTTTAGAGTAATATGGAAATAGTAGAGAAAAACAGTGATTCACATCCAATTTAGTCTACACATCATATTTGGTTCATTCTGGTCCTATTACCAATTGCTATTATTACAACCAGGAAATCCTGAAGGGCCAGATGGCGCATGGGTCAGAGCTTGGTGGATAATGAGCCTCACACTCTACCCTTTTCCACTTAAGTACCAAATCTTGTTGTTAACAAATATAGTATCTCATTAGTTTAAAGAACATATTGGAAAGTCTGGAGGATTTTTCCTTCAAAAAAATCTAATTGGGTAACTTGCCGACATTTCACATGAAACAAGGTGAACCGTCTGGGGACACTTTCATCCATTGCATGGTGGGTCCGGTTTAAGGGCACGTATGTCCTGGCTATATACAGCTAATTGCTGCTGTTACAGCTTCTACAATCCCAGTTATATATAAAAATTGTGAAATATAAAAAAGAAATATGCAGCCCCTGATGATTTCAAATTACTTATATCATTATTAGTTTACACAATAATGCGAGCACTGTTTCATTCATCCAACTTTTGATCCCCTACAAGTAATTTAGATGGGAGTGATGGTAAATTGGTGATTGATAGAAAACCAGATTGTAGCACATACCACTAAGAAGAGGTTGCCTGCTTTCTTAATGCTTTTGTGCCAATGAGAGTATTTATTTTCGTTGTGTATAATTCTCCCGTCTACTTGGATATTTTTCTGCAGTCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGG</genome_strand>
        <mrna_strand>CCAGCTCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAANCTTGAAATCATTCTTCAAACTTGATCATGGTCTCATCATCTCTATGCCAGCCATCATCACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E305014" ref_strand="+" ref_description="SGN-E305014 [cLEX-10-A10]">
      <seq>cagctcacctgcaaattttttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87677" stop="91701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87977" g_stop="88097" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="261" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="344" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91260" i_length="665">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.250" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91261" g_stop="91401" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="485" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E305014" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87977" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91261" e_stop="91401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCAT</genome_strand>
        <mrna_strand>CAGCTCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284287" ref_strand="+" ref_description="SGN-E284287 [cLER-16-N21]">
      <seq>tcacctgcaaattttttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacttttaatcaccttgctagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87681" stop="91658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87981" g_stop="88097" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="257" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="340" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91234" g_stop="91358" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="465" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E284287" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87981" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAG</genome_strand>
        <mrna_strand>TCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E311487" ref_strand="+" ref_description="SGN-E311487 [cLEZ-18-J12]">
      <seq>acctgcaaattttttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacttttaatcaccttgctagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcanaatgttgaagaggctttcatcaaaacagcctcaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87683" stop="91881"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87983" g_stop="88097" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="255" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="338" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91234" g_stop="91438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="543" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91581" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="570" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E311487" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87983" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91438"/>
          <exon e_start="91555" e_stop="91581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATC</genome_strand>
        <mrna_strand>ACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCANAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203334" ref_strand="+" ref_description="SGN-E203334 [cLEB-3-L3]">
      <seq>gcacgagtttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacttttaatcaccttgctagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcagaatgttgaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaagatggagtgtttgatgtatcgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87695" stop="91921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87987" g_stop="88097" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="250" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="333" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91234" g_stop="91438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="538" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91621" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="605" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E203334" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203334" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87987" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91438"/>
          <exon e_start="91555" e_stop="91621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATG</genome_strand>
        <mrna_strand>GCACGAGTT-TCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713090" ref_strand="+" ref_description="SGN-E713090 [FB06CG08]">
      <seq>tttttcaactgtctctctatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagtccatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacttttaatcaccttgctagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcagaatgttgaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaagatggagtgtttgatgtatcgaatgagtcttatggtataaaagttggatatggaggcattccaggaccatcaggtggaagagatggagctgcttctcaaggagggggttgttgtacttgaaacttgaaaatcattcttcaaacttgatcatgttctcatcatctctatgccagccatcatcacgggtctttcattcttatcttatttgttttaatgatgttacctgtgcaaaaataagcaaaattcagtaaatagtggacagtccatctttatgtgcgcccgtgtataatagttggcatttcaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87693" stop="93061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87993" g_stop="88097" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="245" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="328" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91234" g_stop="91438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="533" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="602" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92482" g_stop="92761" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="882" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E713090" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>882</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87993" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91438"/>
          <exon e_start="91555" e_stop="91623"/>
          <exon e_start="92482" e_stop="92761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAGGTATGCCACACCTTGATCGCTGATTTTGAGTATGCTCGATATGTTTTTTGATGGTCATGATTAGTTGATGTCATTATCTGTCTGAGATGAAGTACTTTTGCAATTGGCTATTTATGCCCAGAAAAAGACATCTCTTTTAGAGTAATATGGAAATAGTAGAGAAAAACAGTGATTCACATCCAATTTAGTCTACACATCATATTTGGTTCATTCTGGTCCTATTACCAATTGCTATTATTACAACCAGGAAATCCTGAAGGGCCAGATGGCGCATGGGTCAGAGCTTGGTGGATAATGAGCCTCACACTCTACCCTTTTCCACTTAAGTACCAAATCTTGTTGTTAACAAATATAGTATCTCATTAGTTTAAAGAACATATTGGAAAGTCTGGAGGATTTTTCCTTCAAAAAAATCTAATTGGGTAACTTGCCGACATTTCACATGAAACAAGGTGAACCGTCTGGGGACACTTTCATCCATTGCATGGTGGGTCCGGTTTAAGGGCACGTATGTCCTGGCTATATACAGCTAATTGCTGCTGTTACAGCTTCTACAATCCCAGTTATATATAAAAATTGTGAAATATAAAAAAGAAATATGCAGCCCCTGATGATTTCAAATTACTTATATCATTATTAGTTTACACAATAATGCGAGCACTGTTTCATTCATCCAACTTTTGATCCCCTACAAGTAATTTAGATGGGAGTGATGGTAAATTGGTGATTGATAGAAAACCAGATTGTAGCACATACCACTAAGAAGAGGTTGCCTGCTTTCTTAATGCTTTTGTGCCAATGAGAGTATTTATTTTCGTTGTGTATAATTCTCCCGTCTACTTGGATATTTTTCTGCAGTCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAAT</genome_strand>
        <mrna_strand>TTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTCCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E359058" ref_strand="+" ref_description="SGN-E359058 [cLHT-11-B15]">
      <seq>tatattcagatctccgttgatccaccgccgtatcggtaaatcatgtcgtacgcatatctcttcaagtatattatcatcggcgatactggagttggaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagtccatgacctgaccataggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaagctacagatctgggacacggctggtcaagaatcattcagatccattacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaaggagggaaacatttaatcaccttgctagttggttggaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatatttatggaggcctcagctaaaacagctcagaatgtggaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaggatggagtgtttgatgtatcgaatgagtcctatggaataaaagttggatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87710" stop="91923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88010" g_stop="88097" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.837" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="228" r_length="140" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="311" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91234" g_stop="91438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="516" r_length="205" r_score="0.980"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="585" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E359058" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88010" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91438"/>
          <exon e_start="91555" e_stop="91623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG</genome_strand>
        <mrna_strand>TATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTCCATGACCTGACCATAGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAGCTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATTACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACATTTAATCACCTTGCTAGTTGGTTGGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTTATGGAGGCCTCAGCTAAAACAGCTCAGAATGTGGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAGGATGGAGTGTTTGATGTATCGAATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E543469" ref_strand="+" ref_description="SGN-E543469 [TUS-65-E21](-)">
      <seq>tcaagtatattatcatcggcgatactggagttgaaaagtcatgtctacttttgcaatttacggacaaacggtttcaaccagttcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaacaaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgtttatgatattacaagttggttagaagatgcaagacagcatgcaaatgcaaacatgaccataatgctgattgggaacaagtgtgatctggctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcagaatgttgaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaagatggagtgtttgatgtatcgaatgagtcttatggtataaaagttggatatggaggcattccaggaccatcaggtggaagagatggagctgcttctcaaggagggggttgttgtacttgaaacttgaaaatcattcttcaaacttgatcatgttctcatcatctctatgccagccatcatcacgggtctttcattcttatcttatttgttttaatgatgttacctgtgcaaaaataagcaaaattcagtaaatagtggacagtccatctttatgtgcgcccgtgtataatagttggcatttcaaaatgtgaatagaattccttatatcttgtgtgcttgtgtgaatgagaaatatgaactaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="87771" stop="93118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88071" g_stop="88097" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.837" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90144" g_stop="90283" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="167" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="250" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90596" i_stop="91260" i_length="665">
            <donor d_prob="0.698" d_score="1.00"/>
            <acceptor a_prob="0.250" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91261" g_stop="91438" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="428" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91555" g_stop="91623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="497" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92482" g_stop="92816" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="831" r_length="334" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="832" polyA_stop="841"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E543469" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88071" e_stop="88097"/>
          <exon e_start="90144" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91261" e_stop="91438"/>
          <exon e_start="91555" e_stop="91623"/>
          <exon e_start="92482" e_stop="92816"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTATATTATCATCGGCGATACTGGTAATTTTGTTTTTTTTTTTGCTTAGTCACGAGTTTGAAGTTTTTTTTTTTATATATAATTTTACATGATTTTGAATCTGATTAATAAGTTTTTGCTGTAAATTTGTTTATCGGCGATGATAATTTGATTGATTTTCAGCTTTTTTTTCTGCATTTTGTTTAATAGGTTGGGTAAATTTAGTGTTTTTGAACTTGTGAGTACTGATTATGGATCTGGAAAAAAATAATTCTTTTTGAGGTTCTATTGTAGTGATTCTTACTGAAATATATGTCAATTGAGTATATGCTGATATCTAAGCTAGCGGTTAGCAGAGATTTTGAGGATAGTTTTTGAAAATTTATAGACAAATATCTGTTTGGCTATGAATTTTATGAGTGTTCGGAAATTTGATGTTCAAATATATGTTTGACAGTGAAATTTGATCAGATTATGATAATCTGAGCTTCAAATATTTTCTAGTGTTTTTGGGACTTCCATCCACAAAGTAAAATGCATGTCCAAACACAACTTCAAATTCAAAATATTACAACTTCAAAAACTCAATTTTTCATGTTTCAACTTCAAAATATATGGCCAAACAGGAGCTAAGTACTTATTGCAAGCGTAGCGATTCTTCTGAAAGATATGGAATTGAGTATATGCTGCTATCTAAGAACTAGCATTTTAATAGGCTTCTAATATTTTTATCTAGATTTCATAAATTTAGTAGAAATAAAATCGATTTTGCGTGATTTTGAATCTGATTTATAGTTTTAATTTTTATTACTTGGCAATGCAAAATAGATTGGTTTTCATTTTTCCTCCATTTTGCATCTAATCAGTAGGTTCTCTTGATAATTTGGTTTTGTGTATTTGGTAAGCTAGAGTTTCGGTATGTTAGCCTGATTTTTATCTATATTGACTGTTTACTTGTCATTGAGGTCTATTTAGTTTGTAGCTGTTGTAGAAAGCCTTTAGAATAGGGCAAGAAATAGCATCTACAAAGTTGTCAATCTGCAGTGGCGCAGTTTAATTTTACGGTTTCCAGTGTTAAAATAGCAGTGTTATCAAAAATGAAAAGTTCTAAGGCCCGTTCAGACTTTTAAGCGCAAAGAAAAAATAAACCTTTGGCTTCAATGAAAAAAGTGCAAATGGAGAGAAAATACAAATATATATATGTTTAGTCCAAGATCCATGTTACCAAAAACAAAAAGCGCAAAAAAGCTCTAGGTCCGTTGGGGCATTAAGCCAGGTGTAGCACTAACATATTTTGAGTCTTGCTTCATGGCTTAAGCACGCCTTTGACAACACTGTCCAAGACTAGTAATTATTAGCATGAACAACAAATATATGGACAAAGAAATTTAAAAAAGAATAACAATAATGTAAAATATTAATTTGTTTAGTATTGCCTCTTTAAGAAACACTCATTGGGAAGAAAAAGTATGTCTTAGAGCCTTGATGACAGCACTCAAGCACACATCAAGCAAGGGGAAGTACTCAACATGTTTCGAGTCTTGTTCCCGGGCTTAAGGGCGCCTTTGACAACACTGTAAAATAGTGAGCAGTTTTAGAAATTACCTTCACAGCTTCTTTGGACTCGTGAGAACTGGAAAATGCTTTCAAAAAGCATGAAAGACATTAGCTTGTGGAAGTTACAATACTCACTCTTTGAATTATCATGTTCATAATTTCAATGTTTTAAGACGTGAAATATACATGAATTTGTACCTTTATCATGAAATCAATTGCTCAAGAGCATCACCACCCATTATGACAAAGTTCCATGCCAATACATATTCTCTTAGAGACACTCAAACTCAATGTGATTCTAAACTCTTTACTGTTTATCTGATTGTTATTTTAATATGATTCTGTATGTTTTATTGCTATTTCAGGACTCACATAATGCCTCTTTTAGATTTACTATGCCATGAAAGAGTGCAACCCTATCATCCCTGTTTGAAATTACGATGCATTAGATTGTACTGTGTGATGTCCATGCATATGTTACTTAAAGTCTTGTGCGAGACTTCACTTATAAAGATATAATATTCTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAGGTATGCCACACCTTGATCGCTGATTTTGAGTATGCTCGATATGTTTTTTGATGGTCATGATTAGTTGATGTCATTATCTGTCTGAGATGAAGTACTTTTGCAATTGGCTATTTATGCCCAGAAAAAGACATCTCTTTTAGAGTAATATGGAAATAGTAGAGAAAAACAGTGATTCACATCCAATTTAGTCTACACATCATATTTGGTTCATTCTGGTCCTATTACCAATTGCTATTATTACAACCAGGAAATCCTGAAGGGCCAGATGGCGCATGGGTCAGAGCTTGGTGGATAATGAGCCTCACACTCTACCCTTTTCCACTTAAGTACCAAATCTTGTTGTTAACAAATATAGTATCTCATTAGTTTAAAGAACATATTGGAAAGTCTGGAGGATTTTTCCTTCAAAAAAATCTAATTGGGTAACTTGCCGACATTTCACATGAAACAAGGTGAACCGTCTGGGGACACTTTCATCCATTGCATGGTGGGTCCGGTTTAAGGGCACGTATGTCCTGGCTATATACAGCTAATTGCTGCTGTTACAGCTTCTACAATCCCAGTTATATATAAAAATTGTGAAATATAAAAAAGAAATATGCAGCCCCTGATGATTTCAAATTACTTATATCATTATTAGTTTACACAATAATGCGAGCACTGTTTCATTCATCCAACTTTTGATCCCCTACAAGTAATTTAGATGGGAGTGATGGTAAATTGGTGATTGATAGAAAACCAGATTGTAGCACATACCACTAAGAAGAGGTTGCCTGCTTTCTTAATGCTTTTGTGCCAATGAGAGTATTTATTTTCGTTGTGTATAATTCTCCCGTCTACTTGGATATTTTTCTGCAGTCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTTATATCTTGTGTGCTTGTGTGAATGAGAAATATTGAACTA</genome_strand>
        <mrna_strand>TCAAGTATATTATCATCGGCGATACTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGAAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTTATATCTTGTGTGCTTGTGTGAATGAGAAATA-TGAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249370" ref_strand="+" ref_description="SGN-E249370 [cLEF-50-M20]">
      <seq>ggcgatactggagttggaaagtcatgtctacttttgcaatttagggacaaacggtttcaaccaggtcatgacctgaccatcggggttgaatttggggctcgaatgatcacaatcgacaaccaaccaattaaactacagatctgggacacggctggtcaagaatcattcagatccatcacaaggtcatattacagaggggctgcgggcgcattacttgttcatgatattacaaggagggaaactgttaatcaccttgctagttggttagaagatgcaagacagcatgcaaatgcagacatgaccataatgctgattgggaacaagtgtgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="89836" stop="91632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90134" g_stop="90283" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90513" g_stop="90595" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="233" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638">
            <donor d_prob="0.698" d_score="0.98"/>
            <acceptor a_prob="0.854" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91234" g_stop="91332" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="332" r_length="99" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E249370" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90134" e_stop="90283"/>
          <exon e_start="90513" e_stop="90595"/>
          <exon e_start="91234" e_stop="91332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACGGTTAGTGAGAAAAACTCTCTTCTTCTGTTTTCTCTTAGTATGTTATGTAGAATTTCGGGATAAATGCCTATAGAAGTCCATAGTTCAGTTTATCATCTTTTTTTTAAAAAAAAAAACAAATCATTTGGAGCTTAACCTAAATGAGACCAAGTCCTCCTCCTAGTTTTCATCTCTAAATGTGCTATCACTAAAGTCTAAAGGCATGTTCTTATAAATGTTCTCGTTTCAGGCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAGGTAGCACACATCTTTGTCACTTTGGATAAGGGAATTTGACACTTTCATAATGCATGTAACTCTAGGAGCCTAGGAGGTGTACTTCTTTATGTGTAATTTAACTTTGGTTAGAAATTCCAGTAGAGTAACTTGCTGCCCTGAAGATCTCATTTAAAGTGGCTGCAACTCAAATATATTGTAGTCTTTTAGTTAAACTAATTAAGGAACATCACATTTTAGTCTATCATAGCAAGGACATATGTGATGGTGTTATGATCATGATAGCTAATATATTCTGGACTAAGGGGAGGAATAAAAAATTTGGTCAAGATAATAAGAAGTGCAAAAGATAATGGATGAGCATTAAACTTCCAGAGCAGCAGCTCTGCCAGTTAGTGAGCTAGAGTCATATAGTTTTCAAGCCTTATTTGTTCCTGAAATCTGTAATGCACTTAATACTCTTCATGGTCCAATTGAAACTTTATGTGGGGGTAAAGTTAAGCATCTGTTTTATGAATCTACTTCCATTAGAGAATGCAAACGAGGGGAAAATATGTTACAATATAAAATCAGGATAGCCTGATTTGCGTGTCTATTATCTCTGCTTGCATTATTTTAGTTGGTCACAAGATTTTGAATGTTTTCTCCAAATTAAATAGGAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCT</genome_strand>
        <mrna_strand>GGCGATACTGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTAGGGACAAACGGTTTCAACCAGGTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACCAACCAATTAAACTACAGATCTGGGACACG.....................................................................................................................................................................................................................................GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTCATGATATTACAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGAAACTGTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAGACATGACCATAATGCTGATTGGGAACAAGTGTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E203335" ref_strand="+" ref_description="SGN-E203335 [cLEB-3-L3](-)">
      <seq>ctcatagaagggctgtaagcacagaagaaggtgagcagtttgccaaagaaaacggattgatattcatggaggcctcagctaaaacagctcagaatgttgaagaggctttcatcaaaacagcctcaacaatctataagaaaatacaagatggagtgtttgatgtatcgaatgagtcttatggtataaaagttggatatggaggcattccaggaccatcaggtggaagagatggagctgcttctcaaggagggggttgttgtacttgaaacttgaaaatcattcttcaaacttgatcatgttctcatcatctctatgccagccatcatcacgggtctttcattcttatcttatttgttttaatgatgttacctgtgcaaaaataagcaaaattcagtaaatagtggacagtccatctttatgtgcgcccgtgtataatagttggcatttcaaaatgtgaatagaattccttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="91035" stop="93080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91335" g_stop="91438" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91555" g_stop="91623" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="173" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92482" g_stop="92777" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="469" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="500"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E203335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91335" e_stop="91438"/>
          <exon e_start="91555" e_stop="91623"/>
          <exon e_start="92482" e_stop="92777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAGGTAAGGAATTTTCTGATCTGACAGGTCTTTTGAGGTTTTGAGTCCTACCATGGAAGTTCTATCTCAAATTTAAATTTTTGTTCTTGACTGGATGATCTCTTTTCTGCATTATTCAGGCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAGGTATGCCACACCTTGATCGCTGATTTTGAGTATGCTCGATATGTTTTTTGATGGTCATGATTAGTTGATGTCATTATCTGTCTGAGATGAAGTACTTTTGCAATTGGCTATTTATGCCCAGAAAAAGACATCTCTTTTAGAGTAATATGGAAATAGTAGAGAAAAACAGTGATTCACATCCAATTTAGTCTACACATCATATTTGGTTCATTCTGGTCCTATTACCAATTGCTATTATTACAACCAGGAAATCCTGAAGGGCCAGATGGCGCATGGGTCAGAGCTTGGTGGATAATGAGCCTCACACTCTACCCTTTTCCACTTAAGTACCAAATCTTGTTGTTAACAAATATAGTATCTCATTAGTTTAAAGAACATATTGGAAAGTCTGGAGGATTTTTCCTTCAAAAAAATCTAATTGGGTAACTTGCCGACATTTCACATGAAACAAGGTGAACCGTCTGGGGACACTTTCATCCATTGCATGGTGGGTCCGGTTTAAGGGCACGTATGTCCTGGCTATATACAGCTAATTGCTGCTGTTACAGCTTCTACAATCCCAGTTATATATAAAAATTGTGAAATATAAAAAAGAAATATGCAGCCCCTGATGATTTCAAATTACTTATATCATTATTAGTTTACACAATAATGCGAGCACTGTTTCATTCATCCAACTTTTGATCCCCTACAAGTAATTTAGATGGGAGTGATGGTAAATTGGTGATTGATAGAAAACCAGATTGTAGCACATACCACTAAGAAGAGGTTGCCTGCTTTCTTAATGCTTTTGTGCCAATGAGAGTATTTATTTTCGTTGTGTATAATTCTCCCGTCTACTTGGATATTTTTCTGCAGTCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTT</genome_strand>
        <mrna_strand>CTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG....................................................................................................................GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735057" ref_strand="+" ref_description="SGN-E735057 [LB14BC08]">
      <seq>ggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaccaaaaaaaananncctcggggggggggcgcgggacccncccccccgaagggggaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94687" stop="62125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94387" g_stop="93966" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93965" i_stop="93668" i_length="298">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93667" g_stop="93648" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="442" r_length="20" r_score="0.750"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="93647" i_stop="92678" i_length="970">
            <donor d_prob="0.600" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.54"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92677" g_stop="92598" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="519" r_length="77" r_score="0.475"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92597" i_stop="92312" i_length="286">
            <donor d_prob="0.000" d_score="0.38"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="92311" g_stop="92285" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="546" r_length="27" r_score="0.519"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E735057" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735057" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94387" e_stop="93966"/>
          <exon e_start="93667" e_stop="93648"/>
          <exon e_start="92677" e_stop="92598"/>
          <exon e_start="92311" e_stop="92285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAGTATTCTGATCTTACTGATTCGACTAATTCAGATTCATGTCACCTAAGATCTAATTAAAGAAGGAAAATACTTCCTACCAAAGCTTGAACTCGAGATATCTAGTTAAGGGTGGAGGGGGATCATATTCATCCCACCACACCCTTGAGGTAGTCTAAAATCATATATCAGGTGCATTGATGAAGGTAATTTCAAATGAAAAACACTATTAGACATTAAAACAAAATCCTACATCACTGAACATGAAGTTTTCCAGCAGAGAGCTAGAAAAAGTAAATAGCAAAAAAGTAAAGGACTTCCGATTAACTCTTTTGATATGTTATTGTTGATAAATGGCAAAATGACTCATGAAGATTCATATAGTTGATCATCAATTAGCTTGGGACTGAAGCATATCCAGAGAGTGAATTTCCTGGGAATGGAATCCATATGGCATTGTAGCAGTCACCAATCAAAAGCACAAACTTACATAATTTCATAAGAGTTGATACAATTCATTCCAAGGAAGAATCAAGTGAATTGTTTTTTAGTTGACACCTCAAACCTCACTAATTCATGGTTGTATAACATCTATGTATTGTTTAGATTCTCTTAATAAAATTTCTGACTCCGTCACTGTATCCACCTCAATCTTACGATAGTGACTGAATACTATTGTTGTTCTCATCAAACCGAATGGAAAGATTAACTAGCCGTACAATATTTCATGAAGAAACATAAAATAGGACAAAGGGAAGTGGATGCCTTGATTATTGACTCTCATCAAGTTTCCAGAACATAATGAAGTAAAATAGTAAAAGCTAATAGGTGAGCCATACCTTGCTCCGTATGAAACGACAAACCAATGTTCAGTCATATGACTTTCCTACTGACTGAATTGCTTGAATTAGTTGAAGGTGCGGAGTTACTACAACACTAAAAGTAGTCATACTAGTCATACTTTTTCTTCATTCGCAAACATCTAATATAAGGTATCTTTCTCCGTTGATCAGATGCGGCTATTTTGTGCCAATTACTCTGGCAATGATCGTGTTGCCTGTACCTTGTGTTGAGATATTGTACAAGAAGAAGAAAATTGACACCCAAGACTTGGAATAGAGAAGAAGGGCGGGCAAGTGTAGTTCAATATTTCTCATTCACACAAGCACACAAGATATAAGGAATTCTATTCACATTTTGAAATGCCAACTATTATACACGGGCGCACATAAAGATGGACTGTCCACTATTTACTGAATTTTGCTTATTTTTGCACAGGTAACATCATTAAAACAAATAAGATAAGAATGAAAGACCCGTGATGATGGCTGGCATAGAGATGATGAGAACATGATCAAGTTTGAAGAATGATTTTCAAGTTTCAAGTACAACAACCCCCTCCTTGAGAAGCAGCTCCATCTCTTCCACCTGATGGTCCTGGAATGCCTCCATATCCAACTTTTATACCATAAGACTGCAGAAAAATATCCAAGTAGACGGGAGAATTATACACAACGAAAATAAATACTCTCATTGGCACAAAAGCATTAAGAAAGCAGGCAACCTCTTCTTAGTGGTATGTGCTACAATCTGGTTTTCTATCAATCACCAATTTACCATCACTCCCATCTAAATTACTTGTAGGGGATCAAAAGTTGGATGAATGAAACA</genome_strand>
        <mrna_strand>GGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAA..........................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAACC--AAAAAAAANANNCCTCG-GGGGGGGGGCGCGGGACCCN..............................................................................................................................................................................................................................................................................................CCCCCCCGAAGGGGGAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217718" ref_strand="+" ref_description="SGN-E217718 [cLEL-25-E21](-)">
      <seq>caatggggaaacaatactcttggtcttaaaagggtttgggtgggtcaaggtgatccangcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtcttatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcatctagtattctgatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94693" stop="93619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94393" g_stop="93919" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="475" polyA_stop="491"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E217718" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94393" e_stop="93919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCA-GCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTC-TATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</genome_strand>
        <mrna_strand>CAATGGGGAAACAATAC-TCTT-GGTCTT-AAAAGGGTTTGGGTGGGTCAAGGTGATCCANGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E217669" ref_strand="+" ref_description="SGN-E217669 [cLEL-25-E11](-)">
      <seq>taaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcatctagtattctgatcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94663" stop="93619"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94364" g_stop="93919" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="462"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E217669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94364" e_stop="93919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</genome_strand>
        <mrna_strand>TAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E347076" ref_strand="+" ref_description="SGN-E347076 [cTOF-25-D6]">
      <seq>caagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcattctagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94715" stop="93630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94415" g_stop="93930" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E347076" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94415" e_stop="93930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCA-TCTAGTA</genome_strand>
        <mrna_strand>CAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATCATTCTAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373510" ref_strand="+" ref_description="SGN-E373510 [TUS-31-H4](-)">
      <seq>ggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggaacatgtcatttttaaaagggcctgatatatatttttagaggaaatcatctagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94929" stop="93630"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94629" g_stop="93931" g_length="699"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="700" r_length="700" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="701" polyA_stop="710"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E373510" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94629" e_stop="93931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGG-ACATGTCATTTTTAAAA-GGCCTGATATATATTTTTTAGAGGAAATCATCTAGT</genome_strand>
        <mrna_strand>GGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGAACATGTCATTTTTAAAAGGGCCTGATATATA-TTTTTAGAGGAAATCATCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738117" ref_strand="+" ref_description="SGN-E738117 [LC12BG09]">
      <seq>attgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcattttttaaaagcctgatatatatttttagagggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96109" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95809" g_stop="95680" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="192" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93932" g_length="791"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="982" r_length="790" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E738117" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>983</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95809" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAG</genome_strand>
        <mrna_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTTAAAAGCCTGATATATA-TTTTTAGAGGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740381" ref_strand="+" ref_description="SGN-E740381 [LC21AG06]">
      <seq>atttatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaggctgatatatatttttagaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96109" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95809" g_stop="95680" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="192" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93933" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="981" r_length="789" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E740381" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>982</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95809" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTA</genome_strand>
        <mrna_strand>ATTTATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAGGCTGATATATA-TTTTTAGAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295645" ref_strand="+" ref_description="SGN-E295645 [cLET-25-E16]">
      <seq>gagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94730" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94430" g_stop="93933" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E295645" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94430" e_stop="93933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTA</genome_strand>
        <mrna_strand>GAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737274" ref_strand="+" ref_description="SGN-E737274 [LC09AD10]">
      <seq>attgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctcccctttctctatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggctgatatatatttttaaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96109" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95809" g_stop="95680" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="192" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93934" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="979" r_length="787" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E737274" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>981</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95809" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93934"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCC-TTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCT</genome_strand>
        <mrna_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTTCTC-TATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGG-CTGATATATA-TTTTTAAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727381" ref_strand="+" ref_description="SGN-E727381 [LA14CB07]">
      <seq>aaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctcccctttctctatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaagacatgtcatttttaaaggcctgatatatttttaaaggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96150" stop="71141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="233" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93937" g_length="786"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="1017" r_length="784" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727381" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>1019</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCC-TTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCA</genome_strand>
        <mrna_strand>AAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTTCTC-TATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAA-GACATGTCATTTTT-AAAGGCCTGATATATTTTTAAAGGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737448" ref_strand="+" ref_description="SGN-E737448 [LC09DE08]">
      <seq>cgataagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94664" stop="93637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94365" g_stop="93938" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="442"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E737448" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94365" e_stop="93938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATC</genome_strand>
        <mrna_strand>CGATAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738865" ref_strand="+" ref_description="SGN-E738865 [LC15BA03]">
      <seq>aaatgggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94663" stop="93637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="93938" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="440"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E738865" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="93938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATC</genome_strand>
        <mrna_strand>AAATGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736768" ref_strand="+" ref_description="SGN-E736768 [LC07AE04]">
      <seq>aaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94663" stop="93637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="93938" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="440"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E736768" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="93938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATC</genome_strand>
        <mrna_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740788" ref_strand="+" ref_description="SGN-E740788 [LC22DE09]">
      <seq>aaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagaggaaatcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94663" stop="93637"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="93938" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="426" polyA_stop="440"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E740788" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="93938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATC</genome_strand>
        <mrna_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555765" ref_strand="-" ref_description="SGN-E555765 [cTSD-1-F19]">
      <seq>atcaagaatttcacaatctgttactagaaaagcttcttttgtgtaaggggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtctccccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatattttagaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96052" stop="93639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95752" g_stop="95680" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="135" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93939" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="917" r_length="782" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E555765" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>919</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555765" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95752" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAAT</genome_strand>
        <mrna_strand>ATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTGTAAGGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA--TTTTAGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E555905" ref_strand="-" ref_description="SGN-E555905 [cTSD-1-M2]">
      <seq>gcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatattttagaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96000" stop="93639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95700" g_stop="95680" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="83" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93939" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="865" r_length="782" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E555905" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555905" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95700" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAAT</genome_strand>
        <mrna_strand>GCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA--TTTTAGAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E554931" ref_strand="+" ref_description="SGN-E554931 [cTSC-5-N7]">
      <seq>atttcctctaaaaatatatatcaggccttttaaaaatgacatgtccttgttttagcattacagatgagatgaaaaatattatctgcacataatgttacattacacataagagaaggggagggggggagatttagaagaaagagtggattgcttttgctctacttagtttagtgaaacttgagactagtcaagacattgttgtttactggatcagccaaatgatcaagaaggttttggtaaggtccaacaccagtaaccaatgcttgaataaagtatcccaaaacagccaacatagcaagtcttccgttcttaatctccttaagcttcaattccttcatagacttttcatcttttccaaatccaagtggattaaacaatgggccacctgggtatgctggatcacctgacccacccaaacccttttcaagacccaagaagtattgtttccccattgaaccaggtttggcccaatcttggaatctcctgtgctcagcaaagcccatgagtgccatttcaagaacaaacaatgtgtaattgtcagcccagtagttgtatgttcctgctggtgggataacaccagtttggaaccatgcaagtgctgtttcttgtgggatgagaccagcttttcccagaatctctggtgctattgcccctgcagctcctaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="93639" stop="94907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93939" g_stop="94607" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E554931" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93939" e_stop="94607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCTCTAAAAAATATATATCAGGCCTTTTAAAAATGACATGTCCTTGTTTTAGCATTACAGATGAGATGAAAAATATTATCTGCACATAATGTTACATTACACATAAGAGAAGGGGAGGGGGGGAGATTTAGAAGAAAGAGTGGATTGCTTTTGCTCTACTTAGTTTAGTGAAACTTGAGACTAGTCAAGACATTGTTGTTTACTGGATCAGCCAAATGATCAAGAAGGTTTTGGTAAGGTCCAACACCAGTAACCAATGCTTGAATAAAGTATCCCAAAACAGCCAACATAGCAAGTCTTCCGTTCTTAATCTCCTTAAGCTTCAATTCCTTCATAGACTTTTCATCTTTTCCAAATCCAAGTGGATTAAACAATGGGCCACCTGGGTATGCTGGATCACCTGACCCACCCAAACCCTTTTCAAGACCCAAGAAGTATTGTTTCCCCATTGAACCAGGTTTGGCCCAATCTTGGAATCTCCTGTGCTCAGCAAAGCCCATGAGTGCCATTTCAAGAACAAACAATGTGTAATTGTCAGCCCAGTAGTTGTATGTTCCTGCTGGTGGGATAACACCAGTTTGGAACCATGCAAGTGCTGTTTCTTGTGGGATGAGACCAGCTTTTCCAAGAATCTCTGGTGCTATTGCCCCTGCAGCTCCTAACAT</genome_strand>
        <mrna_strand>ATTTCCTCT-AAAAATATATATCAGGCCTTTTAAAAATGACATGTCCTTGTTTTAGCATTACAGATGAGATGAAAAATATTATCTGCACATAATGTTACATTACACATAAGAGAAGGGGAGGGGGGGAGATTTAGAAGAAAGAGTGGATTGCTTTTGCTCTACTTAGTTTAGTGAAACTTGAGACTAGTCAAGACATTGTTGTTTACTGGATCAGCCAAATGATCAAGAAGGTTTTGGTAAGGTCCAACACCAGTAACCAATGCTTGAATAAAGTATCCCAAAACAGCCAACATAGCAAGTCTTCCGTTCTTAATCTCCTTAAGCTTCAATTCCTTCATAGACTTTTCATCTTTTCCAAATCCAAGTGGATTAAACAATGGGCCACCTGGGTATGCTGGATCACCTGACCCACCCAAACCCTTTTCAAGACCCAAGAAGTATTGTTTCCCCATTGAACCAGGTTTGGCCCAATCTTGGAATCTCCTGTGCTCAGCAAAGCCCATGAGTGCCATTTCAAGAACAAACAATGTGTAATTGTCAGCCCAGTAGTTGTATGTTCCTGCTGGTGGGATAACACCAGTTTGGAACCATGCAAGTGCTGTTTCTTGTGGGATGAGACCAGCTTTTCCCAGAATCTCTGGTGCTATTGCCCCTGCAGCTCCTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E696719" ref_strand="+" ref_description="SGN-E696719 [LH_Ea09N21](-)">
      <seq>agtcaagcaaggagcaaataggcaactttggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacagtacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaatggaagacttgctatgttggctattttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctcccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatgtcatctgtaatgctaaaacaaggacatgtcattgtaaaaggcctgatatatattttagaggaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95652" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="69" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="93941" g_length="782"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="847" r_length="778" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="848" polyA_stop="861"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E696719" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAA</genome_strand>
        <mrna_strand>CAAGGAGCAAATAGGCAACTTTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAGTACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAATGGAAGACTTGCTATGTTGGCTATTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCT-CCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATGTCATCTGTAATGCTAAAACAAGGACATGTCA-TTGTAAAAGGCCTGATATATA--TTTTAGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E267352" ref_strand="-" ref_description="SGN-E267352 [cLEI-17-I19]">
      <seq>aggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttntaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagagggaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94644" stop="93640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94344" g_stop="93941" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="424"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E267352" ref_strand="-">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267352" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="94344" e_stop="93941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAA</genome_strand>
        <mrna_strand>AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTNTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296891" ref_strand="+" ref_description="SGN-E296891 [cLET-26-G23]">
      <seq>tttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaggcctgatatatatttttagagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94736" stop="93643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94436" g_stop="93943" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E296891" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94436" e_stop="93943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGG</genome_strand>
        <mrna_strand>TTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATA-TTTTTAGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703238" ref_strand="+" ref_description="SGN-E703238 [FA20DG10]">
      <seq>ggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcattttttaaaggcctgatatatattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96004" stop="93649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95704" g_stop="95680" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="87" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93949" g_length="774"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="861" r_length="774" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E703238" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95704" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTT</genome_strand>
        <mrna_strand>GGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTTAAAGGCCTGATATATATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297683" ref_strand="+" ref_description="SGN-E297683 [cLET-28-C5]">
      <seq>ggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94687" stop="15539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94387" g_stop="93950" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E297683" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94387" e_stop="93950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTT</genome_strand>
        <mrna_strand>GGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346381" ref_strand="+" ref_description="SGN-E346381 [cTOF-23-A22]">
      <seq>tgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94761" stop="15546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94461" g_stop="93955" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E346381" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94461" e_stop="93955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATAT</genome_strand>
        <mrna_strand>TGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727624" ref_strand="+" ref_description="SGN-E727624 [LA15BA05]">
      <seq>caaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttacccaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtaaaagcaaaagcatccactctttcttctaaatctcccccctccccttctcttatgtgtaatgtaccattatgtgcagaataatatttttcatctcatctgtaatgctaaaacaaggacatgtcattttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96143" stop="53687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95843" g_stop="95680" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="226" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93956" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="993" r_length="767" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727624" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>993</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95843" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGT-AGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAG-ATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATA</genome_strand>
        <mrna_strand>CAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCCAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAAAAGCAAAAGC-ATCCACTCTTTCTTCTAAATCT-CCCCCCTCCCCTTCTCTTATGTGTAATGTACCATTATGTGCAGAATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732666" ref_strand="+" ref_description="SGN-E732666 [LB02DC02]">
      <seq>catctcacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacatctgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94854" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94554" g_stop="93957" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="599" r_length="599" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E732666" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94554" e_stop="93957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACAT-TGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATAT</genome_strand>
        <mrna_strand>CATCTCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATCTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737422" ref_strand="+" ref_description="SGN-E737422 [LC09DA10]">
      <seq>ccacttggttcaatggggaaacaatacttcttgggtcttgaacagggtttgggtgggtcaggtgatccaacatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaaatagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94701" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94403" g_stop="93957" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E737422" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94403" e_stop="93957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATAT</genome_strand>
        <mrna_strand>CCACTTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAACAGGGTTTGGGTGGGTCAGGTGATCCAACATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAATAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738576" ref_strand="+" ref_description="SGN-E738576 [LC14AG05]">
      <seq>aaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacgttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94663" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94363" g_stop="93957" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E738576" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94363" e_stop="93957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCAC-TTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATAT</genome_strand>
        <mrna_strand>AAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACGTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340233" ref_strand="+" ref_description="SGN-E340233 [cTOF-2-J23]">
      <seq>tttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94736" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94436" g_stop="93959" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E340233" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94436" e_stop="93959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGAT</genome_strand>
        <mrna_strand>TTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E733420" ref_strand="+" ref_description="SGN-E733420 [LB04DG06]">
      <seq>cgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94905" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94606" g_stop="93960" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E733420" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94606" e_stop="93960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGA</genome_strand>
        <mrna_strand>CGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298821" ref_strand="+" ref_description="SGN-E298821 [cLET-44-B13]">
      <seq>gaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94571" stop="15551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94271" g_stop="93960" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="312" r_length="312" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E298821" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298821" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94271" e_stop="93960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGA</genome_strand>
        <mrna_strand>GAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E552376" ref_strand="+" ref_description="SGN-E552376 [cTSB-3-L2]">
      <seq>agcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaaagctaaaacaaggacatgtcatttttaaaaaaaanaaaaaaaaaaaaaaaccccaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95641" stop="93667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95341" g_stop="95285" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="93966" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="814" r_length="757" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="815" polyA_stop="833"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E552376" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95341" e_stop="95285"/>
          <exon e_start="94722" e_stop="93966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG</genome_strand>
        <mrna_strand>AGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAAAGCTAAAACAAGGACATGTCATTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249927" ref_strand="+" ref_description="SGN-E249927 [cLEF-57-P24]">
      <seq>ttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttnaaaaaaaaaaannnaaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94756" stop="93667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94456" g_stop="93966" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="543"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E249927" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94456" e_stop="93966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG</genome_strand>
        <mrna_strand>TTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224421" ref_strand="+" ref_description="SGN-E224421 [cLEL-27-N13](-)">
      <seq>gattccaagattgggccaaccctggttcaatggggaaacaatacttcttgggtctttaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatctttttcatctcatctgtaacgcccaaacaaggacatgtcattttttaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94720" stop="93667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94420" g_stop="93966" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="456" polyA_stop="470"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E224421" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94420" e_stop="93966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG</genome_strand>
        <mrna_strand>GATTCCAAGATTGGGCCAACCCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTTAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATCTTTTTCATCTCATCTGTAACGCCCAAACAAGGACATGTCATTTTTTAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E224921" ref_strand="+" ref_description="SGN-E224921 [cLEL-27-N13](-)">
      <seq>ccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacctgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtcatttttacaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94619" stop="93667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94319" g_stop="93966" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="370"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E224921" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94319" e_stop="93966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG</genome_strand>
        <mrna_strand>CCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACCTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342686" ref_strand="+" ref_description="SGN-E342686 [cTOF-7-H12]">
      <seq>cgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggacatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94932" stop="93677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94632" g_stop="93977" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E342686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94632" e_stop="93977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTC</genome_strand>
        <mrna_strand>CGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728531" ref_strand="+" ref_description="SGN-E728531 [LA18AE04]">
      <seq>aaatattgcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggatccaaactggtgttatcccaccaccaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaagagattccaagattgggccgaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccatgtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaggctatgtacagcaaaagcaatccactctttcttctcaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95632" stop="93681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95338" g_stop="95285" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="93980" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="798" r_length="743" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E728531" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95338" e_stop="95285"/>
          <exon e_start="94722" e_stop="93980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAG-GCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACAT</genome_strand>
        <mrna_strand>AAATATTGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGATCCAAACTGGTGTTATCCCACCACCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAAGAGATTCCAAGATTGGGCCGAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCATGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAGGCTATGTACAGCAAAAGCAATCCACTCTTTCTTCTCAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E349011" ref_strand="+" ref_description="SGN-E349011 [cTOF-29-P3]">
      <seq>ttgaaattgcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94756" stop="93681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94456" g_stop="93981" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E349011" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94456" e_stop="93981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACA</genome_strand>
        <mrna_strand>TTGAAATTGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294829" ref_strand="+" ref_description="SGN-E294829 [cLET-17-L12]">
      <seq>aagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctnaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94714" stop="93686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94414" g_stop="93982" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E294829" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94414" e_stop="93982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGAC</genome_strand>
        <mrna_strand>AAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTNAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298548" ref_strand="+" ref_description="SGN-E298548 [cLET-41-J7]">
      <seq>aagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaacaaggaaaagaaacataatgtgcaaataatattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94714" stop="93679"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94414" g_stop="93982" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E298548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94414" e_stop="93982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGAC</genome_strand>
        <mrna_strand>AAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732923" ref_strand="+" ref_description="SGN-E732923 [LB03CA08]">
      <seq>cccattaggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95639" stop="93686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95340" g_stop="95285" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="93983" g_length="740"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="796" r_length="740" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E732923" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>796</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95340" e_stop="95285"/>
          <exon e_start="94722" e_stop="93983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGA</genome_strand>
        <mrna_strand>CCCATTAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342441" ref_strand="+" ref_description="SGN-E342441 [cTOF-8-E2]">
      <seq>gcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcatctgtaatgctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94933" stop="93686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94633" g_stop="93983" g_length="651"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="651" r_length="651" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E342441" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342441" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94633" e_stop="93983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGA</genome_strand>
        <mrna_strand>GCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702824" ref_strand="+" ref_description="SGN-E702824 [FA19DB12]">
      <seq>aaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccacttcttctttctaatctccccccctcccctttctctatgtgtaatgtaacattatgtgcagataatattttcatctcatctgtaatgctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="93681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95859" g_stop="95680" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93989" g_length="734"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="975" r_length="733" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="976" polyA_stop="998"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E702824" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>976</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95859" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCC-TTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAA</genome_strand>
        <mrna_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTTCTTCTTTCTAATCTCCCCCCCTCCCCTTTCTC-TATGTGTAATGTAACATTATGTGCAGATAATA-TTTTCATCTCATCTGTAATGCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726800" ref_strand="+" ref_description="SGN-E726800 [LA12DD10]">
      <seq>aggaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctnaatctccccccctccccttctcttatgtgtaaggtaacattatgtgcagaataatatttttcatctcatctgnaatgcctaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96150" stop="93681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93996" g_length="727"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="964" r_length="728" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="969" polyA_stop="987"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E726800" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAG-ATAATATTTTTCATCTCATCTGTAAT</genome_strand>
        <mrna_strand>AGGAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTNAATCTCCCCCCCTCCCCTTCTCTTATGTGTAAGGTAACATTATGTGCAGAATAATATTTTTCATCTCATCTGNAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736779" ref_strand="+" ref_description="SGN-E736779 [LC07AF09]">
      <seq>aacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcctttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagttcactaaactaagtagagcaaaagcaatccactctttcctctaaatctccccccctcccctttctctatgtgtaatgtaacattatgtgcagataatatttttcatctcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96149" stop="93704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95849" g_stop="95680" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="93998" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="956" r_length="724" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E736779" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>957</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95849" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="93998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTA</genome_strand>
        <mrna_strand>AACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCCTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAG-TTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCCTCTAAATCTCCCCCCCTCCCCTTTCTCTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730081" ref_strand="+" ref_description="SGN-E730081 [LA23AA06]">
      <seq>aaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctnctatgtgtaatgtaacattatgtgcagataatattttcatctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96141" stop="93704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95841" g_stop="95680" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94005" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="941" r_length="717" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="942" polyA_stop="952"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E730081" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95841" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTC</genome_strand>
        <mrna_strand>AAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTNCTATGTGTAATGTAACATTATGTGCAGATAATA-TTTTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E713840" ref_strand="+" ref_description="SGN-E713840 [FB09DC01]">
      <seq>ggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataatatttttcatctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94723" stop="93704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94423" g_stop="94005" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="433"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E713840" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94423" e_stop="94005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTC</genome_strand>
        <mrna_strand>GGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344652" ref_strand="+" ref_description="SGN-E344652 [cTOF-14-L19]">
      <seq>tttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctccccttctcttatgtgtaatgtaacattatgtgcagataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94613" stop="93716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94313" g_stop="94019" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="296" polyA_stop="306"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E344652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94313" e_stop="94019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATA</genome_strand>
        <mrna_strand>TTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288678" ref_strand="+" ref_description="SGN-E288678 [cLES-8-C17]">
      <seq>agcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtggagcaaaagcaatccactcttttttctaaatctacccccctccccttctcttatgtgtaatgtaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94839" stop="93731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94539" g_stop="94031" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E288678" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288678" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94539" e_stop="94031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACAT</genome_strand>
        <mrna_strand>AGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTGGAGCAAAAGCAATCCACTCTTTTTTCTAAATCTACCCCCCTCCCCTTCTCTTATGTGTAATGTAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700156" ref_strand="+" ref_description="SGN-E700156 [FA12BC01]">
      <seq>caccatcaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaaacttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatggtttgacttatctcaagttttccctaaactaagtagaacaaaagcaatccactcttttcttctaaatctcccccccccccctctcttaggtgtaatggtacattatgtgcaaaataatattttcctctccaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94038" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="922" r_length="686" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E700156" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700156" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAG-TTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTC-TTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAAT</genome_strand>
        <mrna_strand>CACCATCAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAACTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGGTTTGACTTATCTCAAGTTTTCCCTAAACTAAGTAGAACAAAAGCAATCCACTCTTTTCTTCTAAATCTCCCCCCC-CCCCCTCTCTTAGGTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729464" ref_strand="+" ref_description="SGN-E729464 [LA21AF02]">
      <seq>aaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctcccccctccccttctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96160" stop="93745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95860" g_stop="95680" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94045" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="920" r_length="677" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729464" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>921</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95860" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTAT</genome_strand>
        <mrna_strand>AAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCT-CCCCCCTCCCCTTCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729543" ref_strand="+" ref_description="SGN-E729543 [LA21BE09]">
      <seq>gaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactcttttctctaaatctccccccctccccttctcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96131" stop="93745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95831" g_stop="95680" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94045" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="892" r_length="678" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729543" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95831" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTAT</genome_strand>
        <mrna_strand>GAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTTCTCTAAATCTCCCCCCCTCCCCTTCTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736201" ref_strand="+" ref_description="SGN-E736201 [LC04CH12]">
      <seq>gaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagaagcaaagcaatccactccttcttctaaatctccccccctccccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96131" stop="93751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95831" g_stop="95680" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94051" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="886" r_length="672" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E736201" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>886</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95831" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTC</genome_strand>
        <mrna_strand>GAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAAGCAAAGCAATCCACTCCTTCTTCTAAATCTCCCCCCCTCCCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E710145" ref_strand="+" ref_description="SGN-E710145 [FA54BF01]">
      <seq>cgataaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttacccaaaccttcttgatcatttggctgatccagtaaacaccaatgtcttgactagtctcaagttccctaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96160" stop="93753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95862" g_stop="95680" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94053" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="914" r_length="669" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E710145" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710145" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95862" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCT</genome_strand>
        <mrna_strand>CGATAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCCAAACCTTCTTGATCATTTGGCTGATCCAGTAAACACCAATGTCTTGACTAGTCTCAAG-TTCCCTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735572" ref_strand="+" ref_description="SGN-E735572 [LC02AG02]">
      <seq>caaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagccaaagcaatccactctttcctctaaatctccccccctcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94053" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="905" r_length="669" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E735572" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCT</genome_strand>
        <mrna_strand>CAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACC-AAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCCAAAGCAATCCACTCTTTCCTCTAAATCTCCCCCCCTCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731349" ref_strand="+" ref_description="SGN-E731349 [LA26DE02]">
      <seq>aaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactcttttctctaaatctccccccctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96128" stop="93754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95829" g_stop="95680" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94054" g_length="669"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="881" r_length="669" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731349" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>881</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95829" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCC</genome_strand>
        <mrna_strand>AAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTTCTCTAAATCTCCCCCCCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E737669" ref_strand="+" ref_description="SGN-E737669 [LC10DB11]">
      <seq>caaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccccctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94056" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="903" r_length="667" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E737669" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>903</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCC</genome_strand>
        <mrna_strand>CAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729979" ref_strand="+" ref_description="SGN-E729979 [LA22CG03]">
      <seq>aaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttacaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctcccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="93760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95859" g_stop="95680" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94060" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="904" r_length="662" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729979" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95859" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCC</genome_strand>
        <mrna_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTA-CAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E730490" ref_strand="+" ref_description="SGN-E730490 [LA24BB11]">
      <seq>ccattaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctcccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96143" stop="93760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95844" g_stop="95680" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="227" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94060" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="890" r_length="663" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E730490" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95844" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCC</genome_strand>
        <mrna_strand>CCATTAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731377" ref_strand="+" ref_description="SGN-E731377 [LA26DG08]">
      <seq>aaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagaacaaaagcaatccactctttcttctaaatctccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96150" stop="93761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="233" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94061" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="895" r_length="662" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731377" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCC</genome_strand>
        <mrna_strand>AAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAACAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731028" ref_strand="+" ref_description="SGN-E731028 [LA25DG03]">
      <seq>ccatacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtctttgactagtctcagtttcactaaactaagtagagcaaaagcaatccactctttcttctaaatctccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96147" stop="93761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95848" g_stop="95680" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="231" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94061" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="893" r_length="662" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731028" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>893</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95848" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTC-TTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCC</genome_strand>
        <mrna_strand>CCATACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTTGACTAGTCTC-AGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732777" ref_strand="+" ref_description="SGN-E732777 [LB03AE04]">
      <seq>cgcattaggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagtagagcaaaagcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95640" stop="93785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95341" g_stop="95285" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="94085" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="694" r_length="638" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E732777" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95341" e_stop="95285"/>
          <exon e_start="94722" e_stop="94085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATC</genome_strand>
        <mrna_strand>CGC-ATTAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726675" ref_strand="+" ref_description="SGN-E726675 [LA12CA08]">
      <seq>aaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96158" stop="93800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95858" g_stop="95680" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94100" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="864" r_length="623" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E726675" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95858" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGT</genome_strand>
        <mrna_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731796" ref_strand="+" ref_description="SGN-E731796 [LA28AH04]">
      <seq>caaaaacaaacaaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaactaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="237" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94100" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="859" r_length="622" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731796" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731796" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAA-GAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGT</genome_strand>
        <mrna_strand>CAAAAACAAACAAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACC-AAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698986" ref_strand="+" ref_description="SGN-E698986 [FA08AH02]">
      <seq>caataaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttccctaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="93804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95860" g_stop="95680" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94104" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="862" r_length="619" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E698986" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95860" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACT</genome_strand>
        <mrna_strand>CAATAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCCCTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697860" ref_strand="+" ref_description="SGN-E697860 [FA04CA12]">
      <seq>cgataaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96148" stop="93804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="233" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94104" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="852" r_length="619" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E697860" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACT</genome_strand>
        <mrna_strand>CGATAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E298999" ref_strand="+" ref_description="SGN-E298999 [cLET-42-F23]">
      <seq>aattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactgatgttggaacttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctcaagtttcactaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94775" stop="93804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94475" g_stop="94104" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E298999" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94475" e_stop="94104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACT</genome_strand>
        <mrna_strand>AATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGATGTTGGAACTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728231" ref_strand="+" ref_description="SGN-E728231 [LA17AE04]">
      <seq>aaatatgcaactctggtttgcatccaaacaaagcctttcgtacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggccagttctccatgttaggagctgcaggggctctagcaccaccagattcttggaaaagctggtctcatcccgcaagaaacagcacttgcatggatccaaactggtgttatcccaccaccaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatgacactcttgggctttgctgagcacaggagattccaagattgcgccgaacctggttcaatgggaaaacaatacttcttgggtctagaaaagggtttggtgtgggtcacgtgatccagcataccgctgtggcccattgtttaacccacttggatttggaaaagatgaacagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatggtgtctgtatagggatactttatccgagcattggttactggtgttggaccttaccataaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactaggctcaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95638" stop="93814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95338" g_stop="95285" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="94114" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="665" r_length="611" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E728231" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95338" e_stop="95285"/>
          <exon e_start="94722" e_stop="94114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCA-GAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGG-GTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTT</genome_strand>
        <mrna_strand>AAATATGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCGTACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGCCAGTTCTCCATGTTAGGAGCTGCAGGGGCTCTAGCACCACCAGATTCTTGGAAAAGCTGGTCTCATCCCGCAAGAAACAGCACTTGCATGGATCCAAACTGGTGTTATCCCACCACCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGACACTCTTGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGCGCCGAACCTGGTTCAATGGGAAAACAATACTTCTTGGGTCTAGAAAAGGGTTTGGTGTGGGTCACGTGATCCAGCATACCGCTGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAACAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGGTGTCTGTATAGGGATACTTTATCCGAGCATTGGTTACTGGTGTTGGACCTTACCATAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGGCTCAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E700558" ref_strand="+" ref_description="SGN-E700558 [FA13BH04]">
      <seq>tattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96173" stop="93819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95873" g_stop="95680" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="256" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94119" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="860" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E700558" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>860</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95873" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTC</genome_strand>
        <mrna_strand>TATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E738021" ref_strand="+" ref_description="SGN-E738021 [LC12AC02]">
      <seq>caataattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgactagtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96127" stop="93819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95831" g_stop="95680" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94119" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="818" r_length="604" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E738021" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95831" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTC</genome_strand>
        <mrna_strand>CAATAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E736970" ref_strand="+" ref_description="SGN-E736970 [LC07DH12]">
      <seq>gataaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatcccagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatgtcttgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96131" stop="93825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95831" g_stop="95680" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94125" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="812" r_length="598" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E736970" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>812</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95831" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94125"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACT</genome_strand>
        <mrna_strand>GATAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCCAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727387" ref_strand="+" ref_description="SGN-E727387 [LA14CC01]">
      <seq>aaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggttttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgatccagtaaacaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="93833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95859" g_stop="95680" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94133" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="833" r_length="591" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727387" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95859" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGG-TTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATG</genome_strand>
        <mrna_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E702897" ref_strand="+" ref_description="SGN-E702897 [FA20AA07]">
      <seq>aaatactttgtccccttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattgggtactggtgttggaccttaccaaaaccttcctgatcatttggctgatccagtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96241" stop="93842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95941" g_stop="95680" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="324" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94142" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="905" r_length="581" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E702897" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>905</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95941" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAA</genome_strand>
        <mrna_strand>AAATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGGTACTGGTGTTGGACCTTACCAAAACCTTCCTGATCATTTGGCTGATCCAGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729894" ref_strand="+" ref_description="SGN-E729894 [LA22BG02]">
      <seq>aacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaacctttctgatcatttggctgatccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96149" stop="93845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95849" g_stop="95680" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94145" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="809" r_length="577" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729894" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95849" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAG</genome_strand>
        <mrna_strand>AACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACC-AAACCTTTCTGATCATTTGGCTGATCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727910" ref_strand="+" ref_description="SGN-E727910 [LA16AE03]">
      <seq>aaacattgaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaaccttcttgatcatttggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96141" stop="93849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95841" g_stop="95680" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="224" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94149" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="798" r_length="574" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727910" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727910" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95841" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGAT</genome_strand>
        <mrna_strand>AAACATTGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E709712" ref_strand="+" ref_description="SGN-E709712 [FA52DF07]">
      <seq>agcctttaacaaacaaaaaagagaagaaaaattatggcaactcaccctttgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacactctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattacgaacggaagacttgctatgttggctgttttgggatactttatccaagcattggctactggtgttggaaccttacaaaaccttcttgatcatttggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96149" stop="93851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95856" g_stop="95680" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="239" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94151" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="811" r_length="572" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E709712" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95856" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTG</genome_strand>
        <mrna_strand>AGCCTTTAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCACCCTTTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACACTCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTACGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGCTACTGGTGTTGGAACCTTACAAAACCTTCTTGATCATTTGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E692879" ref_strand="+" ref_description="SGN-E692879 [LH_Ea09N21]">
      <seq>ccggtattatggctactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacagtacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaatggaagacttgctatgttggctattttgggatactttattcaagcattggttactggtgttggaccttaccaaaaaccttcttgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96126" stop="93858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95831" g_stop="95680" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="214" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94158" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="780" r_length="566" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E692879" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95831" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94158"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACC-AAAACCTTCTTGATCAT</genome_strand>
        <mrna_strand>CCGGTATTATGGCTACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAGTACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAATGGAAGACTTGCTATGTTGGCTATTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAAACCTTCTTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E703871" ref_strand="+" ref_description="SGN-E703871 [FA22CG10]">
      <seq>ttcttctcaaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatcccagcattggttactggtgttggaccttaccaaaaccttcttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96168" stop="93859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95868" g_stop="95680" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94159" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="815" r_length="564" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E703871" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95868" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCA</genome_strand>
        <mrna_strand>TTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCCAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345640" ref_strand="+" ref_description="SGN-E345640 [cTOF-18-I6]">
      <seq>accagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggttactgggtgttggaccttaccaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95652" stop="93870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="72" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="94170" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="626" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E345640" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACT-GGTGTTGGACCTTACCAAAAC</genome_strand>
        <mrna_strand>CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGGTGTTGGACCTTACCAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728880" ref_strand="+" ref_description="SGN-E728880 [LA19BA08]">
      <seq>aaagagaagaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaagagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="93872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="221" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94171" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="773" r_length="552" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E728880" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAA</genome_strand>
        <mrna_strand>AAAGAGAAGA-AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAAGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E728649" ref_strand="+" ref_description="SGN-E728649 [LA18CA06]">
      <seq>aagagaagaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggaccttaccaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96138" stop="93871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95838" g_stop="95680" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="220" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94171" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="772" r_length="552" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E728649" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95838" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAA</genome_strand>
        <mrna_strand>AAGAGAAGA-AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731548" ref_strand="+" ref_description="SGN-E731548 [LA27BH06]">
      <seq>aaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcattggttactggtgttggacctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96146" stop="93877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95846" g_stop="95680" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="229" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94177" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="775" r_length="546" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731548" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95846" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTA</genome_strand>
        <mrna_strand>AAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATTGGTTACTGGTGTTGGACCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E346183" ref_strand="+" ref_description="SGN-E346183 [cTOF-23-C1]">
      <seq>aaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcattggtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="93893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="222" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94193" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="752" r_length="530" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E346183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTA</genome_strand>
        <mrna_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E345878" ref_strand="+" ref_description="SGN-E345878 [cTOF-24-G22]">
      <seq>ttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcgattcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaacntggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgntttgttcttgaaatggcactncatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcagggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaaaatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttnggctgttttgggatactttattcaagcattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96082" stop="93895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95782" g_stop="95680" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="165" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94195" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="698" r_length="533" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E345878" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95782" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAAC-TGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTG-TTTGTTCTTGAAATGGCACT-CATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCA-GGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTT-GGCTGTTTTGGGATACTTTATTCAAGCATTGGT</genome_strand>
        <mrna_strand>TTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGATTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACNTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGNTTTGTTCTTGAAATGGCACTNCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAAATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTNGGCTGTTTTGGGATACTTTATTCAAGCATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727951" ref_strand="+" ref_description="SGN-E727951 [LA16BA01]">
      <seq>aggaaccctaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaanagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttatccaagcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96157" stop="93898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95860" g_stop="95680" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="243" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94198" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="768" r_length="525" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727951" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95860" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATT</genome_strand>
        <mrna_strand>AGGAACCCTAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAANAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATCCAAGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288094" ref_strand="+" ref_description="SGN-E288094 [cLES-7-G1]">
      <seq>gcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggatactttattcaagcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94933" stop="93899"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94633" g_stop="94199" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E288094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94633" e_stop="94199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCAT</genome_strand>
        <mrna_strand>GCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325532" ref_strand="+" ref_description="SGN-E325532 [cTOC-15-K21]">
      <seq>aagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaanagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgntggctgttttgggatacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96113" stop="93908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95813" g_stop="95680" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="196" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94208" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="711" r_length="515" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E325532" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95813" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTA</genome_strand>
        <mrna_strand>AAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAANAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGNTGGCTGTTTTGGGATACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343488" ref_strand="+" ref_description="SGN-E343488 [cTOF-19-I23]">
      <seq>attgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacatntgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaangtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttgggctgttttgggatacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96109" stop="93908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95809" g_stop="95680" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="192" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94208" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="710" r_length="518" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E343488" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95809" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACAT-TGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTT-GGCTGTTTTGGGATACTTTA</genome_strand>
        <mrna_strand>ATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATNTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAANGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGGCTGTTTTGGGATACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342429" ref_strand="+" ref_description="SGN-E342429 [cTOF-8-A2]">
      <seq>cggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggagggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaagtgaagcttaaggagattaagaacggaagacttgctatgttggctgatttgggatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94916" stop="93912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94616" g_stop="94212" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E342429" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94616" e_stop="94212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATAC</genome_strand>
        <mrna_strand>CGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGAGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAAGTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGATTTGGGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E330324" ref_strand="+" ref_description="SGN-E330324 [cTOD-4-F14]">
      <seq>gaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttgggata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96026" stop="93913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95726" g_stop="95680" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="109" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94213" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="619" r_length="510" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E330324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95726" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATA</genome_strand>
        <mrna_strand>GAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339885" ref_strand="+" ref_description="SGN-E339885 [cTOF-3-K18]">
      <seq>aaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaangtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96158" stop="93918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95858" g_stop="95680" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94218" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="746" r_length="505" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E339885" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95858" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTG</genome_strand>
        <mrna_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAANGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGG-AAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E697582" ref_strand="+" ref_description="SGN-E697582 [FA03BH07]">
      <seq>caggaattcggcacgaccttaagggcacaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttggnactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgctatgttggctgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95852" g_stop="95680" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="199" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94218" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="766" r_length="505" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E697582" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697582" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95852" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTG</genome_strand>
        <mrna_strand>ACAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGNACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339973" ref_strand="+" ref_description="SGN-E339973 [cTOF-3-A15]">
      <seq>tatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttgggatttggaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaagacttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96178" stop="93933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95878" g_stop="95680" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="261" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94233" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="751" r_length="490" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E339973" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95878" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCT</genome_strand>
        <mrna_strand>TATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGGATTTGGAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729390" ref_strand="+" ref_description="SGN-E729390 [LA20DF08]">
      <seq>aaacaaaaaagagaagaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaaggagattaagaacggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96146" stop="93940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95846" g_stop="95680" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="228" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94240" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="711" r_length="483" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729390" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95846" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAG</genome_strand>
        <mrna_strand>AAACAAAAAAGAGAAGA-AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E731260" ref_strand="+" ref_description="SGN-E731260 [LA26CD12]">
      <seq>cattaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatngaaagtctatgaaggaatttgagcttaaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96146" stop="93953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="233" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94253" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="703" r_length="470" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E731260" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGA</genome_strand>
        <mrna_strand>CATTAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATNGAAAGTCTATGAAGGAATTTGAGCTTAAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729042" ref_strand="+" ref_description="SGN-E729042 [LA19DB08]">
      <seq>aaaaaacaaaaacaaacaaaaaagagaagaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaagtctatgaaggaattgaagcttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="93956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95859" g_stop="95680" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94256" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="708" r_length="467" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729042" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95859" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGG</genome_strand>
        <mrna_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGA-AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348503" ref_strand="+" ref_description="SGN-E348503 [cTOF-30-B17]">
      <seq>gaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacatntgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttggggtgggtcaaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaagatgaaaagtctatgaaggaattgaagcttaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96129" stop="93956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95829" g_stop="95680" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="212" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94256" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="681" r_length="469" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E348503" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95829" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACAT-TGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTT-GGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGG</genome_strand>
        <mrna_strand>GAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATNTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGGTGGGTCAAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGG-AAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340041" ref_strand="+" ref_description="SGN-E340041 [cTOF-3-M22]">
      <seq>caaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="93959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94259" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="701" r_length="465" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E340041" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTA</genome_strand>
        <mrna_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E373511" ref_strand="+" ref_description="SGN-E373511 [TUS-31-H4]">
      <seq>aaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96152" stop="93960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95852" g_stop="95680" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="235" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94260" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="698" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E373511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95852" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTT</genome_strand>
        <mrna_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342806" ref_strand="+" ref_description="SGN-E342806 [cTOF-7-J15]">
      <seq>caaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgntttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcanggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96147" stop="93960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95847" g_stop="95680" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="230" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94260" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="695" r_length="465" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E342806" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95847" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTG-TTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCA-GGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTT</genome_strand>
        <mrna_strand>CAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGNTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCANGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348551" ref_strand="+" ref_description="SGN-E348551 [cTOF-30-H24]">
      <seq>ctttgtccccttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgntttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96236" stop="93961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95936" g_stop="95680" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="319" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94261" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="783" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E348551" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95936" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTG-TTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCT</genome_strand>
        <mrna_strand>CTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGNTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E339884" ref_strand="+" ref_description="SGN-E339884 [cTOF-3-K16]">
      <seq>acaaacaaaaaagagaagagaccttatggcaactcaagcattgatctgttcatcatcaattaacactttagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagctacttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgaatccaaacaaagcctttcatacttggatggaagtcttcccggtagactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccatagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgcttgctcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaaggaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96148" stop="93965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95848" g_stop="95680" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="231" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94265" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="690" r_length="459" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E339884" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95848" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGT-GACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGA</genome_strand>
        <mrna_strand>ACAAACAAAAAAGAGAAGAGACCTTATGGCAACTCAAGCATTGATCTGTTCATCATCAATTAACACTTTAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTACTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGAATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTAGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCATAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGCTTGCTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348596" ref_strand="+" ref_description="SGN-E348596 [cTOF-30-O11]">
      <seq>aattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaagtctatgaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96127" stop="93971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95827" g_stop="95680" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="210" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94271" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="662" r_length="452" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E348596" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95827" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94271"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGG</genome_strand>
        <mrna_strand>AATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729189" ref_strand="+" ref_description="SGN-E729189 [LA20BA12]">
      <seq>aaacaaacaaaaaagagaagaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcangtgatccagcatacccaggtggcccattgtttaacccacttggatttggaaaagatgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96150" stop="93981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94281" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="674" r_length="442" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729189" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAG</genome_strand>
        <mrna_strand>AAACAAACAAAAAAGAGAAGA-AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCANGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGAAAAGATGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372595" ref_strand="+" ref_description="SGN-E372595 [TUS-31-I23]">
      <seq>agaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttggatttggaaaagatgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96135" stop="93981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95835" g_stop="95680" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94281" g_length="442"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="660" r_length="442" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E372595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95835" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAG</genome_strand>
        <mrna_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729323" ref_strand="+" ref_description="SGN-E729323 [LA20CH03]">
      <seq>ggtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacccaggtggcccattgtttaacccacttggatttgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96181" stop="93990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95882" g_stop="95680" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="265" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94290" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="698" r_length="433" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95882" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAA</genome_strand>
        <mrna_strand>GGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAACCCACTTGGATTTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342306" ref_strand="+" ref_description="SGN-E342306 [cTOF-8-M16]">
      <seq>agaaattatggcaactcaagcattgatctcttgatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcanngtgatccagcatacccaggtggcccattgnttaatccacttggattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96130" stop="93996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95830" g_stop="95680" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94296" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="641" r_length="428" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E342306" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95830" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCA-GGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTT</genome_strand>
        <mrna_strand>AGAAATTATGGCAACTCAAGCATTGATCTCTTGATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCANNGTGATCCAGCATACCCAGGTGGCCCATTGNTTAATCCACTTGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328681" ref_strand="+" ref_description="SGN-E328681 [cTOC-23-M5]">
      <seq>caactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttggggtgggtcaggtgatccagcatacccaggtggcccattgtttaatccacttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96119" stop="93999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95819" g_stop="95680" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="202" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94299" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="627" r_length="425" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E328681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95819" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTT-GGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGA</genome_strand>
        <mrna_strand>CAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E701016" ref_strand="+" ref_description="SGN-E701016 [FA14DC01]">
      <seq>tttatattattcttcttctcagaaaagctacaaccatcaaaaaagagaagaaaaattatggcgactcaagcattgatctcttcatcatcaattaccacttcagctgaagctgcaagacaaattattggatcgagaatgtcacaatctgttactaaaaaagctgcttttgatgtaagggctacttccactccaccagtcaaggaaggagcaaatacgcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggatgactttgggtttgatcccttgggactctcggaccctgaaggcacaggaggttgcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcgggtcgccatgttaagagctgcatgggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacaaattgtttgctcttgaaatggcactcatgagctttgctgagcacaggagattccaaaattgggccaaacctggttcaatggggaaacaatacttcttgggactagaaaagggtttgggtgggccacgtgatccaccataaccaggtggcccattgtttaacccacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96180" stop="94001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95880" g_stop="95680" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.92"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="263" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94301" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="686" r_length="423" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E701016" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95880" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGG-TGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTG</genome_strand>
        <mrna_strand>TTTATATTATTCTTCTTCTCAGAAAAGCTACAACCATCAAAAAAGAGAAGAAAAATTATGGCGACTCAAGCATTGATCTCTTCATCATCAATTACCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCGAGAATGTCACAATCTGTTACTAAAAAAGCTGCTTTTGATGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................GAAGGAGCAAATACGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGATGACTTTGGGTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTGCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGGTCGCCATGTTAAGAGCTGCATGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACAAATTGTTTGCTCTTGAAATGGCACTCATGAGCTTTGCTGAGCACAGGAGATTCCAAAATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGACTAGAAAAGGGTTTGGGTGGGCCACGTGATCCACCATAACCAGGTGGCCCATTGTTTAACCCACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341689" ref_strand="+" ref_description="SGN-E341689 [cTOF-9-K7]">
      <seq>aaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacanttgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttganaagggtttgggtgggtcaaggtgatccagcatacccaggtggccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96140" stop="94017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95840" g_stop="95680" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="223" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94317" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="631" r_length="408" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E341689" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95840" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA-TTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTC-AGGTGATCCAGCATACCCAGGTGGCCCA</genome_strand>
        <mrna_strand>AAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACANTTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGANAAGGGTTTGGGTGGGTCAAGGTGATCCAGCATACCCAGGTGGCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E740026" ref_strand="+" ref_description="SGN-E740026 [LC19DB04]">
      <seq>gctttatattattcttcttctcaaaaaaacaaaaacaaacaaaaacgagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaataaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggcctaacctggttcaatggggaaacaatacttcttgggtcttgaaaaagggttgggtgggtcaggtgatccagcatacccaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96180" stop="94023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95882" g_stop="95680" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="265" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94323" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="665" r_length="400" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E740026" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95882" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGT</genome_strand>
        <mrna_strand>GCTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAACGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAATAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCTAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAAGGGTTGGGTGGGTCAGGTGATCCAGCATACCCAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299315" ref_strand="+" ref_description="SGN-E299315 [cLET-43-D22]">
      <seq>aagcaaggagcaaataggcaactctggtttgtatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95648" stop="94027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95513" g_stop="95511" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95510" i_stop="95347" i_length="164">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="65" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94327" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="461" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E299315" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95513" e_stop="95511"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCC</genome_strand>
        <mrna_strand>AAG....................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGTATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324988" ref_strand="+" ref_description="SGN-E324988 [cTOC-11-H18]">
      <seq>tggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggtttgggtgggtcaggtgatccagcatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="95625" stop="94028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95325" g_stop="95285" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94722" g_stop="94328" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="436" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E324988" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95325" e_stop="95285"/>
          <exon e_start="94722" e_stop="94328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACC</genome_strand>
        <mrna_strand>TGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E708016" ref_strand="+" ref_description="SGN-E708016 [FA34CE01]">
      <seq>ccattaggggaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttccttgggtcttgaaaagggtttgggtgggtcaggtgatccagcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96140" stop="94030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95850" g_stop="95680" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="233" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94330" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="627" r_length="394" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E708016" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95850" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTT-CTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATA</genome_strand>
        <mrna_strand>CCATTAGGGGAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729013" ref_strand="+" ref_description="SGN-E729013 [LA19CG07]">
      <seq>cttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggttgggtgggtcaggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96227" stop="94040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95927" g_stop="95680" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="310" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94340" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="692" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E729013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E729013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95927" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTG</genome_strand>
        <mrna_strand>CTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGG-TTGGGTGGGTCAGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288482" ref_strand="+" ref_description="SGN-E288482 [cLES-8-A14]">
      <seq>aatagcaccagagattcttggaaaagctggtctcattccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgagtcttgaaaagggtttgggtgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="94887" stop="94046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94587" g_stop="94346" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E288482" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94587" e_stop="94346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGT</genome_strand>
        <mrna_strand>AATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATTCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGAGTCTTGAAAAGGGTTTGGGTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E344823" ref_strand="+" ref_description="SGN-E344823 [cTOF-21-E4]">
      <seq>tttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaagggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96180" stop="94056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95880" g_stop="95680" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="263" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94356" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="630" r_length="367" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E344823" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95880" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGT</genome_strand>
        <mrna_strand>TTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341889" ref_strand="+" ref_description="SGN-E341889 [cTOF-9-C9]">
      <seq>aacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacanctactgggctgacaattacacattggttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaaatctttcttgggtcttgaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96149" stop="94059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95849" g_stop="95680" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94359" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="597" r_length="365" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E341889" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95849" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAAC-AATACTTCTTGGGTCTTGAAAAG</genome_strand>
        <mrna_strand>AACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACANCTACTGGGCTGACAATTACACATTGGTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAAATCTTTCTTGGGTCTTGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285698" ref_strand="+" ref_description="SGN-E285698 [cLES-5-F16]">
      <seq>aaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96156" stop="94060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95856" g_stop="95680" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="239" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94360" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="602" r_length="363" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E285698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95856" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAA</genome_strand>
        <mrna_strand>AAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300598" ref_strand="+" ref_description="SGN-E300598 [cLET-45-M20]">
      <seq>aaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgtgccaaacctggttcaatggggaaacaatacttcttgggtcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96142" stop="94060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95842" g_stop="95680" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94360" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="588" r_length="363" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E300598" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95842" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAA</genome_strand>
        <mrna_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGTGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288788" ref_strand="+" ref_description="SGN-E288788 [cLES-17-C12]">
      <seq>aaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96142" stop="94063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95842" g_stop="95680" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94363" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="585" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E288788" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95842" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</genome_strand>
        <mrna_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299222" ref_strand="+" ref_description="SGN-E299222 [cLET-43-K1]">
      <seq>aagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96138" stop="94063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95838" g_stop="95680" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="221" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94363" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="581" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E299222" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95838" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</genome_strand>
        <mrna_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324905" ref_strand="+" ref_description="SGN-E324905 [cTOC-11-L8]">
      <seq>aattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96127" stop="94063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95827" g_stop="95680" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="210" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94363" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="570" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E324905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95827" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</genome_strand>
        <mrna_strand>AATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313269" ref_strand="+" ref_description="SGN-E313269 [cTOA-18-J15]">
      <seq>tcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96099" stop="94063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95799" g_stop="95680" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="182" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94363" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="542" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E313269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95799" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</genome_strand>
        <mrna_strand>TCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343104" ref_strand="+" ref_description="SGN-E343104 [cTOF-11-N24]">
      <seq>aatactttgtccccttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacatttgtttgttcttgaaatnggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96240" stop="94064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95940" g_stop="95680" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="323" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94364" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="684" r_length="361" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E343104" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95940" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA-TTGTTTGTTCTTGAAAT-GGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</genome_strand>
        <mrna_strand>AATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTTGTTTGTTCTTGAAATNGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290483" ref_strand="+" ref_description="SGN-E290483 [cLES-20-P22]">
      <seq>agaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96135" stop="94064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95835" g_stop="95680" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94364" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="577" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E290483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95835" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</genome_strand>
        <mrna_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E284994" ref_strand="+" ref_description="SGN-E284994 [cLER-19-A16]">
      <seq>aaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96128" stop="94064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95828" g_stop="95680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94364" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="570" r_length="359" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E284994" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95828" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</genome_strand>
        <mrna_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E296254" ref_strand="+" ref_description="SGN-E296254 [cLET-24-H4]">
      <seq>ttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaaaccctggttcaatggggaaacaatacttcttgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96168" stop="94066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95868" g_stop="95680" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="251" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94366" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="610" r_length="359" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E296254" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296254" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95868" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCC-AAA-CCTGGTTCAATGGGGAAACAATACTTCTTGGGTCT</genome_strand>
        <mrna_strand>TTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAAACCCTGGTTCAATGGGGAAACAATACTTCTTGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325444" ref_strand="+" ref_description="SGN-E325444 [cTOC-1-J17]">
      <seq>tcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatacttcttgggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96115" stop="94067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95815" g_stop="95680" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="198" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94367" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="554" r_length="356" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E325444" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95815" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTC</genome_strand>
        <mrna_strand>TCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E322621" ref_strand="+" ref_description="SGN-E322621 [cTOB-26-K5]">
      <seq>tcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagaatgggccaaacctggttcaatggggaaacaatacttcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96167" stop="94070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95867" g_stop="95680" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="250" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94370" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="603" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E322621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95867" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGG</genome_strand>
        <mrna_strand>TCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGAATGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E348839" ref_strand="+" ref_description="SGN-E348839 [cTOF-29-P17]">
      <seq>attatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaacctggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgttttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaaccctggttcaatggggaaacaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96126" stop="94076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95826" g_stop="95680" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="209" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94376" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="559" r_length="350" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E348839" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95826" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAA-CTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTG-TTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAA-CCTGGTTCAATGGGGAAACAATACT</genome_strand>
        <mrna_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACCTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCCTGGTTCAATGGGGAAACAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E313128" ref_strand="+" ref_description="SGN-E313128 [cTOA-18-I19]">
      <seq>tcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggagattccaagattgggccaaacctggttcaatggggaaacaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96099" stop="94077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95799" g_stop="95680" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="182" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94377" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="528" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E313128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95799" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94377"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATAC</genome_strand>
        <mrna_strand>TCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294775" ref_strand="+" ref_description="SGN-E294775 [cLET-17-F3]">
      <seq>aaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagctgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96128" stop="94119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95828" g_stop="95680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94419" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="515" r_length="304" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E294775" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95828" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGA</genome_strand>
        <mrna_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCTGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299100" ref_strand="+" ref_description="SGN-E299100 [cLET-42-G18]">
      <seq>aaattatggcaactcaagcattgatcttttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96128" stop="94119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95828" g_stop="95680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94419" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="515" r_length="304" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E299100" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95828" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGA</genome_strand>
        <mrna_strand>AAATTATGGCAACTCAAGCATTGATCTTTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300406" ref_strand="+" ref_description="SGN-E300406 [cLET-45-O1]">
      <seq>aaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96142" stop="94120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95842" g_stop="95680" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="225" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94420" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="528" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E300406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95842" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAG</genome_strand>
        <mrna_strand>AAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726005" ref_strand="+" ref_description="SGN-E726005 [LA10AA10]">
      <seq>caaaaacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgancattacacattgtttgttcttgaaatggcactcatgggctttgctgagcacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96153" stop="94122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95853" g_stop="95680" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="236" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94422" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="537" r_length="301" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E726005" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95853" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGG</genome_strand>
        <mrna_strand>CAAAAACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGANCATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725916" ref_strand="+" ref_description="SGN-E725916 [LA08CH10]">
      <seq>aacaaacaaaaaagagaagaaaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaacctggtgttatcccaccagcaggaacatacaactactgggctgacaattcacatttgtttgttcttgaaatggcactcatgggctttgctgagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96149" stop="94124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95849" g_stop="95680" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="170" r_length="170" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="232" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94424" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="531" r_length="299" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E725916" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95849" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA-TTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACA</genome_strand>
        <mrna_strand>AACAAACAAAAAAGAGAAGAAAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAACCTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATT-CACATTTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266115" ref_strand="+" ref_description="SGN-E266115 [cLEI-6-J3]">
      <seq>tcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatggggcttgctgagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96042" stop="94124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95742" g_stop="95680" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="125" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94424" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="424" r_length="299" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E266115" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95742" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACA</genome_strand>
        <mrna_strand>TCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGGCTTGCTGAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285805" ref_strand="+" ref_description="SGN-E285805 [cLES-5-F13]">
      <seq>ctcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattggttgttcttgaaatggcactcatgggctttgctgagcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96116" stop="94125"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95816" g_stop="95680" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="199" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94425" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="497" r_length="298" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E285805" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95816" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCAC</genome_strand>
        <mrna_strand>CTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGGTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257580" ref_strand="+" ref_description="SGN-E257580 [cLEG-45-M18]">
      <seq>tcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96162" stop="94127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95862" g_stop="95680" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94427" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="541" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E257580" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95862" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGC</genome_strand>
        <mrna_strand>TCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E343431" ref_strand="+" ref_description="SGN-E343431 [cTOF-19-H1]">
      <seq>aaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgcttgttcttgaaatggcactcatgggctttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96157" stop="94128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95857" g_stop="95680" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="178" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="240" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94428" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="535" r_length="295" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E343431" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95857" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAG</genome_strand>
        <mrna_strand>AAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGCTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E725694" ref_strand="+" ref_description="SGN-E725694 [LA05BD12]">
      <seq>aaaaatcatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacattacacattgtttgttcttgaatggcactcatgggcttgctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96130" stop="94128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95830" g_stop="95680" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94428" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="505" r_length="292" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E725694" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95830" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAG</genome_strand>
        <mrna_strand>AAAAATCATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGAC-ATTACACATTGTTTGTTCTTG-AATGGCACTCATGGGC-TTGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286229" ref_strand="+" ref_description="SGN-E286229 [cLES-11-B17]">
      <seq>aaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96152" stop="94130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95852" g_stop="95680" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="235" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94430" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="528" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E286229" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95852" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</genome_strand>
        <mrna_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287365" ref_strand="+" ref_description="SGN-E287365 [cLES-15-O15]">
      <seq>aaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96152" stop="94130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95852" g_stop="95680" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="235" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94430" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="528" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E287365" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95852" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</genome_strand>
        <mrna_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326973" ref_strand="+" ref_description="SGN-E326973 [cTOC-18-E3]">
      <seq>attatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96126" stop="94130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95826" g_stop="95680" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="209" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94430" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="502" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E326973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95826" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</genome_strand>
        <mrna_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294565" ref_strand="+" ref_description="SGN-E294565 [cLET-22-B1]">
      <seq>agaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaagagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96135" stop="94131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95835" g_stop="95680" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94431" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="510" r_length="292" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E294565" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95835" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCT</genome_strand>
        <mrna_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAAGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277484" ref_strand="+" ref_description="SGN-E277484 [cLER-3-K10]">
      <seq>aaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggctttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96128" stop="94132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95828" g_stop="95680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="211" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94432" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="502" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E277484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95828" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGC</genome_strand>
        <mrna_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E287861" ref_strand="+" ref_description="SGN-E287861 [cLES-19-K11]">
      <seq>aaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96152" stop="94136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95852" g_stop="95680" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="235" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94436" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="522" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E287861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95852" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCT</genome_strand>
        <mrna_strand>AAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E293884" ref_strand="+" ref_description="SGN-E293884 [cLET-13-I11]">
      <seq>aaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="94136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="222" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94436" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="509" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E293884" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCT</genome_strand>
        <mrna_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E285657" ref_strand="+" ref_description="SGN-E285657 [cLES-5-H7]">
      <seq>aaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacangaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="94137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="222" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94437" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="508" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E285657" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGC</genome_strand>
        <mrna_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACANGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E294668" ref_strand="+" ref_description="SGN-E294668 [cLET-22-J11]">
      <seq>aaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattgtttgttcttgaaatggcactcatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="94137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="222" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94437" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="508" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E294668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGC</genome_strand>
        <mrna_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E328759" ref_strand="+" ref_description="SGN-E328759 [cTOC-23-P13]">
      <seq>agaagagaaattatggcaactttagcattgatctctgtatcatcaattagcacttctgctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacattggttgttcttgaaatggcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96135" stop="94142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95835" g_stop="95680" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="218" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94442" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="499" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E328759" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95835" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCA</genome_strand>
        <mrna_strand>AGAAGAGAAATTATGGCAACTTTAGCATTGATCTCTGTATCATCAATTAGCACTTCTGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGGTTGTTCTTGAAATGGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E299031" ref_strand="+" ref_description="SGN-E299031 [cLET-42-H10]">
      <seq>ttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagcttcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96226" stop="94165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95926" g_stop="95680" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="309" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94465" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="567" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E299031" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299031" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95926" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATT</genome_strand>
        <mrna_strand>TTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTTCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E277487" ref_strand="+" ref_description="SGN-E277487 [cLER-3-K16]">
      <seq>aagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96138" stop="94167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95838" g_stop="95680" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="221" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94467" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="477" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E277487" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95838" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</genome_strand>
        <mrna_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E300611" ref_strand="+" ref_description="SGN-E300611 [cLET-45-D1]">
      <seq>agaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96130" stop="94167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95830" g_stop="95680" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="213" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94467" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="469" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E300611" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95830" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</genome_strand>
        <mrna_strand>AGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E323948" ref_strand="+" ref_description="SGN-E323948 [cTOC-3-I2]">
      <seq>attatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacaactactgggctgacaattacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96126" stop="94167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95826" g_stop="95680" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="209" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94467" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="465" r_length="256" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E323948" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95826" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</genome_strand>
        <mrna_strand>ATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E726084" ref_strand="+" ref_description="SGN-E726084 [LA10BB01]">
      <seq>aaaaaacaaaaacagacataatagagaagaaaaattatggcatctcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgaaagggctacttacactccaccagtcaagcatggagcaaataggcaactctgctttgcatccaaacaaagcctttcatacttgcatggaagtcttcccggtgactttggatttgatcccttgcgactctcggaccctgtaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggccggttcgccatgttaggagctgcaggggcaatatcaccagagatacttggaaaagctgttctcataccacaagagacagcacttgcatggttccaaactggtgttatcccaccagcaggaacatacgactactgagctgacaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96159" stop="94171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95859" g_stop="95680" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="242" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94471" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="494" r_length="252" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E726084" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95859" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTA</genome_strand>
        <mrna_strand>AAAAAACAAAAACAGACATAATAGAGAAGAAAAATTATGGCATCTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGAAAGGGCTACTTACACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CATGGAGCAAATAGGCAACTCTGCTTTGCATCCAAACAAAGCCTTTCATACTTGCATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGATTTGATCCCTTGCGACTCTCGGACCCTGTAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGCCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATATCACCAGAGATACTTGGAAAAGCTGTTCTCATACCACAAGAGACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACGACTACTGAGCTGACAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266624" ref_strand="+" ref_description="SGN-E266624 [cLEI-5-M5]">
      <seq>taatctattcttgtggagctaagtgtttatattatacttcttctcaaaaaaacaaaaacaaacaaagaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcaactgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttctttagctgtaagggctgcttccactccaccagtcaaacaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatactcggatggaagtcttcccggtgactatggttttgatcccttgggactctcggaccctgaaggcacaagaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctagcagggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96205" stop="94230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95905" g_stop="95680" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="288" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94530" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="481" r_length="193" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E266624" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95905" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCA</genome_strand>
        <mrna_strand>TAATCTATTCTTGTGGAGCTAAGTGTTTATATTATACTTCTTCTCAAAAAAACAAAAACAAACAAAGAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAACTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTAGCTGTAAGGGCTGCTTCCACTCCACCAGTCAAA.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTCGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTATGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAAGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTAGCAGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290244" ref_strand="+" ref_description="SGN-E290244 [cLET-5-D7]">
      <seq>atattattcttcttctcacaaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgattgcactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttaccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggacggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcacttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96177" stop="94230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95877" g_stop="95680" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="260" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94530" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="453" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E290244" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95877" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCA</genome_strand>
        <mrna_strand>ATATTATTCTTCTTCTCACAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGATTGCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTACCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGACGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264562" ref_strand="+" ref_description="SGN-E264562 [cLEG-67-P11]">
      <seq>aaaaacaaaaacaaacaaaaaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggtcatcaatggtcggttcgccatgttaggagctgcaggggcaatagcaccagagattcttggaaaagctggtctcatcccacaagaaacagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96158" stop="94234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95858" g_stop="95680" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="241" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94534" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="430" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E264562" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95858" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACT</genome_strand>
        <mrna_strand>AAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E735781" ref_strand="+" ref_description="SGN-E735781 [LC03AA02]">
      <seq>ccccttataaagtatggcaactcaagcattgatctcttcatcctcctttagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctacttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccggtgactttggttttgatcccttgggactctcggaccctgaaggcacaggaggtttcatcgagccgaaatggctagcatatggcgaggacatcaatggtcggctcgccatgttaggagctgcaggggcaataccaccacagattcttggaaaagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96130" stop="94259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95828" g_stop="95680" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="157" r_length="149" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="219" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94559" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="383" r_length="164" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E735781" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95828" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTG</genome_strand>
        <mrna_strand>AAAGTATGGCAACTCAAGCATTGATCTCTTCATCCTCCTTTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTACTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGACATCAATGGTCGGCTCGCCATGTTAGGAGCTGCAGGGGCAATACCACCACAGATTCTTGGAAAAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E324914" ref_strand="+" ref_description="SGN-E324914 [cTOC-11-P4]">
      <seq>agcattgatctcttcatcatcaattagcacttgagctgaggctgcatgacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtctttccggtgactttggttttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96112" stop="94397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95812" g_stop="95680" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="195" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94697" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="221" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E324914" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95812" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGTTTTGATC</genome_strand>
        <mrna_strand>AGCATTGATCTCTTCATCATCAATTAGCACTTGAGCTGAGGCTGCATGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCCGGTGACTTTGGTTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E216595" ref_strand="-" ref_description="SGN-E216595 [cLEL-1-O23](-)">
      <seq>ggtccccttatttgccaccttttgtatttaatttattcttgtggagctaagtgtttatattattcttcttctcaaaaaaacaaaaacaaacaaaaaagagaagagaaattatggcatctcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgctttcactccaccagtcaagcaaggagcaaataggcaactttggtttgcattcaaacaaagtctttcatacttggatggaagtcttcccggtgactttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96232" stop="94404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95933" g_stop="95680" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="316" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="94722" g_stop="94704" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="335" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E216595" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216595" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="95933" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
          <exon e_start="94722" e_stop="94704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAGGTAAGATCTATGAGAATTGGTGTGACTTATAATAGCTCTTTCAATAGCCTTGTCGAGTTTATGTTTTGTACACTGACATAAAAGATAAAAATCGACTAGCAACAAATCTAGGTAACACTCAATATTAAGCCTGATATAGTAACCTAGAAAATTGCACATATAGTTTAACATGGTGCATATGTACAATAATCGACAAGAGTTTATGTTTCGTGCATTGACAGTGTAAAGAAGGTTAAGTTGATTTACAACAATTTGTAGGTCAAACCTAATATAGTATCCTGGAAATGGATTTATATCTTGCTACAATCAATTGAATTGCACACATAGTACATGGTGCACATAAATGGTGTAATTGACAAGAATTTATGTTCTATGCACTAACAGTGTAAAGACAGTTAAATTGATTTATAACAAATATAGGTCGCGAATCAACCCTAATATAGTATAAAAACTCATGCTGCACATATAAGGTAATCGACAAGAGTCTATTTTATGCACTTACATTGCACAGATGATATATAACTTGAGTGAACTTACTAAATGATTGTTTGCTGATCCACAGTCTTCCCGGTGACTTTGGT</genome_strand>
        <mrna_strand>GGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCATCTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTTCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTTTGGTTTGCATTCAAACAAAGTCTTTCATACTTGGATGGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCCCGGTGACTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E290721" ref_strand="+" ref_description="SGN-E290721 [cLET-10-M12]">
      <seq>aaagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcatctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtcttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96139" stop="94985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95839" g_stop="95680" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="222" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E290721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>222</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95839" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG</genome_strand>
        <mrna_strand>AAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCATCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E325895" ref_strand="+" ref_description="SGN-E325895 [cTOC-12-I1]">
      <seq>gaagcattgatctcttcatcatcaattagcacttgagctgaagctgcaagacaaattattggatcaagaatttcacaatctgttactagaaaagcttcttttgttgtaagggctgcttccactccaccagtcaagcaaggagcaaataggcaactctggtttgcatccaaacaaagcctttcatacttggatggaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96113" stop="94985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95814" g_stop="95680" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95346" g_stop="95285" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="197" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E325895" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>197</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95814" e_stop="95680"/>
          <exon e_start="95346" e_stop="95285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAGGTAATTTTCTATACTCGGGGTCGTTTCGTTCAAAACAAGGATATACTGAAATCTATGCTACTCGGACGCTTTAAAGATAATGTGTATACTTATTGGAATCCTCCAGAAATACACTATTTTTTGAAGGATTCGATAAAAGTCATCTACATTCTTTAAGTGTCTGAGCAAGATATCCGTGAACCATAAGTTAATTTTGAATTTTGTGTGCAAGTGTGAGTTGTTGTTACCTTAGTTGCTCGGACTCTTTAAAAGAATTACAAAAATTGTATAGAATAATTGATGAAAACTTTAAAATAATACACAAGTACTCATACACTTGATTCTATTTTACAGCAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG</genome_strand>
        <mrna_strand>GAAGCATTGATCTCTTCATCATCAATTAGCACTTGAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG.............................................................................................................................................................................................................................................................................................................................................CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286199" ref_strand="+" ref_description="SGN-E286199 [cLES-11-K7]">
      <seq>aagagaagagaaattatggcaactcaagcattgatctcttcatcatcaattagcacttcagctgaagctgcaagacaagttattgggtcaagaatttcacaatctgttactagaaaagctgcttttgctgtaagggctgcttccactccaccagtcaagcaaggagcaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="96138" stop="95380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95838" g_stop="95680" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E286199" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>159</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95838" e_stop="95680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG</genome_strand>
        <mrna_strand>AAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAGTTATTGGGTCAAGAATTTCACAATCTGTTACTAGAAAAGCTGCTTTTGCTGTAAGGGCTGCTTCCACTCCACCAGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E367087" ref_strand="+" ref_description="SGN-E367087 [cLPT-5-G2]">
      <seq>ctgaagcacgggagaactccggcggaacgcctttcccgccgatggatgagcagcggcagtcatagcaaaacaacggtgatgagcttcggtgacggaagccacggagctttgggccttccgtcgtccatcattggtatgggatccgacgcttacgagcctactcctatacccggtctcccgcctgacgtcgttaccgtcgccgccggtcacttccactccctcgccgttacttctgagggacatgtttgggcttggggacgtaataatgaaggccagcttggccgtgatcccctttctcccagagaaacgtggaatgaaccaaaaagagtagaaggactacataaagtacgagttcaaaccgcatttgcatcaggtgtcatttctgccgccataggagatgatggatctctatgggtttggggaagttctaagcgtgggcagcttggtcttggcaagggaatcaccaacactgcattaccttcgaaaattgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="97250" stop="99951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97550" g_stop="97851" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97852" i_stop="99459" i_length="1608">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99460" g_stop="99651" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="494" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E367087" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97550" e_stop="97851"/>
          <exon e_start="99460" e_stop="99651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCACGGGAGAACTCCGGCGGGTCGCCTTCCCCGCCGATGGATGAGCAGCGGCAGTCATAGCAAAACAACGGTGATGAGCTTCGGTGACGGAAGCCACGGAGCTTTGGGCCTTCCGTCATCCATCATTGGTATGGGATCCGACGCTTACGAGCCTACTCCTATACCCGGTCTCCCGCCTGACGTCGTTTCCGTCGCCGCCGGTCACTTCCATTCTCTCGCCGTTACTTCTGAGGGACATGTTTGGGCTTGGGGACGTAACAATGAAGGCCAGCTTGGCCGTGATCCCCTTTCTCCCAGGTGAGTTAATGATCAAAAACGCACGGTATCCGATTTTTCGAGTTTTATATCTGAATTATTAGATATTCAAGTTTCCTAATCAAACTATCACTGACTATTTATCAAAACACACTATTATTTTCCCGGCGTGAAATATCACCATTATTCAGGCAGGAAAAAAAGGAAAGAAACAGTTGTTAATAGTTAATATAAGAAATTCCGATACAAAAAAGTTTCGGTATGAAACTTGAAAAATTGTTTGGAATACTTTAGTTGTGTTTTTAACCTTACATGTTTGTATATGTATGTCCACTGATTGAACAGGCAAAAACTTGTAACTTACTTATCAGTAACTGTATTGAATTGTGGCTTGATATTGTGTAAATTGACAGTGTTTTATGTGTCATATGCTTGCTTTCTATGTCTGTTAGTAGTACAAGTTGGAGAAAATTGTGTATTTCATTGTATTCGTTAAATGGAATGTGCTTCAATCTCGAGTTAGTAAGAAGTCTGCTGTATGTGGAATCCTCTGTATCTATTCAGCTTTATTCGATGCGTGTGCTCACAAGTTTGGATTGAGAAGGATTCATTATAGTTAAGCAATTATTATGTTGATGTAATCCTCTTCGAAGAAAGTAGCTTTCAGATTAAATCTGGCAATTTCGTGTTTATGACCTTGCGAGGAACTGTAAAGAGGTTGTTTGAGCTGAAGATTCATATATCTGATGCAGTCATGCCATTGCTTGTATATATGCTCTTTTAGTTCACATTCATGTTTCCACCCTCATTGATAAGGAAATGTAATAAGTAAACTGATTTCAACATAAGCGAGTCAAGTGTGCGTGCAAATGTAACAGATGAAAGAAAGCTCTGGAAGAAGACTATACCTTGAGGCCATTAATTTGCTTTTGCTTCTTGAGTAGACTGGAGAGCTCTGGTGGTTTGTTGTTTCTTATATAAATGATTAACATTCCAAGAAAAGCTTAATCTGGCCAAAGCATGATCCTCGCAATCTGATGTATGAAAAGCATTAAGTTCTGCCAACAGAACATTGTAACAGTAGTAGACAAGTTGTTTGGTCAACCACACAACCTCAGCTTAGTTCCATAGTTTAACAGTAGCTGTAAAGAATGTTGCCATGATAATGCCGAGTGCCGACTGTAACAGATTTCTTTACTGCTGTGAGAAAAGAGCAATTTCTCTTAGTATTGAAAGTTTCTGTGACATCCTAGTTTACCTCTATTTGTTTGTTTGTATGACTCTAGAAAGGTACTAAAATTTCGGTTTCTAGACTGTGTTAGCCTATGTTGCTCGGACTCTCCAAAATTGTTGTCGCACCCATGTCCGATTCTTCAAATGCACTACTTTTGTAGTATCCGACGTGCACCCATAGACATTTTTGAAGAGTGCAACCCACATAGGTGTTAGCTATCTCTGTGCTAACCTTTTCTTCTCCATATGCTGGATATCCAGATGAAGTGACTATTGTTTTCCAAAGGATCTCATGTATTTCCTTCTCTGTCCTGTTTTCACCCTGTCTTGCTTTTCTTCTTTTACTTAGGGTTGGTTTGGGGTTGTAGGGTGTTTGTATTACTGACATGGAAATCCTTTTTTGTTGAGCTTGTTCAGAGAAACGTGGAATGAACCAAAAAGAGTAGAAGGACTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGCCGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTGGGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTTGAAAATTGAAAC</genome_strand>
        <mrna_strand>CTGAAGCACGGGAGAACTCCGGCGGAACGCCTTTCCCGCCGATGGATGAGCAGCGGCAGTCATAGCAAAACAACGGTGATGAGCTTCGGTGACGGAAGCCACGGAGCTTTGGGCCTTCCGTCGTCCATCATTGGTATGGGATCCGACGCTTACGAGCCTACTCCTATACCCGGTCTCCCGCCTGACGTCGTTACCGTCGCCGCCGGTCACTTCCACTCCCTCGCCGTTACTTCTGAGGGACATGTTTGGGCTTGGGGACGTAATAATGAAGGCCAGCTTGGCCGTGATCCCCTTTCTCCCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAACGTGGAATGAACCAAAAAGAGTAGAAGGACTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGCCGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTGGGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTCGAAAATTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E706409" ref_strand="+" ref_description="SGN-E706409 [FA29DE07]">
      <seq>accaaaaagagtagaaggactacataaagtacgagttcaaaccgcatttgcatcaggtgtcatttctgccgccataggagatgatggatctctatgggtttggggaagttctaagcgtgggcagcttggtcttggcaagggaatcaccaacactgcattacctttgaaaattgaaacactttctggagaagatattgttaaggtctcattaggttggggacatgctcttgcactagctaagaatgggaatttgtttggctggggatactatgcagatggtagaatcggtaagataggaagagagttggagatatctccactggaatcaaatagtattaaacctagatcaagaggagaatcttctgcaattgaagctgctgagaagtcagtcatggaagctatcgagaaggaaaaagatatgcctatcatatgggagcctggttcaattgaggagctacacgagttaaaagttgcagatgtagcttgtggacttgatcactctcttgtcctttgccgtgatgggatgctgtttagtggtggaagcaatgtgtatggccagttaggaagagcgataaaagacttgggaatgcaacccgttgatataaacttccttcctctctctatagcttcgggtcttgggcattctttggcagtttgtaacgatcgttcatcagaaccaacaggaaatgcaacaagtgttgtatcatggggatggaacaaaagttctcaacttgggagggaaggtccagacaacactcctcaggttgttgaagggctgattggcgaatcacctgtttctgtatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="99175" stop="100868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99475" g_stop="99676" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99677" i_stop="99883" i_length="207">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99884" g_stop="100196" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="515" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="100197" i_stop="100277" i_length="81">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="100278" g_stop="100568" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="806" r_length="291" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E706409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>806</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99475" e_stop="99676"/>
          <exon e_start="99884" e_stop="100196"/>
          <exon e_start="100278" e_stop="100568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAAAAGAGTAGAAGGACTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGCCGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTGGGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTTGAAAATTGAAACACTTTCTGGAGAAGATATTGTTAAGGTGGTCATCCAATCATGCTTAAGGTAGAATAAGTTTTACTTGTCAAATAAATAGGAGGAAGAAATGTTACTGGGAACACATAATGATATAATGTGCAACAATAATAACCAAGTTAAGTAGATGGTGAATATTGTTGAACTGTTCAGATTTTTATTTTTATTTTTTTTGGAAGTGTAGGCGTGTTGTCAAATCATTTGGTGTTGGCAGGTCTCATTAGGTTGGGGACATGCTCTTGCACTAGCTAAGAATGGGAATTTGTTTGGCTGGGGATACTATGCAGATGGTAGAATCGGTAAGATAGGAAGAGAGTTGGAGATATCTCCACTGGAATCAAATAGTATTAAACCTAGATCAAGAGGAGAATCTTCTGCAATTGAAGCTGCTGAGAAGTCAGTCATGGAAGCTATCGAGAAGGAAAAAGATATGCCTATCATATGGGAGCCTGGTTCAATTGAGGAGCTACACGAGTTAAAAGTTGCAGATGTAGCTTGTGGACTTGATCACTCTCTTGTCCTTTGCCGTAAGTCACATTTACTGATGTGTAAATACTTGAAATGTACATGAATGTATGTTGATGGTGGTTTATATTTACTTATTTTAGGTGATGGGATGCTGTTTAGTGGTGGAAGCAATGTGTATGGCCAGTTAGGAAGAGCGATAAAAGACTTGGGAATGCAACCCGTTGATATAAACTTCCTTCCTCTCTCTATAGCTTCGGGTCTTGGGCATTCTTTGGCAGTTTGTAACGATCGTTCATCAGAACCAACAGGAAATGCAACAAGTGTTGTATCATGGGGATGGAACAAAAGTTCTCAACTTGGGAGGGAAGGTCCAGACAACACTCCTCAGGTTGTTGAAGGGCTGATTGGCGAATCACCTGTTTCTGTATCAG</genome_strand>
        <mrna_strand>ACCAAAAAGAGTAGAAGGACTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGCCGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTGGGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTTGAAAATTGAAACACTTTCTGGAGAAGATATTGTTAAG...............................................................................................................................................................................................................GTCTCATTAGGTTGGGGACATGCTCTTGCACTAGCTAAGAATGGGAATTTGTTTGGCTGGGGATACTATGCAGATGGTAGAATCGGTAAGATAGGAAGAGAGTTGGAGATATCTCCACTGGAATCAAATAGTATTAAACCTAGATCAAGAGGAGAATCTTCTGCAATTGAAGCTGCTGAGAAGTCAGTCATGGAAGCTATCGAGAAGGAAAAAGATATGCCTATCATATGGGAGCCTGGTTCAATTGAGGAGCTACACGAGTTAAAAGTTGCAGATGTAGCTTGTGGACTTGATCACTCTCTTGTCCTTTGCC.................................................................................GTGATGGGATGCTGTTTAGTGGTGGAAGCAATGTGTATGGCCAGTTAGGAAGAGCGATAAAAGACTTGGGAATGCAACCCGTTGATATAAACTTCCTTCCTCTCTCTATAGCTTCGGGTCTTGGGCATTCTTTGGCAGTTTGTAACGATCGTTCATCAGAACCAACAGGAAATGCAACAAGTGTTGTATCATGGGGATGGAACAAAAGTTCTCAACTTGGGAGGGAAGGTCCAGACAACACTCCTCAGGTTGTTGAAGGGCTGATTGGCGAATCACCTGTTTCTGTATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E326041" ref_strand="+" ref_description="SGN-E326041 [cTOC-16-C13]">
      <seq>aacttcaacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaggcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaagaattagttctttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102578" stop="100609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102278" g_stop="102025" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="291" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="413" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100904" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="667" r_length="254" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E326041" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326041" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102278" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAGTTCTTTATTTCT</genome_strand>
        <mrna_strand>AACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAGTTCTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E288991" ref_strand="+" ref_description="SGN-E288991 [cLES-17-J5]">
      <seq>ccaaaaaaaacaaagagaaaaaatggcactacaacttcaacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaagcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102610" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102310" g_stop="102025" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="323" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="445" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100915" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="688" r_length="243" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E288991" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102310" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAGT</genome_strand>
        <mrna_strand>CCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAAGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E577958" ref_strand="-" ref_description="SGN-E577958 [LE08CA10]">
      <seq>atttccctcttcaagaaacaagaaaaggataacaacaattccccaaaaaaaacaaagagaaaaaatggcnctacaacttcaacatttatcatcatcaacaacaacacctaaattcaacacttttgcttctcaattgctaccaattttcctgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaggcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102652" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102352" g_stop="102025" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="359" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="481" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100916" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="723" r_length="242" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E577958" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577958" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="102352" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCCTCTTCAAGAAACAAGAAAAGGATAACAACAATTCCCCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCAT---CAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAG</genome_strand>
        <mrna_strand>ATTTCCCTCTTCAAGAAACAAGAAAAGGATAACAACAATTCCCCAAAAAAAACAAAGAGAAAAAATGGCNCTACAACTTCAACATTTATCATCATCAACAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCC---------TGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540479" ref_strand="+" ref_description="SGN-E540479 [TUS-60-M10]">
      <seq>cccaaaaaaaacaaagagaaaaaatggcactacaacttcaacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgnaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcacagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaagcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttccttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102611" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102311" g_stop="102025" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="324" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="446" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100916" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="688" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E540479" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102311" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAG</genome_strand>
        <mrna_strand>CCCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GNAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCACAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAAGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E540476" ref_strand="+" ref_description="SGN-E540476 [TUS-60-M10](-)">
      <seq>cccaaattaaacaaagagaaaaaatggcactacaacttcaaacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaggcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102611" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102311" g_stop="102025" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="325" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="447" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100921" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="684" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="699"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E540476" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>683</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102311" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTC-AACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGA</genome_strand>
        <mrna_strand>CCCAAATTAAACAAAGAGAAAAAATGGCACTACAACTTCAAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E727635" ref_strand="+" ref_description="SGN-E727635 [LA15BB06]">
      <seq>cgactacaacttcaacatttatcatcatcaacaacaacacctaaattcaacacttttgcttctcaattgctaccaattttcctgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctataagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaagaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaggcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaagaaaaaaaaaaaaaaaaaaactttggggggggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102583" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102285" g_stop="102025" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="292" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="414" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100921" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="651" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="652" polyA_stop="670"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E727635" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102285" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACTACAACTTCAACATTTATCATCAT---CAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGA</genome_strand>
        <mrna_strand>CGACTACAACTTCAACATTTATCATCATCAACAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCC---------TGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTATAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAA..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E732388" ref_strand="+" ref_description="SGN-E732388 [LB02AB06]">
      <seq>actacaacttcaacatttatcatcatcaacaacaacacctaaattcaacacttttgcttctcaattgctaccaattttcctgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcagacgaggcactcgtttttgtaggatcctatttgtcattcaaagacaaaagatactaatagttgagaatgatttcctaagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102583" stop="100620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102283" g_stop="102025" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="290" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="412" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100921" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="649" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="650" polyA_stop="660"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E732388" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102283" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACAACTTCAACATTTATCATCATCAACAACA---CCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGA</genome_strand>
        <mrna_strand>ACTACAACTTCAACATTTATCATCATCAACAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCC---------TGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266688" ref_strand="+" ref_description="SGN-E266688 [cLEI-5-N19]">
      <seq>caacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgcttctgaagcctatcgcgagggatcctcatacgaggcactcgtttttgtaggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102573" stop="100675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102273" g_stop="102025" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="286" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="408" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="100975" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="591" r_length="183" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E266688" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102273" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="100975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATC</genome_strand>
        <mrna_strand>CAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCATACGAGGCACTCGTTTTTGTAGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266810" ref_strand="+" ref_description="SGN-E266810 [cLEI-7-D5]">
      <seq>caacatttatcatcatcaacaacacctaaattcaacacttttgcttctcaattgctaccaattttccaaaatgttgtgtgtgtctcaaaatttaaaaatggtggcataacaagtctaagattatcatcatcatcatcaagaattaggaaaaaaaggactacatatttgtgtagaatatcagcttcactttcacctcttgatttgactgaagacaacattatccaagtcctagaagatgcaaaggctgagttggcacaactttttgatactacagttgggataacaggaaaagcagaacttgcagaagtggatggaccttatgtgaaacttagactaagtggcaaattttggcatacacgttctactgttgtagcaagacttggtaattacttgaagcaaagaatccctgaaatcttggaggtggatatagaagatgagaaacagttagatgatagccctgcaaacttctgagattcggagtcggagggagttgaagagagctcaaagacactaaaaacgagcattatggctcgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="102573" stop="100729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102273" g_stop="102025" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101577" g_stop="101541" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="286" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.543" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="101362" g_stop="101241" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="408" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="101157" g_stop="101029" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="537" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E266810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102273" e_stop="102025"/>
          <exon e_start="101577" e_stop="101541"/>
          <exon e_start="101362" e_stop="101241"/>
          <exon e_start="101157" e_stop="101029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAGGTATATCATATTTTTAAATTTCTTTTTAATAATCGAGAATATTTATTCCTTATGTATACGGTTCGAAATTCGATGGATAATAAATTTGTTCTCTGACATTATGGGTTTAAGTGGTGGAATGATAAGTGTTTTTTTAATCATTACTTAGAGGTTTCGAGTTTAAGTAAGATGTGAGACTTTTATTTTGAAAATTCAGATTTAGTAGAACCCTAACGAATATAGCAATCGAAAACAAAAATGAAATTTATAGGTTATGTGAATCCACCAACTTTAACCAAGATTTTGCATGTGTTGAAAAATTTAATATAGGACTACAAATGATATATTTCCGAACTCGAATTCATAAAGTTCAAATCTCGAATTCACTTTATGTCAAAACCTACTTAAATCTTGTGTCTGAATTTATCAATAATTCTCATTATTTGTTTTGGTGTTTGGATTCTGCAGTTGGCACAACTTTTTGATACTACAGTTGGGATAACAGGTGATTGACATCTCATCAAATGAATAATGAAAATTAAGTCTTGTTTTTTTTTCTTCCTTTTATGTATTTAACCTAGCGTAATCACACACGTGAGGTCTAGAGAGATCGAGCAATATGAACGCTGATCTTTTCCCTGTCATAAAGAGAGATTATTTCTGATAGACACTCGACTGAACAGGAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCTGTAAGTATATATACTATAAAAATATTACTAGTGTTTATTTCTTTCATTCAACTCTATAACTATTTTTTTTTTCTACTTTTTAGGAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGC</genome_strand>
        <mrna_strand>CAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG..................................................................................................................................................................................GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT...................................................................................GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372297" ref_strand="+" ref_description="SGN-E372297 [TUS-30-B9]">
      <seq>tcgtctccgctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagtctctgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109458" stop="106546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106849" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="424" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="425" polyA_stop="444"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E372297" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372297" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTGAG</genome_strand>
        <mrna_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E229307" ref_strand="+" ref_description="SGN-E229307 [cLEL-4-A17](-)">
      <seq>gattgtgcacaggagaatactctaaaagcctggtgatgtgatacagtgtcgtaaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagtctctggaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109309" stop="106546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109009" g_stop="108916" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107110" g_stop="106851" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="355" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="357" polyA_stop="377"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E229307" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109009" e_stop="108916"/>
          <exon e_start="107110" e_stop="106851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGTGGACAGGAGAATACTCT-AAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTG</genome_strand>
        <mrna_strand>GATTGTGCACAGGAGAATACTCTAAAAGCCTGGTGATGTGATACAGTGTCGTAAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E282620" ref_strand="+" ref_description="SGN-E282620 [cLER-15-K23]">
      <seq>tcgtctccgctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109458" stop="106556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106856" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="417" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E282620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGT</genome_strand>
        <mrna_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E372296" ref_strand="+" ref_description="SGN-E372296 [TUS-30-B9](-)">
      <seq>ttcgtttccgctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactttaaagcctggtgatgtgatacagtgtcgtgaatgtggttattgtattctttacaaaaaaaggactcgcagaatcgtgcagtatgaagctcgttgatttttgaagtcatttggtaaaaacagcaagtgcctgcttttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttttgcgtgtgattttttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagtctttgaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109459" stop="106546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109159" g_stop="109090" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="163" r_length="93" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106864" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="410" r_length="247" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="444"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E372296" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109159" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</genome_strand>
        <mrna_strand>TTCGTTTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTTTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATTGTATTCTTTACAAAAAAAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTTTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTTTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTTTGCGTGTGATTTTTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215204" ref_strand="+" ref_description="SGN-E215204 [cLEL-20-G13](-)">
      <seq>ggcaccaggctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109450" stop="106564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106864" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="409" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="424"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E215204" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</genome_strand>
        <mrna_strand>GGCACCAGGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E215492" ref_strand="+" ref_description="SGN-E215492 [cLEL-20-G13](-)">
      <seq>ggcaccaggctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109450" stop="106564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.899"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106864" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="409" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="424"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E215492" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</genome_strand>
        <mrna_strand>GGCACCAGGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E550889" ref_strand="+" ref_description="SGN-E550889 [TUS-54-D21]">
      <seq>gctcattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109450" stop="106555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109150" g_stop="109090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="154" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106864" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="401" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="427"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E550889" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109150" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</genome_strand>
        <mrna_strand>GCTCATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E688630" ref_strand="+" ref_description="SGN-E688630 [t3_tus_54_D21]">
      <seq>gctcattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaattccttacatagtcttgtttcaagttcgagtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109450" stop="106555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109150" g_stop="109090" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="154" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106864" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="401" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="427"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E688630" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109150" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</genome_strand>
        <mrna_strand>GCTCATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225712" ref_strand="+" ref_description="SGN-E225712 [cLEL-17-B18](-)">
      <seq>ttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattccaatattgtagaaattccttacataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109442" stop="106576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109142" g_stop="109090" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="146" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106876" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="381" r_length="235" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="400"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E225712" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109142" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATA</genome_strand>
        <mrna_strand>TTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTCCAATATTGTAGAAATTCCTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E225317" ref_strand="+" ref_description="SGN-E225317 [cLEL-17-P20](-)">
      <seq>ctaaagcctggtgatgtgatacagtgtcgtaaatgtggttatcgtattctttccaacaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtacaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgttttaacctttctgcgtgtgatttcttcatgatgttagtctatatggcaacttcgccttgaactcagcgtgattgaaatattgtagaaattccttgcataaaacaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109288" stop="106576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108988" g_stop="108916" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="0.94"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107110" g_stop="106876" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="308" r_length="235" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="309" polyA_stop="327"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E225317" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108988" e_stop="108916"/>
          <exon e_start="107110" e_stop="106876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATA</genome_strand>
        <mrna_strand>CTAAAGCCTGGTGATGTGATACAGTGTCGTAAATGTGGTTATCGTATTCTTTCCAACAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTACAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTAACCTTTCTGCGTGTGATTTCTTCATGATGTTAGTCTATATGGCAACTTCGCCTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTGCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E724639" ref_strand="+" ref_description="SGN-E724639 [FC24CH08]">
      <seq>cgtctccgctaattgttgatcatcaatggctcctaaaactgttgaaccattcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcaaaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcagcttcaacttgaactcagcgtgattgaaatattgtagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109457" stop="106587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109157" g_stop="109090" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="0.88"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="161" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106882" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="390" r_length="229" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E724639" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109157" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCT</genome_strand>
        <mrna_strand>CGTCTCCGCTAATTGTTGATCATCAATGGCTCCTAAAACTGTTGAACCATTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAGCTTCAACTTGAACTCAGCGTGATTGAAATATTGTAGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E721563" ref_strand="+" ref_description="SGN-E721563 [FC14BC06]">
      <seq>aattgttgatcatcaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggaaaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcaaaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaattagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtaaaaattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109447" stop="106582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109147" g_stop="109090" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.196" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="151" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="0.98"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106882" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="380" r_length="229" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E721563" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109147" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCT</genome_strand>
        <mrna_strand>AATTGTTGATCATCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAAAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAATTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAAAAATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232178" ref_strand="+" ref_description="SGN-E232178 [cLEL-5-K3](-)">
      <seq>gagttcgtctccgctaattgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagnnattacaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109459" stop="106583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109162" g_stop="109090" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="166" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106888" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="389" r_length="223" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="416"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E232178" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109162" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAA</genome_strand>
        <mrna_strand>GAGTTCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286018" ref_strand="+" ref_description="SGN-E286018 [cLES-13-N4]">
      <seq>tcgtctccgctttttgttgatcaccaatggattctcaacctgttgaaccagtcagctacatctgtggagattgtggacaggagaatactctaaagcctggtgatgtgatacagtgtcgtgaatgtggttatcgtattctttacaagaagaggactcgcagaatcgtgcagtatgaagctcgttgattcttgaagtcatttggtaaaaacagcaagtgcctgctcttatggaagtagatattaaaaacgttagctaactactgttaaaaatcacgcgtttcagcgtggccattgtgtgtttttacctttctgcgtgtgatttcttcatgttgttagtctatatggcaacttcgacttgaactcagcgtgattgaaatattgtagaaaatttctttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109458" stop="106576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109158" g_stop="109090" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.196" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108916" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="162" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107110" g_stop="106888" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="385" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="407"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E286018" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109158" e_stop="109090"/>
          <exon e_start="109008" e_stop="108916"/>
          <exon e_start="107110" e_stop="106888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGGAGTGTTGTTGTTTCTACTGTTCGAAAGATGTGGGAGTGTTGTTGTTTCTATTGTTCTCTTCTCATTTATTTTTATTGTGGCTTCTTCATTACTGTATTCACTATTTCCTTTTCATACTTGATTTTGATATGCTTTATTTTAACTGAAACAACCTCTCTAGCTGCATAAGATAGGGGTAAGGCTGTGTACACACTATCCTCTCCAAACCCCACTTGTTTGCATGGAGTGTTACTGTAATTTTGATATAGCGAAATTTCATGTGGTATTCTTTTTTAAATTAGCATTCCGGGATGGTAGGGGATGGAATTGATGTGCTTCTTTTGAGTTGTAACTATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTTACGTCCTTTAAACTGTTAAAACTATTCCCGGAGGAAGAAAGTGAGCCCATATTTGTTGCTGATGCACTAGTTCCACCAATGGATTGATATCTTCCACGTTAGCGATCCTAAGATGGTTGTTATGCATGTAGTTGTATTCCTTTGTTGTAAATTCAGAGATTCGAAAGCTAAATATACCATTCCCCAGTGCAAGGTTTCTAATACAAGAATCTTAGTAGTAGGAGTTTTACCACAACCCAGAATTTAGACACTTATCTCGAAACATCTTTGTTGCTGTGAGGAATCTGGGCCAACCTACAATGTCTCACTTTCTACAAGTAGTTACTATATTTGTTTTGGTGCAGTCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAA</genome_strand>
        <mrna_strand>TCGTCTCCGCTTTTTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG.................................................................................ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E279343" ref_strand="+" ref_description="SGN-E279343 [cLEL-4-F24](-)">
      <seq>agaaaggtaaaaaccccncaatgccacgcttaaacgcgggatttttaacagtagttagctaacgttttttaatatctacttccctaagagcaggcacttgctgtttttaccaaatgacttcaagaatcaacgagcttcatactgcacgactgcaccaaaacaaatatagtaactacttgtagaaagtgagacattgtaggttggcccagattcctcacagcaacaaagatgtttcgagataagtgtctaaattctgggttgtggtaaaactcctactactaagattcttgtattagaaaccttgcactggggaatggtatatttagctttcgaatctctgaatttacaacaaaggaatacaactacatgcataacaaccatcttaggatcgctaacgtggactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="+" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="106663" stop="107662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106963" g_stop="107369" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="+" ref_id="SGN-E279343" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279343" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106963" e_stop="107369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGTAAAAACACACAATGGCCACGCTGAAACGCGTGATTTTTAACAGTAGTTAGCTAACG-TTTTTAATATCTACTTCCATAAGAGCAGGCACTTGCTGTTTTTACCAAATGACTTCAAGAATCAACGAGCTTCATACTGCACGACTGCACCAAAACAAATATAGTAACTACTTGTAGAAAGTGAGACATTGTAGGTTGGCCCAGATTCCTCACAGCAACAAAGATGTTTCGAGATAAGTGTCTAAATTCTGGGTTGTGGTAAAACTCCTACTACTAAGATTCTTGTATTAGAAACCTTGCACTGGGGAATGGTATATTTAGCTTTCGAATCTCTGAATTTACAACAAAGGAATACAACTACATGCATAACAACCATCTTAGGATCGCTAACGTGGAAGATATC</genome_strand>
        <mrna_strand>AGAAAGGTAAAAACCCCNCAATGCCACGCTTAAACGCGGGATTTTTAACAGTAGTTAGCTAACGTTTTTTAATATCTACTTCCCTAAGAGCAGGCACTTGCTGTTTTTACCAAATGACTTCAAGAATCAACGAGCTTCATACTGCACGACTGCACCAAAACAAATATAGTAACTACTTGTAGAAAGTGAGACATTGTAGGTTGGCCCAGATTCCTCACAGCAACAAAGATGTTTCGAGATAAGTGTCTAAATTCTGGGTTGTGGTAAAACTCCTACTACTAAGATTCTTGTATTAGAAACCTTGCACTGGGGAATGGTATATTTAGCTTTCGAATCTCTGAATTTACAACAAAGGAATACAACTACATGCATAACAACCATCTTAGGATCGCTAACGTGGACTCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E397972" ref_strand="+" ref_description="SGN-E397972 [TUS-37-C21]">
      <seq>attacatttaatgtcgtatctttgttaaagagaagtcttagaaaaaggctcaagcataacctagaattgtcattagaattgcaatgatgagatgtgaacctgtaagaaatcgggaagtcttaggattgtattgttgaacagtttgatggtctttaatcttttactattgtgtttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttgattactagttgtggttgtctgttgattgcaatggaagttaagaaacaagaaattattatttcataaaactgtattcacgtttatttgtatatagcattcaaccatgctgtcgcatatcatgcttgaattagcttttcttttgggcatctttaggtgaatctggtttagaacatatgctttggtttaatctgtgtatgtgcgattagcctaccattttaatggtccatttctccaacaacagtctcattacattctgtttaaagttggaggatatggcatattattggctctgttagcaatataaatcaattaaatgtaattgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108314" stop="107155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108014" g_stop="107455" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E397972" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108014" e_stop="107455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTT</genome_strand>
        <mrna_strand>ATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATATAAATCAATTAAATGTAATTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E242743" ref_strand="+" ref_description="SGN-E242743 [cLED-31-E4]">
      <seq>ttacatttaatgtcgtatctttgttaaagagaagtcttagaaaaaggctcaagcataacctagaattgtcattagaattgcaatgatgagatgtgaacctgtaagaaatcgggaagtcttaggattgtattgttgaacagtttgatggtctttaatcttttactattgtgtttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttgattactagttgtggttgtctgttgattgcaatggaagttaagaaacaagaaattattatttcataaaactgtattcacgtttatttgtatatagcattcaaccatgctgtcgcatatcatgcttgaattagcttttcttttgggcatctttaggtgaatctggtttagaacatatgctttggtttaatctgtgtatgtgcgattagcctaccattttaatggtccatttctccaacaacagtctcattacattctgtttaaagttggaggatatggcatattattggctctgttagcaatagaaatcaattaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108313" stop="107165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108013" g_stop="107465" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E242743" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242743" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108013" e_stop="107465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGT</genome_strand>
        <mrna_strand>TTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232895" ref_strand="+" ref_description="SGN-E232895 [cLED-8-B24]">
      <seq>ttacatttaatgtcgtatctttgttaaagagaagtcttagaaaaaggctcaagcataacctagaattgtcattagaattgcaatgatgagatgtgaacctgtaagaaatcgggaagtcttaggattgtattgttgaacagtttgatggtctttaatcttttactattgtgtttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttgattactagttgtggttgtctgttgattgcaatggaagttaagaaacaagaaattattatttcataaaactgtattcacgtttatttgtatatagcattcaaccatgctgtcgcatatcatgcttgaattagcttttcttttgggcatctttaggtgaatctggtttagaacatatgctttggtttaatctgtgtatgtgcgattagcctaccattttaatggtccatttctccaacaacagtctcattacattctgtttaaagttggaggatatggcatattattggctctgttagcaatagaaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108313" stop="107171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108013" g_stop="107471" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E232895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108013" e_stop="107471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAA</genome_strand>
        <mrna_strand>TTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237880" ref_strand="+" ref_description="SGN-E237880 [cLED-18-J2]">
      <seq>gtcattagaattgcaatgatgagatgtgaacctgtaagaaatcgggaagtcttaggattgtattgttgaacagtttgatggtctttaatcttttactattgtgtttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttgattactagttgtggttgtctgttgattgcaatggaagttaagaaacaagaaattattatttcataaaactgtattcacgtttatttgtatatagcattcaaccatgctgtcgcatatcatgcttgaattagcttttcttttgggcatctttaggtgaatctggtttataacatatgctttggtttaatctgtgtatgtgcgattagcctaccattttaatggtccatttctccaacaacagtctcattacattctgtttaaagttggaggatatggcatattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108246" stop="107195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107946" g_stop="107495" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E237880" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107946" e_stop="107495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATT</genome_strand>
        <mrna_strand>GTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTATAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E231186" ref_strand="+" ref_description="SGN-E231186 [cLED-5-I2]">
      <seq>ttacatttaatgtcgatctttgtaaagagaagtcttagaaaaaggctcaagcataacctagaattgcattagaattgcaatgatgagatgtgaacctgtagaaatcgggaagtcttagattgtattgtgaacagtttgatggtctttaatcttttactattggttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttgattactagttgtggttgtctgttgattgcaatggaagttaagaaacaagaaattattatttcataaaactgtattcacgtttatttgtatatagcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108313" stop="107381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108013" g_stop="107681" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E231186" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108013" e_stop="107681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTC</genome_strand>
        <mrna_strand>TTACATTTAATGTCG-ATCTTTG-TAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTG-CATTAGAATTGCAATGATGAGATGTGAACCTGT-AGAAATCGGGAAGTCTTA-GATTGTATTG-TGAACAGTTTGATGGTCTTTAATCTTTTACTATTG-G-TTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E396103" ref_strand="+" ref_description="SGN-E396103 [TUS-19-I1]">
      <seq>attacatttaatgtcgtatctttgttaaagagaagtcttagaaaaaggctcaagcataacctagaattgtcattagaattgcaatgatgagatgtgaacctgtaagaaatcgggaagtcttaggattgtattgttgaacagtttgatggtctttaatcttttactattgtgtttaggtaatgtttgctaaattgtgaagacaacccatggaacttttcgacaattaaatatcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="108314" stop="107479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108014" g_stop="107779" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E396103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108014" e_stop="107779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGA</genome_strand>
        <mrna_strand>ATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E553722" ref_strand="+" ref_description="SGN-E553722 [cTSC-2-A15]">
      <seq>ngaggaataaaattcatctccacataattgaagaatcaccaaagaaattctcaaaacaaaaaaaacaaaacaaactacttcgggggagatcgtggacacgataatactctaaaggctggtgatgtgatacagtgtcgtgaatgtgaataacgtattctttacaagaagaggactcgcagaagtaattatttttcgtgttatgcttttgttatccttttaatctgagttttgtgtgttaatgtttgcttgattgctgtatttggggtaaattcaaacaaattacttgatttagggatttgggtatgtttgttttcggcgttatgttataagataaactagttgatttgaggttcgagcaagttgacctagatagctgtatttcgattgtgggaaattaagtgtgttgaactgaagatcatgaggttttaggttcggattctacgtgttttgtttccacctgttatgacctaggtggacaatgttatcctgtgcttaaattggtgggtggtagagtggaattagtcaaggtgagcgagtgtgtatcggatattgttattaagaaaacacttttgacattgtaggaaactaccccttttggtattattgtggttcagtttcgacaggggttgtttcttaaggatggagtactaggttaaggcttatggttctgtttgtctaacttggttaggttattcaattgagagtaaaggaagtgttggaatgaattggttgatcttagaaacatatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="109318" stop="108048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109103" g_stop="109090" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="88" r_length="14" r_score="0.786"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.196" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109008" g_stop="108348" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="749" r_length="661" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E553722" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109103" e_stop="109090"/>
          <exon e_start="109008" e_stop="108348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTGTGGAGGTACCTTTTTTTTCATATTTGTACTGTTTTTTTGGTTTAATTTTGGTTTAGCGAGTCATGGAGCTTTTTTTTTTGATGAAGATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGG</genome_strand>
        <mrna_strand>CTACTTCGGGGGAG.................................................................................ATCGTGGACACGATAATACTCTAAAGGCTGGTGATGTGATACAGTGTCGTGAATGTGAATAACGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTACTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAATGAATTGGTTGATCTTAGAAACATATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E541500" ref_strand="+" ref_description="SGN-E541500 [TUS-62-F6](-)">
      <seq>aaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaggttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaattccttttttttttctagtccctagtttttgtcttaattatcattcacatgcctatattttgatggtagtgatgagtttagtcttagaggaataattacttttgacattattcttcaccaccatattttcaaaacaaggggtgaatgagtttttaatttcttatttatggaaattatttgttatgtattatgttgaataaatactttcctatatataggcagtgcaattaaaggaaagatttttctatttctaccctcagagaatttaacttatattatcagtataatttaatttgttatagcaattacttgtcttcaaagtgaattaaaatgttactctatttgtatttaagttattcgatttgatttgatttttctctttttgttagattactcgattattcaattgttgatataagataatgtattatctatctaatgtaaatgaatacttattttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111026" stop="109587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110726" g_stop="109884" g_length="843"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="842" r_length="842" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E541500" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110726" e_stop="109884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGTATTATGTTGAATAAATACTTTCCTATATATAGGCAGTGCAATTAAAGGAAAGATTTTTCTATTTCTACCCTCAGAGAATTTAACTTATATTATCAGTATAATTTAATTTGTTATAGCAATTACTTGTCTTCAAAGTGAATTAAAATGTTACTCTATTTGTATTTAAGTTATTCGATTTGATTTGATTTTTCTCTTTTTGTTAGATTACTCGATTATTCAATTGTTGATATAAGATAATGTATTATCTATCTAATGTAAATGAATACTTATTTTTGAATGAGGATTAAAGGA</genome_strand>
        <mrna_strand>AAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGTATTATGTTGAATAAATACTTTCCTATATATAGGCAGTGCAATTAAAGGAAAGATTTTTCTATTTCTACCCTCAGAGAATTTAACTTATATTATCAGTATAATTTAATTTGTTATAGCAATTACTTGTCTTCAAAGTGAATTAAAATGTTACTCTATTTGTATTTAAGTTATTCGATTTGATTTGATTTTTCTCTTTTTGTTAGATTACTCGATTATTCAATTGTTGATATAAGATAATGTATTATCTATCTAATGTAAATGAATACTTA-TTTTGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E548560" ref_strand="+" ref_description="SGN-E548560 [TUS-62-F6]">
      <seq>taaaaataaaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaggttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaattccttttttttttctagtccctagtttttgtcttaattatcattcacatgcctatattttgatggtagtgatgagtttagtcttagaggaataattacttttgacattattcttcaccaccatattttcaaaacaaggggtgaatgagtttttaatttcttatttatggaaattatttgttatggaattatgttggaataaatactttcctatatataggcagtgcaattaaaggaaaagatttttctatttctaccctcagagaattttacttatattatcagtataatttaatttgttatagcaattacttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111161" stop="109746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110861" g_stop="110046" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="819" r_length="819" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E548560" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110861" e_stop="110046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTAT-GTATTATGTT-GAATAAATACTTTCCTATATATAGGCAGTGCAATTAAAGGAA-AGATTTTTCTATTTCTACCCTCAGAGAATTTAACTTATATTATCAGTATAATTTAATTTGTTATAGCAATTACTTGTCT</genome_strand>
        <mrna_strand>TAAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGGAATTATGTTGGAATAAATACTTTCCTATATATAGGCAGTGCAATTAAAGGAAAAGATTTTTCTATTTCTACCCTCAGAGAATTTTACTTATATTATCAGTATAATTTAATTTGTTATAGCAATTACTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E340738" ref_strand="+" ref_description="SGN-E340738 [cTOF-5-G1]">
      <seq>aaaaataaaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaggttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaattccttttttttttctagtccctagtttttgtcttaattatcattcacatgcctatattttgatggtagtgatgaagtttagtcttagaggaataattacttttgacattattcttcaccaccatattttcaaacaaggggtgaatgagtttttaatttcttatttatggaaattatttgttatgtattatggttgataaatactttcctattataggcagtgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111160" stop="109832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110860" g_stop="110132" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E340738" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110860" e_stop="110132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATG-AGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGTATTATGTTGAATAAATACTTTCCTATATATAGGCAGTGCAATT</genome_strand>
        <mrna_strand>AAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTC-AAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGTATTATGGTTGATAAATACTTTCCTAT-TATAGGCAGTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286740" ref_strand="+" ref_description="SGN-E286740 [cLES-14-N21]">
      <seq>aaaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaggttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaattccttttttttttctagtccctagtttttgtcttaattatcattcacatgcctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111154" stop="110004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110854" g_stop="110304" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="551" r_length="551" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E286740" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110854" e_stop="110304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATA</genome_strand>
        <mrna_strand>AAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E297860" ref_strand="+" ref_description="SGN-E297860 [cLET-38-L22]">
      <seq>aaaaataaaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaggttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaattccttttttttttctagtccctagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111160" stop="110033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110860" g_stop="110333" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E297860" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297860" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110860" e_stop="110333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTT</genome_strand>
        <mrna_strand>AAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E273060" ref_strand="+" ref_description="SGN-E273060 [cLEM-25-L8]">
      <seq>aaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgctaaggttttcaacagaaatcgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaagaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatccatatctctgaaccgaagctagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccatgttgttcatactctttaaaaaaaatactgtcagttgttcattctacactgatagaacaatatttttttttaagattggaacaacgtacgttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaaaggattttttttaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111153" stop="110060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110853" g_stop="110360" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E273060" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110853" e_stop="110360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAAT</genome_strand>
        <mrna_strand>AAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGCTAAGGTTTTCAACAGAAATCGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAAGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCCATATCTCTGAACCGAAGCTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCATGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCTACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTACGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E283278" ref_strand="+" ref_description="SGN-E283278 [cLER-12-C18]">
      <seq>attctaccaattttctttttccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaagattggaacaacgtaagttaaaacttaaaactataacaagtgtattgccaagtttattcacaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111151" stop="110080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110851" g_stop="110380" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E283278" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283278" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110851" e_stop="110380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAA</genome_strand>
        <mrna_strand>ATTCTACCAATTTTCTTTTTCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAAGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E286276" ref_strand="+" ref_description="SGN-E286276 [cLES-11-F4]">
      <seq>aaaattctaccaattttcttttcccctccaacattacaataatggccaatattcttaaattgttaaggttttcaacagaaattgctccacaaaaatttatctctttacctaaaccatgtccaatttctaaaaaattggacaccatcaaagaggaagaagcttatgtatcagttatttcatcttctctcgatagaaaactcgaaagagatcgatatctcggaaccgaagttagctccatcttagcttattagtaagcatatggccttacaaaaactgcctatactattcactccaagaaaaataaaaagcactactatagtcttaaaatccgtgttgttcatactctttaaaaaaaatactgtcagttgttcattcgacactgatagaacaatatttttttttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="111154" stop="110150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110854" g_stop="110450" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E286276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110854" e_stop="110450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAG</genome_strand>
        <mrna_strand>AAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E745425" ref_strand="+" ref_description="SGN-E745425 [GI|47105653]">
      <seq>ggagcgcgtgttgactgaactctttaggtatcaatggcggatcgagagagaaaattgatgagcgaaggtgttttaacttatgcatacatacttctctatatttccttatcgagtggtcagatcttcttcaacaagtgggttttatcatcaaaagaaataaacttcccgtatcctcttgcgctgacgctacttcacatggtcttctcctcagtactgtgttttgtgcttaccaaagttctcaagataatgaaggttgaagaaggaatgactctagacatatacattagctcagtcatcccaattggtgctatgtttgctatgacgctttggcttgggaacacagcttacctttatatttctgtttcatttgctcagatgttgaaagcaatcatgcccgtagctgtcttcatccttggagttgcagctggactcgaaatgatgagctgcagaatgcttctcataatgtctgtaatcagttttggtgtactagtagcttcttatggagaaataaacatcaactgggttggcgtcatctaccaaatgggaggtgttgttggagaagctttaaggcttatatttatggagattctggtaaaacggaagggcctcaagctaaaccccatttctgtcatgtactatgttagcccatgcagcgctctttgccttttagttccatggatctttttggagaaaccaaagatggacgaacaactaacatggagctttcaccctcttgttctaactctaaattgtatatgtacttttgccttgaatctctctgttttcttggtgatctcacatacaagtgccctaacaattcgtgttgctggagttgtcaaagactgggtggttgtactgctgtctgcactactttttgctgatacgaagctgacacttatcaatctttgtggttatgctattgctattgctggtgtagctgcatataacagccacaagctaaagaaggaagctacccgagtaagctcagacgagtctcaagccacttcgtctatacctttagtatcatcttcaacgtcaaatgcgtagatctatctgaagagtagtcttgcagtctattctgaggtcttgcaagtaacggagcagaaaattctgcaaattccagtatgtcttttttttcggggcaagtaggggttggctcactcttaaaattgatgcattattgaaaactacaacacatttgctggtttagtagaagataaagttgaacatggtgatattcaagtcatgaacttgtctatgcgacattctctggttattactgctgcttttgaattcgagacatcggagcacaagaaaaagaaacagctataatgatgtataatatagaggatcccatatatttttgatcgcgtaaaggttgggaaactgacattctttttgttcgatatagacatcgatgaatgctgactgttgatatgttgaaacagattccagatttattagagtgtatagctgttggtggaattgagttcttcttgagacaattttctgttgtaaggttgatcatttttttttgcttgaaatacaatatttgaacagatttaataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C10HBa0155I21-b5ANO/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C10HBa0155I21.2" temp_strand="-" temp_description="C10HBa0155I21.2  AC233124.5 htgs_phase:1 submitted_to_sgn_as:C10HBa0155I21 upload_account_name:manual">
        <position start="134599" stop="127375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134579" g_stop="134445" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134444" i_stop="131105" i_length="3340">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131104" g_stop="130997" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="243" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130996" i_stop="130927" i_length="70">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="130926" g_stop="130892" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="278" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="130891" i_stop="129878" i_length="1014">
            <donor d_prob="0.905" d_score="0.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="129877" g_stop="129765" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="391" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="129764" i_stop="129536" i_length="229">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="129535" g_stop="129274" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="653" r_length="262" r_score="0.996"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="129273" i_stop="129162" i_length="112">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="129161" g_stop="128893" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="922" r_length="269" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="128892" i_stop="128326" i_length="567">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.847" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="128325" g_stop="127682" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="923" r_stop="1565" r_length="643" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1566" polyA_stop="1585"/>
      <MATCH_line gen_id="C10HBa0155I21.2" gen_strand="-" ref_id="SGN-E745425" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1566</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C10HBa0155I21.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134579" e_stop="134445"/>
          <exon e_start="131104" e_stop="130997"/>
          <exon e_start="130926" e_stop="130892"/>
          <exon e_start="129877" e_stop="129765"/>
          <exon e_start="129535" e_stop="129274"/>
          <exon e_start="129161" e_stop="128893"/>
          <exon e_start="128325" e_stop="127682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCGCGTGTTGACTGAACTCTTTAGGTATCAATGGCGGATCGAGAGAGAAAATTGATGAGCGAAGGTGTTTTAACTTATGCATACATACTTCTCTATATTTCCTTATCGAGTGGTCAGATCTTCTTCAACAAGGTACCTAAAAAAAACAATTCAATTTGATTCATGTATTCATTTGTTTCAACTGTTTTTAGCACTATGTTGTATCGTTAGTTGATTGGGTACCTGTGAAATACATTTTGTTGATGGGAGTTTCATCAACTCCCAATTTAAGAAAAAATGAAAAAGATAAAAGGGGATTGAAACAAAAAATGTAAAACATTAAGTTGATTTAATGTGTTCATTTGATTCAATTGTTCTTAGCTTGGGTTATAGGGAGGAGAGACATGAGTGTCGCGGTATGTTGAATGGCTAAGGGTGTTGATCGGAATCTTAGTAGCTCAGTTAGTTGGTTTGCTACCTGAACCTTGTAATCCCCTCCTTATAACTTGAGAAAAATGACAAAATGAAGAAAGGGGATTGAAATAAGGTATATAAAATATTAAATAATGAGTTCATTTGTTTCAATTGTCCTTAGCTTGGGTTATAGAGAGGATAGATATCAATGGCACTATGTTGTACGTCCTCGCGAAAAGTATTAAAATGATTGAGGAGAATCTTAGTAGCTTAGTTGGTTTGCTACCGAAACTTTTACCTTGTTGATGAGAGTTCGATTCCCCACCTTGTAATGCCCTTCCTATATTTTCTTTCCCCTACCCCCAATTTAAGGGGAAAAGAGATGCATGCGATTGAAACAAGGTACATAAAACATTAAATTGACGTGTTCATTTGTTTCAGTTGTCCTTAGCTTGGGTATAGGAGGATGGATATGAGTGTCTGTGCAAAATTATATTAAACTAGCATAAATCATCTAATATTGAATGGATAAGGGGATTGAGGGGAATCTTGGAGCTCAGTTAGTTGGTTGGCTACCTGAACTTTCAACTTATTGGTGAGTGATGATTTCCCACTTTGTAATCACTTCCCTACCCCAAATTAAGAAAGTGAAAAAAAGAAGATAAGGGGATTGAAATAGCCTACTTGAATTAGTTTGAGATGGAGTTGGTTGATTAAAGTGGTTTACTTTAACGATGTCTAATTAACATTGGGTTTACTTTAACGATGTCTAATTAGTATGGTGGTTGCTAGAAATTGAGTAGGTATCCGTTTTCTTATGTCTAAGTGTACCATGTTGGTAGTGAGGTGGGTTAGGTATTGGGCAATTTTCACCTCGTAATCGAGCTTTTGGGATGAGTTAGCGCCAATCTCTATTTCTTTTTCATGGTATCAACCGGAAACTAATTCTCTGTTATTGTGTGTCACAATGTTGGGCTCCATGTTATGTTGTTCACGCTCAAATTGGTAGACCTAAGAGTGCAAAGGGTGTTAAGTGTTATTCAACAACTTTCACCTCATAAACTAGCTTTTGGTTAGGCTCACTCCATGTTGTTGTATGTCTCAATGTTGGGCTCAATGTAGTGGTGTTCACACTCCAATTAAAAGACCTGAGAGTGCGAAGGGGTAAGTGTCTTATGTTGGTTGAGAATTAGTTATTTGTCTTATTATATGATATTAGGCAATCCTCACCTCATAAGCTAGTTTTGGGTTGAGTTGGGTCCAAAATCCATTTTATGACTCTATTACGGTGGATATTTGTAAATTGTAGGATTTAGTGAATAAGGCCATTCGTACACATGAAGCATAAACATTTTTTTAACTTCTTTTTTGTAGTGTTGTGACTTGTGTCTAGCTAGGTTGTCACACCTTGACTATTTCATGGATACTTGTAACCTTCCACCATTACATGTACCGGATAACTTTGTTCACCAAAAATTTGGACCTTAATCCGATGGGAGGAAATCCTCTAACTCTGTTTGAATTTGCTGAGATTCGAAGCATTTTTTCCCATAATCTTCATTAACTGCTAGACCACATTGTTCCAACATGAAGCACAAAGTTAGAATTCAAAATCCAATTTATTCTTTATAGACATTGTGTGAGTGCAATTATATAGTACCTGACTTTCCTTTCCTTTCTTTTCCATCAACAACTTTGGGCTCATGTTACCCAAGTGGAGATTGCGGAAGTCTAGTACTGTCCTATAATTTGTGATTTGATTAGTTTGAGTACTCTATTTGAAATGGTGGGGGTGTTTTATTAGAAGGATTTTTTAAAACGCTCAATGATAAGCATTTCTAGCATTGATCAACGGTCAGCTTTTCTTAGAAGGTTCTCAAGGTGCACCAATGTTTACAAATAGGTTCTTCGTCAAAGGAATATATTTCTGAGTTAATCATGTAAGGAATCATTGGCTGGTTTAATATAATTTATTTGTTTCTTCTTTGCGTATCTAAGATCCAAAGTCATTATTTGGTCACATGCCTAGGATAGTTCATGAATATTTATAGTCTGTTTGGATGGGAGACACCTTGGTTTCTGGGGACTTCATAGACATCTCACTCACTCTTCTTTTGAAGTAAATCTGTAGAAGAGCTCAATGTTCTGCAGTTTTGAGCTTTTGCTCAATTCACCTCTAGTTTGAGTTTGGGGTTTCAAATCCAAATTTTCTTAAAAATACAAATGTGCGTAAACAATTTGGGCCTATGAATTTTAAACCAATATGGCCAAATCCCTCAATTAAAATAACCCCTCAATCTCCAATTTCATTTTGGTTAAAAATTTGTTGGATATTAAGTACACCTTTCATTGGATATTATTAAGACACCGATGCTATCTCCCTTTTCTTTTCGAAAATTTTCTTCTGTAGAAGGTTAAGCTGGGGTAACTTAGTTAAAATTACACACATGCTCTGCTACTATCAATCTTGATCAGATAATTTCATTAAACCTGATCAATCATGTATTAAGTATGCTTCTCCACATTTTCAAGAGGAATCTGTATGTCCTTACAGAAGCCCCTGTAACCTAGATAATTAGGTTTCTGTTCATTCTTCCTTGTGGATAAGCTTACCATAGTGACCAGATTTAAACTCTAGTAACCTAAACCTCCTTCAGAAACAGCCTCTCTCCCTCACCTCTGAGGTAGTGGTAAGGTCCGCGCACACTCTACCCTCCCCAGCCCTCACCATGTGGGACTACACTGGGTATGTTGTTTTTGTTGTTGTTACCGGGACCTTTTTGGTGAGTTGGACGACTGTGAATCAGCCCTTTGCTAATGGCATTGAAAAACCTAAACCATAAAAGAGAACTCAAATATCAGGTTTCTCTAAAGAAGTGGCCACTATGCTTTGGCTGATACTTTGATACTTTTCTTTTTCACCTTTCAATGAATTGAAAATGAGATAAAGATGCTTCATTGTTGAATTTTATCTTGCTTGATTTCTTTTGACTACAGTTCTCAGTTGTTGCTTTAAGAATAGTTCACTTGTTTGACGTTTCTCTGCTCCTTTTTATGTGCAATAATTTGTTCATTGCAGTGGGTTTTATCATCAAAAGAAATAAACTTCCCGTATCCTCTTGCGCTGACGCTACTTCACATGGTCTTCTCCTCAGTACTGTGTTTTGTGCTTACCAAAGTTCTCAAGGTAAGAATTTTTCTCCCTTTTACTGATTGTTTGGGTAACTAGTAATGCTAATTTAGGCATTTCTTTGCAGATAATGAAGGTTGAAGAAGGAATGACTCTAGACATGTGAGTGCATGTGAAAATATGTCATAGCAAGTTTTATATCCAAGAACTCTATTACTCTGTCTATTCCAATTTATGTGGTAGCAATTACTGTTTTGAGAGTCGAAGAGGTTCTTCTTTGACCACGTTTTTCTTTAAAAGTTGGGATTACATTATGACTTCTGGTACTTTATATGTAGTTTCTATATATGTAATTATATTTCTGAAGTCTTGAAGAATCTAATTCCGATTCACACCAAAATTTAAGTACTTTGGCTACTCTGAACCTCGTCACATGAAGTGGAATGAAGGGAGTATCTTTTATAACTTTTCTTCAATAAAGTAGGCTCATTTAGCTAGATTTTGTCCTACCAAAATTTATGTAAATCTCTGTCTTCTGCCATCCGCTTTTCCTCTTTTGGTGCAATCCATATCTTTTCTCCTGCTTTGCCTTGCCCGCCTTGGAAGTTGGATAAGCCAAGACTTGAGTGTTTAGCTGTTTAGTACATCACAAACTCCTCGGCTTATTGGTTAGAGATGTTCACTTTCTTCGAAGAATCATGTCATGCATTGCACAAGTTACAGATATACTTCTCATTAAAATTATATTTTTATTGTCTTCCCTAAAATGATGATAGGAATTTATTGTCCCAACATGTTGCTCCACTAAGAGACAGAGCGCCACATAGTTTCAATCCTCATCCTTACAATTATGCATAATCAGACATCTAGTTAGGCATAAAATGGATTAGTTTGAATAACTTACTGAAATAAGTGTACACTTGCACTGCACAGTTATCAAAACATGTATAAACAAGACAGAGAAAAAAATTAGCATTAATCTTCTTCCTCACAATTAGTATAAACTAGAAACATACCTGAAGTTGCTGGTTCTCTCAATTTTATCACAACTTTTGCATTTGTGCTCAAAATCCTTACAACAGAAGTAGGCACCAGTGTGTTACTGTACTGCTTTTTTCCTTCTCAGCTTTTTTCAATTAGACTTTCTTGAAGACTAACTAAGATTTCAATATGCAGATACATTAGCTCAGTCATCCCAATTGGTGCTATGTTTGCTATGACGCTTTGGCTTGGGAACACAGCTTACCTTTATATTTCTGTTTCATTTGCTCAGATGTTGAAAGCAATCAGTAAGAATTTTTTCTATCGAGTTGTCTTATATTTCTGTAGTTCATAGATGTTAGAGGTATGTAAAACTTCAGTATAGTTTTATGCTGATATATATAAGTGTCAAAGGATGTTTCATGTGTGATGTTTACACTTTAGACGTTGGGCTGGTGGACGTCCTGCTCAAGTACTGTATACTCTTCGTTTGTTTGTGTGAGAATATGATTTCACATTTTTAGGTCTCATCTGCAGTGCCCGTAGCTGTCTTCATCCTTGGAGTTGCAGCTGGACTCGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCTGTAATCAGTTTTGGTGTACTAGTAGCTTCTTATGGAGAAATAAACATCAACTGGGTTGGTGTCATCTACCAAATGGGAGGTGTTGTTGGAGAAGCTTTAAGGCTTATATTTATGGAGATTCTGGTAAAACGGAAGGGCCTCAAGCTAAACCCCATTTCTGTCATGTACTATGTTAGCCCATGCAGGCAAGTACATTTTTTGTCTGAAAGCAGGATGCTTTTTCGATTTTGTTATTATGTTATGCTTTAACATTATAAAAAAGACAATGTAATGGAACTCTCTTGTTACACAATGCAGCGCTCTTTGCCTTTTAGTTCCATGGATCTTTTTGGAGAAACCAAAGATGGACGAACAACTAACATGGAGCTTTCACCCTCTTGTTCTAACTCTAAATTGTATATGTACTTTTGCCTTGAATCTCTCTGTTTTCTTGGTGATCTCACATACAAGTGCCCTAACAATTCGTGTTGCTGGAGTTGTCAAAGACTGGGTGGTTGTACTGCTGTCTGCACTACTTTTTGCTGATACGAAGCTGACACTTATCAATCTTTGTGGTTATGCTATTGGTACTTTTCTGACCCTCATATCTGATGCCAAGAAACATTCTACTTTTAACTGATTTCCAGCCATTTTCCTTGCATTCATTCTACATAGATGTGCTCCTTTGCAAAATACTCATCATCTACTTCTTGTTTTGGCTCATTTTCTGTGCCCGGTAACTGGATAACCCTTTGCTTTGTCTCTATTGATTTGTGTAATTGAACCAATGCTGCATCTAGTCCTCGGGGAACATCTTTCTATATTTTATCGCAACTGCTTTAATTTGTCCAGTGTTGGCACTTTGTGGTAGTGATATAATAGTAACTTCTTCATTAGAAGAGCTAACCTGTGACTAATACAACTGATTAGATATTGTTCTTGATGAATACATTGAGAGGACTAATAATAATAAACACTGCCAAGTGCTTCATGTTGATAGAACACTTTATTTTATGTTTTTATTTTCTCAAGTAAGATTGTTATACTTGGAGAAATCCTAATCTTTTCTCATACTGCATATATGATGATAAATATAAATATTGATGGTACTCTTTCGTGACCGCATAGTAATATAGAAAATATGTTTTCTGCAGCTATTGCTGGTGTAGCTGCATATAACAGCCACAAGCTAAAGAAGGAAGCTACCCGAGTAAGCTCAGACGAGTCTCAAGCCACTTCGTCTATACCTTTAGTATCATCTTCAACGTCAAATGCGTAGATCTATCTGAAGAGTAGTCTTGCAGTCTATTCTGAGGTCTTGCAAGTAACGGAGCAGAAAATTCTGCAAATTCCAGTATGTCTTTTTTTTTCGGGGCAAGTAGGGGTTGGCTCACTCTTAAAATTGATGCATTATTGAAAACTACAACACATTTGCTGGTTTAGTAGAAGATAAAGTTGAACATGGTGATATTCAAGTCATGAACTTGTCTATGCGACATTCTCTGGTTATTACTGCTGCTTTTGAATTCGAGACATCGGAGCACAAGAAAAAGAAACAGCTATAATGATGTATAATATAGAGGATCCCATATATTTTTGATCGCGTAAAGGTTGGGAAACTGACATTCTTTTTGTTCGATATAGACATCGATGAATGCTGACTGTTGATATGTTGAAACAGATTCCAGATTTATTAGAGTGTATAGCTGTTGGTGGAATTGAGTTCTTCTTGAGACAATTTTCTGTTGTAAGGTTGATCATTTTTTTTTGCTTGAAATACAATATTTGAACAGATTTA</genome_strand>
        <mrna_strand>GGAGCGCGTGTTGACTGAACTCTTTAGGTATCAATGGCGGATCGAGAGAGAAAATTGATGAGCGAAGGTGTTTTAACTTATGCATACATACTTCTCTATATTTCCTTATCGAGTGGTCAGATCTTCTTCAACAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTTTTATCATCAAAAGAAATAAACTTCCCGTATCCTCTTGCGCTGACGCTACTTCACATGGTCTTCTCCTCAGTACTGTGTTTTGTGCTTACCAAAGTTCTCAAG......................................................................ATAATGAAGGTTGAAGAAGGAATGACTCTAGACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATTAGCTCAGTCATCCCAATTGGTGCTATGTTTGCTATGACGCTTTGGCTTGGGAACACAGCTTACCTTTATATTTCTGTTTCATTTGCTCAGATGTTGAAAGCAATCA.....................................................................................................................................................................................................................................TGCCCGTAGCTGTCTTCATCCTTGGAGTTGCAGCTGGACTCGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCTGTAATCAGTTTTGGTGTACTAGTAGCTTCTTATGGAGAAATAAACATCAACTGGGTTGGCGTCATCTACCAAATGGGAGGTGTTGTTGGAGAAGCTTTAAGGCTTATATTTATGGAGATTCTGGTAAAACGGAAGGGCCTCAAGCTAAACCCCATTTCTGTCATGTACTATGTTAGCCCATGCAG................................................................................................................CGCTCTTTGCCTTTTAGTTCCATGGATCTTTTTGGAGAAACCAAAGATGGACGAACAACTAACATGGAGCTTTCACCCTCTTGTTCTAACTCTAAATTGTATATGTACTTTTGCCTTGAATCTCTCTGTTTTCTTGGTGATCTCACATACAAGTGCCCTAACAATTCGTGTTGCTGGAGTTGTCAAAGACTGGGTGGTTGTACTGCTGTCTGCACTACTTTTTGCTGATACGAAGCTGACACTTATCAATCTTTGTGGTTATGCTATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTGCTGGTGTAGCTGCATATAACAGCCACAAGCTAAAGAAGGAAGCTACCCGAGTAAGCTCAGACGAGTCTCAAGCCACTTCGTCTATACCTTTAGTATCATCTTCAACGTCAAATGCGTAGATCTATCTGAAGAGTAGTCTTGCAGTCTATTCTGAGGTCTTGCAAGTAACGGAGCAGAAAATTCTGCAAATTCCAGTATGTC-TTTTTTTTCGGGGCAAGTAGGGGTTGGCTCACTCTTAAAATTGATGCATTATTGAAAACTACAACACATTTGCTGGTTTAGTAGAAGATAAAGTTGAACATGGTGATATTCAAGTCATGAACTTGTCTATGCGACATTCTCTGGTTATTACTGCTGCTTTTGAATTCGAGACATCGGAGCACAAGAAAAAGAAACAGCTATAATGATGTATAATATAGAGGATCCCATATATTTTTGATCGCGTAAAGGTTGGGAAACTGACATTCTTTTTGTTCGATATAGACATCGATGAATGCTGACTGTTGATATGTTGAAACAGATTCCAGATTTATTAGAGTGTATAGCTGTTGGTGGAATTGAGTTCTTCTTGAGACAATTTTCTGTTGTAAGGTTGATCATTTTTTTTTGCTTGAAATACAATATTTGAACAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>288</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="128" PGL_stop="928"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="128" e_stop="337"/>
            <exon e_start="415" e_stop="928"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.949" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="128" e_stop="337" e_length="210"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.949">
            <gDNA_intron_boundary i_start="338" i_stop="414" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="415" e_stop="928" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128" stop="337"/>
              <exon start="415" stop="912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556741" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="433" stop="928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319731" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCACTCCTTCAACTCCATTTGACCCCAATTCACCACCTTCGGGCGGGTACTATCTCTCCCCTCCAACTTTCCCTACACCTAGTACCCCCGGTATACCCACATTTTTCCCACCAACTACTCCTATCATCAACCCGGGCATCCCAGGCACCCCCGGTATCTACATACCTCCACCTCTATTCGATCCTAACTCACCACCTTTCTCAATCGA : TTACTGGAGGACTAACCCGGCTTTAATATGGGCCTTGTGTGGCTGGTGGGCAACTATTGGTAGTGCATTTGGTGTAGCTCCTGCTCCGGGGCTCGGATCAAACTTCAACCTCCTACAAGCACTTACAAACACTCGTTCCGATGGTGTTGGTGAACTCTACAGGGAAGGCACAGCTTCTTTACTGAACTCAATGGTGAACAAGAAGTTTCCTTATACTACAAAACAAGTTAGGGAAAATTTTGTTGCAGCACTTAGTTCAAACAAGGCTGCTGCAGCTCAGGCAGCGCGATTTAAGTTAGCAAACGAGGGTAGATTCAAGCGTAGAGCTTGAAATGAAGGCTCGTATCAATAATTCTGATTCTACGTATGGACATTTTCTCATCACTACTTCGTTCATTCGCAATAGTAAATGTATGCAACTAAGGTATCCTAACAGATCAGTAGAGCTTGAACTTTGGTTCATGTTTCAAAAATCACCTTAAAAATCTTGCAAGTATGTTAAGTTTCATTATGA</gDNA_template>
            <first_frame> I  H  S  F  N  S  I  *  P  Q  F  T  T  F  G  R  V  L  S  L  P  S  N  F  P  Y  T  *  Y  P  R  Y  T  H  I  F  P  T  N  Y  S  Y  H  Q  P  G  H  P  R  H  P  R  Y  L  H  T  S  T  S  I  R  S  *  L  T  T  F  L  N  R  :  L  L  E  D  *  P  G  F  N  M  G  L  V  W  L  V  G  N  Y  W  *  C  I  W  C  S  S  C  S  G  A  R  I  K  L  Q  P  P  T  S  T  Y  K  H  S  F  R  W  C  W  *  T  L  Q  G  R  H  S  F  F  T  E  L  N  G  E  Q  E  V  S  L  Y  Y  K  T  S  *  G  K  F  C  C  S  T  *  F  K  Q  G  C  C  S  S  G  S  A  I  *  V  S  K  R  G  *  I  Q  A  *  S  L  K  *  R  L  V  S  I  I  L  I  L  R  M  D  I  F  S  S  L  L  R  S  F  A  I  V  N  V  C  N  *  G  I  L  T  D  Q  *  S  L  N  F  G  S  C  F  K  N  H  L  K  N  L  A  S  M  L  S  F  I  M  </first_frame>
            <second_frame>  F  T  P  S  T  P  F  D  P  N  S  P  P  S  G  G  Y  Y  L  S  P  P  T  F  P  T  P  S  T  P  G  I  P  T  F  F  P  P  T  T  P  I  I  N  P  G  I  P  G  T  P  G  I  Y  I  P  P  P  L  F  D  P  N  S  P  P  F  S  I  D :   Y  W  R  T  N  P  A  L  I  W  A  L  C  G  W  W  A  T  I  G  S  A  F  G  V  A  P  A  P  G  L  G  S  N  F  N  L  L  Q  A  L  T  N  T  R  S  D  G  V  G  E  L  Y  R  E  G  T  A  S  L  L  N  S  M  V  N  K  K  F  P  Y  T  T  K  Q  V  R  E  N  F  V  A  A  L  S  S  N  K  A  A  A  A  Q  A  A  R  F  K  L  A  N  E  G  R  F  K  R  R  A  *  N  E  G  S  Y  Q  *  F  *  F  Y  V  W  T  F  S  H  H  Y  F  V  H  S  Q  *  *  M  Y  A  T  K  V  S  *  Q  I  S  R  A  *  T  L  V  H  V  S  K  I  T  L  K  I  L  Q  V  C  *  V  S  L  * </second_frame>
            <third_frame>   S  L  L  Q  L  H  L  T  P  I  H  H  L  R  A  G  T  I  S  P  L  Q  L  S  L  H  L  V  P  P  V  Y  P  H  F  S  H  Q  L  L  L  S  S  T  R  A  S  Q  A  P  P  V  S  T  Y  L  H  L  Y  S  I  L  T  H  H  L  S  Q  S   : I  T  G  G  L  T  R  L  *  Y  G  P  C  V  A  G  G  Q  L  L  V  V  H  L  V  *  L  L  L  R  G  S  D  Q  T  S  T  S  Y  K  H  L  Q  T  L  V  P  M  V  L  V  N  S  T  G  K  A  Q  L  L  Y  *  T  Q  W  *  T  R  S  F  L  I  L  Q  N  K  L  G  K  I  L  L  Q  H  L  V  Q  T  R  L  L  Q  L  R  Q  R  D  L  S  *  Q  T  R  V  D  S  S  V  E  L  E  M  K  A  R  I  N  N  S  D  S  T  Y  G  H  F  L  I  T  T  S  F  I  R  N  S  K  C  M  Q  L  R  Y  P  N  R  S  V  E  L  E  L  W  F  M  F  Q  K  S  P  *  K  S  C  K  Y  V  K  F  H  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129" stop="337"/>
                    <exon start="415" stop="745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FTPSTPFDPNSPPSGGYYLSPPTFPTPSTPGIPTFFPPTTPIINPGIPGTPGIYIPPPLFDPNSPPFSIDYWRTNPALIWALCGWWATIGSAFGVAPAPGLGSNFNLLQALTNTRSDGVGELYREGTASLLNSMVNKKFPYTTKQVRENFVAALSSNKAAAAQAARFKLANEGRFKRRA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="2111" PGL_stop="1320"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2111" e_stop="1320"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="2111" e_stop="1320" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2111" stop="1320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAAGGGAAAATATTAAAGGAATTTTGTAGGGCTGTTGCTTCTGATATCTTACTTTGAACCATATAATATATAGTCTCTAATTTCAGTTTTTGAATTTTTTTTTTTTATATACTGGCAAATAGGATAAGAATGGTGAATTGGTAACAATATTTACAGCTTAATGACTTTGAACTTATAGAATCTACACAATTGAAGAATTTCAATTTATCTTTATAAAAGTATGTCCAAACAGGAAAAATATAACAGATTCGGGTTAAACGTCACTTTTGGTTCCTCGATTATTGATAAATTCGATTTAACTTTTGATCTCATTGCTTATGAATATTCACGAATTTTTGGAATTGATTATAGGTCCACCTTTAAAATTTTAAAAATCTATTTGTTACTACACATTTTTCATAAATCTTGATACTTGAGGTTTTGATCACTATTTACTCTAGGTAATTCAATTTTCGAACTAATATATACATAATATCAAACTTTTGTATTATCAAAAAAACTTGATATGTTAGAAATGATAATCTATTTTTGATAACGTAGATAAGTAAAATTAAATAGAGGAAATAATGATTTTTTCTTGACTATTACATCAATTTTCAACTTGTTTGAGACTCATTTGAAGGACTTGTAACTTAAGTTCGAGCCATATGCATGCGAACTAAGCTTGGTATTTAAGCGTAAAAGGGTAGAGAGGCGAGCCCATTATCCTCAAGTTTTGAAGGTTGCGGTTAGTTCTAAGAAGTGACTCCAGATGAATTTCTCTATTATAAAAAAAAAAGCAAAAAGAAAA</gDNA_template>
            <first_frame> V  K  G  K  Y  *  R  N  F  V  G  L  L  L  L  I  S  Y  F  E  P  Y  N  I  *  S  L  I  S  V  F  E  F  F  F  F  I  Y  W  Q  I  G  *  E  W  *  I  G  N  N  I  Y  S  L  M  T  L  N  L  *  N  L  H  N  *  R  I  S  I  Y  L  Y  K  S  M  S  K  Q  E  K  Y  N  R  F  G  L  N  V  T  F  G  S  S  I  I  D  K  F  D  L  T  F  D  L  I  A  Y  E  Y  S  R  I  F  G  I  D  Y  R  S  T  F  K  I  L  K  I  Y  L  L  L  H  I  F  H  K  S  *  Y  L  R  F  *  S  L  F  T  L  G  N  S  I  F  E  L  I  Y  T  *  Y  Q  T  F  V  L  S  K  K  L  D  M  L  E  M  I  I  Y  F  *  *  R  R  *  V  K  L  N  R  G  N  N  D  F  F  L  T  I  T  S  I  F  N  L  F  E  T  H  L  K  D  L  *  L  K  F  E  P  Y  A  C  E  L  S  L  V  F  K  R  K  R  V  E  R  R  A  H  Y  P  Q  V  L  K  V  A  V  S  S  K  K  *  L  Q  M  N  F  S  I  I  K  K  K  A  K  R  K </first_frame>
            <second_frame>  L  R  E  N  I  K  G  I  L  *  G  C  C  F  *  Y  L  T  L  N  H  I  I  Y  S  L  *  F  Q  F  L  N  F  F  F  L  Y  T  G  K  *  D  K  N  G  E  L  V  T  I  F  T  A  *  *  L  *  T  Y  R  I  Y  T  I  E  E  F  Q  F  I  F  I  K  V  C  P  N  R  K  N  I  T  D  S  G  *  T  S  L  L  V  P  R  L  L  I  N  S  I  *  L  L  I  S  L  L  M  N  I  H  E  F  L  E  L  I  I  G  P  P  L  K  F  *  K  S  I  C  Y  Y  T  F  F  I  N  L  D  T  *  G  F  D  H  Y  L  L  *  V  I  Q  F  S  N  *  Y  I  H  N  I  K  L  L  Y  Y  Q  K  N  L  I  C  *  K  *  *  S  I  F  D  N  V  D  K  *  N  *  I  E  E  I  M  I  F  S  *  L  L  H  Q  F  S  T  C  L  R  L  I  *  R  T  C  N  L  S  S  S  H  M  H  A  N  *  A  W  Y  L  S  V  K  G  *  R  G  E  P  I  I  L  K  F  *  R  L  R  L  V  L  R  S  D  S  R  *  I  S  L  L  *  K  K  K  Q  K  E   </second_frame>
            <third_frame>   *  G  K  I  L  K  E  F  C  R  A  V  A  S  D  I  L  L  *  T  I  *  Y  I  V  S  N  F  S  F  *  I  F  F  F  Y  I  L  A  N  R  I  R  M  V  N  W  *  Q  Y  L  Q  L  N  D  F  E  L  I  E  S  T  Q  L  K  N  F  N  L  S  L  *  K  Y  V  Q  T  G  K  I  *  Q  I  R  V  K  R  H  F  W  F  L  D  Y  *  *  I  R  F  N  F  *  S  H  C  L  *  I  F  T  N  F  W  N  *  L  *  V  H  L  *  N  F  K  N  L  F  V  T  T  H  F  S  *  I  L  I  L  E  V  L  I  T  I  Y  S  R  *  F  N  F  R  T  N  I  Y  I  I  S  N  F  C  I  I  K  K  T  *  Y  V  R  N  D  N  L  F  L  I  T  *  I  S  K  I  K  *  R  K  *  *  F  F  L  D  Y  Y  I  N  F  Q  L  V  *  D  S  F  E  G  L  V  T  *  V  R  A  I  C  M  R  T  K  L  G  I  *  A  *  K  G  R  E  A  S  P  L  S  S  S  F  E  G  C  G  *  F  *  E  V  T  P  D  E  F  L  Y  Y  K  K  K  S  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1916" stop="1701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RISIYLYKSMSKQEKYNRFGLNVTFGSSIIDKFDLTFDLIAYEYSRIFGIDYRSTFKILKIYLLLHIFHKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="2955" PGL_stop="2131"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2955" e_stop="2777"/>
            <exon e_start="2694" e_stop="2131"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2955" e_stop="2777" e_length="179"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.967">
            <gDNA_intron_boundary i_start="2776" i_stop="2695" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="2694" e_stop="2131" e_length="564"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2955" stop="2777"/>
              <exon start="2694" stop="2131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2954" stop="2777"/>
              <exon start="2694" stop="2300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTATCCTATTCTGTCCATGATGGCACGCAATATTCTAGGAATGCCAATGTCAAAAGCTTCACTAGAGTATGTGTTCAACACTGGTAATAAGGCTCTTGAACCATATCGCAGTTCGCTAAGATCAGATACCTTGCAAGCTTTGATGTGTGCCCAGGATTGGATGCGTGATGAATTTGAAG : ATTCGAAGGCTTCATCAAGCACCGTCACTCTGGCCTTGTGCTATGATGCAAAATAAGAGCAAGTCTTTGGTAAGCTTAGGTTGTCATTCTTTTGCGTTTATCTGTGTATATTAGCACCTACCAAACAGTCCCCCTCTCTCTATCCTTGTGTTAAGATTTTGTAGAAATTAGTTCATTTGCAGATTTTGCTTTTCCAGAGCTCCCATAAATTAGTTCAAGACGAGTTCTTTTGTTCAAGAATCTAACAGCTTATTGCCATCTTTAGCCTCCATCAATTGACTAACTTATCTGTATCTACTTCTCTTTTCTGTTCTGTCCATTCTCGTTTGAGGTTCTTTACGGTATTGATCTGTCAAGGATCATTCCGAATTAGTGTTAACTCATATGATCATTATGGTCTTGGTTTGTTCATCTGAGCCAGATGAAAGAAAAAATTTCGAGGTATTCTTGGATTTTTGCAGCTTTCATGCCCACGCCCCAGCCCTACCGCGATATGGTATTGTCTGCTGTTTAGTATTTCTCAGCCTCTTGAGTTGTGGACCATTACAGCCTAATAATGGTTGA</gDNA_template>
            <first_frame> V  S  Y  S  V  H  D  G  T  Q  Y  S  R  N  A  N  V  K  S  F  T  R  V  C  V  Q  H  W  *  *  G  S  *  T  I  S  Q  F  A  K  I  R  Y  L  A  S  F  D  V  C  P  G  L  D  A  *  *  I  *  R :   F  E  G  F  I  K  H  R  H  S  G  L  V  L  *  C  K  I  R  A  S  L  W  *  A  *  V  V  I  L  L  R  L  S  V  Y  I  S  T  Y  Q  T  V  P  L  S  L  S  L  C  *  D  F  V  E  I  S  S  F  A  D  F  A  F  P  E  L  P  *  I  S  S  R  R  V  L  L  F  K  N  L  T  A  Y  C  H  L  *  P  P  S  I  D  *  L  I  C  I  Y  F  S  F  L  F  C  P  F  S  F  E  V  L  Y  G  I  D  L  S  R  I  I  P  N  *  C  *  L  I  *  S  L  W  S  W  F  V  H  L  S  Q  M  K  E  K  I  S  R  Y  S  W  I  F  A  A  F  M  P  T  P  Q  P  Y  R  D  M  V  L  S  A  V  *  Y  F  S  A  S  *  V  V  D  H  Y  S  L  I  M  V   </first_frame>
            <second_frame>  Y  P  I  L  S  M  M  A  R  N  I  L  G  M  P  M  S  K  A  S  L  E  Y  V  F  N  T  G  N  K  A  L  E  P  Y  R  S  S  L  R  S  D  T  L  Q  A  L  M  C  A  Q  D  W  M  R  D  E  F  E   : D  S  K  A  S  S  S  T  V  T  L  A  L  C  Y  D  A  K  *  E  Q  V  F  G  K  L  R  L  S  F  F  C  V  Y  L  C  I  L  A  P  T  K  Q  S  P  S  L  Y  P  C  V  K  I  L  *  K  L  V  H  L  Q  I  L  L  F  Q  S  S  H  K  L  V  Q  D  E  F  F  C  S  R  I  *  Q  L  I  A  I  F  S  L  H  Q  L  T  N  L  S  V  S  T  S  L  F  C  S  V  H  S  R  L  R  F  F  T  V  L  I  C  Q  G  S  F  R  I  S  V  N  S  Y  D  H  Y  G  L  G  L  F  I  *  A  R  *  K  K  K  F  R  G  I  L  G  F  L  Q  L  S  C  P  R  P  S  P  T  A  I  W  Y  C  L  L  F  S  I  S  Q  P  L  E  L  W  T  I  T  A  *  *  W  L  </second_frame>
            <third_frame>   I  L  F  C  P  *  W  H  A  I  F  *  E  C  Q  C  Q  K  L  H  *  S  M  C  S  T  L  V  I  R  L  L  N  H  I  A  V  R  *  D  Q  I  P  C  K  L  *  C  V  P  R  I  G  C  V  M  N  L  K  :  I  R  R  L  H  Q  A  P  S  L  W  P  C  A  M  M  Q  N  K  S  K  S  L  V  S  L  G  C  H  S  F  A  F  I  C  V  Y  *  H  L  P  N  S  P  P  L  S  I  L  V  L  R  F  C  R  N  *  F  I  C  R  F  C  F  S  R  A  P  I  N  *  F  K  T  S  S  F  V  Q  E  S  N  S  L  L  P  S  L  A  S  I  N  *  L  T  Y  L  Y  L  L  L  F  S  V  L  S  I  L  V  *  G  S  L  R  Y  *  S  V  K  D  H  S  E  L  V  L  T  H  M  I  I  M  V  L  V  C  S  S  E  P  D  E  R  K  N  F  E  V  F  L  D  F  C  S  F  H  A  H  A  P  A  L  P  R  Y  G  I  V  C  C  L  V  F  L  S  L  L  S  C  G  P  L  Q  P  N  N  G  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2954" stop="2777"/>
                    <exon start="2694" stop="2639"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPILSMMARNILGMPMSKASLEYVFNTGNKALEPYRSSLRSDTLQALMCAQDWMRDEFEDSKASSSTVTLALCYDAK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2346" stop="2131"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVKDHSELVLTHMIIMVLVCSSEPDERKNFEVFLDFCSFHAHAPALPRYGIVCCLVFLSLLSCGPLQPNNG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="3676" PGL_stop="3112"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3676" e_stop="3112"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3676" e_stop="3112" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3676" stop="3112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392990" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3676" stop="3380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3675" stop="3228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3675" stop="3250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3675" stop="3380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCGGAAGTGTCTGAATCTTGATAATTCATTTTATTGGAACTCAACTTATATCATGGTTGAAACTGCTTTGGAGTACAAAGACGCATTTCCTCTTTTGCAAGAACAAGATTCTCGGTATGCAATGTGTCCAACTGTGACAGAGTGGGATAGGATAAGTGCCATTGCTAGCTTCCTAAAGCTCTTTGTTGAGGTTTCCAATGTTTTTGCGGGAAGCAAGTATCCTACGGCAAATACATATTTCCCAGATATCTGTGATATTCACTTGCAGTTGATTGAGTGGTGTCAAAACTCAGATGATTTTGTTAATTCTTTGGCTCTAAAGTTGAAAAGCAGATTTGATGAGTACTGGAAAAAATGTAGCTTGGCTTTGGCGATTGCAGCTATCTTAGACCCGAGATTTAAGATGCAATTGGTTAAATATTATTATCCACAAATATACGGTGATAGTGCTCCAGACTGCATTAATATTGTTTCAGATTGTATGAAGGCTCTGTATAATGGCCATGCTATTTATTCACCATTAGCCCCTAATGGTCAAGCTGAAGCATCTCAAGTTGGTGGTGT</gDNA_template>
            <first_frame> P  G  S  V  *  I  L  I  I  H  F  I  G  T  Q  L  I  S  W  L  K  L  L  W  S  T  K  T  H  F  L  F  C  K  N  K  I  L  G  M  Q  C  V  Q  L  *  Q  S  G  I  G  *  V  P  L  L  A  S  *  S  S  L  L  R  F  P  M  F  L  R  E  A  S  I  L  R  Q  I  H  I  S  Q  I  S  V  I  F  T  C  S  *  L  S  G  V  K  T  Q  M  I  L  L  I  L  W  L  *  S  *  K  A  D  L  M  S  T  G  K  N  V  A  W  L  W  R  L  Q  L  S  *  T  R  D  L  R  C  N  W  L  N  I  I  I  H  K  Y  T  V  I  V  L  Q  T  A  L  I  L  F  Q  I  V  *  R  L  C  I  M  A  M  L  F  I  H  H  *  P  L  M  V  K  L  K  H  L  K  L  V  V  </first_frame>
            <second_frame>  P  E  V  S  E  S  *  *  F  I  L  L  E  L  N  L  Y  H  G  *  N  C  F  G  V  Q  R  R  I  S  S  F  A  R  T  R  F  S  V  C  N  V  S  N  C  D  R  V  G  *  D  K  C  H  C  *  L  P  K  A  L  C  *  G  F  Q  C  F  C  G  K  Q  V  S  Y  G  K  Y  I  F  P  R  Y  L  *  Y  S  L  A  V  D  *  V  V  S  K  L  R  *  F  C  *  F  F  G  S  K  V  E  K  Q  I  *  *  V  L  E  K  M  *  L  G  F  G  D  C  S  Y  L  R  P  E  I  *  D  A  I  G  *  I  L  L  S  T  N  I  R  *  *  C  S  R  L  H  *  Y  C  F  R  L  Y  E  G  S  V  *  W  P  C  Y  L  F  T  I  S  P  *  W  S  S  *  S  I  S  S  W  W  C </second_frame>
            <third_frame>   R  K  C  L  N  L  D  N  S  F  Y  W  N  S  T  Y  I  M  V  E  T  A  L  E  Y  K  D  A  F  P  L  L  Q  E  Q  D  S  R  Y  A  M  C  P  T  V  T  E  W  D  R  I  S  A  I  A  S  F  L  K  L  F  V  E  V  S  N  V  F  A  G  S  K  Y  P  T  A  N  T  Y  F  P  D  I  C  D  I  H  L  Q  L  I  E  W  C  Q  N  S  D  D  F  V  N  S  L  A  L  K  L  K  S  R  F  D  E  Y  W  K  K  C  S  L  A  L  A  I  A  A  I  L  D  P  R  F  K  M  Q  L  V  K  Y  Y  Y  P  Q  I  Y  G  D  S  A  P  D  C  I  N  I  V  S  D  C  M  K  A  L  Y  N  G  H  A  I  Y  S  P  L  A  P  N  G  Q  A  E  A  S  Q  V  G  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3674" stop="3114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKCLNLDNSFYWNSTYIMVETALEYKDAFPLLQEQDSRYAMCPTVTEWDRISAIASFLKLFVEVSNVFAGSKYPTANTYFPDICDIHLQLIEWCQNSDDFVNSLALKLKSRFDEYWKKCSLALAIAAILDPRFKMQLVKYYYPQIYGDSAPDCINIVSDCMKALYNGHAIYSPLAPNGQAEASQVGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="7291" PGL_stop="4365"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7291" e_stop="7263"/>
            <exon e_start="4753" e_stop="4365"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.709" e_score="0.966"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.966">
            <gDNA_exon_boundary e_start="7291" e_stop="7263" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.709">
            <gDNA_intron_boundary i_start="7262" i_stop="4754" i_length="2509"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="4753" e_stop="4365" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7291" stop="7263"/>
              <exon start="4753" stop="4365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324655" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAACGCCGGAAAAGTTCTTCAATTCTC : GTATTGCTACAATACTGGAAGCAATGGAAATAGAGGAAGAAGCAGTCATAGTCAATTCTAGTAGGCTAAAATCTGTTGTGTGGAATGACTTTGATAGAGTAAAAAAAGGTGATACTTTTGTGGCTATCTGTAGACACTGTAAAAGGAAACTTAGTGGGTCTAGTACCAGTGGGACTTCACATTTGAGAAATCATTTGATCAGATGTCGTAGGAGATCAAACCATGATATAAGTCAGTTACTGACACGGGGAAAGAAAAAGGAGGGACCTCTTGCCATCTCGAATTTTAGTTTTGATCAAGAGCAGAGAAATGGTGATGCAGTCAGCGTTGTGAGGACTAAGTTTGAACAAGGACACACAAGAGATGGGTTATTCAACAATGGAATTGTT</gDNA_template>
            <first_frame> N  N  A  G  K  V  L  Q  F  S :   Y  C  Y  N  T  G  S  N  G  N  R  G  R  S  S  H  S  Q  F  *  *  A  K  I  C  C  V  E  *  L  *  *  S  K  K  R  *  Y  F  C  G  Y  L  *  T  L  *  K  E  T  *  W  V  *  Y  Q  W  D  F  T  F  E  K  S  F  D  Q  M  S  *  E  I  K  P  *  Y  K  S  V  T  D  T  G  K  E  K  G  G  T  S  C  H  L  E  F  *  F  *  S  R  A  E  K  W  *  C  S  Q  R  C  E  D  *  V  *  T  R  T  H  K  R  W  V  I  Q  Q  W  N  C  </first_frame>
            <second_frame>  T  T  P  E  K  F  F  N  S   : R  I  A  T  I  L  E  A  M  E  I  E  E  E  A  V  I  V  N  S  S  R  L  K  S  V  V  W  N  D  F  D  R  V  K  K  G  D  T  F  V  A  I  C  R  H  C  K  R  K  L  S  G  S  S  T  S  G  T  S  H  L  R  N  H  L  I  R  C  R  R  R  S  N  H  D  I  S  Q  L  L  T  R  G  K  K  K  E  G  P  L  A  I  S  N  F  S  F  D  Q  E  Q  R  N  G  D  A  V  S  V  V  R  T  K  F  E  Q  G  H  T  R  D  G  L  F  N  N  G  I  V </second_frame>
            <third_frame>   Q  R  R  K  S  S  S  I  L  :  V  L  L  Q  Y  W  K  Q  W  K  *  R  K  K  Q  S  *  S  I  L  V  G  *  N  L  L  C  G  M  T  L  I  E  *  K  K  V  I  L  L  W  L  S  V  D  T  V  K  G  N  L  V  G  L  V  P  V  G  L  H  I  *  E  I  I  *  S  D  V  V  G  D  Q  T  M  I  *  V  S  Y  *  H  G  E  R  K  R  R  D  L  L  P  S  R  I  L  V  L  I  K  S  R  E  M  V  M  Q  S  A  L  *  G  L  S  L  N  K  D  T  Q  E  M  G  Y  S  T  M  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7290" stop="7263"/>
                    <exon start="4753" stop="4365"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTPEKFFNSRIATILEAMEIEEEAVIVNSSRLKSVVWNDFDRVKKGDTFVAICRHCKRKLSGSSTSGTSHLRNHLIRCRRRSNHDISQLLTRGKKKEGPLAISNFSFDQEQRNGDAVSVVRTKFEQGHTRDGLFNNGIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="22238" PGL_stop="20739"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22238" e_stop="22169"/>
            <exon e_start="22021" e_stop="21972"/>
            <exon e_start="21864" e_stop="21751"/>
            <exon e_start="21253" e_stop="20739"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22238" e_stop="22169" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.975">
            <gDNA_intron_boundary i_start="22168" i_stop="22022" i_length="147"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="22021" e_stop="21972" e_length="50"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="21971" i_stop="21865" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21864" e_stop="21751" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.979">
            <gDNA_intron_boundary i_start="21750" i_stop="21254" i_length="497"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="21253" e_stop="20739" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22238" stop="22169"/>
              <exon start="22021" stop="21972"/>
              <exon start="21864" stop="21751"/>
              <exon start="21253" stop="20739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344508" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGGGCAGCATTAGATGAGAACGATATTTTGATTTCTCCTGCTGCACCATCAGCAGCTTACAAAATTG : GTGAAAAGAAGAACGATCCGTTGTCAATGTATGCTGGTGATATTATGACT : GTCAATGTGAACTTGGCTGGTCTTCCAGCATTAGTTCTCCCGTGTGGATTTGTTGATAGCAGTTCTGTGGCCCTTCCCGTTGGTGTTCAGATGATTAGTGCTGCATTTGAAGAG : GAGAAATTGCTTAAAGTAGGCCATATCTTTGAGCAGACACTGCAAGGCTGCTCTTTTATTCCTCCTCTAGTTGCTGATGAATTGGGATGCTAGTCGTGAATTCTTGCGCGCAGTTATGTTCCAGTTAATCAATGCAACGATTTCACGCAAAGTGACTGCAAAATAGCGCCATGGTGCAAAGCTCTGTGCTGACAAGAAGACGACAGGTTCGTCTATCTAGTATCAAATGATCCACCAATCCTTCCAGGCTCGTGCCACTGTTTCCAAACGAATCGTTACGTTCAGAAAACTTTCTTGTGCTGGATTTTTTTTTGTAGGATTGGCGTGTAAAGATACGCGCCAATCGAAAATTCATAAGAACTCTCAATATCTGAGATACTTGTAGCTTATTGCAAGCAAATTCTTTTTGTAAATTAGCATGCATCAATTTTGAAAACTTTGATGTATACATTTGTCATCTTTATTTTCTGCAAAGTTGATTTCAAGTTTTTGCCCTTGATGCTCATTTGATGAAA</gDNA_template>
            <first_frame> F  R  A  A  L  D  E  N  D  I  L  I  S  P  A  A  P  S  A  A  Y  K  I   : G  E  K  K  N  D  P  L  S  M  Y  A  G  D  I  M  T  :  V  N  V  N  L  A  G  L  P  A  L  V  L  P  C  G  F  V  D  S  S  S  V  A  L  P  V  G  V  Q  M  I  S  A  A  F  E  E  :  E  K  L  L  K  V  G  H  I  F  E  Q  T  L  Q  G  C  S  F  I  P  P  L  V  A  D  E  L  G  C  *  S  *  I  L  A  R  S  Y  V  P  V  N  Q  C  N  D  F  T  Q  S  D  C  K  I  A  P  W  C  K  A  L  C  *  Q  E  D  D  R  F  V  Y  L  V  S  N  D  P  P  I  L  P  G  S  C  H  C  F  Q  T  N  R  Y  V  Q  K  T  F  L  C  W  I  F  F  C  R  I  G  V  *  R  Y  A  P  I  E  N  S  *  E  L  S  I  S  E  I  L  V  A  Y  C  K  Q  I  L  F  V  N  *  H  A  S  I  L  K  T  L  M  Y  T  F  V  I  F  I  F  C  K  V  D  F  K  F  L  P  L  M  L  I  *  *   </first_frame>
            <second_frame>  S  G  Q  H  *  M  R  T  I  F  *  F  L  L  L  H  H  Q  Q  L  T  K  L  :  V  K  R  R  T  I  R  C  Q  C  M  L  V  I  L  *  L :   S  M  *  T  W  L  V  F  Q  H  *  F  S  R  V  D  L  L  I  A  V  L  W  P  F  P  L  V  F  R  *  L  V  L  H  L  K  R :   R  N  C  L  K  *  A  I  S  L  S  R  H  C  K  A  A  L  L  F  L  L  *  L  L  M  N  W  D  A  S  R  E  F  L  R  A  V  M  F  Q  L  I  N  A  T  I  S  R  K  V  T  A  K  *  R  H  G  A  K  L  C  A  D  K  K  T  T  G  S  S  I  *  Y  Q  M  I  H  Q  S  F  Q  A  R  A  T  V  S  K  R  I  V  T  F  R  K  L  S  C  A  G  F  F  F  V  G  L  A  C  K  D  T  R  Q  S  K  I  H  K  N  S  Q  Y  L  R  Y  L  *  L  I  A  S  K  F  F  L  *  I  S  M  H  Q  F  *  K  L  *  C  I  H  L  S  S  L  F  S  A  K  L  I  S  S  F  C  P  *  C  S  F  D  E  </second_frame>
            <third_frame>   Q  G  S  I  R  *  E  R  Y  F  D  F  S  C  C  T  I  S  S  L  Q  N  W :   *  K  E  E  R  S  V  V  N  V  C  W  *  Y  Y  D   : C  Q  C  E  L  G  W  S  S  S  I  S  S  P  V  W  I  C  *  *  Q  F  C  G  P  S  R  W  C  S  D  D  *  C  C  I  *  R   : G  E  I  A  *  S  R  P  Y  L  *  A  D  T  A  R  L  L  F  Y  S  S  S  S  C  *  *  I  G  M  L  V  V  N  S  C  A  Q  L  C  S  S  *  S  M  Q  R  F  H  A  K  *  L  Q  N  S  A  M  V  Q  S  S  V  L  T  R  R  R  Q  V  R  L  S  S  I  K  *  S  T  N  P  S  R  L  V  P  L  F  P  N  E  S  L  R  S  E  N  F  L  V  L  D  F  F  L  *  D  W  R  V  K  I  R  A  N  R  K  F  I  R  T  L  N  I  *  D  T  C  S  L  L  Q  A  N  S  F  C  K  L  A  C  I  N  F  E  N  F  D  V  Y  I  C  H  L  Y  F  L  Q  S  *  F  Q  V  F  A  L  D  A  H  L  M  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22238" stop="22169"/>
                    <exon start="22021" stop="21972"/>
                    <exon start="21864" stop="21751"/>
                    <exon start="21253" stop="21161"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRAALDENDILISPAAPSAAYKIGEKKNDPLSMYAGDIMTVNVNLAGLPALVLPCGFVDSSSVALPVGVQMISAAFEEEKLLKVGHIFEQTLQGCSFIPPLVADELGC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="27815" PGL_stop="24837"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27815" e_stop="27427"/>
            <exon e_start="25159" e_stop="24837"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27815" e_stop="27427" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27426" i_stop="25160" i_length="2267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25159" e_stop="24837" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27815" stop="27427"/>
              <exon start="25159" stop="25129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27815" stop="27544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27493" stop="27427"/>
              <exon start="25159" stop="24837"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTACGAGCTCTGTTGCTGCTGCTGCTGTGCTGTGCTGTGTGTAGCCGTTTCGAAGTTATTCCCTATGCATTTTGGCCCCCTTCATCTCTTTTCTTCCTCGTATTTCGTGCACCTAGGGAAAACCCCACTTCTTAAACCCTCACAAAAATCTTCAAAACAAAGAAATAGTCTTCACTGTTTGAAAACTCAGTGTCTTTAATGGTAGTACAAGACAAATAAAGAAGAAAGAACAAAGCTTTTACCTTTTTTTTTCTTTTCAAGAAGAGAGAGAGAGTGTGTGTTAAAATCAGTTTGACTGATTAGGGTTTGTTTGGACCAACCTTCAAGTTCTTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAG : GTTAGATAGAGAAGTAGGAGTAGAGCTTGCTTCAGAAGTGTCGACGTGTTCAACTGTTAAACCAGGTTGAATCTCTTCTGTTCCTTGTGTTTTTCCTGGAACATGTGAACTTTTACAAGTACATTGTTCCTCCTTAAGTACGGAATGAAGCCATCGGTCCGCGAAGCATATCAAGCTTTGTATCATATTTTGACAAATACTAGCAATTATTCATAGTGGATGAAGTAATATTTTTTCTTGCATATATAAGCTACTCAGGTTTATATTTTCTGAGTTTTGACCAATCTGTTACCATTCAATGAAAATCTAATGCTCTCAATTTA</gDNA_template>
            <first_frame> L  R  A  L  L  L  L  L  L  C  C  A  V  C  S  R  F  E  V  I  P  Y  A  F  W  P  P  S  S  L  F  F  L  V  F  R  A  P  R  E  N  P  T  S  *  T  L  T  K  I  F  K  T  K  K  *  S  S  L  F  E  N  S  V  S  L  M  V  V  Q  D  K  *  R  R  K  N  K  A  F  T  F  F  F  L  F  K  K  R  E  R  V  C  V  K  I  S  L  T  D  *  G  L  F  G  P  T  F  K  F  L  T  M  A  V  M  L  L  H  F  S  G  R  W  F  L  T  Q  E  R :   L  D  R  E  V  G  V  E  L  A  S  E  V  S  T  C  S  T  V  K  P  G  *  I  S  S  V  P  C  V  F  P  G  T  C  E  L  L  Q  V  H  C  S  S  L  S  T  E  *  S  H  R  S  A  K  H  I  K  L  C  I  I  F  *  Q  I  L  A  I  I  H  S  G  *  S  N  I  F  S  C  I  Y  K  L  L  R  F  I  F  S  E  F  *  P  I  C  Y  H  S  M  K  I  *  C  S  Q  F  </first_frame>
            <second_frame>  Y  E  L  C  C  C  C  C  C  A  V  L  C  V  A  V  S  K  L  F  P  M  H  F  G  P  L  H  L  F  S  S  S  Y  F  V  H  L  G  K  T  P  L  L  K  P  S  Q  K  S  S  K  Q  R  N  S  L  H  C  L  K  T  Q  C  L  *  W  *  Y  K  T  N  K  E  E  R  T  K  L  L  P  F  F  F  F  S  R  R  E  R  E  C  V  L  K  S  V  *  L  I  R  V  C  L  D  Q  P  S  S  S  *  L  W  L  *  C  Y  Y  I  F  L  A  G  G  F  *  L  K  K   : G  *  I  E  K  *  E  *  S  L  L  Q  K  C  R  R  V  Q  L  L  N  Q  V  E  S  L  L  F  L  V  F  F  L  E  H  V  N  F  Y  K  Y  I  V  P  P  *  V  R  N  E  A  I  G  P  R  S  I  S  S  F  V  S  Y  F  D  K  Y  *  Q  L  F  I  V  D  E  V  I  F  F  L  A  Y  I  S  Y  S  G  L  Y  F  L  S  F  D  Q  S  V  T  I  Q  *  K  S  N  A  L  N  L </second_frame>
            <third_frame>   T  S  S  V  A  A  A  A  V  L  C  C  V  *  P  F  R  S  Y  S  L  C  I  L  A  P  F  I  S  F  L  P  R  I  S  C  T  *  G  K  P  H  F  L  N  P  H  K  N  L  Q  N  K  E  I  V  F  T  V  *  K  L  S  V  F  N  G  S  T  R  Q  I  K  K  K  E  Q  S  F  Y  L  F  F  S  F  Q  E  E  R  E  S  V  C  *  N  Q  F  D  *  L  G  F  V  W  T  N  L  Q  V  L  D  Y  G  C  D  V  T  T  F  F  W  Q  V  V  F  N  S  R  K  :  V  R  *  R  S  R  S  R  A  C  F  R  S  V  D  V  F  N  C  *  T  R  L  N  L  F  C  S  L  C  F  S  W  N  M  *  T  F  T  S  T  L  F  L  L  K  Y  G  M  K  P  S  V  R  E  A  Y  Q  A  L  Y  H  I  L  T  N  T  S  N  Y  S  *  W  M  K  *  Y  F  F  L  H  I  *  A  T  Q  V  Y  I  F  *  V  L  T  N  L  L  P  F  N  E  N  L  M  L  S  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27814" stop="27617"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YELCCCCCCAVLCVAVSKLFPMHFGPLHLFSSSYFVHLGKTPLLKPSQKSSKQRNSLHCLKTQCL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27485" e_stop="26755"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27485" e_stop="26755" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27485" stop="26755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACTATGGCTGTGATGTTACTACATTTTTCTGGCAGGTGGTTTTTAACTCAAGAAAGGTATGGCATTGAGCACCCTTTTTCTCATTTTGTAGTAATTTGTGTTAGTTTCTTTCAGTTTTTTGTGCCTGTTGTTTGTTGAGCTTCTGAAAATGGATAGGAACTGGAAAAAAATCATTTCTTGATGTTGTATGGACTTGTTGTGTAACCCCTTTTATTCTTTTGGTGTGTTGTTTTGTTTATTTTGTCAAATGGGAAGTTTGAGTAGGTTCTGTTGGTACTTTGTTGATTACCAGGCTCTGTATATTCTTGTATCTGCTGTATATACTTGAAGCTATGCTCTTGTTGGCTGAAAGATTGAATCTTTTTAACATTTTATTGCTCAGAGCTGTCATTTACATGATGAATAGAACTCCTAGTAGATATATTAGTTTGCTGATATTGTTGTGTTGTTGCTCGGACTCTTTGAAAATGTCAATGGGTGTATTTTGGATTCTCCAAAAGTAGTGTATTTTTTTTGGAGATTCTTACATGGGTGCGGCATCGGTAGTGAAGAGTCTGCGCAACTTGGGTTACTTCTTTCTGTCCTGTTGTGTTCATTTTGTCAGTTTCATCAAGTTCTATTACTGAAGGGGAATTTAAGGAGCTTCTGTTCTAGCGTTTAACATCTGTTTTCGTTTATGTTGTAGCGCTTTTTCCAATTAGAGCTGTCTATTTATCCCTGTATCTGCT</gDNA_template>
            <first_frame> L  T  M  A  V  M  L  L  H  F  S  G  R  W  F  L  T  Q  E  R  Y  G  I  E  H  P  F  S  H  F  V  V  I  C  V  S  F  F  Q  F  F  V  P  V  V  C  *  A  S  E  N  G  *  E  L  E  K  N  H  F  L  M  L  Y  G  L  V  V  *  P  L  L  F  F  W  C  V  V  L  F  I  L  S  N  G  K  F  E  *  V  L  L  V  L  C  *  L  P  G  S  V  Y  S  C  I  C  C  I  Y  L  K  L  C  S  C  W  L  K  D  *  I  F  L  T  F  Y  C  S  E  L  S  F  T  *  *  I  E  L  L  V  D  I  L  V  C  *  Y  C  C  V  V  A  R  T  L  *  K  C  Q  W  V  Y  F  G  F  S  K  S  S  V  F  F  L  E  I  L  T  W  V  R  H  R  *  *  R  V  C  A  T  W  V  T  S  F  C  P  V  V  F  I  L  S  V  S  S  S  S  I  T  E  G  E  F  K  E  L  L  F  *  R  L  T  S  V  F  V  Y  V  V  A  L  F  P  I  R  A  V  Y  L  S  L  Y  L   </first_frame>
            <second_frame>  *  L  W  L  *  C  Y  Y  I  F  L  A  G  G  F  *  L  K  K  G  M  A  L  S  T  L  F  L  I  L  *  *  F  V  L  V  S  F  S  F  L  C  L  L  F  V  E  L  L  K  M  D  R  N  W  K  K  I  I  S  *  C  C  M  D  L  L  C  N  P  F  Y  S  F  G  V  L  F  C  L  F  C  Q  M  G  S  L  S  R  F  C  W  Y  F  V  D  Y  Q  A  L  Y  I  L  V  S  A  V  Y  T  *  S  Y  A  L  V  G  *  K  I  E  S  F  *  H  F  I  A  Q  S  C  H  L  H  D  E  *  N  S  *  *  I  Y  *  F  A  D  I  V  V  L  L  L  G  L  F  E  N  V  N  G  C  I  L  D  S  P  K  V  V  Y  F  F  W  R  F  L  H  G  C  G  I  G  S  E  E  S  A  Q  L  G  L  L  L  S  V  L  L  C  S  F  C  Q  F  H  Q  V  L  L  L  K  G  N  L  R  S  F  C  S  S  V  *  H  L  F  S  F  M  L  *  R  F  F  Q  L  E  L  S  I  Y  P  C  I  C  </second_frame>
            <third_frame>   D  Y  G  C  D  V  T  T  F  F  W  Q  V  V  F  N  S  R  K  V  W  H  *  A  P  F  F  S  F  C  S  N  L  C  *  F  L  S  V  F  C  A  C  C  L  L  S  F  *  K  W  I  G  T  G  K  K  S  F  L  D  V  V  W  T  C  C  V  T  P  F  I  L  L  V  C  C  F  V  Y  F  V  K  W  E  V  *  V  G  S  V  G  T  L  L  I  T  R  L  C  I  F  L  Y  L  L  Y  I  L  E  A  M  L  L  L  A  E  R  L  N  L  F  N  I  L  L  L  R  A  V  I  Y  M  M  N  R  T  P  S  R  Y  I  S  L  L  I  L  L  C  C  C  S  D  S  L  K  M  S  M  G  V  F  W  I  L  Q  K  *  C  I  F  F  G  D  S  Y  M  G  A  A  S  V  V  K  S  L  R  N  L  G  Y  F  F  L  S  C  C  V  H  F  V  S  F  I  K  F  Y  Y  *  R  G  I  *  G  A  S  V  L  A  F  N  I  C  F  R  L  C  C  S  A  F  S  N  *  S  C  L  F  I  P  V  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27222" stop="26980"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGSVGTLLITRLCIFLYLLYILEAMLLLAERLNLFNILLLRAVIYMMNRTPSRYISLLILLCCCSDSLKMSMGVFWILQK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27055" stop="26822"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FADIVVLLLGLFENVNGCILDSPKVVYFFWRFLHGCGIGSEESAQLGLLLSVLLCSFCQFHQVLLLKGNLRSFCSSV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="33047" PGL_stop="30914"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33047" e_stop="32926"/>
            <exon e_start="31947" e_stop="30914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.958" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33047" e_stop="32926" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.958">
            <gDNA_intron_boundary i_start="32925" i_stop="31948" i_length="978"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="31947" e_stop="30914" e_length="1034"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33047" stop="32926"/>
              <exon start="31947" stop="31257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537650" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33046" stop="32926"/>
              <exon start="31947" stop="31653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33022" stop="32926"/>
              <exon start="31947" stop="31211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31939" stop="31549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31926" stop="31007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31901" stop="31463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710711" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31544" stop="30914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTCTTTTGCTCAATCAAAAATCACAATCGAATAAGAACAAAAATTTGATCTTTTGGAATCAAATGCAGTAACAAAGCAAAACCCTAATCCAAATCAAATTCACATTCTTCATTTCTCAG : GTTTAACTATGGCGGACGAGAATGCTGCCAATGGAGATGTTTTTGATGATGCTGTGGAGATCGAAGGAGAGGAAGATTCGGATGCTGCATTGAAAACTGCTCCGCTGACACACAAGATAGCGGCGTTAGAGCAAGAGAATAATCAACTTTTTCGCGAGAATCAAGTGATCAAAGAGAAGATGGAGAAATCTAAGCACTCGATTGAGGAAATCCAGAACGAAAAAGTGGAGTTACAGAAGAAGGCGAAGAAGTTTGAGTCGGACAATAATGCTCTAGGACCGGTAGCTGGCCGAGCAGCAGAGCTCGAGGGTGAACAGTCTCGGCTGCAGCATGATCTCATAACTTCATTGAACGATCTGGAAGAATCGAATTCTGAGCTATCGAAACTGAAGTTGGATCTAGAAGGATTAAAGAGTAGTGATAATGAGAAGAGGGTGAAATTGGAAACCGTTGAGACTGAAAGGAACTTGTTATTGGTGAAACTTAACAAGTTGGAAGTGAGTGAAAAAGATCATCGAGCTGAAGGAGAAGTAAAGGAGAAAGAAATAAGGGGCTTGAAGAATCAACTCGAGGATTTAAAAGCAACTGTGAAGAAGAACGAGGCGTGGAGAAGGGAGAAGGAGGCACTTCATTCGGTGAAAAACGAGTTAGAGAAAAGGGTAATAGAAATGATGAGTAAAGTGACTGAGTTGGAGAAAAAGTTGGAGGAGAAGGAAACGTTGATTACTGAAAGAGGCGTCGACAACAATGTTAATGGCGTTTCAGCTGAGGATAAAGTTAAAGCTCCCGGTGGCAATGTAGACTTACTAATGGCGGCTGCATCTTCAGTTGCTGCAGTTGCTCTGGTAGGTATTTTGTGCTTTCTTCGATTTGCAAGAAAATCATAAACTCAGAGCTTGTTGTTTATCTTGACTTGCTAGTTCCATGAACCATAGGAGTTTTTAGCAACCATTTTTTTCGCCTTCTAAACAAGTTTGTTAGTGTAATCACTTCAAAGAAAGCTTTTTGTATTGCAGTGAAGCACTGAATTCATA</gDNA_template>
            <first_frame> F  F  F  C  S  I  K  N  H  N  R  I  R  T  K  I  *  S  F  G  I  K  C  S  N  K  A  K  P  *  S  K  S  N  S  H  S  S  F  L  R :   F  N  Y  G  G  R  E  C  C  Q  W  R  C  F  *  *  C  C  G  D  R  R  R  G  R  F  G  C  C  I  E  N  C  S  A  D  T  Q  D  S  G  V  R  A  R  E  *  S  T  F  S  R  E  S  S  D  Q  R  E  D  G  E  I  *  A  L  D  *  G  N  P  E  R  K  S  G  V  T  E  E  G  E  E  V  *  V  G  Q  *  C  S  R  T  G  S  W  P  S  S  R  A  R  G  *  T  V  S  A  A  A  *  S  H  N  F  I  E  R  S  G  R  I  E  F  *  A  I  E  T  E  V  G  S  R  R  I  K  E  *  *  *  *  E  E  G  E  I  G  N  R  *  D  *  K  E  L  V  I  G  E  T  *  Q  V  G  S  E  *  K  R  S  S  S  *  R  R  S  K  G  E  R  N  K  G  L  E  E  S  T  R  G  F  K  S  N  C  E  E  E  R  G  V  E  K  G  E  G  G  T  S  F  G  E  K  R  V  R  E  K  G  N  R  N  D  E  *  S  D  *  V  G  E  K  V  G  G  E  G  N  V  D  Y  *  K  R  R  R  Q  Q  C  *  W  R  F  S  *  G  *  S  *  S  S  R  W  Q  C  R  L  T  N  G  G  C  I  F  S  C  C  S  C  S  G  R  Y  F  V  L  S  S  I  C  K  K  I  I  N  S  E  L  V  V  Y  L  D  L  L  V  P  *  T  I  G  V  F  S  N  H  F  F  R  L  L  N  K  F  V  S  V  I  T  S  K  K  A  F  C  I  A  V  K  H  *  I  H  </first_frame>
            <second_frame>  F  S  F  A  Q  S  K  I  T  I  E  *  E  Q  K  F  D  L  L  E  S  N  A  V  T  K  Q  N  P  N  P  N  Q  I  H  I  L  H  F  S   : G  L  T  M  A  D  E  N  A  A  N  G  D  V  F  D  D  A  V  E  I  E  G  E  E  D  S  D  A  A  L  K  T  A  P  L  T  H  K  I  A  A  L  E  Q  E  N  N  Q  L  F  R  E  N  Q  V  I  K  E  K  M  E  K  S  K  H  S  I  E  E  I  Q  N  E  K  V  E  L  Q  K  K  A  K  K  F  E  S  D  N  N  A  L  G  P  V  A  G  R  A  A  E  L  E  G  E  Q  S  R  L  Q  H  D  L  I  T  S  L  N  D  L  E  E  S  N  S  E  L  S  K  L  K  L  D  L  E  G  L  K  S  S  D  N  E  K  R  V  K  L  E  T  V  E  T  E  R  N  L  L  L  V  K  L  N  K  L  E  V  S  E  K  D  H  R  A  E  G  E  V  K  E  K  E  I  R  G  L  K  N  Q  L  E  D  L  K  A  T  V  K  K  N  E  A  W  R  R  E  K  E  A  L  H  S  V  K  N  E  L  E  K  R  V  I  E  M  M  S  K  V  T  E  L  E  K  K  L  E  E  K  E  T  L  I  T  E  R  G  V  D  N  N  V  N  G  V  S  A  E  D  K  V  K  A  P  G  G  N  V  D  L  L  M  A  A  A  S  S  V  A  A  V  A  L  V  G  I  L  C  F  L  R  F  A  R  K  S  *  T  Q  S  L  L  F  I  L  T  C  *  F  H  E  P  *  E  F  L  A  T  I  F  F  A  F  *  T  S  L  L  V  *  S  L  Q  R  K  L  F  V  L  Q  *  S  T  E  F  I </second_frame>
            <third_frame>   F  L  L  L  N  Q  K  S  Q  S  N  K  N  K  N  L  I  F  W  N  Q  M  Q  *  Q  S  K  T  L  I  Q  I  K  F  T  F  F  I  S  Q  :  V  *  L  W  R  T  R  M  L  P  M  E  M  F  L  M  M  L  W  R  S  K  E  R  K  I  R  M  L  H  *  K  L  L  R  *  H  T  R  *  R  R  *  S  K  R  I  I  N  F  F  A  R  I  K  *  S  K  R  R  W  R  N  L  S  T  R  L  R  K  S  R  T  K  K  W  S  Y  R  R  R  R  R  S  L  S  R  T  I  M  L  *  D  R  *  L  A  E  Q  Q  S  S  R  V  N  S  L  G  C  S  M  I  S  *  L  H  *  T  I  W  K  N  R  I  L  S  Y  R  N  *  S  W  I  *  K  D  *  R  V  V  I  M  R  R  G  *  N  W  K  P  L  R  L  K  G  T  C  Y  W  *  N  L  T  S  W  K  *  V  K  K  I  I  E  L  K  E  K  *  R  R  K  K  *  G  A  *  R  I  N  S  R  I  *  K  Q  L  *  R  R  T  R  R  G  E  G  R  R  R  H  F  I  R  *  K  T  S  *  R  K  G  *  *  K  *  *  V  K  *  L  S  W  R  K  S  W  R  R  R  K  R  *  L  L  K  E  A  S  T  T  M  L  M  A  F  Q  L  R  I  K  L  K  L  P  V  A  M  *  T  Y  *  W  R  L  H  L  Q  L  L  Q  L  L  W  *  V  F  C  A  F  F  D  L  Q  E  N  H  K  L  R  A  C  C  L  S  *  L  A  S  S  M  N  H  R  S  F  *  Q  P  F  F  S  P  S  K  Q  V  C  *  C  N  H  F  K  E  S  F  L  Y  C  S  E  A  L  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33010" stop="32926"/>
                    <exon start="31947" stop="31061"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>969</number_coding_nucleotides>
                  <number_encoded_amino_acids>323</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQKFDLLESNAVTKQNPNPNQIHILHFSGLTMADENAANGDVFDDAVEIEGEEDSDAALKTAPLTHKIAALEQENNQLFRENQVIKEKMEKSKHSIEEIQNEKVELQKKAKKFESDNNALGPVAGRAAELEGEQSRLQHDLITSLNDLEESNSELSKLKLDLEGLKSSDNEKRVKLETVETERNLLLVKLNKLEVSEKDHRAEGEVKEKEIRGLKNQLEDLKATVKKNEAWRREKEALHSVKNELEKRVIEMMSKVTELEKKLEEKETLITERGVDNNVNGVSAEDKVKAPGGNVDLLMAAASSVAAVALVGILCFLRFARKS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="42364" PGL_stop="44882"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42364" e_stop="42484"/>
            <exon e_start="42557" e_stop="42673"/>
            <exon e_start="42790" e_stop="42941"/>
            <exon e_start="44081" e_stop="44172"/>
            <exon e_start="44304" e_stop="44882"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.924" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42364" e_stop="42484" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.924" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42485" i_stop="42556" i_length="72"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42557" e_stop="42673" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="42674" i_stop="42789" i_length="116"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42790" e_stop="42941" e_length="152"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.905">
            <gDNA_intron_boundary i_start="42942" i_stop="44080" i_length="1139"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44081" e_stop="44172" e_length="92"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.947">
            <gDNA_intron_boundary i_start="44173" i_stop="44303" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44304" e_stop="44882" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42364" stop="42484"/>
              <exon start="42557" stop="42673"/>
              <exon start="42790" stop="42941"/>
              <exon start="44081" stop="44172"/>
              <exon start="44304" stop="44472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44101" stop="44172"/>
              <exon start="44304" stop="44882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327052" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCATAGGGGCTTTGTGATGATATCTTACTATGACATCCGAGCTGCTCGAACTGCAATGCGTGCTCTACAAAATAAGCCCTTGAGACGAAGAAAGCTCGACATTCATTTTTCCATTCCCAAG : GAAAATCCGTCAGAGAAAGATATTAACCAAGGAACTCTTGTCGTGTTCAACTTGGATCCATCGGTATCCAATGAGGATCTTCGGCAAATCTTTGGAGTGTATGGGGAAGTCAAGGAG : ATTAGAGAAACACCACATAAACGCCATCACAAATTCATCGAATTCTACGATGTCAGAGCAGCTGATGCAGCTCTTAAAGCATTAAATCGTAGTGACATTGCTGGAAAGCGGATAAAACTTGAACCCAGCCGACCTGGTGGAGCCCGTCGAAA : TTTGATGCAGCAACTAACTCAAGAATTGGAACACGATGAAATTCGATCATTTAGGCACTCAGTTGGATCACCGGTAGCCAGCTCTCCTCCAG : GCAGCTGGTCAAACTTCGGCAGTCCAGTTGAACCCAACCCGTTGCGAGGTTATAGTCAATCACCTGGTCTGAGAAATCTCAGCCCTGTAAATGGTAATCTTATGCCAGGGCTGGCCTCTATTCTTCCTGGACACCTTTCAAGTCCGAAGATTGCACCCATTGGTAAAGATCCTGCAAGGGTTGGCCATTTGAATCAGGTAACTTCTAGTCCAAAGTCATCTCAAGGAATGGGTTATCAGCATTCTTTTTCAGTCCCTGAGCAGAAACCGGCTTTAAGCATAGGATCTGTGCCATTTGGTAACTCTAAGGCATCCGGTACTGGAACGCTTTCTGGTCCACAGTTTCTTTGGGGTAGTCCCCCTATTCACTCAGAGCGATCCGACTCTCCTATCTGGCCAGCTTCATCAATGGCACGTCCATTCGCATCAAATGGACAAGGACAGGGCTATCTCCATTCCCGTAGGCAAAGCTCTTTCCTTGGATCACATCACGTGGGGTCTGCTCCATCTGGAAATCCTTTGGATAGGCATTTTGGTTTTTTCCCAGAATCTCCTCAAACATCATATATGAACCCACATG</gDNA_template>
            <first_frame> A  *  G  L  C  D  D  I  L  L  *  H  P  S  C  S  N  C  N  A  C  S  T  K  *  A  L  E  T  K  K  A  R  H  S  F  F  H  S  Q   : G  K  S  V  R  E  R  Y  *  P  R  N  S  C  R  V  Q  L  G  S  I  G  I  Q  *  G  S  S  A  N  L  W  S  V  W  G  S  Q  G   : D  *  R  N  T  T  *  T  P  S  Q  I  H  R  I  L  R  C  Q  S  S  *  C  S  S  *  S  I  K  S  *  *  H  C  W  K  A  D  K  T  *  T  Q  P  T  W  W  S  P  S  K  :  F  D  A  A  T  N  S  R  I  G  T  R  *  N  S  I  I  *  A  L  S  W  I  T  G  S  Q  L  S  S  R :   Q  L  V  K  L  R  Q  S  S  *  T  Q  P  V  A  R  L  *  S  I  T  W  S  E  K  S  Q  P  C  K  W  *  S  Y  A  R  A  G  L  Y  S  S  W  T  P  F  K  S  E  D  C  T  H  W  *  R  S  C  K  G  W  P  F  E  S  G  N  F  *  S  K  V  I  S  R  N  G  L  S  A  F  F  F  S  P  *  A  E  T  G  F  K  H  R  I  C  A  I  W  *  L  *  G  I  R  Y  W  N  A  F  W  S  T  V  S  L  G  *  S  P  Y  S  L  R  A  I  R  L  S  Y  L  A  S  F  I  N  G  T  S  I  R  I  K  W  T  R  T  G  L  S  P  F  P  *  A  K  L  F  P  W  I  T  S  R  G  V  C  S  I  W  K  S  F  G  *  A  F  W  F  F  P  R  I  S  S  N  I  I  Y  E  P  T   </first_frame>
            <second_frame>  H  R  G  F  V  M  I  S  Y  Y  D  I  R  A  A  R  T  A  M  R  A  L  Q  N  K  P  L  R  R  R  K  L  D  I  H  F  S  I  P  K  :  E  N  P  S  E  K  D  I  N  Q  G  T  L  V  V  F  N  L  D  P  S  V  S  N  E  D  L  R  Q  I  F  G  V  Y  G  E  V  K  E  :  I  R  E  T  P  H  K  R  H  H  K  F  I  E  F  Y  D  V  R  A  A  D  A  A  L  K  A  L  N  R  S  D  I  A  G  K  R  I  K  L  E  P  S  R  P  G  G  A  R  R  N :   L  M  Q  Q  L  T  Q  E  L  E  H  D  E  I  R  S  F  R  H  S  V  G  S  P  V  A  S  S  P  P   : G  S  W  S  N  F  G  S  P  V  E  P  N  P  L  R  G  Y  S  Q  S  P  G  L  R  N  L  S  P  V  N  G  N  L  M  P  G  L  A  S  I  L  P  G  H  L  S  S  P  K  I  A  P  I  G  K  D  P  A  R  V  G  H  L  N  Q  V  T  S  S  P  K  S  S  Q  G  M  G  Y  Q  H  S  F  S  V  P  E  Q  K  P  A  L  S  I  G  S  V  P  F  G  N  S  K  A  S  G  T  G  T  L  S  G  P  Q  F  L  W  G  S  P  P  I  H  S  E  R  S  D  S  P  I  W  P  A  S  S  M  A  R  P  F  A  S  N  G  Q  G  Q  G  Y  L  H  S  R  R  Q  S  S  F  L  G  S  H  H  V  G  S  A  P  S  G  N  P  L  D  R  H  F  G  F  F  P  E  S  P  Q  T  S  Y  M  N  P  H  </second_frame>
            <third_frame>   I  G  A  L  *  *  Y  L  T  M  T  S  E  L  L  E  L  Q  C  V  L  Y  K  I  S  P  *  D  E  E  S  S  T  F  I  F  P  F  P  R :   K  I  R  Q  R  K  I  L  T  K  E  L  L  S  C  S  T  W  I  H  R  Y  P  M  R  I  F  G  K  S  L  E  C  M  G  K  S  R  R :   L  E  K  H  H  I  N  A  I  T  N  S  S  N  S  T  M  S  E  Q  L  M  Q  L  L  K  H  *  I  V  V  T  L  L  E  S  G  *  N  L  N  P  A  D  L  V  E  P  V  E   : I  *  C  S  N  *  L  K  N  W  N  T  M  K  F  D  H  L  G  T  Q  L  D  H  R  *  P  A  L  L  Q  :  A  A  G  Q  T  S  A  V  Q  L  N  P  T  R  C  E  V  I  V  N  H  L  V  *  E  I  S  A  L  *  M  V  I  L  C  Q  G  W  P  L  F  F  L  D  T  F  Q  V  R  R  L  H  P  L  V  K  I  L  Q  G  L  A  I  *  I  R  *  L  L  V  Q  S  H  L  K  E  W  V  I  S  I  L  F  Q  S  L  S  R  N  R  L  *  A  *  D  L  C  H  L  V  T  L  R  H  P  V  L  E  R  F  L  V  H  S  F  F  G  V  V  P  L  F  T  Q  S  D  P  T  L  L  S  G  Q  L  H  Q  W  H  V  H  S  H  Q  M  D  K  D  R  A  I  S  I  P  V  G  K  A  L  S  L  D  H  I  T  W  G  L  L  H  L  E  I  L  W  I  G  I  L  V  F  S  Q  N  L  L  K  H  H  I  *  T  H  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42365" stop="42484"/>
                    <exon start="42557" stop="42673"/>
                    <exon start="42790" stop="42941"/>
                    <exon start="44081" stop="44172"/>
                    <exon start="44304" stop="44881"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKENPSEKDINQGTLVVFNLDPSVSNEDLRQIFGVYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEHDEIRSFRHSVGSPVASSPPGSWSNFGSPVEPNPLRGYSQSPGLRNLSPVNGNLMPGLASILPGHLSSPKIAPIGKDPARVGHLNQVTSSPKSSQGMGYQHSFSVPEQKPALSIGSVPFGNSKASGTGTLSGPQFLWGSPPIHSERSDSPIWPASSMARPFASNGQGQGYLHSRRQSSFLGSHHVGSAPSGNPLDRHFGFFPESPQTSYMNPH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45603" PGL_stop="46841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45603" e_stop="45644"/>
            <exon e_start="46090" e_stop="46269"/>
            <exon e_start="46458" e_stop="46841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45603" e_stop="45644" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.991">
            <gDNA_intron_boundary i_start="45645" i_stop="46089" i_length="445"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46090" e_stop="46269" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.865" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46270" i_stop="46457" i_length="188"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="46458" e_stop="46841" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45603" stop="45644"/>
              <exon start="46090" stop="46269"/>
              <exon start="46458" stop="46841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45603" stop="45644"/>
              <exon start="46090" stop="46269"/>
              <exon start="46458" stop="46841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45604" stop="45644"/>
              <exon start="46090" stop="46269"/>
              <exon start="46458" stop="46841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAACATGGTGTCTCCTGCACATATCGTCTCCTTTTACGAG : GCATTCAATGGAAAGAAGTGGGAAAAGTTTAACAGTGAAAAAGTTGCATCATTGGCTTACGCACGTATCCAGGGAAAGGTAGCTCTGGTTACTCACTTCCAAAACTCAAGCTTGATGAATGAAGACAAAAGATGCCGACCAATTCTTTTCCAGTCAGAGGGCCAAGAGGCAGCTGATGAG : GAAACGTTGCCATCCAGCAATCTGAATATTTGTATCCGTCGGCCTGATGGGTCATATTCAGGAGATTCTCTTGATAGCCCAACAAGCGATATAGATGGGAGACCAGAGCTATTCACTGGAAGCAGCTGACCCTCAACCGTGGCAATGGGTGTTCTAACTGTGAATAGAAATTCAAGTACATAATTTGTCAATGAAACCAGGAAACTGCATATAGTTACTTATGTGAGCTAGTTGTGTCTGCTTTTTGGATGGAGGACACTCTAGAGCATGTAGGACGAATTGTTACAGAGGCCGCGAGCATTTTGTTTATATGTAGAATGATGACAATTGATCTATTTAACAGTGGGGGAAAGTAAAATAAGGTTTTAAGCATTCAGCCAACTT</gDNA_template>
            <first_frame> I  N  M  V  S  P  A  H  I  V  S  F  Y  E  :  A  F  N  G  K  K  W  E  K  F  N  S  E  K  V  A  S  L  A  Y  A  R  I  Q  G  K  V  A  L  V  T  H  F  Q  N  S  S  L  M  N  E  D  K  R  C  R  P  I  L  F  Q  S  E  G  Q  E  A  A  D  E  :  E  T  L  P  S  S  N  L  N  I  C  I  R  R  P  D  G  S  Y  S  G  D  S  L  D  S  P  T  S  D  I  D  G  R  P  E  L  F  T  G  S  S  *  P  S  T  V  A  M  G  V  L  T  V  N  R  N  S  S  T  *  F  V  N  E  T  R  K  L  H  I  V  T  Y  V  S  *  L  C  L  L  F  G  W  R  T  L  *  S  M  *  D  E  L  L  Q  R  P  R  A  F  C  L  Y  V  E  *  *  Q  L  I  Y  L  T  V  G  E  S  K  I  R  F  *  A  F  S  Q  L </first_frame>
            <second_frame>  L  T  W  C  L  L  H  I  S  S  P  F  T  R :   H  S  M  E  R  S  G  K  S  L  T  V  K  K  L  H  H  W  L  T  H  V  S  R  E  R  *  L  W  L  L  T  S  K  T  Q  A  *  *  M  K  T  K  D  A  D  Q  F  F  S  S  Q  R  A  K  R  Q  L  M  R :   K  R  C  H  P  A  I  *  I  F  V  S  V  G  L  M  G  H  I  Q  E  I  L  L  I  A  Q  Q  A  I  *  M  G  D  Q  S  Y  S  L  E  A  A  D  P  Q  P  W  Q  W  V  F  *  L  *  I  E  I  Q  V  H  N  L  S  M  K  P  G  N  C  I  *  L  L  M  *  A  S  C  V  C  F  L  D  G  G  H  S  R  A  C  R  T  N  C  Y  R  G  R  E  H  F  V  Y  M  *  N  D  D  N  *  S  I  *  Q  W  G  K  V  K  *  G  F  K  H  S  A  N   </second_frame>
            <third_frame>   *  H  G  V  S  C  T  Y  R  L  L  L  R   : G  I  Q  W  K  E  V  G  K  V  *  Q  *  K  S  C  I  I  G  L  R  T  Y  P  G  K  G  S  S  G  Y  S  L  P  K  L  K  L  D  E  *  R  Q  K  M  P  T  N  S  F  P  V  R  G  P  R  G  S  *  *   : G  N  V  A  I  Q  Q  S  E  Y  L  Y  P  S  A  *  W  V  I  F  R  R  F  S  *  *  P  N  K  R  Y  R  W  E  T  R  A  I  H  W  K  Q  L  T  L  N  R  G  N  G  C  S  N  C  E  *  K  F  K  Y  I  I  C  Q  *  N  Q  E  T  A  Y  S  Y  L  C  E  L  V  V  S  A  F  W  M  E  D  T  L  E  H  V  G  R  I  V  T  E  A  A  S  I  L  F  I  C  R  M  M  T  I  D  L  F  N  S  G  G  K  *  N  K  V  L  S  I  Q  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45603" stop="45644"/>
                    <exon start="46090" stop="46269"/>
                    <exon start="46458" stop="46586"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INMVSPAHIVSFYEAFNGKKWEKFNSEKVASLAYARIQGKVALVTHFQNSSLMNEDKRCRPILFQSEGQEAADEETLPSSNLNICIRRPDGSYSGDSLDSPTSDIDGRPELFTGSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="51992" PGL_stop="47359"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51992" e_stop="51812"/>
            <exon e_start="50770" e_stop="50455"/>
            <exon e_start="50182" e_stop="50087"/>
            <exon e_start="49994" e_stop="49926"/>
            <exon e_start="49837" e_stop="49709"/>
            <exon e_start="47889" e_stop="47790"/>
            <exon e_start="47693" e_stop="47359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51992" e_stop="51812" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.964">
            <gDNA_intron_boundary i_start="51811" i_stop="50771" i_length="1041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50770" e_stop="50455" e_length="316"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.990">
            <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50182" e_stop="50087" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49994" e_stop="49926" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="49837" e_stop="49709" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.783">
            <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47889" e_stop="47790" e_length="100"/>
          </exon>
          <intron i_serial="6" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47693" e_stop="47359" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51992" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51973" stop="51812"/>
              <exon start="50770" stop="50612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51969" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49827"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51969" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51969" stop="51812"/>
              <exon start="50770" stop="50640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279361" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51967" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51967" stop="51812"/>
              <exon start="50770" stop="50562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51966" stop="51812"/>
              <exon start="50770" stop="50654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51964" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51963" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51963" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51961" stop="51812"/>
              <exon start="50770" stop="50513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51955" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704352" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51954" stop="51812"/>
              <exon start="50770" stop="50513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51905" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51905" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51894" stop="51812"/>
              <exon start="50770" stop="50577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51869" stop="51812"/>
              <exon start="50770" stop="50494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51840" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51840" stop="51812"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50593" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49802" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49801" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49768" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTAAAACCCTCGGCTTGTTTCTCACAGAGTCTCTGCTACTGTGGGGTTTTGATGGAGAATTCAGCTATGAAGAAGATGAAGAAGCAAGTGCTTCTCTATTACTGTGTTGAGATGGAAGATGTTGCTCGCAAAATCGCTTCGGAATCCGATTCTATTACCCTCCATTCTATTAACTGGAG : GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG : GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG : ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT : GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG : AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG : GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTTATATAATATGT</gDNA_template>
            <first_frame> D  *  N  P  R  L  V  S  H  R  V  S  A  T  V  G  F  *  W  R  I  Q  L  *  R  R  *  R  S  K  C  F  S  I  T  V  L  R  W  K  M  L  L  A  K  S  L  R  N  P  I  L  L  P  S  I  L  L  T  G   : G  V  L  L  M  V  S  Q  I  S  L  *  T  M  H  M  I  S  A  G  S  M  L  L  F  *  H  L  S  A  H  L  Q  S  S  L  N  S  F  L  *  Y  S  H  F  Q  G  C  L  S  P  H  L  R  L  C  Y  L  S  S  Q  L  V  P  L  R  G  W  R  K  K  E  M  W  P  L  H  L  P  W  P  E  *  Y  Q  I  F  Q  Y  Q  G  V  V  Q  P  A  *  L  S  M  T  Y  M  H  C  R :   R  G  S  I  L  E  I  M  C  C  L  C  L  R  L  E  F  H  C  *  S  N  V  F  S  N  F  L  T  L  K  R :   *  L  *  P  F  L  M  M  E  L  G  R  G  F  T  S  N  *  F  I  I  P  L :   L  S  A  L  K  C  V  K  V  I  R  E  S  S  G  *  K  R  V  I  L  L  A  V  M  W  S  L  L  T  I  W  S  S  L  E  V  P  *  L  N  A  R :   K  F  W  P  L  M  V  H  Q  K  L  V  L  M  *  P  M  E  F  S  Q  T  G  H  G  S  V  F  F  T  R  M  M  :  A  L  R  K  H  S  L  T  F  G  R  Q  I  H  V  L  I  L  *  K  P  S  P  I  R  L  H  L  K  L  L  V  W  Q  D  Q  *  L  M  L  F  K  S  K  E  H  *  I  R  S  V  I  V  K  R  V  L  K  I  C  S  L  A  *  F  A  V  V  T  E  T  C  L  V  A  Q  L  C  D  S  H  C  E  L  Y  L  T  E  L  L  S  N  C  T  S  V  L  Y  N  N  I  S  R  I  S  C  Y  V  I  *  Y   </first_frame>
            <second_frame>  T  K  T  L  G  L  F  L  T  E  S  L  L  L  W  G  F  D  G  E  F  S  Y  E  E  D  E  E  A  S  A  S  L  L  L  C  *  D  G  R  C  C  S  Q  N  R  F  G  I  R  F  Y  Y  P  P  F  Y  *  L  E  :  E  F  C  *  W  F  P  K  S  L  Y  K  Q  C  T  *  Y  P  R  A  A  C  C  F  S  S  I  F  Q  L  T  C  S  H  L  *  T  A  F  C  D  I  R  T  S  K  A  V  C  R  L  I  Y  A  C  V  T  F  L  P  N  W  Y  L  *  E  D  G  G  R  R  R  C  G  H  C  I  Y  H  G  Q  N  N  I  K  Y  S  N  I  K  G  W  S  N  Q  L  S  Y  L  *  H  T  C  I  A   : G  E  V  L  F  W  R  *  C  A  A  S  V  *  D  W  N  S  T  A  E  A  T  S  S  A  T  S  *  L  *  K   : D  S  Y  S  L  S  *  *  W  S  L  E  E  V  S  Q  A  T  S  S  L  S  H   : C  Y  L  H  *  S  A  *  R  *  *  E  N  R  Q  A  K  R  G  *  S  C  W  L  S  C  G  H  C  *  R  F  G  P  V  W  R  Y  P  N  *  M  P   : E  S  F  G  L  S  W  C  I  K  S  *  C  L  C  D  P  W  N  F  P  K  P  V  M  G  A  F  S  S  Q  E  *  W :   L  *  E  S  I  H  L  L  L  D  D  R  F  M  S  S  Y  C  E  S  R  R  Q  *  G  S  I  *  S  Y  *  F  G  R  I  N  S  *  C  S  S  N  L  K  N  I  R  *  D  Q  L  *  *  N  E  C  *  K  F  V  H  W  H  D  L  L  L  *  R  K  L  V  L  L  L  N  S  V  T  V  I  V  S  S  I  *  R  N  S  Y  Q  I  A  R  L  F  S  I  T  I  F  H  V  F  H  V  M  L  Y  N  M  </second_frame>
            <third_frame>   L  K  P  S  A  C  F  S  Q  S  L  C  Y  C  G  V  L  M  E  N  S  A  M  K  K  M  K  K  Q  V  L  L  Y  Y  C  V  E  M  E  D  V  A  R  K  I  A  S  E  S  D  S  I  T  L  H  S  I  N  W  R :   S  F  A  D  G  F  P  N  L  F  I  N  N  A  H  D  I  R  G  Q  H  V  A  F  L  A  S  F  S  S  P  A  V  I  F  E  Q  L  S  V  I  F  A  L  P  R  L  F  V  A  S  F  T  L  V  L  P  F  F  P  T  G  T  F  E  R  M  E  E  E  G  D  V  A  T  A  F  T  M  A  R  I  I  S  N  I  P  I  S  R  G  G  P  T  S  L  V  I  Y  D  I  H  A  L  Q  :  E  R  F  Y  F  G  D  N  V  L  P  L  F  E  T  G  I  P  L  L  K  Q  R  L  Q  Q  L  P  N  S  E  K  :  I  V  I  A  F  P  D  D  G  A  W  K  R  F  H  K  Q  L  V  H  Y  P  T  :  V  I  C  T  K  V  R  E  G  D  K  R  I  V  R  L  K  E  G  N  P  A  G  C  H  V  V  I  V  D  D  L  V  Q  S  G  G  T  L  I  E  C  Q  :  K  V  L  A  S  H  G  A  S  K  V  S  A  Y  V  T  H  G  I  F  P  N  R  S  W  E  R  F  L  H  K  N  D   : G  S  E  K  A  F  T  Y  F  W  T  T  D  S  C  P  H  T  V  K  A  V  A  N  K  A  P  F  E  V  I  S  L  A  G  S  I  A  D  A  L  Q  I  *  R  T  L  D  K  I  S  Y  S  E  T  S  V  E  N  L  F  T  G  M  I  C  C  C  N  G  N  L  S  C  C  S  T  L  *  Q  S  L  *  A  L  F  N  G  T  L  I  K  L  H  V  C  S  L  *  Q  Y  F  T  Y  F  M  L  C  Y  I  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51990" stop="51812"/>
                    <exon start="50770" stop="50455"/>
                    <exon start="50182" stop="50087"/>
                    <exon start="49994" stop="49926"/>
                    <exon start="49837" stop="49709"/>
                    <exon start="47889" stop="47790"/>
                    <exon start="47693" stop="47563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKPSACFSQSLCYCGVLMENSAMKKMKKQVLLYYCVEMEDVARKIASESDSITLHSINWRSFADGFPNLFINNAHDIRGQHVAFLASFSSPAVIFEQLSVIFALPRLFVASFTLVLPFFPTGTFERMEEEGDVATAFTMARIISNIPISRGGPTSLVIYDIHALQERFYFGDNVLPLFETGIPLLKQRLQQLPNSEKIVIAFPDDGAWKRFHKQLVHYPTVICTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLASHGASKVSAYVTHGIFPNRSWERFLHKNDGSEKAFTYFWTTDSCPHTVKAVANKAPFEVISLAGSIADALQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="51281" e_stop="51156"/>
            <exon e_start="50770" e_stop="50455"/>
            <exon e_start="50182" e_stop="50087"/>
            <exon e_start="49994" e_stop="49709"/>
            <exon e_start="47889" e_stop="47790"/>
            <exon e_start="47693" e_stop="47359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51281" e_stop="51156" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.964">
            <gDNA_intron_boundary i_start="51155" i_stop="50771" i_length="385"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50770" e_stop="50455" e_length="316"/>
          </exon>
          <intron i_serial="2" don_prob="0.891" acc_prob="0.990">
            <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50182" e_stop="50087" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49994" e_stop="49709" e_length="286"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.783">
            <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47889" e_stop="47790" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47693" e_stop="47359" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51281" stop="51156"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51280" stop="51156"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51280" stop="51156"/>
              <exon start="50770" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50122" stop="50087"/>
              <exon start="49994" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49802" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49801" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49768" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTCATTACAACAATAACATACTCATTATAGTTCCACTATGGGGAGAGTGGGTTGTACACAGCCATTATCGCTACCTTTGAAGCTTCCTTCATTTGTTGGTGTTGTGAATAGTCTTATGACTAAG : GAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG : GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG : ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACTGTTAGTTAAAAATTATAATTTTCTACTTTGGTTTCTGCCTGTTACCCAATCTTGAACTTTTGTGTAATCAGCAGATTATGTCATTTAGGTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG : AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG : GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTTATATAATATGT</gDNA_template>
            <first_frame> L  S  L  Q  Q  *  H  T  H  Y  S  S  T  M  G  R  V  G  C  T  Q  P  L  S  L  P  L  K  L  P  S  F  V  G  V  V  N  S  L  M  T  K  :  E  F  C  *  W  F  P  K  S  L  Y  K  Q  C  T  *  Y  P  R  A  A  C  C  F  S  S  I  F  Q  L  T  C  S  H  L  *  T  A  F  C  D  I  R  T  S  K  A  V  C  R  L  I  Y  A  C  V  T  F  L  P  N  W  Y  L  *  E  D  G  G  R  R  R  C  G  H  C  I  Y  H  G  Q  N  N  I  K  Y  S  N  I  K  G  W  S  N  Q  L  S  Y  L  *  H  T  C  I  A   : G  E  V  L  F  W  R  *  C  A  A  S  V  *  D  W  N  S  T  A  E  A  T  S  S  A  T  S  *  L  *  K   : D  S  Y  S  L  S  *  *  W  S  L  E  E  V  S  Q  A  T  S  S  L  S  H  C  *  L  K  I  I  I  F  Y  F  G  F  C  L  L  P  N  L  E  L  L  C  N  Q  Q  I  M  S  F  R  L  S  A  L  K  C  V  K  V  I  R  E  S  S  G  *  K  R  V  I  L  L  A  V  M  W  S  L  L  T  I  W  S  S  L  E  V  P  *  L  N  A  R :   K  F  W  P  L  M  V  H  Q  K  L  V  L  M  *  P  M  E  F  S  Q  T  G  H  G  S  V  F  F  T  R  M  M  :  A  L  R  K  H  S  L  T  F  G  R  Q  I  H  V  L  I  L  *  K  P  S  P  I  R  L  H  L  K  L  L  V  W  Q  D  Q  *  L  M  L  F  K  S  K  E  H  *  I  R  S  V  I  V  K  R  V  L  K  I  C  S  L  A  *  F  A  V  V  T  E  T  C  L  V  A  Q  L  C  D  S  H  C  E  L  Y  L  T  E  L  L  S  N  C  T  S  V  L  Y  N  N  I  S  R  I  S  C  Y  V  I  *  Y   </first_frame>
            <second_frame>  C  H  Y  N  N  N  I  L  I  I  V  P  L  W  G  E  W  V  V  H  S  H  Y  R  Y  L  *  S  F  L  H  L  L  V  L  *  I  V  L  *  L  R :   S  F  A  D  G  F  P  N  L  F  I  N  N  A  H  D  I  R  G  Q  H  V  A  F  L  A  S  F  S  S  P  A  V  I  F  E  Q  L  S  V  I  F  A  L  P  R  L  F  V  A  S  F  T  L  V  L  P  F  F  P  T  G  T  F  E  R  M  E  E  E  G  D  V  A  T  A  F  T  M  A  R  I  I  S  N  I  P  I  S  R  G  G  P  T  S  L  V  I  Y  D  I  H  A  L  Q  :  E  R  F  Y  F  G  D  N  V  L  P  L  F  E  T  G  I  P  L  L  K  Q  R  L  Q  Q  L  P  N  S  E  K  :  I  V  I  A  F  P  D  D  G  A  W  K  R  F  H  K  Q  L  V  H  Y  P  T  V  S  *  K  L  *  F  S  T  L  V  S  A  C  Y  P  I  L  N  F  C  V  I  S  R  L  C  H  L  G  Y  L  H  *  S  A  *  R  *  *  E  N  R  Q  A  K  R  G  *  S  C  W  L  S  C  G  H  C  *  R  F  G  P  V  W  R  Y  P  N  *  M  P   : E  S  F  G  L  S  W  C  I  K  S  *  C  L  C  D  P  W  N  F  P  K  P  V  M  G  A  F  S  S  Q  E  *  W :   L  *  E  S  I  H  L  L  L  D  D  R  F  M  S  S  Y  C  E  S  R  R  Q  *  G  S  I  *  S  Y  *  F  G  R  I  N  S  *  C  S  S  N  L  K  N  I  R  *  D  Q  L  *  *  N  E  C  *  K  F  V  H  W  H  D  L  L  L  *  R  K  L  V  L  L  L  N  S  V  T  V  I  V  S  S  I  *  R  N  S  Y  Q  I  A  R  L  F  S  I  T  I  F  H  V  F  H  V  M  L  Y  N  M  </second_frame>
            <third_frame>   V  I  T  T  I  T  Y  S  L  *  F  H  Y  G  E  S  G  L  Y  T  A  I  I  A  T  F  E  A  S  F  I  C  W  C  C  E  *  S  Y  D  *   : G  V  L  L  M  V  S  Q  I  S  L  *  T  M  H  M  I  S  A  G  S  M  L  L  F  *  H  L  S  A  H  L  Q  S  S  L  N  S  F  L  *  Y  S  H  F  Q  G  C  L  S  P  H  L  R  L  C  Y  L  S  S  Q  L  V  P  L  R  G  W  R  K  K  E  M  W  P  L  H  L  P  W  P  E  *  Y  Q  I  F  Q  Y  Q  G  V  V  Q  P  A  *  L  S  M  T  Y  M  H  C  R :   R  G  S  I  L  E  I  M  C  C  L  C  L  R  L  E  F  H  C  *  S  N  V  F  S  N  F  L  T  L  K  R :   *  L  *  P  F  L  M  M  E  L  G  R  G  F  T  S  N  *  F  I  I  P  L  L  V  K  N  Y  N  F  L  L  W  F  L  P  V  T  Q  S  *  T  F  V  *  S  A  D  Y  V  I  *  V  I  C  T  K  V  R  E  G  D  K  R  I  V  R  L  K  E  G  N  P  A  G  C  H  V  V  I  V  D  D  L  V  Q  S  G  G  T  L  I  E  C  Q  :  K  V  L  A  S  H  G  A  S  K  V  S  A  Y  V  T  H  G  I  F  P  N  R  S  W  E  R  F  L  H  K  N  D   : G  S  E  K  A  F  T  Y  F  W  T  T  D  S  C  P  H  T  V  K  A  V  A  N  K  A  P  F  E  V  I  S  L  A  G  S  I  A  D  A  L  Q  I  *  R  T  L  D  K  I  S  Y  S  E  T  S  V  E  N  L  F  T  G  M  I  C  C  C  N  G  N  L  S  C  C  S  T  L  *  Q  S  L  *  A  L  F  N  G  T  L  I  K  L  H  V  C  S  L  *  Q  Y  F  T  Y  F  M  L  C  Y  I  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51160" stop="51156"/>
                    <exon start="50770" stop="50455"/>
                    <exon start="50182" stop="50087"/>
                    <exon start="49994" stop="49917"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRSFADGFPNLFINNAHDIRGQHVAFLASFSSPAVIFEQLSVIFALPRLFVASFTLVLPFFPTGTFERMEEEGDVATAFTMARIISNIPISRGGPTSLVIYDIHALQERFYFGDNVLPLFETGIPLLKQRLQQLPNSEKIVIAFPDDGAWKRFHKQLVHYPTVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49837" stop="49709"/>
                    <exon start="47889" stop="47790"/>
                    <exon start="47693" stop="47563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VICTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLASHGASKVSAYVTHGIFPNRSWERFLHKNDGSEKAFTYFWTTDSCPHTVKAVANKAPFEVISLAGSIADALQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="51149" e_stop="50455"/>
            <exon e_start="50182" e_stop="50087"/>
            <exon e_start="49994" e_stop="49926"/>
            <exon e_start="49837" e_stop="49709"/>
            <exon e_start="47889" e_stop="47790"/>
            <exon e_start="47693" e_stop="47359"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.891" acc_prob="0.990" e_score="0.993"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.726" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.783" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="51149" e_stop="50455" e_length="695"/>
          </exon>
          <intron i_serial="1" don_prob="0.891" acc_prob="0.990">
            <gDNA_intron_boundary i_start="50454" i_stop="50183" i_length="272"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50182" e_stop="50087" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50086" i_stop="49995" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49994" e_stop="49926" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.726">
            <gDNA_intron_boundary i_start="49925" i_stop="49838" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="49837" e_stop="49709" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.783">
            <gDNA_intron_boundary i_start="49708" i_stop="47890" i_length="1819"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47889" e_stop="47790" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47693" e_stop="47359" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51149" stop="50455"/>
              <exon start="50182" stop="50099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51148" stop="50843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50593" stop="50455"/>
              <exon start="50182" stop="50087"/>
              <exon start="49994" stop="49926"/>
              <exon start="49837" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49802" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395962" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49801" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49768" stop="49709"/>
              <exon start="47889" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGACGCATAGACTTTATTTTCTAGTAGGGTGTGAAACAGATGCTTGGTACTAAAGTTCAATTGAGGAAAGACTACAATTAGCCAGTTATTATACTTTAATCTGGGATTAGTTTCTTCAGTTTAGTGGTAAAAAAGGTGATTGTTTTCAACAATAGCCAGGGTAAACAAGAAGGCTTATAAGTTATAACATCATTTTTGCATTGGTTACACAAAGTTCGATTATTTAGTTCCTGCATATTATGTAATTGGCCAAATAATCAGGCTTTCAATTGACAATTTGTATGCTAATAGCTTTGAAATGATGCTATTATTGTACCGTTGTTAGCATTGAATCTTACATGCGGCAAATGCTTATCAATATGTGGATTCATGTACCAGGAGTTTTGCTGATGGTTTCCCAAATCTCTTTATAAACAATGCACATGATATCCGCGGGCAGCATGTTGCTTTTCTAGCATCTTTCAGCTCACCTGCAGTCATCTTTGAACAGCTTTCTGTGATATTCGCACTTCCAAGGCTGTTTGTCGCCTCATTTACGCTTGTGTTACCTTTCTTCCCAACTGGTACCTTTGAGAGGATGGAGGAAGAAGGAGATGTGGCCACTGCATTTACCATGGCCAGAATAATATCAAATATTCCAATATCAAGGGGTGGTCCAACCAGCTTAGTTATCTATGACATACATGCATTGCAG : GAGAGGTTCTATTTTGGAGATAATGTGCTGCCTCTGTTTGAGACTGGAATTCCACTGCTGAAGCAACGTCTTCAGCAACTTCCTAACTCTGAAAAG : ATAGTTATAGCCTTTCCTGATGATGGAGCTTGGAAGAGGTTTCACAAGCAACTAGTTCATTATCCCACT : GTTATCTGCACTAAAGTGCGTGAAGGTGATAAGAGAATCGTCAGGCTAAAAGAGGGTAATCCTGCTGGCTGTCATGTGGTCATTGTTGACGATTTGGTCCAGTCTGGAGGTACCCTAATTGAATGCCAG : AAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG : GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTTATATAATATGT</gDNA_template>
            <first_frame> Q  T  H  R  L  Y  F  L  V  G  C  E  T  D  A  W  Y  *  S  S  I  E  E  R  L  Q  L  A  S  Y  Y  T  L  I  W  D  *  F  L  Q  F  S  G  K  K  G  D  C  F  Q  Q  *  P  G  *  T  R  R  L  I  S  Y  N  I  I  F  A  L  V  T  Q  S  S  I  I  *  F  L  H  I  M  *  L  A  K  *  S  G  F  Q  L  T  I  C  M  L  I  A  L  K  *  C  Y  Y  C  T  V  V  S  I  E  S  Y  M  R  Q  M  L  I  N  M  W  I  H  V  P  G  V  L  L  M  V  S  Q  I  S  L  *  T  M  H  M  I  S  A  G  S  M  L  L  F  *  H  L  S  A  H  L  Q  S  S  L  N  S  F  L  *  Y  S  H  F  Q  G  C  L  S  P  H  L  R  L  C  Y  L  S  S  Q  L  V  P  L  R  G  W  R  K  K  E  M  W  P  L  H  L  P  W  P  E  *  Y  Q  I  F  Q  Y  Q  G  V  V  Q  P  A  *  L  S  M  T  Y  M  H  C  R :   R  G  S  I  L  E  I  M  C  C  L  C  L  R  L  E  F  H  C  *  S  N  V  F  S  N  F  L  T  L  K  R :   *  L  *  P  F  L  M  M  E  L  G  R  G  F  T  S  N  *  F  I  I  P  L :   L  S  A  L  K  C  V  K  V  I  R  E  S  S  G  *  K  R  V  I  L  L  A  V  M  W  S  L  L  T  I  W  S  S  L  E  V  P  *  L  N  A  R :   K  F  W  P  L  M  V  H  Q  K  L  V  L  M  *  P  M  E  F  S  Q  T  G  H  G  S  V  F  F  T  R  M  M  :  A  L  R  K  H  S  L  T  F  G  R  Q  I  H  V  L  I  L  *  K  P  S  P  I  R  L  H  L  K  L  L  V  W  Q  D  Q  *  L  M  L  F  K  S  K  E  H  *  I  R  S  V  I  V  K  R  V  L  K  I  C  S  L  A  *  F  A  V  V  T  E  T  C  L  V  A  Q  L  C  D  S  H  C  E  L  Y  L  T  E  L  L  S  N  C  T  S  V  L  Y  N  N  I  S  R  I  S  C  Y  V  I  *  Y   </first_frame>
            <second_frame>  R  R  I  D  F  I  F  *  *  G  V  K  Q  M  L  G  T  K  V  Q  L  R  K  D  Y  N  *  P  V  I  I  L  *  S  G  I  S  F  F  S  L  V  V  K  K  V  I  V  F  N  N  S  Q  G  K  Q  E  G  L  *  V  I  T  S  F  L  H  W  L  H  K  V  R  L  F  S  S  C  I  L  C  N  W  P  N  N  Q  A  F  N  *  Q  F  V  C  *  *  L  *  N  D  A  I  I  V  P  L  L  A  L  N  L  T  C  G  K  C  L  S  I  C  G  F  M  Y  Q  E  F  C  *  W  F  P  K  S  L  Y  K  Q  C  T  *  Y  P  R  A  A  C  C  F  S  S  I  F  Q  L  T  C  S  H  L  *  T  A  F  C  D  I  R  T  S  K  A  V  C  R  L  I  Y  A  C  V  T  F  L  P  N  W  Y  L  *  E  D  G  G  R  R  R  C  G  H  C  I  Y  H  G  Q  N  N  I  K  Y  S  N  I  K  G  W  S  N  Q  L  S  Y  L  *  H  T  C  I  A   : G  E  V  L  F  W  R  *  C  A  A  S  V  *  D  W  N  S  T  A  E  A  T  S  S  A  T  S  *  L  *  K   : D  S  Y  S  L  S  *  *  W  S  L  E  E  V  S  Q  A  T  S  S  L  S  H   : C  Y  L  H  *  S  A  *  R  *  *  E  N  R  Q  A  K  R  G  *  S  C  W  L  S  C  G  H  C  *  R  F  G  P  V  W  R  Y  P  N  *  M  P   : E  S  F  G  L  S  W  C  I  K  S  *  C  L  C  D  P  W  N  F  P  K  P  V  M  G  A  F  S  S  Q  E  *  W :   L  *  E  S  I  H  L  L  L  D  D  R  F  M  S  S  Y  C  E  S  R  R  Q  *  G  S  I  *  S  Y  *  F  G  R  I  N  S  *  C  S  S  N  L  K  N  I  R  *  D  Q  L  *  *  N  E  C  *  K  F  V  H  W  H  D  L  L  L  *  R  K  L  V  L  L  L  N  S  V  T  V  I  V  S  S  I  *  R  N  S  Y  Q  I  A  R  L  F  S  I  T  I  F  H  V  F  H  V  M  L  Y  N  M  </second_frame>
            <third_frame>   D  A  *  T  L  F  S  S  R  V  *  N  R  C  L  V  L  K  F  N  *  G  K  T  T  I  S  Q  L  L  Y  F  N  L  G  L  V  S  S  V  *  W  *  K  R  *  L  F  S  T  I  A  R  V  N  K  K  A  Y  K  L  *  H  H  F  C  I  G  Y  T  K  F  D  Y  L  V  P  A  Y  Y  V  I  G  Q  I  I  R  L  S  I  D  N  L  Y  A  N  S  F  E  M  M  L  L  L  Y  R  C  *  H  *  I  L  H  A  A  N  A  Y  Q  Y  V  D  S  C  T  R  S  F  A  D  G  F  P  N  L  F  I  N  N  A  H  D  I  R  G  Q  H  V  A  F  L  A  S  F  S  S  P  A  V  I  F  E  Q  L  S  V  I  F  A  L  P  R  L  F  V  A  S  F  T  L  V  L  P  F  F  P  T  G  T  F  E  R  M  E  E  E  G  D  V  A  T  A  F  T  M  A  R  I  I  S  N  I  P  I  S  R  G  G  P  T  S  L  V  I  Y  D  I  H  A  L  Q  :  E  R  F  Y  F  G  D  N  V  L  P  L  F  E  T  G  I  P  L  L  K  Q  R  L  Q  Q  L  P  N  S  E  K  :  I  V  I  A  F  P  D  D  G  A  W  K  R  F  H  K  Q  L  V  H  Y  P  T  :  V  I  C  T  K  V  R  E  G  D  K  R  I  V  R  L  K  E  G  N  P  A  G  C  H  V  V  I  V  D  D  L  V  Q  S  G  G  T  L  I  E  C  Q  :  K  V  L  A  S  H  G  A  S  K  V  S  A  Y  V  T  H  G  I  F  P  N  R  S  W  E  R  F  L  H  K  N  D   : G  S  E  K  A  F  T  Y  F  W  T  T  D  S  C  P  H  T  V  K  A  V  A  N  K  A  P  F  E  V  I  S  L  A  G  S  I  A  D  A  L  Q  I  *  R  T  L  D  K  I  S  Y  S  E  T  S  V  E  N  L  F  T  G  M  I  C  C  C  N  G  N  L  S  C  C  S  T  L  *  Q  S  L  *  A  L  F  N  G  T  L  I  K  L  H  V  C  S  L  *  Q  Y  F  T  Y  F  M  L  C  Y  I  I  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50817" stop="50455"/>
                    <exon start="50182" stop="50087"/>
                    <exon start="49994" stop="49926"/>
                    <exon start="49837" stop="49709"/>
                    <exon start="47889" stop="47790"/>
                    <exon start="47693" stop="47563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILHAANAYQYVDSCTRSFADGFPNLFINNAHDIRGQHVAFLASFSSPAVIFEQLSVIFALPRLFVASFTLVLPFFPTGTFERMEEEGDVATAFTMARIISNIPISRGGPTSLVIYDIHALQERFYFGDNVLPLFETGIPLLKQRLQQLPNSEKIVIAFPDDGAWKRFHKQLVHYPTVICTKVREGDKRIVRLKEGNPAGCHVVIVDDLVQSGGTLIECQKVLASHGASKVSAYVTHGIFPNRSWERFLHKNDGSEKAFTYFWTTDSCPHTVKAVANKAPFEVISLAGSIADALQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="47897" e_stop="47790"/>
            <exon e_start="47693" e_stop="47370"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="47897" e_stop="47790" e_length="108"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.960">
            <gDNA_intron_boundary i_start="47789" i_stop="47694" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47693" e_stop="47370" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47897" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47878" stop="47790"/>
              <exon start="47693" stop="47370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACCCCAGAAAGTTTTGGCCTCTCATGGTGCATCAAAAGTTAGTGCTTATGTGACCCATGGAATTTTCCCAAACCGGTCATGGGAGCGTTTTCTTCACAAGAATGATG : GCTCTGAGAAAGCATTCACTTACTTTTGGACGACAGATTCATGTCCTCATACTGTGAAAGCCGTCGCCAATAAGGCTCCATTTGAAGTTATTAGTTTGGCAGGATCAATAGCTGATGCTCTTCAAATCTAAAGAACATTAGATAAGATCAGTTATAGTGAAACGAGTGTTGAAAATTTGTTCACTGGCATGATTTGCTGTTGTAACGGAAACTTGTCTTGTTGCTCAACTCTGTGACAGTCATTGTGAGCTCTATTTAACGGAACTCTTATCAAATTGCACGTCTGTTCTCTATAACAATATTTCACGTATTTCATGTTATGTT</gDNA_template>
            <first_frame> N  P  R  K  F  W  P  L  M  V  H  Q  K  L  V  L  M  *  P  M  E  F  S  Q  T  G  H  G  S  V  F  F  T  R  M  M  :  A  L  R  K  H  S  L  T  F  G  R  Q  I  H  V  L  I  L  *  K  P  S  P  I  R  L  H  L  K  L  L  V  W  Q  D  Q  *  L  M  L  F  K  S  K  E  H  *  I  R  S  V  I  V  K  R  V  L  K  I  C  S  L  A  *  F  A  V  V  T  E  T  C  L  V  A  Q  L  C  D  S  H  C  E  L  Y  L  T  E  L  L  S  N  C  T  S  V  L  Y  N  N  I  S  R  I  S  C  Y  V </first_frame>
            <second_frame>  T  P  E  S  F  G  L  S  W  C  I  K  S  *  C  L  C  D  P  W  N  F  P  K  P  V  M  G  A  F  S  S  Q  E  *  W :   L  *  E  S  I  H  L  L  L  D  D  R  F  M  S  S  Y  C  E  S  R  R  Q  *  G  S  I  *  S  Y  *  F  G  R  I  N  S  *  C  S  S  N  L  K  N  I  R  *  D  Q  L  *  *  N  E  C  *  K  F  V  H  W  H  D  L  L  L  *  R  K  L  V  L  L  L  N  S  V  T  V  I  V  S  S  I  *  R  N  S  Y  Q  I  A  R  L  F  S  I  T  I  F  H  V  F  H  V  M   </second_frame>
            <third_frame>   P  Q  K  V  L  A  S  H  G  A  S  K  V  S  A  Y  V  T  H  G  I  F  P  N  R  S  W  E  R  F  L  H  K  N  D   : G  S  E  K  A  F  T  Y  F  W  T  T  D  S  C  P  H  T  V  K  A  V  A  N  K  A  P  F  E  V  I  S  L  A  G  S  I  A  D  A  L  Q  I  *  R  T  L  D  K  I  S  Y  S  E  T  S  V  E  N  L  F  T  G  M  I  C  C  C  N  G  N  L  S  C  C  S  T  L  *  Q  S  L  *  A  L  F  N  G  T  L  I  K  L  H  V  C  S  L  *  Q  Y  F  T  Y  F  M  L  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47895" stop="47790"/>
                    <exon start="47693" stop="47563"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PQKVLASHGASKVSAYVTHGIFPNRSWERFLHKNDGSEKAFTYFWTTDSCPHTVKAVANKAPFEVISLAGSIADALQI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="73187" PGL_stop="78478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73187" e_stop="73360"/>
            <exon e_start="75811" e_stop="76284"/>
            <exon e_start="78235" e_stop="78478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73187" e_stop="73360" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73361" i_stop="75810" i_length="2450"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="75811" e_stop="76284" e_length="474"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76285" i_stop="78234" i_length="1950"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="78235" e_stop="78478" e_length="244"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73187" stop="73360"/>
              <exon start="75811" stop="76178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73235" stop="73360"/>
              <exon start="75811" stop="76284"/>
              <exon start="78235" stop="78478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73236" stop="73360"/>
              <exon start="75811" stop="76110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304578" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGACACCACAGTTTGGGGGAAGTGCAAAGGCGAAGGATGCATTATGGCAAAGGATGAGTGGTTGTATGGACCAATTGCATTCCATTGTGGTTGCTGTTTGGCATTTGCAGAGGGTTTTATCGAAGAAAAGAGACCCCTTTACGCATGTCTTGCTGCTTGATGAGGTCATGCAG : GAAGGTGATCCGATATTGACGGATCGTGTTTGGGAGGCACTGGGTAAATCTTTTGCTAACCAAATGAAGTCCACTTTCAGCACATCAAGTTTTGTTAAGGAGATATTCACTCTTGGATATCCAAAACTCTTCTCTATGTTAGAAAACCTGCTTGAAAGAATTTCACGTGATACAGACGTCAAAGGAGTTCCACCAGCTCTCAGTTCAGAAGCAAAGGACCAAATGTTATCTTCCATTGAAATATTCCAGACTGCTTTCCTAACCCTCTGTCTGAGCCGTCTTTCAGAACTTGTTAATACTGTATTTCCAGTGTCCGGTCGTGGAACTGTTCCTTCAAAAGATCACATAGCAAGGATTATATCACGAATTCAAGAAGAAATAGAAGCCGTCCAGATGGATGCTCAGTTAACTCTTCTTGTCTTGCGTGAGATCAACAAAGTTCTGCTTCTGCTTTCAGAAAGAACAGAATACCAG : ATATCTGCAGGTCCCGAGGCACGACAGATAACAGGTCCTGCAACTCCAGCACAGGTGAAGAACTTTGCGTTATGCCAGCATCTGCAAGAAATTCATACCCGCATATCGTCTATGGTGGCAGGATTACCAGCTATTGCAACCGATATTTTGTCTCCCGCACTGGGATCTATCTATGGGGTTGCAGGTGATTCAGTGACACCACTATTCCAATCAATGCTTGATCGACTGGAGTCATGCATCTTGC</gDNA_template>
            <first_frame> G  T  P  Q  F  G  G  S  A  K  A  K  D  A  L  W  Q  R  M  S  G  C  M  D  Q  L  H  S  I  V  V  A  V  W  H  L  Q  R  V  L  S  K  K  R  D  P  F  T  H  V  L  L  L  D  E  V  M  Q  :  E  G  D  P  I  L  T  D  R  V  W  E  A  L  G  K  S  F  A  N  Q  M  K  S  T  F  S  T  S  S  F  V  K  E  I  F  T  L  G  Y  P  K  L  F  S  M  L  E  N  L  L  E  R  I  S  R  D  T  D  V  K  G  V  P  P  A  L  S  S  E  A  K  D  Q  M  L  S  S  I  E  I  F  Q  T  A  F  L  T  L  C  L  S  R  L  S  E  L  V  N  T  V  F  P  V  S  G  R  G  T  V  P  S  K  D  H  I  A  R  I  I  S  R  I  Q  E  E  I  E  A  V  Q  M  D  A  Q  L  T  L  L  V  L  R  E  I  N  K  V  L  L  L  L  S  E  R  T  E  Y  Q  :  I  S  A  G  P  E  A  R  Q  I  T  G  P  A  T  P  A  Q  V  K  N  F  A  L  C  Q  H  L  Q  E  I  H  T  R  I  S  S  M  V  A  G  L  P  A  I  A  T  D  I  L  S  P  A  L  G  S  I  Y  G  V  A  G  D  S  V  T  P  L  F  Q  S  M  L  D  R  L  E  S  C  I  L  </first_frame>
            <second_frame>  G  H  H  S  L  G  E  V  Q  R  R  R  M  H  Y  G  K  G  *  V  V  V  W  T  N  C  I  P  L  W  L  L  F  G  I  C  R  G  F  Y  R  R  K  E  T  P  L  R  M  S  C  C  L  M  R  S  C  R :   K  V  I  R  Y  *  R  I  V  F  G  R  H  W  V  N  L  L  L  T  K  *  S  P  L  S  A  H  Q  V  L  L  R  R  Y  S  L  L  D  I  Q  N  S  S  L  C  *  K  T  C  L  K  E  F  H  V  I  Q  T  S  K  E  F  H  Q  L  S  V  Q  K  Q  R  T  K  C  Y  L  P  L  K  Y  S  R  L  L  S  *  P  S  V  *  A  V  F  Q  N  L  L  I  L  Y  F  Q  C  P  V  V  E  L  F  L  Q  K  I  T  *  Q  G  L  Y  H  E  F  K  K  K  *  K  P  S  R  W  M  L  S  *  L  F  L  S  C  V  R  S  T  K  F  C  F  C  F  Q  K  E  Q  N  T  R :   Y  L  Q  V  P  R  H  D  R  *  Q  V  L  Q  L  Q  H  R  *  R  T  L  R  Y  A  S  I  C  K  K  F  I  P  A  Y  R  L  W  W  Q  D  Y  Q  L  L  Q  P  I  F  C  L  P  H  W  D  L  S  M  G  L  Q  V  I  Q  *  H  H  Y  S  N  Q  C  L  I  D  W  S  H  A  S  C </second_frame>
            <third_frame>   D  T  T  V  W  G  K  C  K  G  E  G  C  I  M  A  K  D  E  W  L  Y  G  P  I  A  F  H  C  G  C  C  L  A  F  A  E  G  F  I  E  E  K  R  P  L  Y  A  C  L  A  A  *  *  G  H  A   : G  R  *  S  D  I  D  G  S  C  L  G  G  T  G  *  I  F  C  *  P  N  E  V  H  F  Q  H  I  K  F  C  *  G  D  I  H  S  W  I  S  K  T  L  L  Y  V  R  K  P  A  *  K  N  F  T  *  Y  R  R  Q  R  S  S  T  S  S  Q  F  R  S  K  G  P  N  V  I  F  H  *  N  I  P  D  C  F  P  N  P  L  S  E  P  S  F  R  T  C  *  Y  C  I  S  S  V  R  S  W  N  C  S  F  K  R  S  H  S  K  D  Y  I  T  N  S  R  R  N  R  S  R  P  D  G  C  S  V  N  S  S  C  L  A  *  D  Q  Q  S  S  A  S  A  F  R  K  N  R  I  P   : D  I  C  R  S  R  G  T  T  D  N  R  S  C  N  S  S  T  G  E  E  L  C  V  M  P  A  S  A  R  N  S  Y  P  H  I  V  Y  G  G  R  I  T  S  Y  C  N  R  Y  F  V  S  R  T  G  I  Y  L  W  G  C  R  *  F  S  D  T  T  I  P  I  N  A  *  S  T  G  V  M  H  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73187" stop="73360"/>
                    <exon start="75811" stop="76284"/>
                    <exon start="78235" stop="78477"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTPQFGGSAKAKDALWQRMSGCMDQLHSIVVAVWHLQRVLSKKRDPFTHVLLLDEVMQEGDPILTDRVWEALGKSFANQMKSTFSTSSFVKEIFTLGYPKLFSMLENLLERISRDTDVKGVPPALSSEAKDQMLSSIEIFQTAFLTLCLSRLSELVNTVFPVSGRGTVPSKDHIARIISRIQEEIEAVQMDAQLTLLVLREINKVLLLLSERTEYQISAGPEARQITGPATPAQVKNFALCQHLQEIHTRISSMVAGLPAIATDILSPALGSIYGVAGDSVTPLFQSMLDRLESCIL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="78513" PGL_stop="79364"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78513" e_stop="79364"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="78513" e_stop="79364" e_length="852"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="79364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="79282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78793" stop="79282"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGATGCTGCTATGGACAATAATGCATCACCTTATATGGAAGAGTTGCAGAAGAGCATTCTCCATTTCCGTAGTGAGTTCCTGTCCAGGCTGTTGCCTTCTTCGGCAAATAGCTTGACTACAGGTTCAGAAACTATTTGTACTACCCTCGTGAGGAGCATGGCGTCTAGAGTTTTGATATTTTTCATCAGGCATGCTTCACTCGTTAGACCTCTCTCAGAATCAGGCAAGTTAAGATTAGCCAGGGACATGGCTGAGCTGGAATTGGCAGTTGGCCAAAACTTGTTTCCAGTTGAACAGCTCGGTGCCCCATATCGAGCACTTAGAGCATTTCGTCCTGTTATATTCCTGGAAACATCTCAACTTGCTTCATCCCCACTTCGTCAAGATCTACCACCAAGTGTCATACTGCACCATCTCTACTCACGCGGTCCTGAAGAACTTCAATCACCCTTGCAAAGAAATAGACTTACTCCAATGCAGTATTCACTATGGATGGATTCACAAGGCGAGGACCAGATATGGAAAGGCATCAAAGCTACACTGGACGACTATGCTTCTAAGGTACGTTCAAGAGGAGACAAAGAATTCAGTCCTGTCTATCCTTTAATGATAGAAATTGGTTCTTCTTTATCCGGGAATCGTTAGAGGAACTTTGAGAAATATGCACAGCTCCAATCATCTTTTCTTTGTATACGCCATTCGTCACAATTTTTGTTTGAATAATGTTTTTATAGATTTTGAACTCTCAGAAGACCATATATTATGTTTCATTTCCTTAGCCATGATTTAAATATTTCACATTTGTAGTATTGCCCTGATAGTGCACAGATTCAAAGAGATGGATTATAGTA</gDNA_template>
            <first_frame> G  C  C  Y  G  Q  *  C  I  T  L  Y  G  R  V  A  E  E  H  S  P  F  P  *  *  V  P  V  Q  A  V  A  F  F  G  K  *  L  D  Y  R  F  R  N  Y  L  Y  Y  P  R  E  E  H  G  V  *  S  F  D  I  F  H  Q  A  C  F  T  R  *  T  S  L  R  I  R  Q  V  K  I  S  Q  G  H  G  *  A  G  I  G  S  W  P  K  L  V  S  S  *  T  A  R  C  P  I  S  S  T  *  S  I  S  S  C  Y  I  P  G  N  I  S  T  C  F  I  P  T  S  S  R  S  T  T  K  C  H  T  A  P  S  L  L  T  R  S  *  R  T  S  I  T  L  A  K  K  *  T  Y  S  N  A  V  F  T  M  D  G  F  T  R  R  G  P  D  M  E  R  H  Q  S  Y  T  G  R  L  C  F  *  G  T  F  K  R  R  Q  R  I  Q  S  C  L  S  F  N  D  R  N  W  F  F  F  I  R  E  S  L  E  E  L  *  E  I  C  T  A  P  I  I  F  S  L  Y  T  P  F  V  T  I  F  V  *  I  M  F  L  *  I  L  N  S  Q  K  T  I  Y  Y  V  S  F  P  *  P  *  F  K  Y  F  T  F  V  V  L  P  *  *  C  T  D  S  K  R  W  I  I  V </first_frame>
            <second_frame>  D  A  A  M  D  N  N  A  S  P  Y  M  E  E  L  Q  K  S  I  L  H  F  R  S  E  F  L  S  R  L  L  P  S  S  A  N  S  L  T  T  G  S  E  T  I  C  T  T  L  V  R  S  M  A  S  R  V  L  I  F  F  I  R  H  A  S  L  V  R  P  L  S  E  S  G  K  L  R  L  A  R  D  M  A  E  L  E  L  A  V  G  Q  N  L  F  P  V  E  Q  L  G  A  P  Y  R  A  L  R  A  F  R  P  V  I  F  L  E  T  S  Q  L  A  S  S  P  L  R  Q  D  L  P  P  S  V  I  L  H  H  L  Y  S  R  G  P  E  E  L  Q  S  P  L  Q  R  N  R  L  T  P  M  Q  Y  S  L  W  M  D  S  Q  G  E  D  Q  I  W  K  G  I  K  A  T  L  D  D  Y  A  S  K  V  R  S  R  G  D  K  E  F  S  P  V  Y  P  L  M  I  E  I  G  S  S  L  S  G  N  R  *  R  N  F  E  K  Y  A  Q  L  Q  S  S  F  L  C  I  R  H  S  S  Q  F  L  F  E  *  C  F  Y  R  F  *  T  L  R  R  P  Y  I  M  F  H  F  L  S  H  D  L  N  I  S  H  L  *  Y  C  P  D  S  A  Q  I  Q  R  D  G  L  *   </second_frame>
            <third_frame>   M  L  L  W  T  I  M  H  H  L  I  W  K  S  C  R  R  A  F  S  I  S  V  V  S  S  C  P  G  C  C  L  L  R  Q  I  A  *  L  Q  V  Q  K  L  F  V  L  P  S  *  G  A  W  R  L  E  F  *  Y  F  S  S  G  M  L  H  S  L  D  L  S  Q  N  Q  A  S  *  D  *  P  G  T  W  L  S  W  N  W  Q  L  A  K  T  C  F  Q  L  N  S  S  V  P  H  I  E  H  L  E  H  F  V  L  L  Y  S  W  K  H  L  N  L  L  H  P  H  F  V  K  I  Y  H  Q  V  S  Y  C  T  I  S  T  H  A  V  L  K  N  F  N  H  P  C  K  E  I  D  L  L  Q  C  S  I  H  Y  G  W  I  H  K  A  R  T  R  Y  G  K  A  S  K  L  H  W  T  T  M  L  L  R  Y  V  Q  E  E  T  K  N  S  V  L  S  I  L  *  *  *  K  L  V  L  L  Y  P  G  I  V  R  G  T  L  R  N  M  H  S  S  N  H  L  F  F  V  Y  A  I  R  H  N  F  C  L  N  N  V  F  I  D  F  E  L  S  E  D  H  I  L  C  F  I  S  L  A  M  I  *  I  F  H  I  C  S  I  A  L  I  V  H  R  F  K  E  M  D  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78514" stop="79158"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>642</number_coding_nucleotides>
                  <number_encoded_amino_acids>214</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAAMDNNASPYMEELQKSILHFRSEFLSRLLPSSANSLTTGSETICTTLVRSMASRVLIFFIRHASLVRPLSESGKLRLARDMAELELAVGQNLFPVEQLGAPYRALRAFRPVIFLETSQLASSPLRQDLPPSVILHHLYSRGPEELQSPLQRNRLTPMQYSLWMDSQGEDQIWKGIKATLDDYASKVRSRGDKEFSPVYPLMIEIGSSLSGNR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="83489" PGL_stop="82625"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83489" e_stop="82625"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83489" e_stop="82625" e_length="865"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83489" stop="82625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83488" stop="82948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATCGACAGACAAGAAAACAGGACTGAAGAAAATGCACTAGCTCCAAAATGGTTGATACCTTTCAAGTACAAGTTAGTCGAGACCTTAAATGACGAAAGAGATGGATCTATTTTCGGTGCAATCTTAGAATGGGATAGATCTGCAGCATTGTCTGATTTCATGCTCATCAGACCGAGTGGTGCACCAAGAGCTGTCGTAGCCTTAAGAGGAACGCTTCTCAAAAGCCAAACAATGAGAAGGGATATCGAAGATGATCTCCGTTTCTTAGCTTGGGAAAGTCTGAAAGGTTCTGTTAGATTCAATGCAGCCCTCAATGCGCTAAAATCAATTGCCACCAAATATGGCAGCAACAATGTGTGTATCGTAGGCCACTCACTCGGAGCTGGATTTGCTCTCCAAGTAGGAAAAGCGTTAGCAAAAGAAGGCATACATGTAGAAGCACATTTGTTCAATCCACCCTCAGTTTCACTTGCTATGAGCTTAAGAAACATAGGCGAAAAAGCTGGTGTCGCATGGAAAAGGCTCAAATCAATGCTCCCTTCGAATCAAGATACCCAAACTAGCAACGAGGGAAATGATACTCAATCATTTCGGATAGGCCTAAAACCATGGGTGCCACATTTGTACATCAACAATAGCGATTACATATGTTGCTCTTACACTGATCAAGAAAAGAATGGACTACGAGATAACCACGATGAGTGTGATAAAGAGAATGCAACACCAAGAAATGGACAACAAGTTGTTGCTGCTGCAAAGCTTTTTCTGTCATCTAACAAAGGGAAACAAAAGTTTCTTGAGGCACATGGATTGGAGCAATGGTGGTCTGATAATTTGGAACTACAAATGGCTATTAGTAACA</gDNA_template>
            <first_frame> E  I  D  R  Q  E  N  R  T  E  E  N  A  L  A  P  K  W  L  I  P  F  K  Y  K  L  V  E  T  L  N  D  E  R  D  G  S  I  F  G  A  I  L  E  W  D  R  S  A  A  L  S  D  F  M  L  I  R  P  S  G  A  P  R  A  V  V  A  L  R  G  T  L  L  K  S  Q  T  M  R  R  D  I  E  D  D  L  R  F  L  A  W  E  S  L  K  G  S  V  R  F  N  A  A  L  N  A  L  K  S  I  A  T  K  Y  G  S  N  N  V  C  I  V  G  H  S  L  G  A  G  F  A  L  Q  V  G  K  A  L  A  K  E  G  I  H  V  E  A  H  L  F  N  P  P  S  V  S  L  A  M  S  L  R  N  I  G  E  K  A  G  V  A  W  K  R  L  K  S  M  L  P  S  N  Q  D  T  Q  T  S  N  E  G  N  D  T  Q  S  F  R  I  G  L  K  P  W  V  P  H  L  Y  I  N  N  S  D  Y  I  C  C  S  Y  T  D  Q  E  K  N  G  L  R  D  N  H  D  E  C  D  K  E  N  A  T  P  R  N  G  Q  Q  V  V  A  A  A  K  L  F  L  S  S  N  K  G  K  Q  K  F  L  E  A  H  G  L  E  Q  W  W  S  D  N  L  E  L  Q  M  A  I  S  N  </first_frame>
            <second_frame>  R  S  T  D  K  K  T  G  L  K  K  M  H  *  L  Q  N  G  *  Y  L  S  S  T  S  *  S  R  P  *  M  T  K  E  M  D  L  F  S  V  Q  S  *  N  G  I  D  L  Q  H  C  L  I  S  C  S  S  D  R  V  V  H  Q  E  L  S  *  P  *  E  E  R  F  S  K  A  K  Q  *  E  G  I  S  K  M  I  S  V  S  *  L  G  K  V  *  K  V  L  L  D  S  M  Q  P  S  M  R  *  N  Q  L  P  P  N  M  A  A  T  M  C  V  S  *  A  T  H  S  E  L  D  L  L  S  K  *  E  K  R  *  Q  K  K  A  Y  M  *  K  H  I  C  S  I  H  P  Q  F  H  L  L  *  A  *  E  T  *  A  K  K  L  V  S  H  G  K  G  S  N  Q  C  S  L  R  I  K  I  P  K  L  A  T  R  E  M  I  L  N  H  F  G  *  A  *  N  H  G  C  H  I  C  T  S  T  I  A  I  T  Y  V  A  L  T  L  I  K  K  R  M  D  Y  E  I  T  T  M  S  V  I  K  R  M  Q  H  Q  E  M  D  N  K  L  L  L  L  Q  S  F  F  C  H  L  T  K  G  N  K  S  F  L  R  H  M  D  W  S  N  G  G  L  I  I  W  N  Y  K  W  L  L  V  T </second_frame>
            <third_frame>   D  R  Q  T  R  K  Q  D  *  R  K  C  T  S  S  K  M  V  D  T  F  Q  V  Q  V  S  R  D  L  K  *  R  K  R  W  I  Y  F  R  C  N  L  R  M  G  *  I  C  S  I  V  *  F  H  A  H  Q  T  E  W  C  T  K  S  C  R  S  L  K  R  N  A  S  Q  K  P  N  N  E  K  G  Y  R  R  *  S  P  F  L  S  L  G  K  S  E  R  F  C  *  I  Q  C  S  P  Q  C  A  K  I  N  C  H  Q  I  W  Q  Q  Q  C  V  Y  R  R  P  L  T  R  S  W  I  C  S  P  S  R  K  S  V  S  K  R  R  H  T  C  R  S  T  F  V  Q  S  T  L  S  F  T  C  Y  E  L  K  K  H  R  R  K  S  W  C  R  M  E  K  A  Q  I  N  A  P  F  E  S  R  Y  P  N  *  Q  R  G  K  *  Y  S  I  I  S  D  R  P  K  T  M  G  A  T  F  V  H  Q  Q  *  R  L  H  M  L  L  L  H  *  S  R  K  E  W  T  T  R  *  P  R  *  V  *  *  R  E  C  N  T  K  K  W  T  T  S  C  C  C  C  K  A  F  S  V  I  *  Q  R  E  T  K  V  S  *  G  T  W  I  G  A  M  V  V  *  *  F  G  T  T  N  G  Y  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83489" stop="82626"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>864</number_coding_nucleotides>
                  <number_encoded_amino_acids>288</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIDRQENRTEENALAPKWLIPFKYKLVETLNDERDGSIFGAILEWDRSAALSDFMLIRPSGAPRAVVALRGTLLKSQTMRRDIEDDLRFLAWESLKGSVRFNAALNALKSIATKYGSNNVCIVGHSLGAGFALQVGKALAKEGIHVEAHLFNPPSVSLAMSLRNIGEKAGVAWKRLKSMLPSNQDTQTSNEGNDTQSFRIGLKPWVPHLYINNSDYICCSYTDQEKNGLRDNHDECDKENATPRNGQQVVAAAKLFLSSNKGKQKFLEAHGLEQWWSDNLELQMAISN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="86089" PGL_stop="85700"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86089" e_stop="85700"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="86089" e_stop="85700" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86089" stop="85700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86087" stop="85700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGGGTTGTTTGTAGATGTCGAAAAGGGGAGTAGAAGAGATGAGGAATGAAATGGTGGCAGCTGAAGGAGAGATAAAAATGGAGAATTTTGAAAAGGGTGCTGTTGAATCTCATCCTTATGCATTTCATGTTTCTGGACCAAGAAATGTTGCTTCTCCAAATTGGAGAGATCTTATTAATTCAAGTTGGTTAGTGTTCTTTTCTTGATTTGCTGTTAAAAGTTTCAAGCTTTTATTAGTCTTGTAGCTGATGATGTAGAGTGTGCTTGTTTTTCAGTGTTTGTGAATTTTGAGTTGTGGATTTAAGACCCTTTTTCTTGATTTCAGATTTCGATTTGTTAAGGTTTAACTGATATCTAGCTAAAGCTAATTCTAGTTTGTTAGTGTTCT</gDNA_template>
            <first_frame> S  G  L  F  V  D  V  E  K  G  S  R  R  D  E  E  *  N  G  G  S  *  R  R  D  K  N  G  E  F  *  K  G  C  C  *  I  S  S  L  C  I  S  C  F  W  T  K  K  C  C  F  S  K  L  E  R  S  Y  *  F  K  L  V  S  V  L  F  L  I  C  C  *  K  F  Q  A  F  I  S  L  V  A  D  D  V  E  C  A  C  F  S  V  F  V  N  F  E  L  W  I  *  D  P  F  S  *  F  Q  I  S  I  C  *  G  L  T  D  I  *  L  K  L  I  L  V  C  *  C  S </first_frame>
            <second_frame>  V  G  C  L  *  M  S  K  R  G  V  E  E  M  R  N  E  M  V  A  A  E  G  E  I  K  M  E  N  F  E  K  G  A  V  E  S  H  P  Y  A  F  H  V  S  G  P  R  N  V  A  S  P  N  W  R  D  L  I  N  S  S  W  L  V  F  F  S  *  F  A  V  K  S  F  K  L  L  L  V  L  *  L  M  M  *  S  V  L  V  F  Q  C  L  *  I  L  S  C  G  F  K  T  L  F  L  D  F  R  F  R  F  V  K  V  *  L  I  S  S  *  S  *  F  *  F  V  S  V   </second_frame>
            <third_frame>   W  V  V  C  R  C  R  K  G  E  *  K  R  *  G  M  K  W  W  Q  L  K  E  R  *  K  W  R  I  L  K  R  V  L  L  N  L  I  L  M  H  F  M  F  L  D  Q  E  M  L  L  L  Q  I  G  E  I  L  L  I  Q  V  G  *  C  S  F  L  D  L  L  L  K  V  S  S  F  Y  *  S  C  S  *  *  C  R  V  C  L  F  F  S  V  C  E  F  *  V  V  D  L  R  P  F  F  L  I  S  D  F  D  L  L  R  F  N  *  Y  L  A  K  A  N  S  S  L  L  V  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="87976" PGL_stop="92816"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87981" e_stop="88097"/>
            <exon e_start="90144" e_stop="90283"/>
            <exon e_start="90513" e_stop="90595"/>
            <exon e_start="91234" e_stop="91438"/>
            <exon e_start="91555" e_stop="91623"/>
            <exon e_start="92482" e_stop="92777"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87981" e_stop="88097" e_length="117"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.837">
            <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90144" e_stop="90283" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90513" e_stop="90595" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.698" acc_prob="0.854">
            <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91234" e_stop="91438" e_length="205"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91555" e_stop="91623" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="92482" e_stop="92777" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87981" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87983" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91438"/>
              <exon start="91555" stop="91581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87987" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91438"/>
              <exon start="91555" stop="91621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203334" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87993" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91438"/>
              <exon start="91555" stop="91623"/>
              <exon start="92482" stop="92761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88010" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91438"/>
              <exon start="91555" stop="91623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="91438"/>
              <exon start="91555" stop="91623"/>
              <exon start="92482" stop="92777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG : GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG : GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG : GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG : GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG : TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTT</gDNA_template>
            <first_frame> S  P  A  N  F  F  N  C  L  S  I  F  R  S  P  L  I  H  R  R  I  G  K  S  C  R  T  H  I  S  S  S  I  L  S  S  A  I  L  :  E  L  E  S  H  V  Y  F  C  N  L  R  T  N  G  F  N  Q  F  M  T  *  P  S  G  L  N  L  G  L  E  *  S  Q  S  T  T  N  Q  L  N  Y  R  S  G  T  R :   L  V  K  N  H  S  D  P  S  Q  G  H  I  T  E  G  L  R  A  H  Y  L  F  M  I  L  Q   : G  G  K  L  L  I  T  L  L  V  G  *  K  M  Q  D  S  M  Q  M  Q  T  *  P  *  C  *  L  G  T  S  V  I  W  L  I  E  G  L  *  A  Q  K  K  V  S  S  L  P  K  K  T  D  *  Y  S  W  R  P  Q  L  K  Q  L  R  M  L  K  R :   L  S  S  K  Q  P  Q  Q  S  I  R  K  Y  K  M  E  C  L  M  Y  R  M  S :   L  M  V  *  K  L  D  M  E  A  F  Q  D  H  Q  V  E  E  M  E  L  L  L  K  E  G  V  V  V  L  E  T  *  K  S  F  F  K  L  D  H  V  L  I  I  S  M  P  A  I  I  T  G  L  S  F  L  S  Y  L  F  *  *  C  Y  L  C  K  N  K  Q  N  S  V  N  S  G  Q  S  I  F  M  C  A  R  V  *  *  L  A  F  Q  N  V  N  R  I  P  </first_frame>
            <second_frame>  H  L  Q  I  F  S  T  V  S  L  Y  S  D  L  R  *  S  T  A  V  S  V  N  H  V  V  R  I  S  L  Q  V  Y  Y  H  R  R  Y  W :   S  W  K  V  M  S  T  F  A  I  Y  G  Q  T  V  S  T  S  S  *  P  D  H  R  G  *  I  W  G  S  N  D  H  N  R  Q  Q  T  N  *  T  T  D  L  G  H   : G  W  S  R  I  I  Q  I  H  H  K  V  I  L  Q  R  G  C  G  R  I  T  C  L  *  Y  Y  K  :  E  G  N  F  *  S  P  C  *  L  V  R  R  C  K  T  A  C  K  C  K  H  D  H  N  A  D  W  E  Q  V  *  S  G  S  *  K  G  C  K  H  R  R  R  *  A  V  C  Q  R  K  R  I  D  I  H  G  G  L  S  *  N  S  S  E  C  *  R   : G  F  H  Q  N  S  L  N  N  L  *  E  N  T  R  W  S  V  *  C  I  E  *   : V  L  W  Y  K  S  W  I  W  R  H  S  R  T  I  R  W  K  R  W  S  C  F  S  R  R  G  L  L  Y  L  K  L  E  N  H  S  S  N  L  I  M  F  S  S  S  L  C  Q  P  S  S  R  V  F  H  S  Y  L  I  C  F  N  D  V  T  C  A  K  I  S  K  I  Q  *  I  V  D  S  P  S  L  C  A  P  V  Y  N  S  W  H  F  K  M  *  I  E  F  L </second_frame>
            <third_frame>   T  C  K  F  F  Q  L  S  L  Y  I  Q  I  S  V  D  P  P  P  Y  R  *  I  M  S  Y  A  Y  L  F  K  Y  I  I  I  G  D  T   : G  V  G  K  S  C  L  L  L  Q  F  T  D  K  R  F  Q  P  V  H  D  L  T  I  G  V  E  F  G  A  R  M  I  T  I  D  N  K  P  I  K  L  Q  I  W  D  T  :  A  G  Q  E  S  F  R  S  I  T  R  S  Y  Y  R  G  A  A  G  A  L  L  V  Y  D  I  T  R :   R  E  T  F  N  H  L  A  S  W  L  E  D  A  R  Q  H  A  N  A  N  M  T  I  M  L  I  G  N  K  C  D  L  A  H  R  R  A  V  S  T  E  E  G  E  Q  F  A  K  E  N  G  L  I  F  M  E  A  S  A  K  T  A  Q  N  V  E  E  :  A  F  I  K  T  A  S  T  I  Y  K  K  I  Q  D  G  V  F  D  V  S  N  E  :  S  Y  G  I  K  V  G  Y  G  G  I  P  G  P  S  G  G  R  D  G  A  A  S  Q  G  G  G  C  C  T  *  N  L  K  I  I  L  Q  T  *  S  C  S  H  H  L  Y  A  S  H  H  H  G  S  F  I  L  I  L  F  V  L  M  M  L  P  V  Q  K  *  A  K  F  S  K  *  W  T  V  H  L  Y  V  R  P  C  I  I  V  G  I  S  K  C  E  *  N  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88049" stop="88097"/>
                    <exon start="90144" stop="90283"/>
                    <exon start="90513" stop="90595"/>
                    <exon start="91234" stop="91438"/>
                    <exon start="91555" stop="91623"/>
                    <exon start="92482" stop="92574"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>636</number_coding_nucleotides>
                  <number_encoded_amino_acids>212</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTASTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGAASQGGGCCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87976" e_stop="88097"/>
            <exon e_start="90144" e_stop="90283"/>
            <exon e_start="90513" e_stop="90595"/>
            <exon e_start="91261" e_stop="91438"/>
            <exon e_start="91555" e_stop="91623"/>
            <exon e_start="92482" e_stop="92816"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.837" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.698" acc_prob="0.250" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87976" e_stop="88097" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.837">
            <gDNA_intron_boundary i_start="88098" i_stop="90143" i_length="2046"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90144" e_stop="90283" e_length="140"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90513" e_stop="90595" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.698" acc_prob="0.250">
            <gDNA_intron_boundary i_start="90596" i_stop="91260" i_length="665"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91261" e_stop="91438" e_length="178"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.994">
            <gDNA_intron_boundary i_start="91439" i_stop="91554" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91555" e_stop="91623" e_length="69"/>
          </exon>
          <intron i_serial="5" don_prob="0.942" acc_prob="0.998">
            <gDNA_intron_boundary i_start="91624" i_stop="92481" i_length="858"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="92482" e_stop="92816" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87976" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91261" stop="91438"/>
              <exon start="91555" stop="91623"/>
              <exon start="92482" stop="92639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87977" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91261" stop="91401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88071" stop="88097"/>
              <exon start="90144" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91261" stop="91438"/>
              <exon start="91555" stop="91623"/>
              <exon start="92482" stop="92816"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91335" stop="91438"/>
              <exon start="91555" stop="91623"/>
              <exon start="92482" stop="92777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203335" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAGCTCACCTGCAAATTTTTTCAACTGTCTCTCTATATTCAGATCTCCGTTGATCCACCGCCGTATCGGTAAATCATGTCGTACGCATATCTCTTCAAGTATATTATCATCGGCGATACTG : GAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG : GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG : TTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCTGGCTCATAGAAGGGCTGTAAGCACAGAAGAAGGTGAGCAGTTTGCCAAAGAAAACGGATTGATATTCATGGAGGCCTCAGCTAAAACAGCTCAGAATGTTGAAGAG : GCTTTCATCAAAACAGCCTCAACAATCTATAAGAAAATACAAGATGGAGTGTTTGATGTATCGAATGAG : TCTTATGGTATAAAAGTTGGATATGGAGGCATTCCAGGACCATCAGGTGGAAGAGATGGAGCTGCTTCTCAAGGAGGGGGTTGTTGTACTTGAAACTTGAAAATCATTCTTCAAACTTGATCATGTTCTCATCATCTCTATGCCAGCCATCATCACGGGTCTTTCATTCTTATCTTATTTGTTTTAATGATGTTACCTGTGCAAAAATAAGCAAAATTCAGTAAATAGTGGACAGTCCATCTTTATGTGCGCCCGTGTATAATAGTTGGCATTTCAAAATGTGAATAGAATTCCTTATATCTTGTGTGCTTGTGTGAATGAGAAATATTGAACTA</gDNA_template>
            <first_frame> P  A  H  L  Q  I  F  S  T  V  S  L  Y  S  D  L  R  *  S  T  A  V  S  V  N  H  V  V  R  I  S  L  Q  V  Y  Y  H  R  R  Y  W :   S  W  K  V  M  S  T  F  A  I  Y  G  Q  T  V  S  T  S  S  *  P  D  H  R  G  *  I  W  G  S  N  D  H  N  R  Q  Q  T  N  *  T  T  D  L  G  H   : G  W  S  R  I  I  Q  I  H  H  K  V  I  L  Q  R  G  C  G  R  I  T  C  L  *  Y  Y  K  :  L  V  R  R  C  K  T  A  C  K  C  K  H  D  H  N  A  D  W  E  Q  V  *  S  G  S  *  K  G  C  K  H  R  R  R  *  A  V  C  Q  R  K  R  I  D  I  H  G  G  L  S  *  N  S  S  E  C  *  R   : G  F  H  Q  N  S  L  N  N  L  *  E  N  T  R  W  S  V  *  C  I  E  *   : V  L  W  Y  K  S  W  I  W  R  H  S  R  T  I  R  W  K  R  W  S  C  F  S  R  R  G  L  L  Y  L  K  L  E  N  H  S  S  N  L  I  M  F  S  S  S  L  C  Q  P  S  S  R  V  F  H  S  Y  L  I  C  F  N  D  V  T  C  A  K  I  S  K  I  Q  *  I  V  D  S  P  S  L  C  A  P  V  Y  N  S  W  H  F  K  M  *  I  E  F  L  I  S  C  V  L  V  *  M  R  N  I  E  L </first_frame>
            <second_frame>  Q  L  T  C  K  F  F  Q  L  S  L  Y  I  Q  I  S  V  D  P  P  P  Y  R  *  I  M  S  Y  A  Y  L  F  K  Y  I  I  I  G  D  T   : G  V  G  K  S  C  L  L  L  Q  F  T  D  K  R  F  Q  P  V  H  D  L  T  I  G  V  E  F  G  A  R  M  I  T  I  D  N  K  P  I  K  L  Q  I  W  D  T  :  A  G  Q  E  S  F  R  S  I  T  R  S  Y  Y  R  G  A  A  G  A  L  L  V  Y  D  I  T  S :   W  L  E  D  A  R  Q  H  A  N  A  N  M  T  I  M  L  I  G  N  K  C  D  L  A  H  R  R  A  V  S  T  E  E  G  E  Q  F  A  K  E  N  G  L  I  F  M  E  A  S  A  K  T  A  Q  N  V  E  E  :  A  F  I  K  T  A  S  T  I  Y  K  K  I  Q  D  G  V  F  D  V  S  N  E  :  S  Y  G  I  K  V  G  Y  G  G  I  P  G  P  S  G  G  R  D  G  A  A  S  Q  G  G  G  C  C  T  *  N  L  K  I  I  L  Q  T  *  S  C  S  H  H  L  Y  A  S  H  H  H  G  S  F  I  L  I  L  F  V  L  M  M  L  P  V  Q  K  *  A  K  F  S  K  *  W  T  V  H  L  Y  V  R  P  C  I  I  V  G  I  S  K  C  E  *  N  S  L  Y  L  V  C  L  C  E  *  E  I  L  N   </second_frame>
            <third_frame>   S  S  P  A  N  F  F  N  C  L  S  I  F  R  S  P  L  I  H  R  R  I  G  K  S  C  R  T  H  I  S  S  S  I  L  S  S  A  I  L  :  E  L  E  S  H  V  Y  F  C  N  L  R  T  N  G  F  N  Q  F  M  T  *  P  S  G  L  N  L  G  L  E  *  S  Q  S  T  T  N  Q  L  N  Y  R  S  G  T  R :   L  V  K  N  H  S  D  P  S  Q  G  H  I  T  E  G  L  R  A  H  Y  L  F  M  I  L  Q   : V  G  *  K  M  Q  D  S  M  Q  M  Q  T  *  P  *  C  *  L  G  T  S  V  I  W  L  I  E  G  L  *  A  Q  K  K  V  S  S  L  P  K  K  T  D  *  Y  S  W  R  P  Q  L  K  Q  L  R  M  L  K  R :   L  S  S  K  Q  P  Q  Q  S  I  R  K  Y  K  M  E  C  L  M  Y  R  M  S :   L  M  V  *  K  L  D  M  E  A  F  Q  D  H  Q  V  E  E  M  E  L  L  L  K  E  G  V  V  V  L  E  T  *  K  S  F  F  K  L  D  H  V  L  I  I  S  M  P  A  I  I  T  G  L  S  F  L  S  Y  L  F  *  *  C  Y  L  C  K  N  K  Q  N  S  V  N  S  G  Q  S  I  F  M  C  A  R  V  *  *  L  A  F  Q  N  V  N  R  I  P  Y  I  L  C  A  C  V  N  E  K  Y  *  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88049" stop="88097"/>
                    <exon start="90144" stop="90283"/>
                    <exon start="90513" stop="90595"/>
                    <exon start="91261" stop="91438"/>
                    <exon start="91555" stop="91623"/>
                    <exon start="92482" stop="92574"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITSWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTASTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGAASQGGGCCT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="90134" e_stop="90283"/>
            <exon e_start="90513" e_stop="90595"/>
            <exon e_start="91234" e_stop="91332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="0.953"/>
          <exon-intron don_prob="0.698" acc_prob="0.854" e_score="0.988"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="90134" e_stop="90283" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90284" i_stop="90512" i_length="229"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="90513" e_stop="90595" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.698" acc_prob="0.854">
            <gDNA_intron_boundary i_start="90596" i_stop="91233" i_length="638"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="91234" e_stop="91332" e_length="99"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90134" stop="90283"/>
              <exon start="90513" stop="90595"/>
              <exon start="91234" stop="91332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249370" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTATACAGGAGTTGGAAAGTCATGTCTACTTTTGCAATTTACGGACAAACGGTTTCAACCAGTTCATGACCTGACCATCGGGGTTGAATTTGGGGCTCGAATGATCACAATCGACAACAAACCAATTAAACTACAGATCTGGGACACG : GCTGGTCAAGAATCATTCAGATCCATCACAAGGTCATATTACAGAGGGGCTGCGGGCGCATTACTTGTTTATGATATTACAAG : GAGGGAAACTTTTAATCACCTTGCTAGTTGGTTAGAAGATGCAAGACAGCATGCAAATGCAAACATGACCATAATGCTGATTGGGAACAAGTGTGATCT</gDNA_template>
            <first_frame> L  Y  T  G  V  G  K  S  C  L  L  L  Q  F  T  D  K  R  F  Q  P  V  H  D  L  T  I  G  V  E  F  G  A  R  M  I  T  I  D  N  K  P  I  K  L  Q  I  W  D  T  :  A  G  Q  E  S  F  R  S  I  T  R  S  Y  Y  R  G  A  A  G  A  L  L  V  Y  D  I  T  R :   R  E  T  F  N  H  L  A  S  W  L  E  D  A  R  Q  H  A  N  A  N  M  T  I  M  L  I  G  N  K  C  D   </first_frame>
            <second_frame>  S  I  Q  E  L  E  S  H  V  Y  F  C  N  L  R  T  N  G  F  N  Q  F  M  T  *  P  S  G  L  N  L  G  L  E  *  S  Q  S  T  T  N  Q  L  N  Y  R  S  G  T  R :   L  V  K  N  H  S  D  P  S  Q  G  H  I  T  E  G  L  R  A  H  Y  L  F  M  I  L  Q   : G  G  K  L  L  I  T  L  L  V  G  *  K  M  Q  D  S  M  Q  M  Q  T  *  P  *  C  *  L  G  T  S  V  I  </second_frame>
            <third_frame>   L  Y  R  S  W  K  V  M  S  T  F  A  I  Y  G  Q  T  V  S  T  S  S  *  P  D  H  R  G  *  I  W  G  S  N  D  H  N  R  Q  Q  T  N  *  T  T  D  L  G  H   : G  W  S  R  I  I  Q  I  H  H  K  V  I  L  Q  R  G  C  G  R  I  T  C  L  *  Y  Y  K  :  E  G  N  F  *  S  P  C  *  L  V  R  R  C  K  T  A  C  K  C  K  H  D  H  N  A  D  W  E  Q  V  *  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="16" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90134" stop="90283"/>
                    <exon start="90513" stop="90595"/>
                    <exon start="91234" stop="91330"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="95941" PGL_stop="92285"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95941" e_stop="95680"/>
            <exon e_start="95346" e_stop="95285"/>
            <exon e_start="94722" e_stop="93919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95941" e_stop="95680" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95346" e_stop="95285" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="94722" e_stop="93919" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95941" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95940" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95936" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95933" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95926" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95905" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95882" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95882" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740026" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95880" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95880" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95878" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95877" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95873" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95868" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95868" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296254" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95867" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95862" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710145" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95862" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95860" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95860" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95860" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95859" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="93989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95859" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95859" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95859" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729042" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95859" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95858" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726675" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95858" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95858" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95857" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95856" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95856" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285698" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="93996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700156" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731796" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95853" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95852" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697582" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95852" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95852" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95852" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95852" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="93937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95850" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95849" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="93998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736779" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95849" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95849" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95849" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94424"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94633" stop="94199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94632" stop="93977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94629" stop="93931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94616" stop="94212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94606" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94587" stop="94346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94554" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94539" stop="94031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94475" stop="94104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94461" stop="93955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94436" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94436" stop="93959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94430" stop="93933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94423" stop="94005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94420" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94415" stop="93930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94403" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94393" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94387" stop="93950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94365" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94364" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94344" stop="93941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94319" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94313" stop="94019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94271" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG : CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG : TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</gDNA_template>
            <first_frame> K  Y  F  V  P  L  F  A  T  F  C  I  *  F  I  L  V  E  L  S  V  Y  I  I  L  L  L  K  K  T  K  T  N  K  K  E  K  R  N  Y  G  N  S  S  I  D  L  F  I  I  N  *  H  F  S  *  S  C  K  T  N  Y  W  I  K  N  F  T  I  C  Y  *  K  S  F  F  C  C  K  G  C  F  H  S  T  S  Q   : A  R  S  K  *  A  T  L  V  C  I  Q  T  K  P  F  I  L  G  W  K  :  S  S  R  *  L  W  F  *  S  L  G  T  L  G  P  *  R  H  R  R  F  H  R  A  E  M  A  S  I  W  R  G  H  Q  W  S  V  R  H  V  R  S  C  R  G  N  S  T  R  D  S  W  K  S  W  S  H  P  T  R  N  S  T  C  M  V  P  N  W  C  Y  P  T  S  R  N  I  Q  L  L  G  *  Q  L  H  I  V  C  S  *  N  G  T  H  G  L  C  *  A  Q  E  I  P  R  L  G  Q  T  W  F  N  G  E  T  I  L  L  G  S  *  K  G  F  G  W  V  R  *  S  S  I  P  R  W  P  I  V  *  S  T  W  I  W  K  R  *  K  V  Y  E  G  I  E  A  *  G  D  *  E  R  K  T  C  Y  V  G  C  F  G  I  L  Y  S  S  I  G  Y  W  C  W  T  L  P  K  P  S  *  S  F  G  *  S  S  K  Q  Q  C  L  D  *  S  Q  V  S  L  N  *  V  E  Q  K  Q  S  T  L  S  S  K  S  P  P  L  P  F  S  Y  V  *  C  N  I  M  C  R  *  Y  F  S  S  H  L  *  C  *  N  K  D  M  S  F  L  K  G  L  I  Y  I  F  *  R  K  S  S  S  I  L  I  L </first_frame>
            <second_frame>  N  T  L  S  P  Y  L  P  P  F  V  F  N  L  F  L  W  S  *  V  F  I  L  F  F  F  S  K  K  Q  K  Q  T  K  K  R  R  E  I  M  A  T  Q  A  L  I  S  S  S  S  I  S  T  S  A  E  A  A  R  Q  I  I  G  S  R  I  S  Q  S  V  T  R  K  A  S  F  V  V  R  A  A  S  T  P  P  V  K  :  Q  G  A  N  R  Q  L  W  F  A  S  K  Q  S  L  S  Y  L  D  G  S :   L  P  G  D  F  G  F  D  P  L  G  L  S  D  P  E  G  T  G  G  F  I  E  P  K  W  L  A  Y  G  E  V  I  N  G  R  F  A  M  L  G  A  A  G  A  I  A  P  E  I  L  G  K  A  G  L  I  P  Q  E  T  A  L  A  W  F  Q  T  G  V  I  P  P  A  G  T  Y  N  Y  W  A  D  N  Y  T  L  F  V  L  E  M  A  L  M  G  F  A  E  H  R  R  F  Q  D  W  A  K  P  G  S  M  G  K  Q  Y  F  L  G  L  E  K  G  L  G  G  S  G  D  P  A  Y  P  G  G  P  L  F  N  P  L  G  F  G  K  D  E  K  S  M  K  E  L  K  L  K  E  I  K  N  G  R  L  A  M  L  A  V  L  G  Y  F  I  Q  A  L  V  T  G  V  G  P  Y  Q  N  L  L  D  H  L  A  D  P  V  N  N  N  V  L  T  S  L  K  F  H  *  T  K  *  S  K  S  N  P  L  F  L  L  N  L  P  P  S  P  S  L  M  C  N  V  T  L  C  A  D  N  I  F  H  L  I  C  N  A  K  T  R  T  C  H  F  *  K  A  *  Y  I  F  F  R  G  N  H  L  V  F  *  S   </second_frame>
            <third_frame>   I  L  C  P  L  I  C  H  L  L  Y  L  I  Y  S  C  G  A  K  C  L  Y  Y  S  S  S  Q  K  N  K  N  K  Q  K  R  E  E  K  L  W  Q  L  K  H  *  S  L  H  H  Q  L  A  L  Q  L  K  L  Q  D  K  L  L  D  Q  E  F  H  N  L  L  L  E  K  L  L  L  L  *  G  L  L  P  L  H  Q  S  S :   K  E  Q  I  G  N  S  G  L  H  P  N  K  A  F  H  T  W  M  E   : V  F  P  V  T  L  V  L  I  P  W  D  S  R  T  L  K  A  Q  E  V  S  S  S  R  N  G  *  H  M  A  R  S  S  M  V  G  S  P  C  *  E  L  Q  G  Q  *  H  Q  R  F  L  E  K  L  V  S  S  H  K  K  Q  H  L  H  G  S  K  L  V  L  S  H  Q  Q  E  H  T  T  T  G  L  T  I  T  H  C  L  F  L  K  W  H  S  W  A  L  L  S  T  G  D  S  K  I  G  P  N  L  V  Q  W  G  N  N  T  S  W  V  L  K  R  V  W  V  G  Q  V  I  Q  H  T  Q  V  A  H  C  L  I  H  L  D  L  E  K  M  K  S  L  *  R  N  *  S  L  R  R  L  R  T  E  D  L  L  C  W  L  F  W  D  T  L  F  K  H  W  L  L  V  L  D  L  T  K  T  F  L  I  I  W  L  I  Q  *  T  T  M  S  *  L  V  S  S  F  T  K  L  S  R  A  K  A  I  H  S  F  F  *  I  S  P  P  P  L  L  L  C  V  M  *  H  Y  V  Q  I  I  F  F  I  S  S  V  M  L  K  Q  G  H  V  I  F  K  R  P  D  I  Y  F  L  E  E  I  I  *  Y  S  D  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95883" stop="95680"/>
                    <exon start="95346" stop="95285"/>
                    <exon start="94722" stop="94107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFILFFFSKKQKQTKKRREIMATQALISSSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAVLGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95941" e_stop="95680"/>
            <exon e_start="95346" e_stop="95285"/>
            <exon e_start="94722" e_stop="93966"/>
            <exon e_start="93667" e_stop="93648"/>
            <exon e_start="92677" e_stop="92598"/>
            <exon e_start="92311" e_stop="92285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.600" acc_prob="0.995" e_score="0.750"/>
          <exon-intron don_prob="0.000" acc_prob="0.908" e_score="0.475"/>
          <exon-only e_score="0.519"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95941" e_stop="95680" e_length="262"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95679" i_stop="95347" i_length="333"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95346" e_stop="95285" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="94722" e_stop="93966" e_length="757"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="93965" i_stop="93668" i_length="298"/>
          </intron>
          <exon e_serial="4" e_score="0.750">
            <gDNA_exon_boundary e_start="93667" e_stop="93648" e_length="20"/>
          </exon>
          <intron i_serial="4" don_prob="0.600" acc_prob="0.995">
            <gDNA_intron_boundary i_start="93647" i_stop="92678" i_length="970"/>
          </intron>
          <exon e_serial="5" e_score="0.475">
            <gDNA_exon_boundary e_start="92677" e_stop="92598" e_length="80"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.908">
            <gDNA_intron_boundary i_start="92597" i_stop="92312" i_length="286"/>
          </intron>
          <exon e_serial="6" e_score="0.519">
            <gDNA_exon_boundary e_start="92311" e_stop="92285" e_length="27"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95941" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95940" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95936" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95933" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216595" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95927" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95926" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299031" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95905" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95882" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729323" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E729543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95831" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95831" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95831" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94125"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95831" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94158"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95830" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95830" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95830" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95829" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95829" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95828" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284994" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95828" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95828" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95828" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95828" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95827" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94271"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95827" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95826" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95826" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95826" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95819" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95816" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95815" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95814" stop="95680"/>
              <exon start="95346" stop="95285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95813" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95812" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95809" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95799" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95799" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94377"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95782" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95742" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95726" stop="95680"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95341" stop="95285"/>
              <exon start="94722" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95341" stop="95285"/>
              <exon start="94722" stop="94085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95340" stop="95285"/>
              <exon start="94722" stop="93983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95338" stop="95285"/>
              <exon start="94722" stop="93980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95338" stop="95285"/>
              <exon start="94722" stop="94114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95285"/>
              <exon start="94722" stop="94328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94633" stop="93983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94633" stop="94199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94632" stop="93977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94616" stop="94212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94587" stop="94346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94539" stop="94031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94475" stop="94104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94423" stop="94005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94420" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94387" stop="93966"/>
              <exon start="93667" stop="93648"/>
              <exon start="92677" stop="92598"/>
              <exon start="92311" stop="92285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735057" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94319" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94313" stop="94019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATACTTTGTCCCCTTATTTGCCACCTTTTGTATTTAATTTATTCTTGTGGAGCTAAGTGTTTATATTATTCTTCTTCTCAAAAAAACAAAAACAAACAAAAAAGAGAAGAGAAATTATGGCAACTCAAGCATTGATCTCTTCATCATCAATTAGCACTTCAGCTGAAGCTGCAAGACAAATTATTGGATCAAGAATTTCACAATCTGTTACTAGAAAAGCTTCTTTTGTTGTAAGGGCTGCTTCCACTCCACCAGTCAAG : CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG : TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAG : AAAAAGTAAATAGCAAAAAA : GTAACATCATTAAAACAAATAAGATAAGAATGAAAGACCCGTGATGATGGCTGGCATAGAGATGATGAGAACATGATCAA : GGGATCAAAAGTTGGATGAATGAAACA</gDNA_template>
            <first_frame> K  Y  F  V  P  L  F  A  T  F  C  I  *  F  I  L  V  E  L  S  V  Y  I  I  L  L  L  K  K  T  K  T  N  K  K  E  K  R  N  Y  G  N  S  S  I  D  L  F  I  I  N  *  H  F  S  *  S  C  K  T  N  Y  W  I  K  N  F  T  I  C  Y  *  K  S  F  F  C  C  K  G  C  F  H  S  T  S  Q   : A  R  S  K  *  A  T  L  V  C  I  Q  T  K  P  F  I  L  G  W  K  :  S  S  R  *  L  W  F  *  S  L  G  T  L  G  P  *  R  H  R  R  F  H  R  A  E  M  A  S  I  W  R  G  H  Q  W  S  V  R  H  V  R  S  C  R  G  N  S  T  R  D  S  W  K  S  W  S  H  P  T  R  N  S  T  C  M  V  P  N  W  C  Y  P  T  S  R  N  I  Q  L  L  G  *  Q  L  H  I  V  C  S  *  N  G  T  H  G  L  C  *  A  Q  E  I  P  R  L  G  Q  T  W  F  N  G  E  T  I  L  L  G  S  *  K  G  F  G  W  V  R  *  S  S  I  P  R  W  P  I  V  *  S  T  W  I  W  K  R  *  K  V  Y  E  G  I  E  A  *  G  D  *  E  R  K  T  C  Y  V  G  C  F  G  I  L  Y  S  S  I  G  Y  W  C  W  T  L  P  K  P  S  *  S  F  G  *  S  S  K  Q  Q  C  L  D  *  S  Q  V  S  L  N  *  V  E  Q  K  Q  S  T  L  S  S  K  S  P  P  L  P  F  S  Y  V  *  C  N  I  M  C  R  *  Y  F  S  S  H  L  *  C  *  N  K  D  M  S  F  L  K   : E  K  V  N  S  K  K  :  V  T  S  L  K  Q  I  R  *  E  *  K  T  R  D  D  G  W  H  R  D  D  E  N  M  I  K :   G  S  K  V  G  *  M  K   </first_frame>
            <second_frame>  N  T  L  S  P  Y  L  P  P  F  V  F  N  L  F  L  W  S  *  V  F  I  L  F  F  F  S  K  K  Q  K  Q  T  K  K  R  R  E  I  M  A  T  Q  A  L  I  S  S  S  S  I  S  T  S  A  E  A  A  R  Q  I  I  G  S  R  I  S  Q  S  V  T  R  K  A  S  F  V  V  R  A  A  S  T  P  P  V  K  :  Q  G  A  N  R  Q  L  W  F  A  S  K  Q  S  L  S  Y  L  D  G  S :   L  P  G  D  F  G  F  D  P  L  G  L  S  D  P  E  G  T  G  G  F  I  E  P  K  W  L  A  Y  G  E  V  I  N  G  R  F  A  M  L  G  A  A  G  A  I  A  P  E  I  L  G  K  A  G  L  I  P  Q  E  T  A  L  A  W  F  Q  T  G  V  I  P  P  A  G  T  Y  N  Y  W  A  D  N  Y  T  L  F  V  L  E  M  A  L  M  G  F  A  E  H  R  R  F  Q  D  W  A  K  P  G  S  M  G  K  Q  Y  F  L  G  L  E  K  G  L  G  G  S  G  D  P  A  Y  P  G  G  P  L  F  N  P  L  G  F  G  K  D  E  K  S  M  K  E  L  K  L  K  E  I  K  N  G  R  L  A  M  L  A  V  L  G  Y  F  I  Q  A  L  V  T  G  V  G  P  Y  Q  N  L  L  D  H  L  A  D  P  V  N  N  N  V  L  T  S  L  K  F  H  *  T  K  *  S  K  S  N  P  L  F  L  L  N  L  P  P  S  P  S  L  M  C  N  V  T  L  C  A  D  N  I  F  H  L  I  C  N  A  K  T  R  T  C  H  F  *  K  :  K  K  *  I  A  K  K :   *  H  H  *  N  K  *  D  K  N  E  R  P  V  M  M  A  G  I  E  M  M  R  T  *  S   : R  D  Q  K  L  D  E  *  N  </second_frame>
            <third_frame>   I  L  C  P  L  I  C  H  L  L  Y  L  I  Y  S  C  G  A  K  C  L  Y  Y  S  S  S  Q  K  N  K  N  K  Q  K  R  E  E  K  L  W  Q  L  K  H  *  S  L  H  H  Q  L  A  L  Q  L  K  L  Q  D  K  L  L  D  Q  E  F  H  N  L  L  L  E  K  L  L  L  L  *  G  L  L  P  L  H  Q  S  S :   K  E  Q  I  G  N  S  G  L  H  P  N  K  A  F  H  T  W  M  E   : V  F  P  V  T  L  V  L  I  P  W  D  S  R  T  L  K  A  Q  E  V  S  S  S  R  N  G  *  H  M  A  R  S  S  M  V  G  S  P  C  *  E  L  Q  G  Q  *  H  Q  R  F  L  E  K  L  V  S  S  H  K  K  Q  H  L  H  G  S  K  L  V  L  S  H  Q  Q  E  H  T  T  T  G  L  T  I  T  H  C  L  F  L  K  W  H  S  W  A  L  L  S  T  G  D  S  K  I  G  P  N  L  V  Q  W  G  N  N  T  S  W  V  L  K  R  V  W  V  G  Q  V  I  Q  H  T  Q  V  A  H  C  L  I  H  L  D  L  E  K  M  K  S  L  *  R  N  *  S  L  R  R  L  R  T  E  D  L  L  C  W  L  F  W  D  T  L  F  K  H  W  L  L  V  L  D  L  T  K  T  F  L  I  I  W  L  I  Q  *  T  T  M  S  *  L  V  S  S  F  T  K  L  S  R  A  K  A  I  H  S  F  F  *  I  S  P  P  P  L  L  L  C  V  M  *  H  Y  V  Q  I  I  F  F  I  S  S  V  M  L  K  Q  G  H  V  I  F  K  R :   K  S  K  *  Q  K   : S  N  I  I  K  T  N  K  I  R  M  K  D  P  *  *  W  L  A  *  R  *  *  E  H  D  Q  :  G  I  K  S  W  M  N  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95883" stop="95680"/>
                    <exon start="95346" stop="95285"/>
                    <exon start="94722" stop="94107"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>879</number_coding_nucleotides>
                  <number_encoded_amino_acids>293</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFILFFFSKKQKQTKKRREIMATQALISSSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAVLGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95513" e_stop="95511"/>
            <exon e_start="95346" e_stop="95285"/>
            <exon e_start="94722" e_stop="93919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95513" e_stop="95511" e_length="3"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.992">
            <gDNA_intron_boundary i_start="95510" i_stop="95347" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95346" e_stop="95285" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="95284" i_stop="94723" i_length="562"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="94722" e_stop="93919" e_length="804"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95513" stop="95511"/>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="93941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95346" stop="95285"/>
              <exon start="94722" stop="94170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95341" stop="95285"/>
              <exon start="94722" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552376" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95341" stop="95285"/>
              <exon start="94722" stop="94085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95340" stop="95285"/>
              <exon start="94722" stop="93983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95338" stop="95285"/>
              <exon start="94722" stop="93980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95338" stop="95285"/>
              <exon start="94722" stop="94114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95285"/>
              <exon start="94722" stop="94328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94633" stop="93983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342441" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94633" stop="94199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288094" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94632" stop="93977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94629" stop="93931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94616" stop="94212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94606" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94587" stop="94346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94554" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94539" stop="94031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288678" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94475" stop="94104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94461" stop="93955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94456" stop="93981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94436" stop="93943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296891" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94436" stop="93959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94430" stop="93933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94423" stop="94005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94420" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224421" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94415" stop="93930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94414" stop="93982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94403" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94393" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94387" stop="93950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94365" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94364" stop="93919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736768" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94363" stop="93957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94344" stop="93941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94319" stop="93966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94313" stop="94019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94271" stop="93960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298821" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAG : CAAGGAGCAAATAGGCAACTCTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGAAG : TCTTCCCGGTGACTTTGGTTTTGATCCCTTGGGACTCTCGGACCCTGAAGGCACAGGAGGTTTCATCGAGCCGAAATGGCTAGCATATGGCGAGGTCATCAATGGTCGGTTCGCCATGTTAGGAGCTGCAGGGGCAATAGCACCAGAGATTCTTGGAAAAGCTGGTCTCATCCCACAAGAAACAGCACTTGCATGGTTCCAAACTGGTGTTATCCCACCAGCAGGAACATACAACTACTGGGCTGACAATTACACATTGTTTGTTCTTGAAATGGCACTCATGGGCTTTGCTGAGCACAGGAGATTCCAAGATTGGGCCAAACCTGGTTCAATGGGGAAACAATACTTCTTGGGTCTTGAAAAGGGTTTGGGTGGGTCAGGTGATCCAGCATACCCAGGTGGCCCATTGTTTAATCCACTTGGATTTGGAAAAGATGAAAAGTCTATGAAGGAATTGAAGCTTAAGGAGATTAAGAACGGAAGACTTGCTATGTTGGCTGTTTTGGGATACTTTATTCAAGCATTGGTTACTGGTGTTGGACCTTACCAAAACCTTCTTGATCATTTGGCTGATCCAGTAAACAACAATGTCTTGACTAGTCTCAAGTTTCACTAAACTAAGTAGAGCAAAAGCAATCCACTCTTTCTTCTAAATCTCCCCCCCTCCCCTTCTCTTATGTGTAATGTAACATTATGTGCAGATAATATTTTTCATCTCATCTGTAATGCTAAAACAAGGACATGTCATTTTTAAAAGGCCTGATATATATTTTTTAGAGGAAATCATCTAGTATTCTGATCTTA</gDNA_template>
            <first_frame> K  :  Q  G  A  N  R  Q  L  W  F  A  S  K  Q  S  L  S  Y  L  D  G  S :   L  P  G  D  F  G  F  D  P  L  G  L  S  D  P  E  G  T  G  G  F  I  E  P  K  W  L  A  Y  G  E  V  I  N  G  R  F  A  M  L  G  A  A  G  A  I  A  P  E  I  L  G  K  A  G  L  I  P  Q  E  T  A  L  A  W  F  Q  T  G  V  I  P  P  A  G  T  Y  N  Y  W  A  D  N  Y  T  L  F  V  L  E  M  A  L  M  G  F  A  E  H  R  R  F  Q  D  W  A  K  P  G  S  M  G  K  Q  Y  F  L  G  L  E  K  G  L  G  G  S  G  D  P  A  Y  P  G  G  P  L  F  N  P  L  G  F  G  K  D  E  K  S  M  K  E  L  K  L  K  E  I  K  N  G  R  L  A  M  L  A  V  L  G  Y  F  I  Q  A  L  V  T  G  V  G  P  Y  Q  N  L  L  D  H  L  A  D  P  V  N  N  N  V  L  T  S  L  K  F  H  *  T  K  *  S  K  S  N  P  L  F  L  L  N  L  P  P  S  P  S  L  M  C  N  V  T  L  C  A  D  N  I  F  H  L  I  C  N  A  K  T  R  T  C  H  F  *  K  A  *  Y  I  F  F  R  G  N  H  L  V  F  *  S   </first_frame>
            <second_frame>  S :   K  E  Q  I  G  N  S  G  L  H  P  N  K  A  F  H  T  W  M  E   : V  F  P  V  T  L  V  L  I  P  W  D  S  R  T  L  K  A  Q  E  V  S  S  S  R  N  G  *  H  M  A  R  S  S  M  V  G  S  P  C  *  E  L  Q  G  Q  *  H  Q  R  F  L  E  K  L  V  S  S  H  K  K  Q  H  L  H  G  S  K  L  V  L  S  H  Q  Q  E  H  T  T  T  G  L  T  I  T  H  C  L  F  L  K  W  H  S  W  A  L  L  S  T  G  D  S  K  I  G  P  N  L  V  Q  W  G  N  N  T  S  W  V  L  K  R  V  W  V  G  Q  V  I  Q  H  T  Q  V  A  H  C  L  I  H  L  D  L  E  K  M  K  S  L  *  R  N  *  S  L  R  R  L  R  T  E  D  L  L  C  W  L  F  W  D  T  L  F  K  H  W  L  L  V  L  D  L  T  K  T  F  L  I  I  W  L  I  Q  *  T  T  M  S  *  L  V  S  S  F  T  K  L  S  R  A  K  A  I  H  S  F  F  *  I  S  P  P  P  L  L  L  C  V  M  *  H  Y  V  Q  I  I  F  F  I  S  S  V  M  L  K  Q  G  H  V  I  F  K  R  P  D  I  Y  F  L  E  E  I  I  *  Y  S  D  L  </second_frame>
            <third_frame>    : A  R  S  K  *  A  T  L  V  C  I  Q  T  K  P  F  I  L  G  W  K  :  S  S  R  *  L  W  F  *  S  L  G  T  L  G  P  *  R  H  R  R  F  H  R  A  E  M  A  S  I  W  R  G  H  Q  W  S  V  R  H  V  R  S  C  R  G  N  S  T  R  D  S  W  K  S  W  S  H  P  T  R  N  S  T  C  M  V  P  N  W  C  Y  P  T  S  R  N  I  Q  L  L  G  *  Q  L  H  I  V  C  S  *  N  G  T  H  G  L  C  *  A  Q  E  I  P  R  L  G  Q  T  W  F  N  G  E  T  I  L  L  G  S  *  K  G  F  G  W  V  R  *  S  S  I  P  R  W  P  I  V  *  S  T  W  I  W  K  R  *  K  V  Y  E  G  I  E  A  *  G  D  *  E  R  K  T  C  Y  V  G  C  F  G  I  L  Y  S  S  I  G  Y  W  C  W  T  L  P  K  P  S  *  S  F  G  *  S  S  K  Q  Q  C  L  D  *  S  Q  V  S  L  N  *  V  E  Q  K  Q  S  T  L  S  S  K  S  P  P  L  P  F  S  Y  V  *  C  N  I  M  C  R  *  Y  F  S  S  H  L  *  C  *  N  K  D  M  S  F  L  K  G  L  I  Y  I  F  *  R  K  S  S  S  I  L  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="17" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95513" stop="95511"/>
                    <exon start="95346" stop="95285"/>
                    <exon start="94722" stop="94107"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KQGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAVLGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="93939" PGL_stop="94607"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93939" e_stop="94607"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="93939" e_stop="94607" e_length="669"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93939" stop="94607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCCTCTAAAAAATATATATCAGGCCTTTTAAAAATGACATGTCCTTGTTTTAGCATTACAGATGAGATGAAAAATATTATCTGCACATAATGTTACATTACACATAAGAGAAGGGGAGGGGGGGAGATTTAGAAGAAAGAGTGGATTGCTTTTGCTCTACTTAGTTTAGTGAAACTTGAGACTAGTCAAGACATTGTTGTTTACTGGATCAGCCAAATGATCAAGAAGGTTTTGGTAAGGTCCAACACCAGTAACCAATGCTTGAATAAAGTATCCCAAAACAGCCAACATAGCAAGTCTTCCGTTCTTAATCTCCTTAAGCTTCAATTCCTTCATAGACTTTTCATCTTTTCCAAATCCAAGTGGATTAAACAATGGGCCACCTGGGTATGCTGGATCACCTGACCCACCCAAACCCTTTTCAAGACCCAAGAAGTATTGTTTCCCCATTGAACCAGGTTTGGCCCAATCTTGGAATCTCCTGTGCTCAGCAAAGCCCATGAGTGCCATTTCAAGAACAAACAATGTGTAATTGTCAGCCCAGTAGTTGTATGTTCCTGCTGGTGGGATAACACCAGTTTGGAACCATGCAAGTGCTGTTTCTTGTGGGATGAGACCAGCTTTTCCAAGAATCTCTGGTGCTATTGCCCCTGCAGCTCCTAACAT</gDNA_template>
            <first_frame> I  S  S  K  K  Y  I  S  G  L  L  K  M  T  C  P  C  F  S  I  T  D  E  M  K  N  I  I  C  T  *  C  Y  I  T  H  K  R  R  G  G  G  E  I  *  K  K  E  W  I  A  F  A  L  L  S  L  V  K  L  E  T  S  Q  D  I  V  V  Y  W  I  S  Q  M  I  K  K  V  L  V  R  S  N  T  S  N  Q  C  L  N  K  V  S  Q  N  S  Q  H  S  K  S  S  V  L  N  L  L  K  L  Q  F  L  H  R  L  F  I  F  S  K  S  K  W  I  K  Q  W  A  T  W  V  C  W  I  T  *  P  T  Q  T  L  F  K  T  Q  E  V  L  F  P  H  *  T  R  F  G  P  I  L  E  S  P  V  L  S  K  A  H  E  C  H  F  K  N  K  Q  C  V  I  V  S  P  V  V  V  C  S  C  W  W  D  N  T  S  L  E  P  C  K  C  C  F  L  W  D  E  T  S  F  S  K  N  L  W  C  Y  C  P  C  S  S  *  H </first_frame>
            <second_frame>  F  P  L  K  N  I  Y  Q  A  F  *  K  *  H  V  L  V  L  A  L  Q  M  R  *  K  I  L  S  A  H  N  V  T  L  H  I  R  E  G  E  G  G  R  F  R  R  K  S  G  L  L  L  L  Y  L  V  *  *  N  L  R  L  V  K  T  L  L  F  T  G  S  A  K  *  S  R  R  F  W  *  G  P  T  P  V  T  N  A  *  I  K  Y  P  K  T  A  N  I  A  S  L  P  F  L  I  S  L  S  F  N  S  F  I  D  F  S  S  F  P  N  P  S  G  L  N  N  G  P  P  G  Y  A  G  S  P  D  P  P  K  P  F  S  R  P  K  K  Y  C  F  P  I  E  P  G  L  A  Q  S  W  N  L  L  C  S  A  K  P  M  S  A  I  S  R  T  N  N  V  *  L  S  A  Q  *  L  Y  V  P  A  G  G  I  T  P  V  W  N  H  A  S  A  V  S  C  G  M  R  P  A  F  P  R  I  S  G  A  I  A  P  A  A  P  N   </second_frame>
            <third_frame>   F  L  *  K  I  Y  I  R  P  F  K  N  D  M  S  L  F  *  H  Y  R  *  D  E  K  Y  Y  L  H  I  M  L  H  Y  T  *  E  K  G  R  G  G  D  L  E  E  R  V  D  C  F  C  S  T  *  F  S  E  T  *  D  *  S  R  H  C  C  L  L  D  Q  P  N  D  Q  E  G  F  G  K  V  Q  H  Q  *  P  M  L  E  *  S  I  P  K  Q  P  T  *  Q  V  F  R  S  *  S  P  *  A  S  I  P  S  *  T  F  H  L  F  Q  I  Q  V  D  *  T  M  G  H  L  G  M  L  D  H  L  T  H  P  N  P  F  Q  D  P  R  S  I  V  S  P  L  N  Q  V  W  P  N  L  G  I  S  C  A  Q  Q  S  P  *  V  P  F  Q  E  Q  T  M  C  N  C  Q  P  S  S  C  M  F  L  L  V  G  *  H  Q  F  G  T  M  Q  V  L  F  L  V  G  *  D  Q  L  F  Q  E  S  L  V  L  L  P  L  Q  L  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94074" stop="94346"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKEWIAFALLSLVKLETSQDIVVYWISQMIKKVLVRSNTSNQCLNKVSQNSQHSKSSVLNLLKLQFLHRLFIFSKSKWIKQWATWVCWIT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94207" stop="94473"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKYPKTANIASLPFLISLSFNSFIDFSSFPNPSGLNNGPPGYAGSPDPPKPFSRPKKYCFPIEPGLAQSWNLLCSAKPMSAISRTNNV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94395" stop="94604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TRFGPILESPVLSKAHECHFKNKQCVIVSPVVVCSCWWDNTSLEPCKCCFLWDETSFSKNLWCYCPCSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="97550" PGL_stop="100568"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97550" e_stop="97851"/>
            <exon e_start="99460" e_stop="99676"/>
            <exon e_start="99884" e_stop="100196"/>
            <exon e_start="100278" e_stop="100568"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.962" e_score="0.974"/>
          <exon-intron don_prob="0.914" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="97550" e_stop="97851" e_length="302"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.962">
            <gDNA_intron_boundary i_start="97852" i_stop="99459" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="99460" e_stop="99676" e_length="217"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="1.000">
            <gDNA_intron_boundary i_start="99677" i_stop="99883" i_length="207"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="99884" e_stop="100196" e_length="313"/>
          </exon>
          <intron i_serial="3" don_prob="0.939" acc_prob="0.998">
            <gDNA_intron_boundary i_start="100197" i_stop="100277" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="100278" e_stop="100568" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97550" stop="97851"/>
              <exon start="99460" stop="99651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99475" stop="99676"/>
              <exon start="99884" stop="100196"/>
              <exon start="100278" stop="100568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706409" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGCACGGGAGAACTCCGGCGGGTCGCCTTCCCCGCCGATGGATGAGCAGCGGCAGTCATAGCAAAACAACGGTGATGAGCTTCGGTGACGGAAGCCACGGAGCTTTGGGCCTTCCGTCATCCATCATTGGTATGGGATCCGACGCTTACGAGCCTACTCCTATACCCGGTCTCCCGCCTGACGTCGTTTCCGTCGCCGCCGGTCACTTCCATTCTCTCGCCGTTACTTCTGAGGGACATGTTTGGGCTTGGGGACGTAACAATGAAGGCCAGCTTGGCCGTGATCCCCTTTCTCCCAG : AGAAACGTGGAATGAACCAAAAAGAGTAGAAGGACTACATAAAGTACGAGTTCAAACCGCATTTGCATCAGGTGTCATTTCTGCCGCCATAGGAGATGATGGATCTCTATGGGTTTGGGGAAGTTCTAAGCGTGGGCAGCTTGGTCTTGGCAAGGGAATCACCAACACTGCATTACCTTTGAAAATTGAAACACTTTCTGGAGAAGATATTGTTAAG : GTCTCATTAGGTTGGGGACATGCTCTTGCACTAGCTAAGAATGGGAATTTGTTTGGCTGGGGATACTATGCAGATGGTAGAATCGGTAAGATAGGAAGAGAGTTGGAGATATCTCCACTGGAATCAAATAGTATTAAACCTAGATCAAGAGGAGAATCTTCTGCAATTGAAGCTGCTGAGAAGTCAGTCATGGAAGCTATCGAGAAGGAAAAAGATATGCCTATCATATGGGAGCCTGGTTCAATTGAGGAGCTACACGAGTTAAAAGTTGCAGATGTAGCTTGTGGACTTGATCACTCTCTTGTCCTTTGCC : GTGATGGGATGCTGTTTAGTGGTGGAAGCAATGTGTATGGCCAGTTAGGAAGAGCGATAAAAGACTTGGGAATGCAACCCGTTGATATAAACTTCCTTCCTCTCTCTATAGCTTCGGGTCTTGGGCATTCTTTGGCAGTTTGTAACGATCGTTCATCAGAACCAACAGGAAATGCAACAAGTGTTGTATCATGGGGATGGAACAAAAGTTCTCAACTTGGGAGGGAAGGTCCAGACAACACTCCTCAGGTTGTTGAAGGGCTGATTGGCGAATCACCTGTTTCTGTATCAG</gDNA_template>
            <first_frame> L  K  H  G  R  T  P  A  G  R  L  P  R  R  W  M  S  S  G  S  H  S  K  T  T  V  M  S  F  G  D  G  S  H  G  A  L  G  L  P  S  S  I  I  G  M  G  S  D  A  Y  E  P  T  P  I  P  G  L  P  P  D  V  V  S  V  A  A  G  H  F  H  S  L  A  V  T  S  E  G  H  V  W  A  W  G  R  N  N  E  G  Q  L  G  R  D  P  L  S  P  R :   E  T  W  N  E  P  K  R  V  E  G  L  H  K  V  R  V  Q  T  A  F  A  S  G  V  I  S  A  A  I  G  D  D  G  S  L  W  V  W  G  S  S  K  R  G  Q  L  G  L  G  K  G  I  T  N  T  A  L  P  L  K  I  E  T  L  S  G  E  D  I  V  K  :  V  S  L  G  W  G  H  A  L  A  L  A  K  N  G  N  L  F  G  W  G  Y  Y  A  D  G  R  I  G  K  I  G  R  E  L  E  I  S  P  L  E  S  N  S  I  K  P  R  S  R  G  E  S  S  A  I  E  A  A  E  K  S  V  M  E  A  I  E  K  E  K  D  M  P  I  I  W  E  P  G  S  I  E  E  L  H  E  L  K  V  A  D  V  A  C  G  L  D  H  S  L  V  L  C   : R  D  G  M  L  F  S  G  G  S  N  V  Y  G  Q  L  G  R  A  I  K  D  L  G  M  Q  P  V  D  I  N  F  L  P  L  S  I  A  S  G  L  G  H  S  L  A  V  C  N  D  R  S  S  E  P  T  G  N  A  T  S  V  V  S  W  G  W  N  K  S  S  Q  L  G  R  E  G  P  D  N  T  P  Q  V  V  E  G  L  I  G  E  S  P  V  S  V  S  </first_frame>
            <second_frame>  *  S  T  G  E  L  R  R  V  A  F  P  A  D  G  *  A  A  A  V  I  A  K  Q  R  *  *  A  S  V  T  E  A  T  E  L  W  A  F  R  H  P  S  L  V  W  D  P  T  L  T  S  L  L  L  Y  P  V  S  R  L  T  S  F  P  S  P  P  V  T  S  I  L  S  P  L  L  L  R  D  M  F  G  L  G  D  V  T  M  K  A  S  L  A  V  I  P  F  L  P   : E  K  R  G  M  N  Q  K  E  *  K  D  Y  I  K  Y  E  F  K  P  H  L  H  Q  V  S  F  L  P  P  *  E  M  M  D  L  Y  G  F  G  E  V  L  S  V  G  S  L  V  L  A  R  E  S  P  T  L  H  Y  L  *  K  L  K  H  F  L  E  K  I  L  L  R :   S  H  *  V  G  D  M  L  L  H  *  L  R  M  G  I  C  L  A  G  D  T  M  Q  M  V  E  S  V  R  *  E  E  S  W  R  Y  L  H  W  N  Q  I  V  L  N  L  D  Q  E  E  N  L  L  Q  L  K  L  L  R  S  Q  S  W  K  L  S  R  R  K  K  I  C  L  S  Y  G  S  L  V  Q  L  R  S  Y  T  S  *  K  L  Q  M  *  L  V  D  L  I  T  L  L  S  F  A  :  V  M  G  C  C  L  V  V  E  A  M  C  M  A  S  *  E  E  R  *  K  T  W  E  C  N  P  L  I  *  T  S  F  L  S  L  *  L  R  V  L  G  I  L  W  Q  F  V  T  I  V  H  Q  N  Q  Q  E  M  Q  Q  V  L  Y  H  G  D  G  T  K  V  L  N  L  G  G  K  V  Q  T  T  L  L  R  L  L  K  G  *  L  A  N  H  L  F  L  Y  Q </second_frame>
            <third_frame>   E  A  R  E  N  S  G  G  S  P  S  P  P  M  D  E  Q  R  Q  S  *  Q  N  N  G  D  E  L  R  *  R  K  P  R  S  F  G  P  S  V  I  H  H  W  Y  G  I  R  R  L  R  A  Y  S  Y  T  R  S  P  A  *  R  R  F  R  R  R  R  S  L  P  F  S  R  R  Y  F  *  G  T  C  L  G  L  G  T  *  Q  *  R  P  A  W  P  *  S  P  F  S  Q  :  R  N  V  E  *  T  K  K  S  R  R  T  T  *  S  T  S  S  N  R  I  C  I  R  C  H  F  C  R  H  R  R  *  W  I  S  M  G  L  G  K  F  *  A  W  A  A  W  S  W  Q  G  N  H  Q  H  C  I  T  F  E  N  *  N  T  F  W  R  R  Y  C  *   : G  L  I  R  L  G  T  C  S  C  T  S  *  E  W  E  F  V  W  L  G  I  L  C  R  W  *  N  R  *  D  R  K  R  V  G  D  I  S  T  G  I  K  *  Y  *  T  *  I  K  R  R  I  F  C  N  *  S  C  *  E  V  S  H  G  S  Y  R  E  G  K  R  Y  A  Y  H  M  G  A  W  F  N  *  G  A  T  R  V  K  S  C  R  C  S  L  W  T  *  S  L  S  C  P  L  P :   *  W  D  A  V  *  W  W  K  Q  C  V  W  P  V  R  K  S  D  K  R  L  G  N  A  T  R  *  Y  K  L  P  S  S  L  Y  S  F  G  S  W  A  F  F  G  S  L  *  R  S  F  I  R  T  N  R  K  C  N  K  C  C  I  M  G  M  E  Q  K  F  S  T  W  E  G  R  S  R  Q  H  S  S  G  C  *  R  A  D  W  R  I  T  C  F  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97550" stop="97851"/>
                    <exon start="99460" stop="99676"/>
                    <exon start="99884" stop="100196"/>
                    <exon start="100278" stop="100567"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1122</number_coding_nucleotides>
                  <number_encoded_amino_acids>374</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKHGRTPAGRLPRRWMSSGSHSKTTVMSFGDGSHGALGLPSSIIGMGSDAYEPTPIPGLPPDVVSVAAGHFHSLAVTSEGHVWAWGRNNEGQLGRDPLSPRETWNEPKRVEGLHKVRVQTAFASGVISAAIGDDGSLWVWGSSKRGQLGLGKGITNTALPLKIETLSGEDIVKVSLGWGHALALAKNGNLFGWGYYADGRIGKIGRELEISPLESNSIKPRSRGESSAIEAAEKSVMEAIEKEKDMPIIWEPGSIEELHELKVADVACGLDHSLVLCRDGMLFSGGSNVYGQLGRAIKDLGMQPVDINFLPLSIASGLGHSLAVCNDRSSEPTGNATSVVSWGWNKSSQLGREGPDNTPQVVEGLIGESPVSVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="102352" PGL_stop="100904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102352" e_stop="102025"/>
            <exon e_start="101577" e_stop="101541"/>
            <exon e_start="101362" e_stop="101241"/>
            <exon e_start="101157" e_stop="100904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.951"/>
          <exon-intron don_prob="0.992" acc_prob="0.543" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="102352" e_stop="102025" e_length="328"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="102024" i_stop="101578" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="101577" e_stop="101541" e_length="37"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.543">
            <gDNA_intron_boundary i_start="101540" i_stop="101363" i_length="178"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="101362" e_stop="101241" e_length="122"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="101240" i_stop="101158" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="101157" e_stop="100904" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102352" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577958" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102311" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102311" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102310" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102285" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102283" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102278" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326041" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102273" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="100975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102273" stop="102025"/>
              <exon start="101577" stop="101541"/>
              <exon start="101362" stop="101241"/>
              <exon start="101157" stop="101029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTCCCTCTTCAAGAAACAAGAAAAGGATAACAACAATTCCCCAAAAAAAACAAAGAGAAAAAATGGCACTACAACTTCAACATTTATCATCATCAACAACACCTAAATTCAACACTTTTGCTTCTCAATTGCTACCAATTTTCCAAAATGTTGTGTGTGTCTCAAAATTTAAAAATGGTGGCATAACAAGTCTAAGATTATCATCATCATCATCAAGAATTAGGAAAAAAAGGACTACATATTTGTGTAGAATATCAGCTTCACTTTCACCTCTTGATTTGACTGAAGACAACATTATCCAAGTCCTAGAAGATGCAAAGGCTGAG : TTGGCACAACTTTTTGATACTACAGTTGGGATAACAG : GAAAAGCAGAACTTGCAGAAGTGGATGGACCTTATGTGAAACTTAGACTAAGTGGCAAATTTTGGCATACACGTTCTACTGTTGTAGCAAGACTTGGTAATTACTTGAAGCAAAGAATCCCT : GAAATCTTGGAGGTGGATATAGAAGATGAGAAACAGTTAGATGATAGCCCTGCAAACTTCTGAGATTCGGAGTCGGAGGGAGTTGAAGAGAGCTCAAAGACACTAAAAACGAGCATTATGGCTCGATGCTTCTGAAGCCTATCGCGAGGGATCCTCAGACGAGGCACTCGTTTTTGTAGGATCCTATTTGTCATTCAAAGACAAAAGATACTAATAGTTGAGAATGATTTCCTAAGAATTAGTTCTTTATTTCT</gDNA_template>
            <first_frame> I  S  L  F  K  K  Q  E  K  D  N  N  N  S  P  K  K  T  K  R  K  N  G  T  T  T  S  T  F  I  I  I  N  N  T  *  I  Q  H  F  C  F  S  I  A  T  N  F  P  K  C  C  V  C  L  K  I  *  K  W  W  H  N  K  S  K  I  I  I  I  I  I  K  N  *  E  K  K  D  Y  I  F  V  *  N  I  S  F  T  F  T  S  *  F  D  *  R  Q  H  Y  P  S  P  R  R  C  K  G  *   : V  G  T  T  F  *  Y  Y  S  W  D  N  R :   K  S  R  T  C  R  S  G  W  T  L  C  E  T  *  T  K  W  Q  I  L  A  Y  T  F  Y  C  C  S  K  T  W  *  L  L  E  A  K  N  P   : *  N  L  G  G  G  Y  R  R  *  E  T  V  R  *  *  P  C  K  L  L  R  F  G  V  G  G  S  *  R  E  L  K  D  T  K  N  E  H  Y  G  S  M  L  L  K  P  I  A  R  D  P  Q  T  R  H  S  F  L  *  D  P  I  C  H  S  K  T  K  D  T  N  S  *  E  *  F  P  K  N  *  F  F  I  S </first_frame>
            <second_frame>  F  P  S  S  R  N  K  K  R  I  T  T  I  P  Q  K  K  Q  R  E  K  M  A  L  Q  L  Q  H  L  S  S  S  T  T  P  K  F  N  T  F  A  S  Q  L  L  P  I  F  Q  N  V  V  C  V  S  K  F  K  N  G  G  I  T  S  L  R  L  S  S  S  S  S  R  I  R  K  K  R  T  T  Y  L  C  R  I  S  A  S  L  S  P  L  D  L  T  E  D  N  I  I  Q  V  L  E  D  A  K  A  E  :  L  A  Q  L  F  D  T  T  V  G  I  T   : G  K  A  E  L  A  E  V  D  G  P  Y  V  K  L  R  L  S  G  K  F  W  H  T  R  S  T  V  V  A  R  L  G  N  Y  L  K  Q  R  I  P  :  E  I  L  E  V  D  I  E  D  E  K  Q  L  D  D  S  P  A  N  F  *  D  S  E  S  E  G  V  E  E  S  S  K  T  L  K  T  S  I  M  A  R  C  F  *  S  L  S  R  G  I  L  R  R  G  T  R  F  C  R  I  L  F  V  I  Q  R  Q  K  I  L  I  V  E  N  D  F  L  R  I  S  S  L  F   </second_frame>
            <third_frame>   F  P  L  Q  E  T  R  K  G  *  Q  Q  F  P  K  K  N  K  E  K  K  W  H  Y  N  F  N  I  Y  H  H  Q  Q  H  L  N  S  T  L  L  L  L  N  C  Y  Q  F  S  K  M  L  C  V  S  Q  N  L  K  M  V  A  *  Q  V  *  D  Y  H  H  H  H  Q  E  L  G  K  K  G  L  H  I  C  V  E  Y  Q  L  H  F  H  L  L  I  *  L  K  T  T  L  S  K  S  *  K  M  Q  R  L  S :   W  H  N  F  L  I  L  Q  L  G  *  Q  :  E  K  Q  N  L  Q  K  W  M  D  L  M  *  N  L  D  *  V  A  N  F  G  I  H  V  L  L  L  *  Q  D  L  V  I  T  *  S  K  E  S  L :   K  S  W  R  W  I  *  K  M  R  N  S  *  M  I  A  L  Q  T  S  E  I  R  S  R  R  E  L  K  R  A  Q  R  H  *  K  R  A  L  W  L  D  A  S  E  A  Y  R  E  G  S  S  D  E  A  L  V  F  V  G  S  Y  L  S  F  K  D  K  R  Y  *  *  L  R  M  I  S  *  E  L  V  L  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102351" stop="102025"/>
                    <exon start="101577" stop="101541"/>
                    <exon start="101362" stop="101241"/>
                    <exon start="101157" stop="101095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FPSSRNKKRITTIPQKKQREKMALQLQHLSSSTTPKFNTFASQLLPIFQNVVCVSKFKNGGITSLRLSSSSSRIRKKRTTYLCRISASLSPLDLTEDNIIQVLEDAKAELAQLFDTTVGITGKAELAEVDGPYVKLRLSGKFWHTRSTVVARLGNYLKQRIPEILEVDIEDEKQLDDSPANF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="109162" PGL_stop="106849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109162" e_stop="109090"/>
            <exon e_start="109008" e_stop="108916"/>
            <exon e_start="107110" e_stop="106849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.196" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109162" e_stop="109090" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.196">
            <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109008" e_stop="108916" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.951">
            <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107110" e_stop="106849" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109162" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109159" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372296" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372297" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109158" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109157" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109150" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109150" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109147" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109142" stop="109090"/>
              <exon start="109008" stop="108916"/>
              <exon start="107110" stop="106876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108988" stop="108916"/>
              <exon start="107110" stop="106876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTCGTCTCCGCTAATTGTTGATCACCAATGGATTCTCAACCTGTTGAACCAGTCAGCTACATCTGTGGAG : ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA : TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTGAG</gDNA_template>
            <first_frame> C  F  V  S  A  N  C  *  S  P  M  D  S  Q  P  V  E  P  V  S  Y  I  C  G   : D  C  G  Q  E  N  T  L  K  P  G  D  V  I  Q  C  R  E  C  G  Y  R  I  L  Y  K  K  R  T  R  R   : I  V  Q  Y  E  A  R  *  F  L  K  S  F  G  K  N  S  K  C  L  L  L  W  K  *  I  L  K  T  L  A  N  Y  C  *  K  S  R  V  S  A  W  P  L  C  V  F  T  F  L  R  V  I  S  S  C  C  *  S  I  W  Q  L  R  L  E  L  S  V  I  E  I  L  *  K  F  L  T  *  S  C  F  K  F  E  S  L   </first_frame>
            <second_frame>  A  S  S  P  L  I  V  D  H  Q  W  I  L  N  L  L  N  Q  S  A  T  S  V  E  :  I  V  D  R  R  I  L  *  S  L  V  M  *  Y  S  V  V  N  V  V  I  V  F  F  T  R  R  G  L  A  E  :  S  C  S  M  K  L  V  D  S  *  S  H  L  V  K  T  A  S  A  C  S  Y  G  S  R  Y  *  K  R  *  L  T  T  V  K  N  H  A  F  Q  R  G  H  C  V  F  L  P  F  C  V  *  F  L  H  V  V  S  L  Y  G  N  F  D  L  N  S  A  *  L  K  Y  C  R  N  S  L  H  S  L  V  S  S  S  S  L  *  </second_frame>
            <third_frame>   L  R  L  R  *  L  L  I  T  N  G  F  S  T  C  *  T  S  Q  L  H  L  W  R :   L  W  T  G  E  Y  S  K  A  W  *  C  D  T  V  S  *  M  W  L  S  Y  S  L  Q  E  E  D  S  Q  N :   R  A  V  *  S  S  L  I  L  E  V  I  W  *  K  Q  Q  V  P  A  L  M  E  V  D  I  K  N  V  S  *  L  L  L  K  I  T  R  F  S  V  A  I  V  C  F  Y  L  S  A  C  D  F  F  M  L  L  V  Y  M  A  T  S  T  *  T  Q  R  D  *  N  I  V  E  I  P  Y  I  V  L  F  Q  V  R  V  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108014" e_stop="107455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108014" e_stop="107455" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108014" stop="107455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108014" stop="107779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108013" stop="107465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242743" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108013" stop="107471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108013" stop="107681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231186" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107946" stop="107495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237880" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTACATTTAATGTCGTATCTTTGTTAAAGAGAAGTCTTAGAAAAAGGCTCAAGCATAACCTAGAATTGTCATTAGAATTGCAATGATGAGATGTGAACCTGTAAGAAATCGGGAAGTCTTAGGATTGTATTGTTGAACAGTTTGATGGTCTTTAATCTTTTACTATTGTGTTTAGGTAATGTTTGCTAAATTGTGAAGACAACCCATGGAACTTTTCGACAATTAAATATCTTGATTACTAGTTGTGGTTGTCTGTTGATTGCAATGGAAGTTAAGAAACAAGAAATTATTATTTCATAAAACTGTATTCACGTTTATTTGTATATAGCATTCAACCATGCTGTCGCATATCATGCTTGAATTAGCTTTTCTTTTGGGCATCTTTAGGTGAATCTGGTTTAGAACATATGCTTTGGTTTAATCTGTGTATGTGCGATTAGCCTACCATTTTAATGGTCCATTTCTCCAACAACAGTCTCATTACATTCTGTTTAAAGTTGGAGGATATGGCATATTATTGGCTCTGTTAGCAATAGAAATCAATTAAGTGTAATTGTTT</gDNA_template>
            <first_frame> I  T  F  N  V  V  S  L  L  K  R  S  L  R  K  R  L  K  H  N  L  E  L  S  L  E  L  Q  *  *  D  V  N  L  *  E  I  G  K  S  *  D  C  I  V  E  Q  F  D  G  L  *  S  F  T  I  V  F  R  *  C  L  L  N  C  E  D  N  P  W  N  F  S  T  I  K  Y  L  D  Y  *  L  W  L  S  V  D  C  N  G  S  *  E  T  R  N  Y  Y  F  I  K  L  Y  S  R  L  F  V  Y  S  I  Q  P  C  C  R  I  S  C  L  N  *  L  F  F  W  A  S  L  G  E  S  G  L  E  H  M  L  W  F  N  L  C  M  C  D  *  P  T  I  L  M  V  H  F  S  N  N  S  L  I  T  F  C  L  K  L  E  D  M  A  Y  Y  W  L  C  *  Q  *  K  S  I  K  C  N  C   </first_frame>
            <second_frame>  L  H  L  M  S  Y  L  C  *  R  E  V  L  E  K  G  S  S  I  T  *  N  C  H  *  N  C  N  D  E  M  *  T  C  K  K  S  G  S  L  R  I  V  L  L  N  S  L  M  V  F  N  L  L  L  L  C  L  G  N  V  C  *  I  V  K  T  T  H  G  T  F  R  Q  L  N  I  L  I  T  S  C  G  C  L  L  I  A  M  E  V  K  K  Q  E  I  I  I  S  *  N  C  I  H  V  Y  L  Y  I  A  F  N  H  A  V  A  Y  H  A  *  I  S  F  S  F  G  H  L  *  V  N  L  V  *  N  I  C  F  G  L  I  C  V  C  A  I  S  L  P  F  *  W  S  I  S  P  T  T  V  S  L  H  S  V  *  S  W  R  I  W  H  I  I  G  S  V  S  N  R  N  Q  L  S  V  I  V  </second_frame>
            <third_frame>   Y  I  *  C  R  I  F  V  K  E  K  S  *  K  K  A  Q  A  *  P  R  I  V  I  R  I  A  M  M  R  C  E  P  V  R  N  R  E  V  L  G  L  Y  C  *  T  V  *  W  S  L  I  F  Y  Y  C  V  *  V  M  F  A  K  L  *  R  Q  P  M  E  L  F  D  N  *  I  S  *  L  L  V  V  V  V  C  *  L  Q  W  K  L  R  N  K  K  L  L  F  H  K  T  V  F  T  F  I  C  I  *  H  S  T  M  L  S  H  I  M  L  E  L  A  F  L  L  G  I  F  R  *  I  W  F  R  T  Y  A  L  V  *  S  V  Y  V  R  L  A  Y  H  F  N  G  P  F  L  Q  Q  Q  S  H  Y  I  L  F  K  V  G  G  Y  G  I  L  L  A  L  L  A  I  E  I  N  *  V  *  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="109009" e_stop="108916"/>
            <exon e_start="107110" e_stop="106851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.951" e_score="0.959"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="109009" e_stop="108916" e_length="94"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.951">
            <gDNA_intron_boundary i_start="108915" i_stop="107111" i_length="1805"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107110" e_stop="106851" e_length="260"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109009" stop="108916"/>
              <exon start="107110" stop="106851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108988" stop="108916"/>
              <exon start="107110" stop="106876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225317" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAA : TCGTGCAGTATGAAGCTCGTTGATTCTTGAAGTCATTTGGTAAAAACAGCAAGTGCCTGCTCTTATGGAAGTAGATATTAAAAACGTTAGCTAACTACTGTTAAAAATCACGCGTTTCAGCGTGGCCATTGTGTGTTTTTACCTTTCTGCGTGTGATTTCTTCATGTTGTTAGTCTATATGGCAACTTCGACTTGAACTCAGCGTGATTGAAATATTGTAGAAATTCCTTACATAGTCTTGTTTCAAGTTCGAGTCTCTG</gDNA_template>
            <first_frame> D  C  G  Q  E  N  T  L  K  P  G  D  V  I  Q  C  R  E  C  G  Y  R  I  L  Y  K  K  R  T  R  R   : I  V  Q  Y  E  A  R  *  F  L  K  S  F  G  K  N  S  K  C  L  L  L  W  K  *  I  L  K  T  L  A  N  Y  C  *  K  S  R  V  S  A  W  P  L  C  V  F  T  F  L  R  V  I  S  S  C  C  *  S  I  W  Q  L  R  L  E  L  S  V  I  E  I  L  *  K  F  L  T  *  S  C  F  K  F  E  S  L </first_frame>
            <second_frame>  I  V  D  R  R  I  L  *  S  L  V  M  *  Y  S  V  V  N  V  V  I  V  F  F  T  R  R  G  L  A  E  :  S  C  S  M  K  L  V  D  S  *  S  H  L  V  K  T  A  S  A  C  S  Y  G  S  R  Y  *  K  R  *  L  T  T  V  K  N  H  A  F  Q  R  G  H  C  V  F  L  P  F  C  V  *  F  L  H  V  V  S  L  Y  G  N  F  D  L  N  S  A  *  L  K  Y  C  R  N  S  L  H  S  L  V  S  S  S  S  L   </second_frame>
            <third_frame>   L  W  T  G  E  Y  S  K  A  W  *  C  D  T  V  S  *  M  W  L  S  Y  S  L  Q  E  E  D  S  Q  N :   R  A  V  *  S  S  L  I  L  E  V  I  W  *  K  Q  Q  V  P  A  L  M  E  V  D  I  K  N  V  S  *  L  L  L  K  I  T  R  F  S  V  A  I  V  C  F  Y  L  S  A  C  D  F  F  M  L  L  V  Y  M  A  T  S  T  *  T  Q  R  D  *  N  I  V  E  I  P  Y  I  V  L  F  Q  V  R  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="109103" e_stop="109090"/>
            <exon e_start="109008" e_stop="108348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.196" e_score="0.786"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.786">
            <gDNA_exon_boundary e_start="109103" e_stop="109090" e_length="14"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.196">
            <gDNA_intron_boundary i_start="109089" i_stop="109009" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="109008" e_stop="108348" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109103" stop="109090"/>
              <exon start="109008" stop="108348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553722" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTGTGGAG : ATTGTGGACAGGAGAATACTCTAAAGCCTGGTGATGTGATACAGTGTCGTGAATGTGGTTATCGTATTCTTTACAAGAAGAGGACTCGCAGAAGTAATTATTTTTCGTGTTATGCTTTTGTTATCCTTTTAATCTGAGTTTTGTGTGTTAATGTTTGCTTGATTGCTGTATTTGGGGTAAATTCAAACAAATTACTTGATTTAGGGATTTGGGTATGTTTGTTTTCGGCGTTATGTTATAAGATAAACTAGTTGATTTGAGGTTCGAGCAAGTTGACCTAGATAGCTGTATTTCGATTGTGGGAAATTAAGTGTGTTGAACTGAAGATCATGAGGTTTTAGGTTCGGATTCTACGTGTTTTGTTTCCACCTGTTATGACCTAGGTGGACAATGTTATCCTGTGCTTAAATTGGTGGGTGGTAGAGTGGAATTAGTCAAGGTGAGCGAGTGTGTATCGGATATTGTTATTAAGAAAACACTTTTGACATTGTAGGAAACTACCCCTTTTGGTATTATTGTGGTTCAGTTTCGACAGGGGTTGTTTCTTAAGGATGGAGTAGTAGGTTAAGGCTTATGGTTCTGTTTGTCTAACTTGGTTAGGTTATTCAATTGAGAGTAAAGGAAGTGTTGGAGTGAATTGGTTGATCTTAGAAACATATGG</gDNA_template>
            <first_frame> L  H  L  W  R :   L  W  T  G  E  Y  S  K  A  W  *  C  D  T  V  S  *  M  W  L  S  Y  S  L  Q  E  E  D  S  Q  K  *  L  F  F  V  L  C  F  C  Y  P  F  N  L  S  F  V  C  *  C  L  L  D  C  C  I  W  G  K  F  K  Q  I  T  *  F  R  D  L  G  M  F  V  F  G  V  M  L  *  D  K  L  V  D  L  R  F  E  Q  V  D  L  D  S  C  I  S  I  V  G  N  *  V  C  *  T  E  D  H  E  V  L  G  S  D  S  T  C  F  V  S  T  C  Y  D  L  G  G  Q  C  Y  P  V  L  K  L  V  G  G  R  V  E  L  V  K  V  S  E  C  V  S  D  I  V  I  K  K  T  L  L  T  L  *  E  T  T  P  F  G  I  I  V  V  Q  F  R  Q  G  L  F  L  K  D  G  V  V  G  *  G  L  W  F  C  L  S  N  L  V  R  L  F  N  *  E  *  R  K  C  W  S  E  L  V  D  L  R  N  I  W </first_frame>
            <second_frame>  Y  I  C  G   : D  C  G  Q  E  N  T  L  K  P  G  D  V  I  Q  C  R  E  C  G  Y  R  I  L  Y  K  K  R  T  R  R  S  N  Y  F  S  C  Y  A  F  V  I  L  L  I  *  V  L  C  V  N  V  C  L  I  A  V  F  G  V  N  S  N  K  L  L  D  L  G  I  W  V  C  L  F  S  A  L  C  Y  K  I  N  *  L  I  *  G  S  S  K  L  T  *  I  A  V  F  R  L  W  E  I  K  C  V  E  L  K  I  M  R  F  *  V  R  I  L  R  V  L  F  P  P  V  M  T  *  V  D  N  V  I  L  C  L  N  W  W  V  V  E  W  N  *  S  R  *  A  S  V  Y  R  I  L  L  L  R  K  H  F  *  H  C  R  K  L  P  L  L  V  L  L  W  F  S  F  D  R  G  C  F  L  R  M  E  *  *  V  K  A  Y  G  S  V  C  L  T  W  L  G  Y  S  I  E  S  K  G  S  V  G  V  N  W  L  I  L  E  T  Y   </second_frame>
            <third_frame>   T  S  V  E  :  I  V  D  R  R  I  L  *  S  L  V  M  *  Y  S  V  V  N  V  V  I  V  F  F  T  R  R  G  L  A  E  V  I  I  F  R  V  M  L  L  L  S  F  *  S  E  F  C  V  L  M  F  A  *  L  L  Y  L  G  *  I  Q  T  N  Y  L  I  *  G  F  G  Y  V  C  F  R  R  Y  V  I  R  *  T  S  *  F  E  V  R  A  S  *  P  R  *  L  Y  F  D  C  G  K  L  S  V  L  N  *  R  S  *  G  F  R  F  G  F  Y  V  F  C  F  H  L  L  *  P  R  W  T  M  L  S  C  A  *  I  G  G  W  *  S  G  I  S  Q  G  E  R  V  C  I  G  Y  C  Y  *  E  N  T  F  D  I  V  G  N  Y  P  F  W  Y  Y  C  G  S  V  S  T  G  V  V  S  *  G  W  S  S  R  L  R  L  M  V  L  F  V  *  L  G  *  V  I  Q  L  R  V  K  E  V  L  E  *  I  G  *  S  *  K  H  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="106963" PGL_stop="107369"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106963" e_stop="107369"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="106963" e_stop="107369" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106963" stop="107369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279343" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGGTAAAAACACACAATGGCCACGCTGAAACGCGTGATTTTTAACAGTAGTTAGCTAACGTTTTTAATATCTACTTCCATAAGAGCAGGCACTTGCTGTTTTTACCAAATGACTTCAAGAATCAACGAGCTTCATACTGCACGACTGCACCAAAACAAATATAGTAACTACTTGTAGAAAGTGAGACATTGTAGGTTGGCCCAGATTCCTCACAGCAACAAAGATGTTTCGAGATAAGTGTCTAAATTCTGGGTTGTGGTAAAACTCCTACTACTAAGATTCTTGTATTAGAAACCTTGCACTGGGGAATGGTATATTTAGCTTTCGAATCTCTGAATTTACAACAAAGGAATACAACTACATGCATAACAACCATCTTAGGATCGCTAACGTGGAAGATATC</gDNA_template>
            <first_frame> R  K  V  K  T  H  N  G  H  A  E  T  R  D  F  *  Q  *  L  A  N  V  F  N  I  Y  F  H  K  S  R  H  L  L  F  L  P  N  D  F  K  N  Q  R  A  S  Y  C  T  T  A  P  K  Q  I  *  *  L  L  V  E  S  E  T  L  *  V  G  P  D  S  S  Q  Q  Q  R  C  F  E  I  S  V  *  I  L  G  C  G  K  T  P  T  T  K  I  L  V  L  E  T  L  H  W  G  M  V  Y  L  A  F  E  S  L  N  L  Q  Q  R  N  T  T  T  C  I  T  T  I  L  G  S  L  T  W  K  I   </first_frame>
            <second_frame>  E  R  *  K  H  T  M  A  T  L  K  R  V  I  F  N  S  S  *  L  T  F  L  I  S  T  S  I  R  A  G  T  C  C  F  Y  Q  M  T  S  R  I  N  E  L  H  T  A  R  L  H  Q  N  K  Y  S  N  Y  L  *  K  V  R  H  C  R  L  A  Q  I  P  H  S  N  K  D  V  S  R  *  V  S  K  F  W  V  V  V  K  L  L  L  L  R  F  L  Y  *  K  P  C  T  G  E  W  Y  I  *  L  S  N  L  *  I  Y  N  K  G  I  Q  L  H  A  *  Q  P  S  *  D  R  *  R  G  R  Y  </second_frame>
            <third_frame>   K  G  K  N  T  Q  W  P  R  *  N  A  *  F  L  T  V  V  S  *  R  F  *  Y  L  L  P  *  E  Q  A  L  A  V  F  T  K  *  L  Q  E  S  T  S  F  I  L  H  D  C  T  K  T  N  I  V  T  T  C  R  K  *  D  I  V  G  W  P  R  F  L  T  A  T  K  M  F  R  D  K  C  L  N  S  G  L  W  *  N  S  Y  Y  *  D  S  C  I  R  N  L  A  L  G  N  G  I  F  S  F  R  I  S  E  F  T  T  K  E  Y  N  Y  M  H  N  N  H  L  R  I  A  N  V  E  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C10HBa0155I21.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="110861" PGL_stop="109884"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110861" e_stop="109884"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="110861" e_stop="109884" e_length="978"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110861" stop="110046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110860" stop="110132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110860" stop="110333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297860" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110854" stop="110304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110854" stop="110450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110853" stop="110360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110851" stop="110380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283278" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110726" stop="109884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAATAAAATTCTACCAATTTTCTTTTCCCCTCCAACATTACAATAATGGCCAATATTCTTAAATTGTTAAGGTTTTCAACAGAAATTGCTCCACAAAAATTTATCTCTTTACCTAAACCATGTCCAATTTCTAAAAAATTGGACACCATCAAAGAGGAAGAAGCTTATGTATCAGTTATTTCATCTTCTCTCGATAGAAAACTCGAAAGAGATCGATATCTCGGAACCGAAGTTAGCTCCATCTTAGCTTATTAGTAAGCATATGGCCTTACAAAAACTGCCTATACTATTCACTCCAAGAAAAATAAAAAGCACTACTATAGTCTTAAAATCCGTGTTGTTCATACTCTTTAAAAAAAATACTGTCAGTTGTTCATTCGACACTGATAGAACAATATTTTTTTTTAAGATTGGAACAACGTAGGTTAAAACTTAAAACTATAACAAGTGTATTGCCAAGTTTATTCACAAAGAAAAAAAGGATTTTTTTTAAAAAAATTCCTTTTTTTTTTCTAGTCCCTAGTTTTTGTCTTAATTATCATTCACATGCCTATATTTTGATGGTAGTGATGAGTTTAGTCTTAGAGGAATAATTACTTTTGACATTATTCTTCACCACCATATTTTCAAAACAAGGGGTGAATGAGTTTTTAATTTCTTATTTATGGAAATTATTTGTTATGTATTATGTTGAATAAATACTTTCCTATATATAGGCAGTGCAATTAAAGGAAAGATTTTTCTATTTCTACCCTCAGAGAATTTAACTTATATTATCAGTATAATTTAATTTGTTATAGCAATTACTTGTCTTCAAAGTGAATTAAAATGTTACTCTATTTGTATTTAAGTTATTCGATTTGATTTGATTTTTCTCTTTTTGTTAGATTACTCGATTATTCAATTGTTGATATAAGATAATGTATTATCTATCTAATGTAAATGAATACTTATTTTTGAATGAGGATTAAAGGA</gDNA_template>
            <first_frame> *  K  *  N  S  T  N  F  L  F  P  S  N  I  T  I  M  A  N  I  L  K  L  L  R  F  S  T  E  I  A  P  Q  K  F  I  S  L  P  K  P  C  P  I  S  K  K  L  D  T  I  K  E  E  E  A  Y  V  S  V  I  S  S  S  L  D  R  K  L  E  R  D  R  Y  L  G  T  E  V  S  S  I  L  A  Y  *  *  A  Y  G  L  T  K  T  A  Y  T  I  H  S  K  K  N  K  K  H  Y  Y  S  L  K  I  R  V  V  H  T  L  *  K  K  Y  C  Q  L  F  I  R  H  *  *  N  N  I  F  F  *  D  W  N  N  V  G  *  N  L  K  L  *  Q  V  Y  C  Q  V  Y  S  Q  R  K  K  G  F  F  L  K  K  F  L  F  F  F  *  S  L  V  F  V  L  I  I  I  H  M  P  I  F  *  W  *  *  *  V  *  S  *  R  N  N  Y  F  *  H  Y  S  S  P  P  Y  F  Q  N  K  G  *  M  S  F  *  F  L  I  Y  G  N  Y  L  L  C  I  M  L  N  K  Y  F  P  I  Y  R  Q  C  N  *  R  K  D  F  S  I  S  T  L  R  E  F  N  L  Y  Y  Q  Y  N  L  I  C  Y  S  N  Y  L  S  S  K  *  I  K  M  L  L  Y  L  Y  L  S  Y  S  I  *  F  D  F  S  L  F  V  R  L  L  D  Y  S  I  V  D  I  R  *  C  I  I  Y  L  M  *  M  N  T  Y  F  *  M  R  I  K  G </first_frame>
            <second_frame>  K  N  K  I  L  P  I  F  F  S  P  P  T  L  Q  *  W  P  I  F  L  N  C  *  G  F  Q  Q  K  L  L  H  K  N  L  S  L  Y  L  N  H  V  Q  F  L  K  N  W  T  P  S  K  R  K  K  L  M  Y  Q  L  F  H  L  L  S  I  E  N  S  K  E  I  D  I  S  E  P  K  L  A  P  S  *  L  I  S  K  H  M  A  L  Q  K  L  P  I  L  F  T  P  R  K  I  K  S  T  T  I  V  L  K  S  V  L  F  I  L  F  K  K  N  T  V  S  C  S  F  D  T  D  R  T  I  F  F  F  K  I  G  T  T  *  V  K  T  *  N  Y  N  K  C  I  A  K  F  I  H  K  E  K  K  D  F  F  *  K  N  S  F  F  F  S  S  P  *  F  L  S  *  L  S  F  T  C  L  Y  F  D  G  S  D  E  F  S  L  R  G  I  I  T  F  D  I  I  L  H  H  H  I  F  K  T  R  G  E  *  V  F  N  F  L  F  M  E  I  I  C  Y  V  L  C  *  I  N  T  F  L  Y  I  G  S  A  I  K  G  K  I  F  L  F  L  P  S  E  N  L  T  Y  I  I  S  I  I  *  F  V  I  A  I  T  C  L  Q  S  E  L  K  C  Y  S  I  C  I  *  V  I  R  F  D  L  I  F  L  F  L  L  D  Y  S  I  I  Q  L  L  I  *  D  N  V  L  S  I  *  C  K  *  I  L  I  F  E  *  G  L  K   </second_frame>
            <third_frame>   K  I  K  F  Y  Q  F  S  F  P  L  Q  H  Y  N  N  G  Q  Y  S  *  I  V  K  V  F  N  R  N  C  S  T  K  I  Y  L  F  T  *  T  M  S  N  F  *  K  I  G  H  H  Q  R  G  R  S  L  C  I  S  Y  F  I  F  S  R  *  K  T  R  K  R  S  I  S  R  N  R  S  *  L  H  L  S  L  L  V  S  I  W  P  Y  K  N  C  L  Y  Y  S  L  Q  E  K  *  K  A  L  L  *  S  *  N  P  C  C  S  Y  S  L  K  K  I  L  S  V  V  H  S  T  L  I  E  Q  Y  F  F  L  R  L  E  Q  R  R  L  K  L  K  T  I  T  S  V  L  P  S  L  F  T  K  K  K  R  I  F  F  K  K  I  P  F  F  F  L  V  P  S  F  C  L  N  Y  H  S  H  A  Y  I  L  M  V  V  M  S  L  V  L  E  E  *  L  L  L  T  L  F  F  T  T  I  F  S  K  Q  G  V  N  E  F  L  I  S  Y  L  W  K  L  F  V  M  Y  Y  V  E  *  I  L  S  Y  I  *  A  V  Q  L  K  E  R  F  F  Y  F  Y  P  Q  R  I  *  L  I  L  S  V  *  F  N  L  L  *  Q  L  L  V  F  K  V  N  *  N  V  T  L  F  V  F  K  L  F  D  L  I  *  F  F  S  F  C  *  I  T  R  L  F  N  C  *  Y  K  I  M  Y  Y  L  S  N  V  N  E  Y  L  F  L  N  E  D  *  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110529" stop="110266"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPCCSYSLKKILSVVHSTLIEQYFFLRLEQRRLKLKTITSVLPSLFTKKKRIFFKKIPFFFLVPSFCLNYHSHAYILMVVMSLVLEE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110852" stop="110604"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSTNFLFPSNITIMANILKLLRFSTEIAPQKFISLPKPCPISKKLDTIKEEEAYVSVISSSLDRKLERDRYLGTEVSSILAY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="134579" PGL_stop="127682"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="134579" e_stop="134445"/>
            <exon e_start="131104" e_stop="130997"/>
            <exon e_start="130926" e_stop="130892"/>
            <exon e_start="129877" e_stop="129765"/>
            <exon e_start="129535" e_stop="129274"/>
            <exon e_start="129161" e_stop="128893"/>
            <exon e_start="128325" e_stop="127682"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.990" e_score="0.993"/>
          <exon-intron don_prob="0.999" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.955" e_score="0.996"/>
          <exon-intron don_prob="0.877" acc_prob="0.847" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="134579" e_stop="134445" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.990">
            <gDNA_intron_boundary i_start="134444" i_stop="131105" i_length="3340"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="131104" e_stop="130997" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.995">
            <gDNA_intron_boundary i_start="130996" i_stop="130927" i_length="70"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="130926" e_stop="130892" e_length="35"/>
          </exon>
          <intron i_serial="3" don_prob="0.905" acc_prob="0.986">
            <gDNA_intron_boundary i_start="130891" i_stop="129878" i_length="1014"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="129877" e_stop="129765" e_length="113"/>
          </exon>
          <intron i_serial="4" don_prob="0.860" acc_prob="0.979">
            <gDNA_intron_boundary i_start="129764" i_stop="129536" i_length="229"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="129535" e_stop="129274" e_length="262"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.955">
            <gDNA_intron_boundary i_start="129273" i_stop="129162" i_length="112"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="129161" e_stop="128893" e_length="269"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.847">
            <gDNA_intron_boundary i_start="128892" i_stop="128326" i_length="567"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="128325" e_stop="127682" e_length="644"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134579" stop="134445"/>
              <exon start="131104" stop="130997"/>
              <exon start="130926" stop="130892"/>
              <exon start="129877" stop="129765"/>
              <exon start="129535" stop="129274"/>
              <exon start="129161" stop="128893"/>
              <exon start="128325" stop="127682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745425" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGCGCGTGTTGACTGAACTCTTTAGGTATCAATGGCGGATCGAGAGAGAAAATTGATGAGCGAAGGTGTTTTAACTTATGCATACATACTTCTCTATATTTCCTTATCGAGTGGTCAGATCTTCTTCAACAAG : TGGGTTTTATCATCAAAAGAAATAAACTTCCCGTATCCTCTTGCGCTGACGCTACTTCACATGGTCTTCTCCTCAGTACTGTGTTTTGTGCTTACCAAAGTTCTCAAG : ATAATGAAGGTTGAAGAAGGAATGACTCTAGACAT : ATACATTAGCTCAGTCATCCCAATTGGTGCTATGTTTGCTATGACGCTTTGGCTTGGGAACACAGCTTACCTTTATATTTCTGTTTCATTTGCTCAGATGTTGAAAGCAATCA : TGCCCGTAGCTGTCTTCATCCTTGGAGTTGCAGCTGGACTCGAAATGATGAGCTGCAGAATGCTTCTCATAATGTCTGTAATCAGTTTTGGTGTACTAGTAGCTTCTTATGGAGAAATAAACATCAACTGGGTTGGTGTCATCTACCAAATGGGAGGTGTTGTTGGAGAAGCTTTAAGGCTTATATTTATGGAGATTCTGGTAAAACGGAAGGGCCTCAAGCTAAACCCCATTTCTGTCATGTACTATGTTAGCCCATGCAG : CGCTCTTTGCCTTTTAGTTCCATGGATCTTTTTGGAGAAACCAAAGATGGACGAACAACTAACATGGAGCTTTCACCCTCTTGTTCTAACTCTAAATTGTATATGTACTTTTGCCTTGAATCTCTCTGTTTTCTTGGTGATCTCACATACAAGTGCCCTAACAATTCGTGTTGCTGGAGTTGTCAAAGACTGGGTGGTTGTACTGCTGTCTGCACTACTTTTTGCTGATACGAAGCTGACACTTATCAATCTTTGTGGTTATGCTATTG : CTATTGCTGGTGTAGCTGCATATAACAGCCACAAGCTAAAGAAGGAAGCTACCCGAGTAAGCTCAGACGAGTCTCAAGCCACTTCGTCTATACCTTTAGTATCATCTTCAACGTCAAATGCGTAGATCTATCTGAAGAGTAGTCTTGCAGTCTATTCTGAGGTCTTGCAAGTAACGGAGCAGAAAATTCTGCAAATTCCAGTATGTCTTTTTTTTTCGGGGCAAGTAGGGGTTGGCTCACTCTTAAAATTGATGCATTATTGAAAACTACAACACATTTGCTGGTTTAGTAGAAGATAAAGTTGAACATGGTGATATTCAAGTCATGAACTTGTCTATGCGACATTCTCTGGTTATTACTGCTGCTTTTGAATTCGAGACATCGGAGCACAAGAAAAAGAAACAGCTATAATGATGTATAATATAGAGGATCCCATATATTTTTGATCGCGTAAAGGTTGGGAAACTGACATTCTTTTTGTTCGATATAGACATCGATGAATGCTGACTGTTGATATGTTGAAACAGATTCCAGATTTATTAGAGTGTATAGCTGTTGGTGGAATTGAGTTCTTCTTGAGACAATTTTCTGTTGTAAGGTTGATCATTTTTTTTTGCTTGAAATACAATATTTGAACAGATTTA</gDNA_template>
            <first_frame> R  A  R  V  D  *  T  L  *  V  S  M  A  D  R  E  R  K  L  M  S  E  G  V  L  T  Y  A  Y  I  L  L  Y  I  S  L  S  S  G  Q  I  F  F  N  K  :  W  V  L  S  S  K  E  I  N  F  P  Y  P  L  A  L  T  L  L  H  M  V  F  S  S  V  L  C  F  V  L  T  K  V  L  K  :  I  M  K  V  E  E  G  M  T  L  D  I :   Y  I  S  S  V  I  P  I  G  A  M  F  A  M  T  L  W  L  G  N  T  A  Y  L  Y  I  S  V  S  F  A  Q  M  L  K  A  I   : M  P  V  A  V  F  I  L  G  V  A  A  G  L  E  M  M  S  C  R  M  L  L  I  M  S  V  I  S  F  G  V  L  V  A  S  Y  G  E  I  N  I  N  W  V  G  V  I  Y  Q  M  G  G  V  V  G  E  A  L  R  L  I  F  M  E  I  L  V  K  R  K  G  L  K  L  N  P  I  S  V  M  Y  Y  V  S  P  C  S :   A  L  C  L  L  V  P  W  I  F  L  E  K  P  K  M  D  E  Q  L  T  W  S  F  H  P  L  V  L  T  L  N  C  I  C  T  F  A  L  N  L  S  V  F  L  V  I  S  H  T  S  A  L  T  I  R  V  A  G  V  V  K  D  W  V  V  V  L  L  S  A  L  L  F  A  D  T  K  L  T  L  I  N  L  C  G  Y  A  I   : A  I  A  G  V  A  A  Y  N  S  H  K  L  K  K  E  A  T  R  V  S  S  D  E  S  Q  A  T  S  S  I  P  L  V  S  S  S  T  S  N  A  *  I  Y  L  K  S  S  L  A  V  Y  S  E  V  L  Q  V  T  E  Q  K  I  L  Q  I  P  V  C  L  F  F  S  G  Q  V  G  V  G  S  L  L  K  L  M  H  Y  *  K  L  Q  H  I  C  W  F  S  R  R  *  S  *  T  W  *  Y  S  S  H  E  L  V  Y  A  T  F  S  G  Y  Y  C  C  F  *  I  R  D  I  G  A  Q  E  K  E  T  A  I  M  M  Y  N  I  E  D  P  I  Y  F  *  S  R  K  G  W  E  T  D  I  L  F  V  R  Y  R  H  R  *  M  L  T  V  D  M  L  K  Q  I  P  D  L  L  E  C  I  A  V  G  G  I  E  F  F  L  R  Q  F  S  V  V  R  L  I  I  F  F  C  L  K  Y  N  I  *  T  D  L </first_frame>
            <second_frame>  E  R  V  L  T  E  L  F  R  Y  Q  W  R  I  E  R  E  N  *  *  A  K  V  F  *  L  M  H  T  Y  F  S  I  F  P  Y  R  V  V  R  S  S  S  T  S :   G  F  Y  H  Q  K  K  *  T  S  R  I  L  L  R  *  R  Y  F  T  W  S  S  P  Q  Y  C  V  L  C  L  P  K  F  S  R :   *  *  R  L  K  K  E  *  L  *  T   : Y  T  L  A  Q  S  S  Q  L  V  L  C  L  L  *  R  F  G  L  G  T  Q  L  T  F  I  F  L  F  H  L  L  R  C  *  K  Q  S  :  C  P  *  L  S  S  S  L  E  L  Q  L  D  S  K  *  *  A  A  E  C  F  S  *  C  L  *  S  V  L  V  Y  *  *  L  L  M  E  K  *  T  S  T  G  L  V  S  S  T  K  W  E  V  L  L  E  K  L  *  G  L  Y  L  W  R  F  W  *  N  G  R  A  S  S  *  T  P  F  L  S  C  T  M  L  A  H  A   : A  L  F  A  F  *  F  H  G  S  F  W  R  N  Q  R  W  T  N  N  *  H  G  A  F  T  L  L  F  *  L  *  I  V  Y  V  L  L  P  *  I  S  L  F  S  W  *  S  H  I  Q  V  P  *  Q  F  V  L  L  E  L  S  K  T  G  W  L  Y  C  C  L  H  Y  F  L  L  I  R  S  *  H  L  S  I  F  V  V  M  L  L  :  L  L  L  V  *  L  H  I  T  A  T  S  *  R  R  K  L  P  E  *  A  Q  T  S  L  K  P  L  R  L  Y  L  *  Y  H  L  Q  R  Q  M  R  R  S  I  *  R  V  V  L  Q  S  I  L  R  S  C  K  *  R  S  R  K  F  C  K  F  Q  Y  V  F  F  F  R  G  K  *  G  L  A  H  S  *  N  *  C  I  I  E  N  Y  N  T  F  A  G  L  V  E  D  K  V  E  H  G  D  I  Q  V  M  N  L  S  M  R  H  S  L  V  I  T  A  A  F  E  F  E  T  S  E  H  K  K  K  K  Q  L  *  *  C  I  I  *  R  I  P  Y  I  F  D  R  V  K  V  G  K  L  T  F  F  L  F  D  I  D  I  D  E  C  *  L  L  I  C  *  N  R  F  Q  I  Y  *  S  V  *  L  L  V  E  L  S  S  S  *  D  N  F  L  L  *  G  *  S  F  F  F  A  *  N  T  I  F  E  Q  I   </second_frame>
            <third_frame>   S  A  C  *  L  N  S  L  G  I  N  G  G  S  R  E  K  I  D  E  R  R  C  F  N  L  C  I  H  T  S  L  Y  F  L  I  E  W  S  D  L  L  Q  Q   : V  G  F  I  I  K  R  N  K  L  P  V  S  S  C  A  D  A  T  S  H  G  L  L  L  S  T  V  F  C  A  Y  Q  S  S  Q   : D  N  E  G  *  R  R  N  D  S  R  H  :  I  H  *  L  S  H  P  N  W  C  Y  V  C  Y  D  A  L  A  W  E  H  S  L  P  L  Y  F  C  F  I  C  S  D  V  E  S  N  H :   A  R  S  C  L  H  P  W  S  C  S  W  T  R  N  D  E  L  Q  N  A  S  H  N  V  C  N  Q  F  W  C  T  S  S  F  L  W  R  N  K  H  Q  L  G  W  C  H  L  P  N  G  R  C  C  W  R  S  F  K  A  Y  I  Y  G  D  S  G  K  T  E  G  P  Q  A  K  P  H  F  C  H  V  L  C  *  P  M  Q  :  R  S  L  P  F  S  S  M  D  L  F  G  E  T  K  D  G  R  T  T  N  M  E  L  S  P  S  C  S  N  S  K  L  Y  M  Y  F  C  L  E  S  L  C  F  L  G  D  L  T  Y  K  C  P  N  N  S  C  C  W  S  C  Q  R  L  G  G  C  T  A  V  C  T  T  F  C  *  Y  E  A  D  T  Y  Q  S  L  W  L  C  Y  C :   Y  C  W  C  S  C  I  *  Q  P  Q  A  K  E  G  S  Y  P  S  K  L  R  R  V  S  S  H  F  V  Y  T  F  S  I  I  F  N  V  K  C  V  D  L  S  E  E  *  S  C  S  L  F  *  G  L  A  S  N  G  A  E  N  S  A  N  S  S  M  S  F  F  F  G  A  S  R  G  W  L  T  L  K  I  D  A  L  L  K  T  T  T  H  L  L  V  *  *  K  I  K  L  N  M  V  I  F  K  S  *  T  C  L  C  D  I  L  W  L  L  L  L  L  L  N  S  R  H  R  S  T  R  K  R  N  S  Y  N  D  V  *  Y  R  G  S  H  I  F  L  I  A  *  R  L  G  N  *  H  S  F  C  S  I  *  T  S  M  N  A  D  C  *  Y  V  E  T  D  S  R  F  I  R  V  Y  S  C  W  W  N  *  V  L  L  E  T  I  F  C  C  K  V  D  H  F  F  L  L  E  I  Q  Y  L  N  R  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C10HBa0155I21.2" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134552" stop="134445"/>
                    <exon start="131104" stop="130997"/>
                    <exon start="130926" stop="130892"/>
                    <exon start="129877" stop="129765"/>
                    <exon start="129535" stop="129274"/>
                    <exon start="129161" stop="128893"/>
                    <exon start="128325" stop="128201"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1017</number_coding_nucleotides>
                  <number_encoded_amino_acids>339</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSMADRERKLMSEGVLTYAYILLYISLSSGQIFFNKWVLSSKEINFPYPLALTLLHMVFSSVLCFVLTKVLKIMKVEEGMTLDIYISSVIPIGAMFAMTLWLGNTAYLYISVSFAQMLKAIMPVAVFILGVAAGLEMMSCRMLLIMSVISFGVLVASYGEININWVGVIYQMGGVVGEALRLIFMEILVKRKGLKLNPISVMYYVSPCSALCLLVPWIFLEKPKMDEQLTWSFHPLVLTLNCICTFALNLSVFLVISHTSALTIRVAGVVKDWVVVLLSALLFADTKLTLINLCGYAIAIAGVAAYNSHKLKKEATRVSSDESQATSSIPLVSSSTSNA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 379 chains have been computed
$ 
$ memory statistics:
$ 2043264 bytes spliced alignments in total
$ 288 spliced alignments have been stored
$ 7094 bytes was the average size of a spliced alignment
$ 40264 bytes predicted gene locations in total
$ 24 predicted gene locations have been stored
$ 1677 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 398 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-03 21:09:25
-->
